RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '578777-1518947', '/home/buildd/filecache-default/a6bf56376b81c7fbe85ac303e41af6efa2b59c5f'] Synching the system clock with the buildd NTP service... 18 May 21:28:58 ntpdate[31336]: adjust time server 10.211.37.1 offset 0.000793 sec Unpacking chroot for build 578777-1518947 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '578777-1518947'] Mounting chroot for build 578777-1518947 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '578777-1518947', 'universe'] Attempting OGRE for universe in build-578777-1518947 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '578777-1518947', 'deb http://ftpmaster.internal/ubuntu intrepid main restricted universe'] Overriding sources.list in build-578777-1518947 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '578777-1518947'] Updating debian chroot for build 578777-1518947 Get:1 http://ftpmaster.internal intrepid Release.gpg [191B] Get:2 http://ftpmaster.internal intrepid Release [65.9kB] Get:3 http://ftpmaster.internal intrepid/main Packages [1173kB] Get:4 http://ftpmaster.internal intrepid/restricted Packages [2005B] Get:5 http://ftpmaster.internal intrepid/universe Packages [4423kB] Fetched 5664kB in 6s (862kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: cpp-4.3 g++-4.3 gcc-4.3 gcc-4.3-base libgmp3c2 libmpfr1ldbl libstdc++6-4.3-dev The following packages will be upgraded: apt base-files base-passwd bash binutils bsdutils ccache coreutils cpio cpp cpp-4.2 debconf debconf-english findutils g++ g++-4.2 gcc gcc-4.2 gcc-4.2-base grep gzip hostname lib64gcc1 libacl1 libattr1 libc6 libc6-dev libc6-dev-sparc64 libc6-sparc64 libgcc1 libgomp1 libpam-modules libpam-runtime libpam0g libslang2 libstdc++6 libstdc++6-4.2-dev make makedev mawk mount patch perl perl-base perl-modules python2.5-minimal sed tar util-linux zlib1g 50 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/49.2MB of archives. After unpacking 36.0MB of additional disk space will be used. (Reading database ... 9649 files and directories currently installed.) Preparing to replace mawk 1.3.3-11ubuntu2 (using .../mawk_1.3.3-11.1ubuntu1_sparc.deb) ... Unpacking replacement mawk ... Preparing to replace libc6-dev-sparc64 2.7-10ubuntu3 (using .../libc6-dev-sparc64_2.8~20080505-0ubuntu3_sparc.deb) ... Unpacking replacement libc6-dev-sparc64 ... Preparing to replace libc6-dev 2.7-10ubuntu3 (using .../libc6-dev_2.8~20080505-0ubuntu3_sparc.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc6-sparc64 2.7-10ubuntu3 (using .../libc6-sparc64_2.8~20080505-0ubuntu3_sparc.deb) ... Unpacking replacement libc6-sparc64 ... Selecting previously deselected package gcc-4.3-base. Unpacking gcc-4.3-base (from .../gcc-4.3-base_4.3.0-4ubuntu1_sparc.deb) ... Preparing to replace libgcc1 1:4.2.3-2ubuntu7 (using .../libgcc1_1%3a4.3.0-4ubuntu1_sparc.deb) ... Unpacking replacement libgcc1 ... Setting up gcc-4.3-base (4.3.0-4ubuntu1) ... Setting up libgcc1 (4.3.0-4ubuntu1) ... (Reading database ... 9663 files and directories currently installed.) Preparing to replace libc6 2.7-10ubuntu3 (using .../libc6_2.8~20080505-0ubuntu3_sparc.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.8~20080505-0ubuntu3) ... Installing new version of config file /etc/gai.conf ... (Reading database ... 9667 files and directories currently installed.) Preparing to replace base-passwd 3.5.16 (using .../base-passwd_3.5.17_sparc.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.17) ... (Reading database ... 9668 files and directories currently installed.) Preparing to replace debconf-english 1.5.20 (using .../debconf-english_1.5.21_all.deb) ... Unpacking replacement debconf-english ... Preparing to replace debconf 1.5.20 (using .../debconf_1.5.21_all.deb) ... Unpacking replacement debconf ... Preparing to replace libpam-runtime 0.99.7.1-5ubuntu6 (using .../libpam-runtime_0.99.7.1-5ubuntu7_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (0.99.7.1-5ubuntu7) ... (Reading database ... 9668 files and directories currently installed.) Preparing to replace libpam0g 0.99.7.1-5ubuntu6 (using .../libpam0g_0.99.7.1-5ubuntu7_sparc.deb) ... Unpacking replacement libpam0g ... Setting up debconf-english (1.5.21) ... Setting up debconf (1.5.21) ... Setting up libpam0g (0.99.7.1-5ubuntu7) ... (Reading database ... 9668 files and directories currently installed.) Preparing to replace libpam-modules 0.99.7.1-5ubuntu6 (using .../libpam-modules_0.99.7.1-5ubuntu7_sparc.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (0.99.7.1-5ubuntu7) ... (Reading database ... 9668 files and directories currently installed.) Preparing to replace base-files 4.0.1ubuntu5 (using .../base-files_4.0.1ubuntu6_sparc.deb) ... Unpacking replacement base-files ... Setting up mawk (1.3.3-11.1ubuntu1) ... Setting up base-files (4.0.1ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 9668 files and directories currently installed.) Preparing to replace bash 3.2-0ubuntu16 (using .../bash_3.2-4ubuntu1_sparc.deb) ... Unpacking replacement bash ... Setting up bash (3.2-4ubuntu1) ... Installing new version of config file /etc/skel/.bashrc ... Installing new version of config file /etc/skel/.profile ... (Reading database ... 9668 files and directories currently installed.) Preparing to replace coreutils 5.97-5.6ubuntu1 (using .../coreutils_6.10-3ubuntu2_sparc.deb) ... Unpacking replacement coreutils ... Setting up coreutils (6.10-3ubuntu2) ... (Reading database ... 9664 files and directories currently installed.) Preparing to replace findutils 4.2.32-1ubuntu2 (using .../findutils_4.4.0-2ubuntu2_sparc.