https://launchpad.net/ubuntu/+source/examl/3.0.22-1/+build/19392531 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-028 4.4.0-179-generic #209-Ubuntu SMP Fri Apr 24 17:48:44 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.9 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 1 Jun 23:11:38 ntpdate[1914]: adjust time server 10.211.37.1 offset 0.056556 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19392531 --image-type chroot /home/buildd/filecache-default/7f6882774d93a6ce12d34cd2f4e4b83a707bcc6e Creating target for build PACKAGEBUILD-19392531 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19392531 Starting target for build PACKAGEBUILD-19392531 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19392531 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19392531 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19392531 Updating target for build PACKAGEBUILD-19392531 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 Packages [971 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [507 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe amd64 Packages [8731 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5180 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 Packages [52.0 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [27.7 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 Packages [502 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [302 kB] Fetched 16.8 MB in 3s (5570 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 ca-certificates cpp-9 dash debconf debianutils e2fsprogs fdisk g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip libacl1 libapparmor1 libapt-pkg6.0 libasan5 libatomic1 libbinutils libblkid1 libbz2-1.0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libitm1 libkmod2 liblsan0 libmount1 libncurses6 libncursesw6 libperl5.30 libprocps8 libquadmath0 libseccomp2 libsmartcols1 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 linux-libc-dev login logsave make mount ncurses-base ncurses-bin passwd perl perl-base perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata util-linux 86 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 56.6 MB of archives. After this operation, 529 kB of additional disk space will be used. 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http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libbz2-1.0 amd64 1.0.8-3 [32.3 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main amd64 debconf all 1.5.74 [121 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main amd64 dash amd64 0.5.10.2-7 [86.3 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 gzip amd64 1.10-2ubuntu1 [95.0 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 login amd64 1:4.8.1-1ubuntu6 [221 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-bin amd64 6.2-1 [172 kB] Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libblkid1 amd64 2.35.1-5ubuntu2 [133 kB] Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libuuid1 amd64 2.35.1-5ubuntu2 [22.2 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libfdisk1 amd64 2.35.1-5ubuntu2 [171 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libmount1 amd64 2.35.1-5ubuntu2 [145 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main amd64 libncurses6 amd64 6.2-1 [101 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main amd64 libncursesw6 amd64 6.2-1 [132 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main amd64 libtinfo6 amd64 6.2-1 [87.1 kB] Get:24 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libsmartcols1 amd64 2.35.1-5ubuntu2 [95.7 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 fdisk amd64 2.35.1-5ubuntu2 [123 kB] Get:26 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 util-linux amd64 2.35.1-5ubuntu2 [1050 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-base all 6.2-1 [18.7 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main amd64 sysvinit-utils amd64 2.96-3ubuntu1 [20.6 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main amd64 libatomic1 amd64 10.1.0-3ubuntu1 [9280 B] Get:30 http://ftpmaster.internal/ubuntu groovy/main amd64 libubsan1 amd64 10.1.0-3ubuntu1 [136 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main amd64 libtsan0 amd64 10.1.0-3ubuntu1 [320 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main amd64 libquadmath0 amd64 10.1.0-3ubuntu1 [146 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main amd64 liblsan0 amd64 10.1.0-3ubuntu1 [144 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main amd64 libitm1 amd64 10.1.0-3ubuntu1 [26.3 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main amd64 libgomp1 amd64 10.1.0-3ubuntu1 [101 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-10-base amd64 10.1.0-3ubuntu1 [20.0 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main amd64 libgcc-s1 amd64 10.1.0-3ubuntu1 [41.5 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main amd64 libcc1-0 amd64 10.1.0-3ubuntu1 [41.2 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main amd64 libstdc++6 amd64 10.1.0-3ubuntu1 [502 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main amd64 systemd-sysv amd64 245.5-3ubuntu1 [10.3 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main amd64 systemd-timesyncd amd64 245.5-3ubuntu1 [27.9 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main amd64 libacl1 amd64 2.2.53-8 [18.9 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main amd64 libapparmor1 amd64 2.13.3-7ubuntu6 [34.3 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main amd64 libcap2 amd64 1:2.34-2 [17.9 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main amd64 libudev1 amd64 245.5-3ubuntu1 [74.6 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu3 [127 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main amd64 libcryptsetup12 amd64 2:2.3.1-1ubuntu1 [192 kB] Get:48 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libunistring2 amd64 0.9.10-3 [369 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main amd64 libidn2-0 amd64 2.3.0-1 [52.6 