RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '630988-1595444', '/home/buildd/filecache-default/da7fe6111206b417de2251578e6f7503190ddace'] Synching the system clock with the buildd NTP service... 7 Jun 19:59:29 ntpdate[26875]: adjust time server 10.122.37.1 offset -0.000135 sec Unpacking chroot for build 630988-1595444 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '630988-1595444'] Mounting chroot for build 630988-1595444 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '630988-1595444', 'universe'] Attempting OGRE for universe in build-630988-1595444 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '630988-1595444', 'deb http://ftpmaster.internal/ubuntu intrepid main restricted universe'] Overriding sources.list in build-630988-1595444 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '630988-1595444'] Updating debian chroot for build 630988-1595444 Get:1 http://ftpmaster.internal intrepid Release.gpg [191B] Get:2 http://ftpmaster.internal intrepid Release [65.9kB] Get:3 http://ftpmaster.internal intrepid/main Packages [1164kB] Get:4 http://ftpmaster.internal intrepid/restricted Packages [1732B] Get:5 http://ftpmaster.internal intrepid/universe Packages [4324kB] Fetched 5556kB in 10s (527kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages have been kept back: perl perl-base perl-modules The following packages will be upgraded: initscripts libpam-foreground lsb-base make startup-tasks system-services sysv-rc sysvinit-utils sysvutils upstart upstart-compat-sysv upstart-logd 12 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. Need to get 0B/773kB of archives. After this operation, 213kB of additional disk space will be used. (Reading database ... 9517 files and directories currently installed.) Preparing to replace sysvinit-utils 2.86.ds1-56ubuntu2 (using .../sysvinit-utils_2.86.ds1-56ubuntu3_hppa.deb) ... Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.86.ds1-56ubuntu3) ... (Reading database ... 9517 files and directories currently installed.) Preparing to replace sysv-rc 2.86.ds1-56ubuntu2 (using .../sysv-rc_2.86.ds1-56ubuntu3_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace lsb-base 3.2-4ubuntu1 (using .../lsb-base_3.2-12ubuntu1_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (3.2-12ubuntu1) ... (Reading database ... 9517 files and directories currently installed.) Preparing to replace initscripts 2.86.ds1-56ubuntu2 (using .../initscripts_2.86.ds1-56ubuntu3_hppa.deb) ... Unpacking replacement initscripts ... Preparing to replace upstart-compat-sysv 0.3.9-2 (using .../upstart-compat-sysv_0.3.9-6_hppa.deb) ... Unpacking replacement upstart-compat-sysv ... Preparing to replace upstart-logd 0.3.9-2 (using .../upstart-logd_0.3.9-6_hppa.deb) ... Unpacking replacement upstart-logd ... Preparing to replace upstart 0.3.9-2 (using .../upstart_0.3.9-6_hppa.deb) ... Unpacking replacement upstart ... Preparing to replace startup-tasks 0.3.9-2 (using .../startup-tasks_0.3.9-6_hppa.deb) ... Unpacking replacement startup-tasks ... Preparing to replace system-services 0.3.9-2 (using .../system-services_0.3.9-6_hppa.deb) ... Unpacking replacement system-services ... Preparing to replace sysvutils 2.86.ds1-56ubuntu2 (using .../sysvutils_2.86.ds1-56ubuntu3_all.deb) ... Unpacking replacement sysvutils ... Preparing to replace libpam-foreground 0.4-1 (using .../libpam-foreground_0.5_hppa.deb) ... Unpacking replacement libpam-foreground ... Preparing to replace make 3.81-4 (using .../archives/make_3.81-5_hppa.deb) ... Unpacking replacement make ... Setting up sysv-rc (2.86.ds1-56ubuntu3) ... Setting up initscripts (2.86.ds1-56ubuntu3) ... Setting up upstart (0.3.9-6) ... Setting up upstart-compat-sysv (0.3.9-6) ... Setting up upstart-logd (0.3.9-6) ... Setting up startup-tasks (0.3.9-6) ... Setting up system-services (0.3.9-6) ... Setting up sysvutils (2.86.ds1-56ubuntu3) ... Setting up libpam-foreground (0.5) ... Setting up make (3.81-5) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '630988-1595444', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=intrepid', '--comp=universe', 