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.0-2ubuntu2) ... (Reading database ... 9665 files and directories currently installed.) Preparing to replace grep 2.5.3~dfsg-3 (using .../grep_2.5.3~dfsg-5_sparc.deb) ... Unpacking replacement grep ... Setting up grep (2.5.3~dfsg-5) ... (Reading database ... 9665 files and directories currently installed.) Preparing to replace gzip 1.3.12-3.2 (using .../gzip_1.3.12-6_sparc.deb) ... Unpacking replacement gzip ... Setting up gzip (1.3.12-6) ... (Reading database ... 9665 files and directories currently installed.) Preparing to replace hostname 2.94 (using .../hostname_2.95_sparc.deb) ... Unpacking replacement hostname ... Setting up hostname (2.95) ... (Reading database ... 9666 files and directories currently installed.) Preparing to replace mount 2.13.1-5ubuntu1 (using .../mount_2.14~rc2-0ubuntu1_sparc.deb) ... Unpacking replacement mount ... Setting up mount (2.14~rc2-0ubuntu1) ... (Reading database ... 9666 files and directories currently installed.) Preparing to replace perl-modules 5.8.8-12 (using .../perl-modules_5.10.0-10_all.deb) ... Unpacking replacement perl-modules ... dpkg: warning - unable to delete old directory `/usr/share/perl/5.8.8/unicore': Directory not empty dpkg: warning - unable to delete old directory `/usr/share/perl/5.8.8/Text': Directory not empty dpkg: warning - unable to delete old directory `/usr/share/perl/5.8.8/Getopt': Directory not empty dpkg: warning - unable to delete old directory `/usr/share/perl/5.8.8/File/Spec': Directory not empty dpkg: warning - unable to delete old directory `/usr/share/perl/5.8.8/File': Directory not empty dpkg: warning - unable to delete old directory `/usr/share/perl/5.8.8': Directory not empty Preparing to replace perl 5.8.8-12 (using .../perl_5.10.0-10_sparc.deb) ... Unpacking replacement perl ... dpkg: warning - unable to delete old directory `/usr/lib/perl/5.8.8/IO': Directory not empty dpkg: warning - unable to delete old directory `/usr/lib/perl/5.8.8/B': Directory not empty dpkg: warning - unable to delete old directory `/usr/lib/perl/5.8.8/auto/POSIX': Directory not empty dpkg: warning - unable to delete old directory `/usr/lib/perl/5.8.8/auto': Directory not empty dpkg: warning - unable to delete old directory `/usr/lib/perl/5.8.8': Directory not empty Preparing to replace perl-base 5.8.8-12 (using .../perl-base_5.10.0-10_sparc.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.10.0-10) ... (Reading database ... 9902 files and directories currently installed.) Preparing to replace sed 4.1.5-5 (using .../archives/sed_4.1.5-8_sparc.deb) ... Unpacking replacement sed ... Setting up sed (4.1.5-8) ... (Reading database ... 9902 files and directories currently installed.) Preparing to replace tar 1.19-3 (using .../archives/tar_1.20-1_sparc.deb) ... Unpacking replacement tar ... Setting up tar (1.20-1) ... (Reading database ... 9902 files and directories currently installed.) Preparing to replace util-linux 2.13.1-5ubuntu1 (using .../util-linux_2.14~rc2-0ubuntu1_sparc.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.14~rc2-0ubuntu1) ... (Reading database ... 9912 files and directories currently installed.) Preparing to replace bsdutils 1:2.13.1-5ubuntu1 (using .../bsdutils_1%3a2.14~rc2-0ubuntu1_sparc.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (2.14~rc2-0ubuntu1) ... (Reading database ... 9912 files and directories currently installed.) Preparing to replace libstdc++6 4.2.3-2ubuntu7 (using .../libstdc++6_4.3.0-4ubuntu1_sparc.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.3.0-4ubuntu1) ... (Reading database ... 9912 files and directories currently installed.) Preparing to replace apt 0.7.9ubuntu17 (using .../apt_0.7.14ubuntu2_sparc.deb) ... Unpacking replacement apt ... Setting up apt (0.7.14ubuntu2) ... Installing new version of config file /etc/apt/apt.conf.d/01ubuntu ... Installing new version of config file /etc/cron.daily/apt ... (Reading database ... 9912 files and directories currently installed.) Preparing to replace libattr1 1:2.4.39-1 (using .../libattr1_1%3a2.4.41-1_sparc.deb) ... Unpacking replacement libattr1 ... Preparing to replace libacl1 2.2.45-1 (using .../libacl1_2.2.47-2_sparc.deb) ... Unpacking replacement libacl1 ... Setting up libattr1 (2.4.41-1) ... Setting up libacl1 (2.2.47-2) ... (Reading database ... 9910 files and directories currently installed.) Preparing to replace zlib1g 1:1.2.3.3.dfsg-7ubuntu1 (using .../zlib1g_1%3a1.2.3.3.dfsg-12ubuntu1_sparc.deb) ... Unpacking replacement zlib1g ... Setting up zlib1g (1.2.3.3.dfsg-12ubuntu1) ... (Reading database ... 9910 files and directories currently installed.) Preparing to replace python2.5-minimal 2.5.2-2ubuntu4 (using .../python2.5-minimal_2.5.2-5ubuntu1_sparc.deb) ... Unpacking replacement python2.5-minimal ... Setting up python2.5-minimal (2.5.2-5ubuntu1) ... (Reading database ... 