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main amd64 libkmod2 amd64 27+20200310-2ubuntu1 [44.1 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Get:61 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 passwd amd64 1:4.8.1-1ubuntu6 [797 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main amd64 libcom-err2 amd64 1.45.6-1ubuntu1 [9664 B] Get:63 http://ftpmaster.internal/ubuntu groovy/main amd64 libprocps8 amd64 2:3.3.16-4ubuntu1 [32.9 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main amd64 libss2 amd64 1.45.6-1ubuntu1 [11.3 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main amd64 procps amd64 2:3.3.16-4ubuntu1 [232 kB] Get:66 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 ca-certificates all 20190110ubuntu2 [145 kB] Get:67 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libsqlite3-0 amd64 3.32.1-2 [550 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main amd64 tzdata all 2020a-0ubuntu1 [293 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main amd64 libctf0 amd64 2.34-7ubuntu1 [46.6 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main amd64 binutils-x86-64-linux-gnu amd64 2.34-7ubuntu1 [1613 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main amd64 libbinutils amd64 2.34-7ubuntu1 [474 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main amd64 binutils amd64 2.34-7ubuntu1 [3376 B] Get:73 http://ftpmaster.internal/ubuntu groovy/main amd64 binutils-common amd64 2.34-7ubuntu1 [207 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main amd64 libctf-nobfd0 amd64 2.34-7ubuntu1 [47.2 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main amd64 libasan5 amd64 9.3.0-13ubuntu1 [395 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main amd64 g++-9 amd64 9.3.0-13ubuntu1 [8403 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-9 amd64 9.3.0-13ubuntu1 [8239 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main amd64 libstdc++-9-dev amd64 9.3.0-13ubuntu1 [1714 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main amd64 libgcc-9-dev amd64 9.3.0-13ubuntu1 [2360 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main amd64 cpp-9 amd64 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19392531 amd64 groovy-proposed -c chroot:build-PACKAGEBUILD-19392531 --arch=amd64 --dist=groovy-proposed --nolog -A examl_3.0.22-1.dsc Initiating build PACKAGEBUILD-19392531 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-179-generic #209-Ubuntu SMP Fri Apr 24 17:48:44 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-028.buildd +==============================================================================+ | examl 3.0.22-1 (amd64) 01 Jun 2020 23:12 | +==============================================================================+ Package: examl Version: 3.0.22-1 Source Version: 3.0.22-1 Distribution: groovy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/examl-hVC9Ku/examl-3.0.22' with '<>' I: NOTICE: Log filtering will replace 'build/examl-hVC9Ku' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19392531/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- examl_3.0.22-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-jp6gQY/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-jp6gQY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-jp6gQY/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-jp6gQY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-jp6gQY/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-jp6gQY/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (159 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. 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The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcbor0.6 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu66 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libsigsegv2 libsimde-dev libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libcoarrays-openmpi-dev xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcbor0.6 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu66 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libsigsegv2 libsimde-dev libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-examl-dummy zlib1g-dev 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 35.8 MB of archives. After this operation, 148 MB of additional disk space will be used. Get:1 copy:/<>/resolver-SzerIE/apt_archive ./ sbuild-build-depends-examl-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main amd64 bsdmainutils amd64 11.1.2ubuntu3 [181 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 groff-base amd64 1.22.4-5 [847 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main amd64 libpipeline1 amd64 1.5.2-2build1 [27.7 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main amd64 man-db amd64 2.9.1-1 [1112 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main amd64 libmagic-mgc amd64 1:5.38-5 [218 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main amd64 libmagic1 amd64 1:5.38-5 [76.0 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main amd64 file amd64 1:5.38-5 [23.3 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main amd64 libelf1 amd64 0.176-1.1build1 [44.0 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libglib2.0-0 amd64 2.64.3-1 [1285 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main amd64 libicu66 amd64 66.1-2ubuntu2 [8520 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main amd64 libxml2 amd64 2.9.10+dfsg-5 [640 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main amd64 gettext-base amd64 0.19.8.1-10build1 [50.2 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main amd64 libcbor0.6 amd64 0.6.0-0ubuntu1 [21.1 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main amd64 libedit2 amd64 3.1-20191231-1 [87.0 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main amd64 libfido2-1 amd64 1.4.0-2 [49.9 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main amd64 libkrb5support0 amd64 1.17-6ubuntu4 [30.9 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main amd64 libk5crypto3 amd64 1.17-6ubuntu4 [80.2 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main amd64 libkeyutils1 amd64 1.6.1-2ubuntu1 [10.1 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main amd64 libkrb5-3 amd64 1.17-6ubuntu4 [330 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main amd64 libgssapi-krb5-2 amd64 1.17-6ubuntu4 [121 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main amd64 libnuma1 amd64 2.0.12-1 [20.8 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main amd64 libxau6 amd64 1:1.0.9-0ubuntu1 [7488 B] Get:26 http://ftpmaster.internal/ubuntu groovy/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu1 [10.6 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main amd64 libxcb1 amd64 1.14-2 [44.7 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main amd64 libx11-data all 2:1.6.9-2ubuntu1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main amd64 libx11-6 amd64 2:1.6.9-2ubuntu1 [573 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main amd64 libxext6 amd64 2:1.3.4-0ubuntu1 [29.1 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main amd64 openssh-client amd64 1:8.2p1-4 [674 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main amd64 m4 amd64 1.4.18-4 [199 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main amd64 autoconf all 2.69-11.1 [321 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main amd64 automake all 1:1.16.2-1ubuntu1 [521 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main amd64 autopoint all 0.19.8.1-10build1 [412 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main amd64 libtool all 2.4.6-14 [161 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main amd64 dh-autoreconf all 19 [16.1 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main amd64 libdebhelper-perl all 13.1ubuntu1 [64.0 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:43 http://ftpmaster.internal/ubuntu groovy/main amd64 libfile-stripnondeterminism-perl all 1.8.1-1 [17.1 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main amd64 dh-strip-nondeterminism all 1.8.1-1 [5232 B] Get:45 http://ftpmaster.internal/ubuntu groovy/main amd64 dwz amd64 0.13-5 [151 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main amd64 po-debconf all 1.0.21 [233 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main amd64 debhelper all 13.1ubuntu1 [885 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main amd64 libgfortran5 amd64 10.1.0-3ubuntu1 [734 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main amd64 libgfortran-9-dev amd64 9.3.0-13ubuntu1 [684 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main amd64 gfortran-9 amd64 9.3.0-13ubuntu1 [7915 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main amd64 libnl-3-200 amd64 3.4.0-1 [53.9 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main amd64 libibverbs1 amd64 29.0-1build1 [53.7 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main amd64 ibverbs-providers amd64 29.0-1build1 [235 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main amd64 libevent-2.1-7 amd64 2.1.11-stable-1 [138 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main amd64 libevent-core-2.1-7 amd64 2.1.11-stable-1 [89.1 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main amd64 libevent-extra-2.1-7 amd64 2.1.11-stable-1 [60.0 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main amd64 libevent-pthreads-2.1-7 amd64 2.1.11-stable-1 [7372 B] Get:62 http://ftpmaster.internal/ubuntu groovy/main amd64 libevent-openssl-2.1-7 amd64 2.1.11-stable-1 [14.3 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main amd64 libevent-dev amd64 2.1.11-stable-1 [261 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/universe amd64 libpsm2-2 amd64 11.2.86-1 [178 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main amd64 librdmacm1 amd64 29.0-1build1 [64.7 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/universe amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/universe amd64 libhwloc15 amd64 2.2.0+dfsg-3 [135 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main amd64 libltdl7 amd64 2.4.6-14 [38.5 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main amd64 libltdl-dev amd64 2.4.6-14 [162 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main amd64 libnl-3-dev amd64 3.4.0-1 [92.2 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main amd64 libnl-route-3-dev amd64 3.4.0-1 [166 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main amd64 libpciaccess0 amd64 0.16-0ubuntu1 [17.9 kB] Get:74 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libxnvctrl0 amd64 440.82-0ubuntu1 [11.0 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/universe amd64 libhwloc-plugins amd64 2.2.0+dfsg-3 [14.5 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/universe amd64 libpmix2 amd64 3.1.5-1 [442 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/universe amd64 libopenmpi3 amd64 4.0.3-6ubuntu2 [1982 kB] Get:79 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 libsimde-dev all 0.0.0.git.20200526-1 [109 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/universe amd64 openmpi-common all 4.0.3-6ubuntu2 [151 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/universe amd64 openmpi-bin amd64 4.0.3-6ubuntu2 [67.4 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu1 [156 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main amd64 libnuma-dev amd64 2.0.12-1 [32.4 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/universe amd64 libhwloc-dev amd64 2.2.0+dfsg-3 [206 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main amd64 libibverbs-dev amd64 29.0-1build1 [447 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/universe amd64 libopenmpi-dev amd64 4.0.3-6ubuntu2 [813 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.8 MB in 7s (5412 kB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12823 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... 