'epcr_2.3.10-1.dsc'] Initiating build Automatic build of epcr_2.3.10-1 on primero by sbuild/hppa 1.170.5 Build started at 20080607-2000 ****************************************************************************** epcr_2.3.10-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5.0), quilt, cdbs Checking for already installed source dependencies... debhelper: missing quilt: missing cdbs: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper quilt cdbs Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake1.7 autotools-dev bsdmainutils diffstat fdupes file gettext gettext-base groff-base html2text ifupdown intltool intltool-debian libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 liburi-perl libwww-perl libxml-parser-perl m4 man-db net-tools netbase po-debconf update-inetd Suggested packages: autobook autoconf-archive autoconf-doc autoconf2.13 gnu-standards libtool vacation wamerican wordlist whois devscripts doc-base dh-make cvs gettext-doc groff iproute dhcp3-client dhcp-client ppp libio-socket-ssl-perl less www-browser procmail graphviz Recommended packages: automake automaken curl wget lynx libcompress-zlib-perl libhtml-format-perl libmailtools-perl libmail-sendmail-perl libmail-box-perl The following NEW packages will be installed: autoconf automake1.7 autotools-dev bsdmainutils cdbs debhelper diffstat fdupes file gettext gettext-base groff-base html2text ifupdown intltool intltool-debian libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 liburi-perl libwww-perl libxml-parser-perl m4 man-db net-tools netbase po-debconf quilt update-inetd dpkg-preconfigure: unable to re-open stdin: 0 upgraded, 31 newly installed, 0 to remove and 3 not upgraded. Need to get 0B/10.4MB of archives. After this operation, 31.2MB of additional disk space will be used. Selecting previously deselected package gettext-base. (Reading database ... 9519 files and directories currently installed.) Unpacking gettext-base (from .../gettext-base_0.17-2ubuntu1_hppa.deb) ... Selecting previously deselected package net-tools. Unpacking net-tools (from .../net-tools_1.60-19ubuntu1_hppa.deb) ... Selecting previously deselected package ifupdown. Unpacking ifupdown (from .../ifupdown_0.6.8ubuntu8_hppa.deb) ... Selecting previously deselected package update-inetd. Unpacking update-inetd (from .../update-inetd_4.30_all.deb) ... Selecting previously deselected package netbase. Unpacking netbase (from .../netbase_4.30ubuntu1_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu2_hppa.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_4.24-2_hppa.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_4.24-2_hppa.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-20_hppa.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-0ubuntu1_hppa.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.35.dfsg.1-1_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.56-1_hppa.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.812-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build1_hppa.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.2-1_hppa.deb) ... Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.11-1_hppa.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.61-7_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20080123.1_all.deb) ... Selecting previously deselected package automake1.7. Unpacking automake1.7 (from .../automake1.7_1.7.9-9_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-3build2_hppa.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-2ubuntu1_hppa.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.14_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.0.8ubuntu1_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-1_hppa.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.40.0-1_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.52ubuntu1_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.45-2_hppa.