9910 files and directories currently installed.) Preparing to replace cpio 2.9-6ubuntu1 (using .../archives/cpio_2.9-13_sparc.deb) ... Unpacking replacement cpio ... Preparing to replace libslang2 2.1.3-2 (using .../libslang2_2.1.3-3_sparc.deb) ... Unpacking replacement libslang2 ... Preparing to replace makedev 2.3.1-84ubuntu1 (using .../makedev_2.3.1-88_all.deb) ... Removing obsolete conffile /etc/init.d/makedev ... Removing any system startup links for /etc/init.d/makedev ... /etc/rc1.d/K20makedev /etc/rc2.d/S20makedev /etc/rc3.d/S20makedev /etc/rc4.d/S20makedev /etc/rc5.d/S20makedev Unpacking replacement makedev ... Selecting previously deselected package libgmp3c2. Unpacking libgmp3c2 (from .../libgmp3c2_2%3a4.2.2+dfsg-1ubuntu2_sparc.deb) ... Selecting previously deselected package libmpfr1ldbl. Unpacking libmpfr1ldbl (from .../libmpfr1ldbl_2.3.1.dfsg.1-2ubuntu1_sparc.deb) ... Selecting previously deselected package cpp-4.3. Unpacking cpp-4.3 (from .../cpp-4.3_4.3.0-4ubuntu1_sparc.deb) ... Preparing to replace cpp 4:4.2.3-1ubuntu3 (using .../cpp_4%3a4.3.0-5ubuntu2_sparc.deb) ... Unpacking replacement cpp ... Preparing to replace binutils 2.18.1~cvs20080103-0ubuntu1 (using .../binutils_2.18.50.20080509-0ubuntu1_sparc.deb) ... Unpacking replacement binutils ... Preparing to replace ccache 2.4-11 (using .../ccache_2.4-15_sparc.deb) ... Unpacking replacement ccache ... Preparing to replace lib64gcc1 1:4.2.3-2ubuntu7 (using .../lib64gcc1_1%3a4.3.0-4ubuntu1_sparc.deb) ... Unpacking replacement lib64gcc1 ... Preparing to replace libgomp1 4.2.3-2ubuntu7 (using .../libgomp1_4.3.0-4ubuntu1_sparc.deb) ... Unpacking replacement libgomp1 ... Preparing to replace g++-4.2 4.2.3-2ubuntu7 (using .../g++-4.2_4.2.3-4ubuntu1_sparc.deb) ... Unpacking replacement g++-4.2 ... Preparing to replace libstdc++6-4.2-dev 4.2.3-2ubuntu7 (using .../libstdc++6-4.2-dev_4.2.3-4ubuntu1_sparc.deb) ... Unpacking replacement libstdc++6-4.2-dev ... Preparing to replace gcc-4.2 4.2.3-2ubuntu7 (using .../gcc-4.2_4.2.3-4ubuntu1_sparc.deb) ... Unpacking replacement gcc-4.2 ... Preparing to replace cpp-4.2 4.2.3-2ubuntu7 (using .../cpp-4.2_4.2.3-4ubuntu1_sparc.deb) ... Unpacking replacement cpp-4.2 ... Preparing to replace gcc-4.2-base 4.2.3-2ubuntu7 (using .../gcc-4.2-base_4.2.3-4ubuntu1_sparc.deb) ... Unpacking replacement gcc-4.2-base ... Selecting previously deselected package gcc-4.3. Unpacking gcc-4.3 (from .../gcc-4.3_4.3.0-4ubuntu1_sparc.deb) ... Selecting previously deselected package libstdc++6-4.3-dev. Unpacking libstdc++6-4.3-dev (from .../libstdc++6-4.3-dev_4.3.0-4ubuntu1_sparc.deb) ... Selecting previously deselected package g++-4.3. Unpacking g++-4.3 (from .../g++-4.3_4.3.0-4ubuntu1_sparc.deb) ... Preparing to replace gcc 4:4.2.3-1ubuntu3 (using .../gcc_4%3a4.3.0-5ubuntu2_sparc.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.2.3-1ubuntu3 (using .../g++_4%3a4.3.0-5ubuntu2_sparc.deb) ... Unpacking replacement g++ ... Preparing to replace make 3.81-3build1 (using .../archives/make_3.81-4_sparc.deb) ... Unpacking replacement make ... Preparing to replace patch 2.5.9-4 (using .../patch_2.5.9-5_sparc.deb) ... Unpacking replacement patch ... Setting up libc6-dev (2.8~20080505-0ubuntu3) ... Setting up libc6-sparc64 (2.8~20080505-0ubuntu3) ... Setting up libc6-dev-sparc64 (2.8~20080505-0ubuntu3) ... Setting up cpio (2.9-13) ... Setting up libslang2 (2.1.3-3) ... Setting up makedev (2.3.1-88) ... Setting up libgmp3c2 (4.2.2+dfsg-1ubuntu2) ... Setting up libmpfr1ldbl (2.3.1.dfsg.1-2ubuntu1) ... Setting up cpp-4.3 (4.3.0-4ubuntu1) ... Setting up cpp (4.3.0-5ubuntu2) ... Setting up binutils (2.18.50.20080509-0ubuntu1) ... Setting up ccache (2.4-15) ... Setting up lib64gcc1 (4.3.0-4ubuntu1) ... Setting up libgomp1 (4.3.0-4ubuntu1) ... Setting up gcc-4.2-base (4.2.3-4ubuntu1) ... Setting up cpp-4.2 (4.2.3-4ubuntu1) ... Setting up gcc-4.2 (4.2.3-4ubuntu1) ... Setting up gcc-4.3 (4.3.0-4ubuntu1) ... Setting up gcc (4.3.0-5ubuntu2) ... Setting up make (3.81-4) ... Setting up patch (2.5.9-5) ... Setting up libstdc++6-4.3-dev (4.3.0-4ubuntu1) ... Setting up perl-modules (5.10.0-10) ... Setting up g++-4.2 (4.2.3-4ubuntu1) ... Setting up g++-4.3 (4.3.0-4ubuntu1) ... Setting up g++ (4.3.0-5ubuntu2) ... Setting up perl (5.10.0-10) ... Setting up libstdc++6-4.2-dev (4.2.3-4ubuntu1) ... modified: motd RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '578777-1518947', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=intrepid', '--comp=universe', 'epcr_2.3.9-1.dsc'] Initiating build Automatic build of epcr_2.3.9-1 on sejong by sbuild/sparc 1.170.5 Build started at 20080518-2130 ****************************************************************************** epcr_2.3.9-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5.0), quilt, cdbs Checking for already installed source dependencies... debhelper: missing quilt: missing cdbs: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper quilt cdbs Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-4.2 upstart-compat-sysv startup-tasks system-services libstdc++6-4.2-dev upstart Use 'apt-get autoremove' to remove them. The following extra packages will be installed: autoconf automake1.7 autotools-dev bsdmainutils diffstat fdupes file gettext gettext-base groff-base html2text ifupdown intltool intltool-debian libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 liburi-perl libwww-perl libxml-parser-perl m4 man-db net-tools netbase po-debconf update-inetd Suggested packages: autobook autoconf-archive autoconf-doc autoconf2.13 gnu-standards libtool vacation wamerican wordlist whois devscripts doc-base dh-make cvs gettext-doc groff iproute dhcp3-client dhcp-client ppp libio-socket-ssl-perl less www-browser procmail graphviz Recommended packages: automake automaken curl wget lynx libcompress-zlib-perl libhtml-format-perl libmailtools-perl libmail-box-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake1.7 autotools-dev bsdmainutils cdbs debhelper diffstat fdupes file gettext gettext-base groff-base html2text ifupdown intltool intltool-debian libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 liburi-perl libwww-perl libxml-parser-perl m4 man-db net-tools netbase po-debconf quilt update-inetd 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/9244kB of archives. After unpacking 30.8MB of additional disk space will be used. Selecting previously deselected package gettext-base. (Reading database ... 10688 files and directories currently installed.) Unpacking gettext-base (from .../gettext-base_0.17-2ubuntu1_sparc.deb) ... Selecting previously deselected package net-tools. Unpacking net-tools (from .../net-tools_1.60-19ubuntu1_sparc.deb) ... Selecting previously deselected package ifupdown. Unpacking ifupdown (from .../ifupdown_0.6.8ubuntu8_sparc.deb) ... Selecting previously deselected package update-inetd. Unpacking update-inetd (from .../update-inetd_4.30_all.deb) ... Selecting previously deselected package netbase. Unpacking netbase (from .../netbase_4.30ubuntu1_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu2_sparc.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_4.24-2_sparc.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_4.24-2_sparc.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-20_sparc.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-0ubuntu1_sparc.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.35.dfsg.1-1_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.56-1build1_sparc.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.812-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build1_sparc.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.2-1_sparc.deb) ... Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.11-1_sparc.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.61-7_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20080123.1_all.deb) ... Selecting previously deselected package automake1.7. Unpacking automake1.7 (from .../automake1.7_1.7.9-9_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-3build2_sparc.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-2ubuntu1_sparc.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.12.1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.0.8ubuntu1_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-1_sparc.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.37.1-1ubuntu1_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.52ubuntu1_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.45-2_sparc.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../archives/quilt_0.46-4_all.deb) ... Setting up gettext-base (0.17-2ubuntu1) ... Setting up net-tools (1.60-19ubuntu1) ... Setting up ifupdown (0.6.8ubuntu8) ... ifupdown.postinst: Warning: No 'iface lo' definition found in /etc/network/interfaces ifupdown.postinst: Warning: No 'auto lo' statement found in /etc/network/interfaces Setting up update-inetd (4.30) ... Setting up netbase (4.30ubuntu1) ... Setting up bsdmainutils (6.1.10ubuntu2) ... Setting up libmagic1 (4.24-2) ... Setting up file (4.24-2) ... Setting up groff-base (1.18.1.1-20) ... Setting up libexpat1 (2.0.1-0ubuntu1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up liburi-perl (1.35.dfsg.1-1) ... Setting up libhtml-parser-perl (3.56-1build1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up libwww-perl (5.812-1) ... Setting up libxml-parser-perl (2.36-1.1build1) ... Setting up man-db (2.5.2-1) ... Building database of manual pages ... Setting up m4 (1.4.11-1) ... Setting up autoconf (2.61-7) ... Setting up autotools-dev (20080123.1) ... Setting up automake1.7 (1.7.9-9) ... Setting up html2text (1.3.2a-3build2) ... Setting up gettext (0.17-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.12.1) ... Setting up debhelper (7.0.8ubuntu1) ... Setting up fdupes (1.50-PR2-1) ... Setting up intltool (0.37.1-1ubuntu1) ... Setting up cdbs (0.4.52ubuntu1) ... Setting up diffstat (1.45-2) ... Setting up quilt (0.46-4) ... modified: motd Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.8~20080505-0ubuntu3 make_3.81-4 dpkg-dev_1.14.16.6ubuntu3 gcc-4.3_4.3.0-4ubuntu1 g++-4.3_4.3.0-4ubuntu1 binutils_2.18.50.20080509-0ubuntu1 libstdc++6_4.3.0-4ubuntu1 libstdc++6-4.3-dev_4.3.0-4ubuntu1 ------------------------------------------------------------------------------ dpkg-source: extracting epcr in epcr-2.3.9 dpkg-source: unpacking epcr_2.3.9.orig.tar.gz dpkg-source: applying /home/buildd/build-578777-1518947/epcr_2.3.9-1.diff.gz dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: source package epcr dpkg-buildpackage: source version 2.3.9-1 dpkg-buildpackage: host architecture sparc /usr/bin/fakeroot debian/rules clean test -x debian/rules test "`id -u`" = 0 /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/epcr-2.3.9' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/epcr-2.3.9' if [ -d "." ] ; then \ cd . && QUILT_PATCHES=patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi No patch removed if [ -n "patches" ] ; then \ if [ -L ./patches ] ; then \ rm ./patches ; \ fi ; \ fi rm -rf ./.pc rm -f debian/stamp-patch* dh_clean /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.9\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1" CXXFLAGS="-g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.9\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions `getconf LFS_LDFLAGS` `getconf LFS_LIBS` -L." -k clean make[1]: Entering directory `/build/buildd/epcr-2.3.9' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ /usr/bin/make -ef ./stand/Makefile.