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../quilt_0.46-4.1_all.deb) ... Setting up gettext-base (0.17-2ubuntu1) ... Setting up net-tools (1.60-19ubuntu1) ... Setting up ifupdown (0.6.8ubuntu8) ... ifupdown.postinst: Warning: No 'iface lo' definition found in /etc/network/interfaces ifupdown.postinst: Warning: No 'auto lo' statement found in /etc/network/interfaces Setting up update-inetd (4.30) ... Setting up netbase (4.30ubuntu1) ... Setting up bsdmainutils (6.1.10ubuntu2) ... Setting up libmagic1 (4.24-2) ... Setting up file (4.24-2) ... Setting up groff-base (1.18.1.1-20) ... Setting up libexpat1 (2.0.1-0ubuntu1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up liburi-perl (1.35.dfsg.1-1) ... Setting up libhtml-parser-perl (3.56-1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up libwww-perl (5.812-1) ... Setting up libxml-parser-perl (2.36-1.1build1) ... Setting up man-db (2.5.2-1) ... Building database of manual pages ... Setting up m4 (1.4.11-1) ... Setting up autoconf (2.61-7) ... Setting up autotools-dev (20080123.1) ... Setting up automake1.7 (1.7.9-9) ... Setting up html2text (1.3.2a-3build2) ... Setting up gettext (0.17-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.14) ... Setting up debhelper (7.0.8ubuntu1) ... Setting up fdupes (1.50-PR2-1) ... Setting up intltool (0.40.0-1) ... Setting up cdbs (0.4.52ubuntu1) ... Setting up diffstat (1.45-2) ... Setting up quilt (0.46-4.1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.6.1-6ubuntu2 make_3.81-5 dpkg-dev_1.14.19ubuntu1 gcc-4.3_4.3.0-5ubuntu1 g++-4.3_4.3.0-5ubuntu1 binutils_2.18.50.20080530-0ubuntu1 libstdc++6_4.3.0-5ubuntu1 libstdc++6-4.3-dev_4.3.0-5ubuntu1 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Fri Jun 6 10:55:01 2008 BST using DSA key ID C09FD35A gpg: Can't check signature: public key not found dpkg-source: extracting epcr in epcr-2.3.10 dpkg-source: unpacking epcr_2.3.10.orig.tar.gz dpkg-source: applying /home/buildd/build-630988-1595444/epcr_2.3.10-1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package epcr dpkg-buildpackage: source version 2.3.10-1 dpkg-buildpackage: host architecture hppa /usr/bin/fakeroot debian/rules clean test -x debian/rules test "`id -u`" = 0 /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/epcr-2.3.10' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/epcr-2.3.10' if [ -d "." ] ; then \ cd . && QUILT_PATCHES=/build/buildd/epcr-2.3.10/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi No patch removed rm -rf ./.pc rm -f debian/stamp-patch* dh_clean /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.10\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1" CXXFLAGS="-g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.10\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions `getconf LFS_LDFLAGS` `getconf LFS_LIBS` -L." -k clean make[1]: Entering directory `/build/buildd/epcr-2.3.10' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ /usr/bin/make -ef ./stand/Makefile.$i clean ; \ done make[2]: Entering directory `/build/buildd/epcr-2.3.10' rm ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o defaults.h~ build_cfg.h~ bin-io.hpp~ strref.hpp~ faread.hpp~ fast_seqio.hpp~ hashset.hpp~ minilcs.hpp~ align.hpp~ sts_i.hpp~ stsmatch_i.hpp~ stsmatch_m.hpp~ stsmatch.hpp~ fahash.hpp~ sts.hpp~ ./faread.cpp~ ./fast_seqio_read.cpp~ ./fast_seqio_write.cpp~ ./hashset.cpp~ ./mmap.cpp~ ./align.cpp~ ./stsmatch_i.cpp~ ./stsmatch_m.cpp~ ./stsfilter.cpp~ ./stsmatch.cpp~ ./fahash_create.cpp~ ./fahash_create1.cpp~ ./fahash_create2.cpp~ ./fahash_lookup.cpp~ rm: cannot remove `./faread.o': No such file or directory rm: cannot remove `./fast_seqio_read.o': No such file or directory rm: cannot remove `./fast_seqio_write.o': No such file or directory rm: cannot remove `./hashset.o': No such file or directory rm: cannot remove `./mmap.o': No such file or directory rm: cannot remove `./align.o': No such file or directory rm: cannot remove `./stsmatch_i.o': No such file or directory rm: cannot remove `./stsmatch_m.o': No such file or directory rm: cannot remove `./stsfilter.o': No such file or directory rm: cannot remove `./stsmatch.o': No such file or directory rm: cannot remove `./fahash_create.o': No such file or directory rm: cannot remove `./fahash_create1.o': No