$i clean ; \ done make[2]: Entering directory `/build/buildd/epcr-2.3.9' rm ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o defaults.h~ build_cfg.h~ bin-io.hpp~ strref.hpp~ faread.hpp~ fast_seqio.hpp~ hashset.hpp~ minilcs.hpp~ align.hpp~ sts_i.hpp~ stsmatch_i.hpp~ stsmatch_m.hpp~ stsmatch.hpp~ fahash.hpp~ sts.hpp~ ./faread.cpp~ ./fast_seqio_read.cpp~ ./fast_seqio_write.cpp~ ./hashset.cpp~ ./mmap.cpp~ ./align.cpp~ ./stsmatch_i.cpp~ ./stsmatch_m.cpp~ ./stsfilter.cpp~ ./stsmatch.cpp~ ./fahash_create.cpp~ ./fahash_create1.cpp~ ./fahash_create2.cpp~ ./fahash_lookup.cpp~ rm: cannot remove `./faread.o': No such file or directory rm: cannot remove `./fast_seqio_read.o': No such file or directory rm: cannot remove `./fast_seqio_write.o': No such file or directory rm: cannot remove `./hashset.o': No such file or directory rm: cannot remove `./mmap.o': No such file or directory rm: cannot remove `./align.o': No such file or directory rm: cannot remove `./stsmatch_i.o': No such file or directory rm: cannot remove `./stsmatch_m.o': No such file or directory rm: cannot remove `./stsfilter.o': No such file or directory rm: cannot remove `./stsmatch.o': No such file or directory rm: cannot remove `./fahash_create.o': No such file or directory rm: cannot remove `./fahash_create1.o': No such file or directory rm: cannot remove `./fahash_create2.o': No such file or directory rm: cannot remove `./fahash_lookup.o': No such file or directory rm: cannot remove `defaults.h~': No such file or directory rm: cannot remove `build_cfg.h~': No such file or directory rm: cannot remove `bin-io.hpp~': No such file or directory rm: cannot remove `strref.hpp~': No such file or directory rm: cannot remove `faread.hpp~': No such file or directory rm: cannot remove `fast_seqio.hpp~': No such file or directory rm: cannot remove `hashset.hpp~': No such file or directory rm: cannot remove `minilcs.hpp~': No such file or directory rm: cannot remove `align.hpp~': No such file or directory rm: cannot remove `sts_i.hpp~': No such file or directory rm: cannot remove `stsmatch_i.hpp~': No such file or directory rm: cannot remove `stsmatch_m.hpp~': No such file or directory rm: cannot remove `stsmatch.hpp~': No such file or directory rm: cannot remove `fahash.hpp~': No such file or directory rm: cannot remove `sts.hpp~': No such file or directory rm: cannot remove `./faread.cpp~': No such file or directory rm: cannot remove `./fast_seqio_read.cpp~': No such file or directory rm: cannot remove `./fast_seqio_write.cpp~': No such file or directory rm: cannot remove `./hashset.cpp~': No such file or directory rm: cannot remove `./mmap.cpp~': No such file or directory rm: cannot remove `./align.cpp~': No such file or directory rm: cannot remove `./stsmatch_i.cpp~': No such file or directory rm: cannot remove `./stsmatch_m.cpp~': No such file or directory rm: cannot remove `./stsfilter.cpp~': No such file or directory rm: cannot remove `./stsmatch.cpp~': No such file or directory rm: cannot remove `./fahash_create.cpp~': No such file or directory rm: cannot remove `./fahash_create1.cpp~': No such file or directory rm: cannot remove `./fahash_create2.cpp~': No such file or directory rm: cannot remove `./fahash_lookup.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[2]: Entering directory `/build/buildd/epcr-2.3.9' rm ./e-PCR_main.o ./e-PCR_main.cpp~ rm: cannot remove `./e-PCR_main.o': No such file or directory rm: cannot remove `./e-PCR_main.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[2]: Entering directory `/build/buildd/epcr-2.3.9' rm ./famap_main.o ./famap_main.cpp~ rm: cannot remove `./famap_main.o': No such file or directory rm: cannot remove `./famap_main.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[2]: Entering directory `/build/buildd/epcr-2.3.9' rm ./fahash_main.o ./fahash_main.cpp~ rm: cannot remove `./fahash_main.o': No such file or directory rm: cannot remove `./fahash_main.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[2]: Entering directory `/build/buildd/epcr-2.3.9' rm ./re-PCR_main.o ./re-PCR_main.cpp~ rm: cannot remove `./re-PCR_main.o': No such file or directory rm: cannot remove `./re-PCR_main.cpp~': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[1]: Leaving directory `/build/buildd/epcr-2.3.9' rm -f debian/stamp-makefile-build rm -f epcr rm -f libepcr.a rm -f e-PCR famap fahash re-PCR debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/epcr-2.3.9' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/epcr-2.3.9' if [ -n "patches" ] ; then \ if [ -L ./patches ] ; then : ; else \ (cd .; ln -s /build/buildd/epcr-2.3.9/debian/patches patches) ; \ fi ; \ fi cd . && QUILT_PATCHES=patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 10_assert.patch patching file e-PCR_main.cpp Applying patch 10_gcc4.3.patch patching file re-PCR_main.cpp patching file strref.hpp patching file fahash_main.cpp patching file bin-io.hpp patching file e-PCR_main.cpp patching file famap_main.cpp patching file fahash_create2.cpp Now at patch 10_gcc4.3.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/buildd/epcr-2.3.9' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/buildd/epcr-2.3.9' /usr/bin/make -C . CFLAGS="-g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.9\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1" CXXFLAGS="-g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 `getconf LFS_CFLAGS` -DVERSION=\\\"2.3.9\\\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions `getconf LFS_LDFLAGS` `getconf LFS_LIBS` -L." make[1]: Entering directory `/build/buildd/epcr-2.3.9' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ /usr/bin/make -ef ./stand/Makefile.$i all ; \ done make[2]: Entering directory `/build/buildd/epcr-2.3.9' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c faread.cpp -o faread.o faread.cpp: In member function 'void ncbi::pcr_tools::CFastaReader::SeqlineCbk(ncbi::pcr_tools::IFastaReaderCallback*, char*, unsigned int)': faread.cpp:160: warning: array subscript has type 'char' faread.cpp:163: warning: array subscript has type 'char' faread.cpp:167: warning: array subscript has type 'char' g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c fast_seqio_read.cpp -o fast_seqio_read.o fast_seqio_read.cpp: In member function 'void ncbi::pcr_tools::CFastaMap::ReadEpilogue()': fast_seqio_read.cpp:107: warning: unused variable 'filesize' g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c fast_seqio_write.cpp -o fast_seqio_write.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c hashset.cpp -o hashset.o hashset.cpp: In member function 'bool ncbi::pcr_tools::CHashSet::Begin(const char*)': hashset.cpp:92: warning: array subscript has type 'char' hashset.cpp:103: warning: array subscript has type 'char' hashset.cpp: At global scope: hashset.cpp:52: warning: 'char* s_BitsRepr(unsigned int, int)' defined but not used g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c mmap.cpp -o mmap.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c align.cpp -o align.o align.cpp: In function 'char ncbi::pcr_tools::UCase(char)': align.cpp:66: warning: array subscript has type 'char' g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c stsmatch_i.cpp -o stsmatch_i.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c stsmatch_m.cpp -o stsmatch_m.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c stsfilter.cpp -o stsfilter.o stsfilter.cpp: In static member function 'static bool ncbi::pcr_tools::CPcrMachinePostprocess::OrderByPos2Pos1(const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&, const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&)': stsfilter.cpp:47: warning: suggest parentheses around && within || stsfilter.cpp: In static member function 'static int ncbi::pcr_tools::CPcrMachinePostprocess::Compare(const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&, const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&, unsigned int, unsigned int)': stsfilter.cpp:59: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:59: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:60: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:60: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:64: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:64: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:67: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:68: warning: comparison between signed and unsigned integer expressions stsfilter.cpp: In static member function 'static bool ncbi::pcr_tools::CPcrMachinePostprocess::Overlap(unsigned int, unsigned int, const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&, const ncbi::pcr_tools::CPcrMachinePostprocess::SOutput&)': stsfilter.cpp:77: warning: comparison between signed and unsigned integer expressions stsfilter.cpp:77: warning: comparison between signed and unsigned integer expressions g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c stsmatch.cpp -o stsmatch.o stsmatch.cpp: In member function 'virtual bool ncbi::pcr_tools::CStsFileCallbackDefault::Error(ncbi::pcr_tools::IStsFileCallback::EError)': stsmatch.cpp:80: warning: enumeration value 'eErrTOTAL' not handled in switch g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c fahash_create.cpp -o fahash_create.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c fahash_create1.cpp -o fahash_create1.o g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c fahash_create2.cpp -o fahash_create2.o fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::AddSequence(const char*, unsigned int, off64_t)': fahash_create2.cpp:65: warning: comparison between signed and unsigned integer expressions fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::DumpTables()': fahash_create2.cpp:117: warning: comparison between signed and unsigned integer expressions fahash_create2.cpp:120: warning: comparison between signed and unsigned integer expressions fahash_create2.cpp:149: warning: comparison between signed and unsigned integer expressions g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c fahash_lookup.cpp -o fahash_lookup.o fahash_lookup.cpp: In member function 'bool SMatchPos::operator<(const SMatchPos&) const': fahash_lookup.cpp:343: warning: suggest parentheses around && within || fahash_lookup.cpp: In member function 'bool CMatchSts::SHit::operator<(const CMatchSts::SHit&) const': fahash_lookup.cpp:386: warning: suggest parentheses around && within || fahash_lookup.cpp:386: warning: suggest parentheses around && within || fahash_lookup.cpp:386: warning: suggest parentheses around && within || fahash_lookup.cpp: In static member function 'static bool CMatchSts::SHit::OrderByPos2Pos1(const CMatchSts::SHit&, const CMatchSts::SHit&)': fahash_lookup.cpp:435: warning: suggest parentheses around && within || rm -f libepcr.a ar cru libepcr.a ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o ranlib libepcr.a make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[2]: Entering directory `/build/buildd/epcr-2.3.9' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c e-PCR_main.cpp -o e-PCR_main.o e-PCR_main.cpp: In member function 'void CPcrProgressCallback::Report(unsigned int, bool)': e-PCR_main.cpp:373: warning: conversion lacks type at end of format rm -f e-PCR g++ -Wl,-Bsymbolic-functions -L. -o e-PCR ./e-PCR_main.o -lepcr