such file or directory rm: cannot remove `./fahash_create2.o': No such file or directory rm: cannot remove `./fahash_lookup.o': No such file or directory rm: cannot remove `defaults.h~': No such file or directory rm: cannot remove `build_cfg.h~': No such file or directory rm: cannot remove `bin-io.hpp~': No such file or directory rm: cannot remove `strref.hpp~': No such file or directory rm: cannot remove `faread.hpp~': No such file or directory rm: cannot remove `fast_seqio.hpp~': No such file or directory rm: cannot remove `hashset.hpp~': No such file or directory rm: cannot remove `minilcs.hpp~': No such file or directory rm: cannot remove `align.hpp~': No such file or directory rm: cannot remove `sts_i.hpp~': No such file or directory rm: cannot remove `stsmatch_i.hpp~': No such file or directory rm: cannot remove `stsmatch_m.hpp~': No such file or directory rm: cannot remove `stsmatch.hpp~': No such file or directory rm: cannot remove `fahash.hpp~': No such file or directory rm: cannot remove `sts.hpp~': No such file or directory rm: cannot remove `./faread.cpp~': No such file or directory rm: cannot remove `./fast_seqio_read.cpp~': No such file or directory rm: cannot remove `./fast_seqio_write.cpp~': No such file or directory rm: cannot remove `./hashset.cpp~': No such file or directory rm: cannot remove `./mmap.cpp~': No such file or directory rm: cannot remove `./align.cpp~': No such file or directory rm: cannot remove `./stsmatch_i.cpp~': No such file or directory rm: cannot remove `./stsmatch_m.cpp~': No such file or directory rm: cannot remove `./stsfilter.cpp~': No such file or directory rm: cannot remove `./stsmatch.cpp~': No such file or directory rm: cannot remove `./fahash_create.cpp~': No such file or directory rm: cannot remove `./fahash_create1.cpp~': No such file or directory rm: cannot remove `./fahash_create2.cpp~': No such file or directory rm: cannot remove `./fahash_lookup.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[2]: Entering directory `/build/buildd/epcr-2.3.10' rm ./e-PCR_main.o ./e-PCR_main.cpp~ rm: cannot remove `./e-PCR_main.o': No such file or directory rm: cannot remove `./e-PCR_main.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[2]: Entering directory `/build/buildd/epcr-2.3.10' rm ./famap_main.o ./famap_main.cpp~ rm: cannot remove `./famap_main.o': No such file or directory rm: cannot remove `./famap_main.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[2]: Entering directory `/build/buildd/epcr-2.3.10' rm ./fahash_main.o ./fahash_main.cpp~ rm: cannot remove `./fahash_main.o': No such file or directory rm: cannot remove `./fahash_main.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[2]: Entering directory `/build/buildd/epcr-2.3.10' rm ./re-PCR_main.o ./re-PCR_main.cpp~ rm: cannot remove `./re-PCR_main.o': No such file or directory rm: cannot remove `./re-PCR_main.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[1]: Leaving directory `/build/buildd/epcr-2.3.10' rm -f debian/stamp-makefile-build rm -f epcr rm -f libepcr.a rm -f e-PCR famap fahash re-PCR debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/epcr-2.3.10' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/epcr-2.3.10' cd . && QUILT_PATCHES=/build/buildd/epcr-2.3.10/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 No patches in series touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/buildd/epcr-2.3.10' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/buildd/epcr-2.3.10' /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.10\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1" CXXFLAGS="-g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.10\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions `getconf LFS_LDFLAGS` `getconf LFS_LIBS` -L." make[1]: Entering directory `/build/buildd/epcr-2.3.10' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ /usr/bin/make -ef ./stand/Makefile.$i all ; \ done make[2]: Entering directory `/build/buildd/epcr-2.3.10' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c faread.cpp -o faread.o faread.cpp: In member function 'void ncbi::pcr_tools::CFastaReader::SeqlineCbk(ncbi::pcr_tools::IFastaReaderCallback*, char*, unsigned int)': faread.cpp:160: warning: array subscript has type 'char' faread.cpp:163: warning: array subscript has type 'char' faread.cpp:167: warning: array subscript has type 'char' g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c fast_seqio_read.cpp -o fast_seqio_read.o fast_seqio_read.cpp: In member function 'void ncbi::pcr_tools::CFastaMap::ReadEpilogue()': fast_seqio_read.cpp:107: warning: unused variable 'filesize' g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c fast_seqio_write.cpp -o fast_seqio_write.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c hashset.cpp -o hashset.o hashset.cpp: In member function 'bool ncbi::pcr_tools::CHashSet::Begin(const char*)': hashset.cpp:92: warning: array subscript has type 'char' hashset.cpp:103: warning: array subscript has type 'char' hashset.cpp: At global scope: hashset.cpp:52: warning: 'char* s_BitsRepr(unsigned int, int)' defined but not used g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c mmap.cpp -o mmap.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c align.cpp -o align.o align.cpp: In function 'char ncbi::pcr_tools::UCase(char)': align.cpp:66: warning: array subscript has type 'char' g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c stsmatch_i.cpp -o stsmatch_i.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c stsmatch_m.cpp -o stsmatch_m.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c stsfilter.cpp -o stsfilter.o stsfilter.cpp: In static member function 'static bool ncbi::pcr_tools::CPcrMachinePostprocess::OrderByPos2Pos1(const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&, const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&)': stsfilter.cpp:47: warning: suggest parentheses around && within || stsfilter.cpp: In static member function 'static int ncbi::pcr_tools::CPcrMachinePostprocess::Compare(const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&, const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&, unsigned int, unsigned int)': stsfilter.cpp:59: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:59: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:60: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:60: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:64: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:64: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:67: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:68: warning: comparison between signed and unsigned integer expressions stsfilter.cpp: In static member function 'static bool ncbi::pcr_tools::CPcrMachinePostprocess::Overlap(unsigned int, unsigned int, const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&, const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&)': stsfilter.cpp:77: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:77: warning: comparison between signed and unsigned integer expressions g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c stsmatch.cpp -o stsmatch.o stsmatch.cpp: In member function 'virtual bool ncbi::pcr_tools::CStsFileCallbackDefault::Error(ncbi::pcr_tools::IStsFileCallback::EError)': stsmatch.cpp:80: warning: enumeration value 'eErrTOTAL' not handled in switch g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c fahash_create.cpp -o fahash_create.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c fahash_create1.cpp -o fahash_create1.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c fahash_create2.cpp -o fahash_create2.o fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::AddSequence(const char*, unsigned int, off64_t)': fahash_create2.cpp:65: warning: comparison between signed and unsigned integer expressions fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::DumpTables()': fahash_create2.cpp:117: warning: comparison between signed and unsigned integer expressions fahash_create2.cpp:120: warning: comparison between signed and unsigned integer expressions fahash_create2.cpp:149: warning: comparison between signed and unsigned integer