make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[2]: Entering directory `/build/buildd/epcr-2.3.9' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c famap_main.cpp -o famap_main.o famap_main.cpp: In member function 'int CMain::Dump()': famap_main.cpp:170: warning: comparison between signed and unsigned integer expressions famap_main.cpp:172: warning: comparison between signed and unsigned integer expressions famap_main.cpp: In member function 'int CMain::List()': famap_main.cpp:205: warning: comparison between signed and unsigned integer expressions famap_main.cpp:207: warning: comparison between signed and unsigned integer expressions famap_main.cpp: In member function 'int CMain::Execute()': famap_main.cpp:144: warning: control reaches end of non-void function rm -f famap g++ -Wl,-Bsymbolic-functions -L. -o famap ./famap_main.o -lepcr make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[2]: Entering directory `/build/buildd/epcr-2.3.9' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c fahash_main.cpp -o fahash_main.o fahash_main.cpp: In member function 'int CMain::Execute()': fahash_main.cpp:256: warning: enumeration value 'eNone' not handled in switch fahash_main.cpp: In member function 'int CMain::Stat()': fahash_main.cpp:292: warning: comparison between signed and unsigned integer expressions fahash_main.cpp: In member function 'int CMain::Execute()': fahash_main.cpp:260: warning: control reaches end of non-void function rm -f fahash g++ -Wl,-Bsymbolic-functions -L. -o fahash ./fahash_main.o -lepcr make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[2]: Entering directory `/build/buildd/epcr-2.3.9' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -g -O2 -g -Wall -O2 -I. -g2 -DDEALLOCATE=0 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DVERSION=\"2.3.9\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=9 -DSTANDALONE=1 -c re-PCR_main.cpp -o re-PCR_main.o re-PCR_main.cpp: In member function 'int CMain::Execute()': re-PCR_main.cpp:344: warning: enumeration value 'eNone' not handled in switch re-PCR_main.cpp: In member function 'int CMain::STSLookup()': re-PCR_main.cpp:485: warning: comparison between signed and unsigned integer expressions re-PCR_main.cpp:442: warning: unused variable 'tcount' re-PCR_main.cpp: In member function 'int CMain::Execute()': re-PCR_main.cpp:348: warning: control reaches end of non-void function rm -f re-PCR g++ -Wl,-Bsymbolic-functions -L. -o re-PCR ./re-PCR_main.o -lepcr make[2]: Leaving directory `/build/buildd/epcr-2.3.9' make[1]: Leaving directory `/build/buildd/epcr-2.3.9' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules test "`id -u`" = 0 dh_clean -k dh_installdirs -A mkdir -p "." DEB_MAKE_CHECK_TARGET unset, not running checks DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target dh_installdirs -pncbi-epcr dh_installdocs -pncbi-epcr dh_installexamples -pncbi-epcr dh_installman -pncbi-epcr dh_installinfo -pncbi-epcr dh_installmenu -pncbi-epcr dh_installcron -pncbi-epcr dh_installinit -pncbi-epcr dh_installdebconf -pncbi-epcr dh_installemacsen -pncbi-epcr dh_installcatalogs -pncbi-epcr dh_installpam -pncbi-epcr dh_installlogrotate -pncbi-epcr dh_installlogcheck -pncbi-epcr dh_installchangelogs -pncbi-epcr dh_installudev -pncbi-epcr dh_lintian -pncbi-epcr dh_install -pncbi-epcr dh_link -pncbi-epcr dh_installmime -pncbi-epcr dh_strip -pncbi-epcr dh_strip debug symbol extraction: all non-arch-all packages for this build platform sparc: ncbi-epcr dh_strip debug symbol extraction: packages to act on: ncbi-epcr dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/ncbi-epcr-dbgsym/DEBIAN/control, package ncbi-epcr-dbgsym, directory ./debian/ncbi-epcr-dbgsym pkgstriptranslations: ncbi-epcr-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `/build/buildd/epcr-2.3.9/debian/ncbi-epcr-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `ncbi-epcr-dbgsym' in `../ncbi-epcr-dbgsym_2.3.9-1_sparc.ddeb'. dh_compress -pncbi-epcr dh_fixperms -pncbi-epcr dh_makeshlibs -pncbi-epcr dh_installdeb -pncbi-epcr dh_perl -pncbi-epcr dh_shlibdeps -pncbi-epcr dh_gencontrol -pncbi-epcr dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends} # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/ncbi-epcr/usr/share/doc ] || \ [ ! -d debian/ncbi-epcr/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/ncbi-epcr/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/ncbi-epcr/usr/share/doc/ncbi-epcr; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/ncbi-epcr/usr/share/doc/ncbi-epcr/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in ncbi-epcr to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/ncbi-epcr/usr/share/gnome/help ]; then \ cd debian/ncbi-epcr && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p ncbi-epcr dh_md5sums -pncbi-epcr dh_builddeb -pncbi-epcr pkgstriptranslations: processing control file: ./debian/ncbi-epcr/DEBIAN/control, package ncbi-epcr, directory ./debian/ncbi-epcr pkgstriptranslations: ncbi-epcr does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `debian/ncbi-epcr/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `ncbi-epcr' in `../ncbi-epcr_2.3.9-1_sparc.deb'. dpkg-genchanges -B -mUbuntu/sparc Build Daemon >../epcr_2.3.9-1_sparc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20080518-2132 Publishing debug debs. chroot-autobuild/build/buildd/ncbi-epcr_2.3.9-1_sparc.deb: new debian package, version 2.0. size 200682 bytes: control archive= 1441 bytes. 