expressions g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c fahash_lookup.cpp -o fahash_lookup.o fahash_lookup.cpp: In member function 'bool SMatchPos::operator<(const SMatchPos&) const': fahash_lookup.cpp:343: warning: suggest parentheses around && within || fahash_lookup.cpp: In member function 'bool CMatchSts::SHit::operator<(const CMatchSts::SHit&) const': fahash_lookup.cpp:386: warning: suggest parentheses around && within || fahash_lookup.cpp:386: warning: suggest parentheses around && within || fahash_lookup.cpp:386: warning: suggest parentheses around && within || fahash_lookup.cpp: In static member function 'static bool CMatchSts::SHit::OrderByPos2Pos1(const CMatchSts::SHit&, const CMatchSts::SHit&)': fahash_lookup.cpp:435: warning: suggest parentheses around && within || rm -f libepcr.a ar cru libepcr.a ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o ranlib libepcr.a make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[2]: Entering directory `/build/buildd/epcr-2.3.10' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c e-PCR_main.cpp -o e-PCR_main.o e-PCR_main.cpp: In member function 'void CPcrProgressCallback::Report(unsigned int, bool)': e-PCR_main.cpp:373: warning: conversion lacks type at end of format rm -f e-PCR g++ -Wl,-Bsymbolic-functions -L. -o e-PCR ./e-PCR_main.o -lepcr make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[2]: Entering directory `/build/buildd/epcr-2.3.10' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c famap_main.cpp -o famap_main.o famap_main.cpp: In member function 'int CMain::Dump()': famap_main.cpp:170: warning: comparison between signed and unsigned integer expressions famap_main.cpp:172: warning: comparison between signed and unsigned integer expressions famap_main.cpp: In member function 'int CMain::List()': famap_main.cpp:205: warning: comparison between signed and unsigned integer expressions famap_main.cpp:207: warning: comparison between signed and unsigned integer expressions famap_main.cpp: In member function 'int CMain::Execute()': famap_main.cpp:144: warning: control reaches end of non-void function rm -f famap g++ -Wl,-Bsymbolic-functions -L. -o famap ./famap_main.o -lepcr make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[2]: Entering directory `/build/buildd/epcr-2.3.10' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c fahash_main.cpp -o fahash_main.o fahash_main.cpp: In member function 'int CMain::Execute()': fahash_main.cpp:256: warning: enumeration value 'eNone' not handled in switch fahash_main.cpp: In member function 'int CMain::Stat()': fahash_main.cpp:292: warning: comparison between signed and unsigned integer expressions fahash_main.cpp: In member function 'int CMain::Execute()': fahash_main.cpp:260: warning: control reaches end of non-void function rm -f fahash g++ -Wl,-Bsymbolic-functions -L. -o fahash ./fahash_main.o -lepcr make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[2]: Entering directory `/build/buildd/epcr-2.3.10' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.10\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=10 -DSTANDALONE=1 -c re-PCR_main.cpp -o re-PCR_main.o re-PCR_main.cpp: In member function 'int CMain::Execute()': re-PCR_main.cpp:344: warning: enumeration value 'eNone' not handled in switch re-PCR_main.cpp: In member function 'int CMain::STSLookup()': re-PCR_main.cpp:485: warning: comparison between signed and unsigned integer expressions re-PCR_main.cpp:442: warning: unused variable 'tcount' re-PCR_main.cpp: In member function 'int CMain::Execute()': re-PCR_main.cpp:348: warning: control reaches end of non-void function rm -f re-PCR g++ -Wl,-Bsymbolic-functions -L. -o re-PCR ./re-PCR_main.o -lepcr make[2]: Leaving directory `/build/buildd/epcr-2.3.10' make[1]: Leaving directory `/build/buildd/epcr-2.3.10' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules test "`id -u`" = 0 dh_clean -k dh_installdirs -A mkdir -p "." DEB_MAKE_CHECK_TARGET unset, not running checks DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target dh_installdirs -pncbi-epcr dh_installdocs -pncbi-epcr dh_installexamples -pncbi-epcr dh_installman -pncbi-epcr dh_installinfo -pncbi-epcr dh_installmenu -pncbi-epcr dh_installcron -pncbi-epcr dh_installinit -pncbi-epcr dh_installdebconf -pncbi-epcr dh_installemacsen -pncbi-epcr dh_installcatalogs -pncbi-epcr dh_installpam -pncbi-epcr dh_installlogrotate -pncbi-epcr dh_installlogcheck -pncbi-epcr dh_installchangelogs -pncbi-epcr dh_installudev -pncbi-epcr dh_lintian -pncbi-epcr dh_install -pncbi-epcr dh_link -pncbi-epcr dh_installmime -pncbi-epcr dh_strip -pncbi-epcr dh_strip debug symbol extraction: all non-arch-all packages for this build platform hppa: ncbi-epcr dh_strip debug symbol extraction: packages to act on: ncbi-epcr dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/ncbi-epcr-dbgsym/DEBIAN/control, package ncbi-epcr-dbgsym, directory ./debian/ncbi-epcr-dbgsym pkgstriptranslations: ncbi-epcr-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball dpkg-deb: building package `ncbi-epcr-dbgsym' in `../ncbi-epcr-dbgsym_2.3.10-1_hppa.ddeb'. dh_compress -pncbi-epcr dh_fixperms -pncbi-epcr dh_makeshlibs -pncbi-epcr dh_installdeb -pncbi-epcr dh_perl -pncbi-epcr dh_shlibdeps -pncbi-epcr dh_gencontrol -pncbi-epcr dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends} # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/ncbi-epcr/usr/share/doc ] || \ [ ! -d debian/ncbi-epcr/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/ncbi-epcr/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/ncbi-epcr/usr/share/doc/ncbi-epcr; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/ncbi-epcr/usr/share/doc/ncbi-epcr/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in ncbi-epcr to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/ncbi-epcr/usr/share/gnome/help ]; then \ cd debian/ncbi-epcr && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p ncbi-epcr dh_md5sums -pncbi-epcr dh_builddeb -pncbi-epcr pkgstriptranslations: processing control file: ./debian/ncbi-epcr/DEBIAN/control, package ncbi-epcr, directory ./debian/ncbi-epcr pkgstriptranslations: ncbi-epcr does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball dpkg-deb: building package `ncbi-epcr' in `../ncbi-epcr_2.3.10-1_hppa.deb'. dpkg-genchanges -B -mUbuntu/hppa Build Daemon >../epcr_2.3.10-1_hppa.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20080607-2003 Publishing debug debs. chroot-autobuild/build/buildd/ncbi-epcr_2.3.10-1_hppa.deb: new debian package, version 2.0. size 237032 bytes: control archive= 1400 bytes. 1480 bytes, 29 lines control 812 bytes, 13 lines md5sums Package: ncbi-epcr Source: epcr Version: 2.3.10-1 Architecture: hppa Maintainer: Debian-Med Packaging Team Installed-Size: 580 Depends: libc6 (>= 2.6.1-1), libgcc4 (>= 4.1.1-21), libstdc++6 (>= 4.2.1-4) Suggests: bioperl Section: science Priority: optional Homepage: http://www.ncbi.nlm.nih.gov/sutils/e-pcr/ Description: Tool to test a DNA sequence for the presence of sequence tagged sites Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs. . The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontigous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments. . The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database. chroot-autobuild/build/buildd/ncbi-epcr_2.3.10-1_hppa.deb: drwxr-xr-x root/root 0 2008-06-07 20:03 ./ drwxr-xr-x root/root 0 2008-06-07 20:03 ./usr/ drwxr-xr-x root/root 0 2008-06-07 20:03 ./usr/share/ drwxr-xr-x root/root 0 2008-06-07 20:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2008-06-07 20:03 ./usr/share/doc/ncbi-epcr/ -rw-r--r-- root/root 21160 2008-04-28 17:42 ./usr/share/doc/ncbi-epcr/README.html -rw-r--r-- root/root 338 2008-06-07 20:01 ./usr/share/doc/ncbi-epcr/README.Debian -rw-r--r-- root/root 3935 2008-06-07 20:01 ./usr/share/doc/ncbi-epcr/copyright -rw-r--r-- root/root 4807 2008-04-28 17:42 ./usr/share/doc/ncbi-epcr/README.txt.gz -rw-r--r-- root/root 1217 2008-06-07 20:01 ./usr/share/doc/ncbi-epcr/changelog.Debian.gz drwxr-xr-x root/root 0 2008-06-07 20:03 ./usr/share/man/ drwxr-xr-x root/root 0 2008-06-07 20:03 ./usr/share/man/man1/ -rw-r--r-- root/root 833 2008-06-07 20:03 ./usr/share/man/man1/famap.1.gz -rw-r--r-- root/root 1108 2008-06-07 20:03 ./usr/share/man/man1/re-PCR.1.gz -rw-r--r-- root/root 1159 2008-06-07 20:03 ./usr/share/man/man1/e-PCR.1.gz -rw-r--r-- root/root 969 2008-06-07 20:03 ./usr/share/man/man1/fahash.1.gz drwxr-xr-x root/root 0 2008-06-07 20:03 ./usr/bin/ -rwxr-xr-x root/root 98944 2008-06-07 20:03 ./usr/bin/e-PCR -rwxr-xr-x root/root 58656 2008-06-07 20:03 ./usr/bin/famap -rwxr-xr-x root/root 155228 2008-06-07 20:03 ./usr/bin/fahash -rwxr-xr-x root/root 156356 2008-06-07 20:03 ./usr/bin/re-PCR epcr_2.3.10-1_hppa.changes: Format: 1.8 Date: Fri, 06 Jun 2008 09:10:38 +0200 Source: epcr Binary: ncbi-epcr Architecture: hppa Version: 2.3.10-1 Distribution: intrepid Urgency: low Maintainer: Ubuntu/hppa Build Daemon Changed-By: Andreas Tille Description: ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s Changes: epcr (2.3.10-1) unstable; urgency=low . [ Charles Plessy ] * New upstream release applying Andreases patches introduced in the previous Debian package. * debian/patches: removed 10_assert.patch and 10_gcc4.3.patch (Removed debian/patches/series as well.) * debian/copyright converted to machine-readable format. * debian/control: downgraded recommendation on bioperl to `Suggests:' because BioPerl provides a parser for e-PCR results, but e-PCR does not need BioPerl for running. . [ Andreas Tille ] * Raised from priority extra to optional according to policy. * Standards-Version: 3.8.0 (no changes needed) Checksums-Sha1: ef454059d0a6dd1650412db89a8428293e1e7a13 237032 ncbi-epcr_2.3.10-1_hppa.deb Checksums-Sha256: cbdeb9a5239c478da112d774cb3acd2e8cf6f155d4ae2d641a85e345fec45aac 237032 ncbi-epcr_2.3.10-1_hppa.deb Files: 884b5ce4306ec9d6014778c8190ec543 237032 science optional ncbi-epcr_2.3.10-1_hppa.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/epcr-2.3.10 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-630988-1595444/chroot-autobuild --purge intltool-debian groff-base m4 gettext file libhtml-parser-perl intltool automake1.7 cdbs libwww-perl liburi-perl html2text diffstat gettext-base debhelper libhtml-tree-perl ifupdown autotools-dev po-debconf net-tools quilt libxml-parser-perl libmagic1 libhtml-tagset-perl libexpat1 netbase bsdmainutils fdupes update-inetd man-db autoconf (Reading database ... 11393 files and directories currently installed.) Removing cdbs ... Removing debhelper ... Removing po-debconf ... Removing quilt ... Purging configuration files for quilt ... Removing fdupes ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db/examples' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/bug/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/lib/man-db' not empty so not removed. Removing intltool-debian ... Removing groff-base ... Purging configuration files for groff-base ... Removing intltool ... Removing automake1.7 ... Removing html2text ... Purging configuration files for html2text ... Removing diffstat ... Removing autotools-dev ... Removing libxml-parser-perl ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing gettext ... Removing file ... Purging configuration files for file ... Removing libwww-perl ... Removing gettext-base ... Removing libhtml-tree-perl ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing netbase ... Purging configuration files for netbase ... Removing update-inetd ... Purging configuration files for update-inetd ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing ifupdown ... Purging configuration files for ifupdown ... Removing net-tools ... Removing libhtml-tagset-perl ... Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20080607-2003 Build needed 00:01:44, 11552k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '630988-1595444'] Scanning for processes to kill in build 630988-1595444... Scanning for processes to kill in build /home/buildd/build-630988-1595444/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '630988-1595444'] Unmounting chroot for build 630988-1595444... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '630988-1595444'] Removing build 630988-1595444