1553 bytes, 30 lines control 812 bytes, 13 lines md5sums Package: ncbi-epcr Source: epcr Version: 2.3.9-1 Architecture: sparc Maintainer: Ubuntu MOTU Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 528 Depends: libc6 (>= 2.7-1), libgcc1 (>= 1:4.2.1-4), libstdc++6 (>= 4.2.1-4) Recommends: bioperl Section: science Priority: extra Homepage: http://www.ncbi.nlm.nih.gov/sutils/e-pcr/ Description: Tool to test a DNA sequence for the presence of sequence tagged sites Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs. . The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontigous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments. . The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database. chroot-autobuild/build/buildd/ncbi-epcr_2.3.9-1_sparc.deb: drwxr-xr-x root/root 0 2008-05-18 21:32:03 ./ drwxr-xr-x root/root 0 2008-05-18 21:32:04 ./usr/ drwxr-xr-x root/root 0 2008-05-18 21:32:02 ./usr/share/ drwxr-xr-x root/root 0 2008-05-18 21:32:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2008-05-18 21:32:10 ./usr/share/doc/ncbi-epcr/ -rw-r--r-- root/root 21159 2008-03-27 14:15:05 ./usr/share/doc/ncbi-epcr/README.html -rw-r--r-- root/root 338 2008-05-18 21:30:59 ./usr/share/doc/ncbi-epcr/README.Debian -rw-r--r-- root/root 670 2008-05-18 21:30:59 ./usr/share/doc/ncbi-epcr/copyright -rw-r--r-- root/root 4807 2008-03-27 14:15:05 ./usr/share/doc/ncbi-epcr/README.txt.gz -rw-r--r-- root/root 929 2008-05-18 21:30:59 ./usr/share/doc/ncbi-epcr/changelog.Debian.gz drwxr-xr-x root/root 0 2008-05-18 21:32:02 ./usr/share/man/ drwxr-xr-x root/root 0 2008-05-18 21:32:10 ./usr/share/man/man1/ -rw-r--r-- root/root 833 2008-05-18 21:32:02 ./usr/share/man/man1/famap.1.gz -rw-r--r-- root/root 1108 2008-05-18 21:32:02 ./usr/share/man/man1/re-PCR.1.gz -rw-r--r-- root/root 1159 2008-05-18 21:32:02 ./usr/share/man/man1/e-PCR.1.gz -rw-r--r-- root/root 969 2008-05-18 21:32:02 ./usr/share/man/man1/fahash.1.gz drwxr-xr-x root/root 0 2008-05-18 21:32:10 ./usr/bin/ -rwxr-xr-x root/root 77832 2008-05-18 21:32:10 ./usr/bin/e-PCR -rwxr-xr-x root/root 54008 2008-05-18 21:32:10 ./usr/bin/famap -rwxr-xr-x root/root 150944 2008-05-18 21:32:10 ./usr/bin/fahash -rwxr-xr-x root/root 135080 2008-05-18 21:32:10 ./usr/bin/re-PCR epcr_2.3.9-1_sparc.changes: Format: 1.7 Date: Wed, 16 Apr 2008 14:38:00 +0200 Source: epcr Binary: ncbi-epcr Architecture: sparc Version: 2.3.9-1 Distribution: intrepid Urgency: low Maintainer: Ubuntu/sparc Build Daemon Changed-By: Andreas Tille Description: ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s Closes: 241710 385256 436815 Changes: epcr (2.3.9-1) unstable; urgency=low . * New upstream version Closes: #385256 Upstream correctly handles strip option so this also Closes: #436815 * There are no reasonable files targetting at a ncbi-epcr-data package and thus this is dropped Closes: #241710 because the issue of this bug becomes void * Group maintenance by Debian-Med team - DM-Upload-Allowed: Yes - Vcs tags - Use correct address as Uploader: Steffen Moeller * Removed [Biology] from short description * Moved Homepage from long description to control fields and fixed Homepage * Standards-Version: 3.7.3 (no changes needed) * debhelper >= 5 * Patches using quilt * Use cdbs * Updated long description according to text on web Homepage * Just use (and fix) the docbook-to-man output rather than live with the broken output * Wrote man pages for re-PCR and fahash * Files: 2537566ad1e2bc2fc5230472ea885f97 200682 science extra ncbi-epcr_2.3.9-1_sparc.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/epcr-2.3.9 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-578777-1518947/chroot-autobuild --purge intltool-debian groff-base m4 gettext file libhtml-parser-perl intltool automake1.7 cdbs libwww-perl liburi-perl html2text diffstat gettext-base debhelper libhtml-tree-perl ifupdown autotools-dev po-debconf net-tools quilt libxml-parser-perl libmagic1 libhtml-tagset-perl libexpat1 netbase bsdmainutils fdupes update-inetd man-db autoconf (Reading database ... 12475 files and directories currently installed.) Removing cdbs ... Removing debhelper ... Removing po-debconf ... Removing quilt ... Purging configuration files for quilt ... Removing fdupes ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing groff-base ... Purging configuration files for groff-base ... Removing intltool ... Removing automake1.7 ... Removing html2text ... Purging configuration files for html2text ... Removing diffstat ... Removing autotools-dev ... Removing libxml-parser-perl ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing gettext ... Removing file ... Purging configuration files for file ... Removing libwww-perl ... Removing gettext-base ... Removing libhtml-tree-perl ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing netbase ... Purging configuration files for netbase ... Removing update-inetd ... Purging configuration files for update-inetd ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing ifupdown ... Purging configuration files for ifupdown ... Removing net-tools ... Removing libhtml-tagset-perl ... ****************************************************************************** Finished at 20080518-2132 Build needed 00:01:18, 11128k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '578777-1518947'] Scanning for processes to kill in build 578777-1518947... Scanning for processes to kill in build /home/buildd/build-578777-1518947/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '578777-1518947'] Unmounting chroot for build 578777-1518947... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '578777-1518947'] Removing build 578777-1518947