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Unpacking sbuild-build-depends-examl-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.2-2build1) ... Setting up libsimde-dev (0.0.0.git.20200526-1) ... Setting up libpciaccess0:amd64 (0.16-0ubuntu1) ... Setting up libxau6:amd64 (1:1.0.9-0ubuntu1) ... Setting up libkeyutils1:amd64 (1.6.1-2ubuntu1) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.3-1) ... No schema files found: doing nothing. Setting up libicu66:amd64 (66.1-2ubuntu2) ... Setting up libdebhelper-perl (13.1ubuntu1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up libcbor0.6:amd64 (0.6.0-0ubuntu1) ... Setting up libkrb5support0:amd64 (1.17-6ubuntu4) ... Setting up autotools-dev (20180224.1) ... Setting up libx11-data (2:1.6.9-2ubuntu1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libhwloc15:amd64 (2.2.0+dfsg-3) ... Setting up libevent-core-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libevent-2.1-7:amd64 (2.1.11-stable-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libk5crypto3:amd64 (1.17-6ubuntu4) ... Setting up libltdl7:amd64 (2.4.6-14) ... Setting up libgfortran5:amd64 (10.1.0-3ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu1) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libpsm2-2 (11.2.86-1) ... Setting up openmpi-common (4.0.3-6ubuntu2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:amd64 (1.17-6ubuntu4) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.4.0-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1build1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu1) ... Setting up libevent-extra-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libxcb1:amd64 (1.14-2) ... Setting up libtool (2.4.6-14) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libgfortran-9-dev:amd64 (9.3.0-13ubuntu1) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.11-stable-1) ... Setting up m4 (1.4.18-4) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libevent-dev (2.1.11-stable-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-6ubuntu4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up dwz (0.13-5) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up groff-base (1.22.4-5) ... Setting up libx11-6:amd64 (2:1.6.9-2ubuntu1) ... Setting up automake (1:1.16.2-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:amd64 (29.0-1build1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up gfortran-9 (9.3.0-13ubuntu1) ... Setting up ibverbs-providers:amd64 (29.0-1build1) ... Setting up openssh-client (1:8.2p1-4) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxnvctrl0:amd64 (440.82-0ubuntu1) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up libltdl-dev:amd64 (2.4.6-14) ... Setting up libhwloc-dev:amd64 (2.2.0+dfsg-3) ... Setting up librdmacm1:amd64 (29.0-1build1) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:amd64 (29.0-1build1) ... Setting up libhwloc-plugins:amd64 (2.2.0+dfsg-3) ... Setting up libfabric1 (1.6.2-3) ... Setting up libpmix2:amd64 (3.1.5-1) ... Setting up libopenmpi3:amd64 (4.0.3-6ubuntu2) ... Setting up openmpi-bin (4.0.3-6ubuntu2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.0.3-6ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up debhelper (13.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-examl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-179-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-7ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-13ubuntu1 gcc-9_9.3.0-13ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-13ubuntu1 libstdc++6_10.1.0-3ubuntu1 linux-libc-dev_5.4.0-33.37 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.5 autoconf_2.69-11.1 automake_1:1.16.2-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-7ubuntu1 binutils-common_2.34-7ubuntu1 binutils-x86-64-linux-gnu_2.34-7ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.35.1-5ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.8-3 ca-certificates_20190110ubuntu2 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-13ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1ubuntu1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.35.1-5ubuntu2 file_1:5.38-5 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-13ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10.1.0-3ubuntu1 gcc-9_9.3.0-13ubuntu1 gcc-9-base_9.3.0-13ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gfortran-9_9.3.0-13ubuntu1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 ibverbs-providers_29.0-1build1 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_2.13.3-7ubuntu6 libapt-pkg6.0_2.1.5 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-13ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10.1.0-3ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-7ubuntu1 libblkid1_2.35.1-5ubuntu2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-3 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.34-2 libcbor0.6_0.6.0-0ubuntu1 libcc1-0_10.1.0-3ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1ubuntu1 libcrypt1_1:4.4.15-1ubuntu1 libcryptsetup12_2:2.3.1-1ubuntu1 libctf-nobfd0_2.34-7ubuntu1 libctf0_2.34-7ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.19.7ubuntu3 libedit2_3.1-20191231-1 libelf1_0.176-1.1build1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libext2fs2_1.45.6-1ubuntu1 libfabric1_1.6.2-3 libfakeroot_1.24-1 libfdisk1_2.35.1-5ubuntu2 libffi7_3.3-4 libfido2-1_1.4.0-2 libfile-stripnondeterminism-perl_1.8.1-1 libgcc-9-dev_9.3.0-13ubuntu1 libgcc-s1_10.1.0-3ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.3.0-13ubuntu1 libgfortran5_10.1.0-3ubuntu1 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10.1.0-3ubuntu1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6ubuntu4 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_2.2.0+dfsg-3 libhwloc-plugins_2.2.0+dfsg-3 libhwloc15_2.2.0+dfsg-3 libibverbs-dev_29.0-1build1 libibverbs1_29.0-1build1 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libitm1_10.1.0-3ubuntu1 libjson-c4_0.13.1+dfsg-7 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.1.0-3ubuntu1 libltdl-dev_2.4.6-14 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-5ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-1 libnuma-dev_2.0.12-1 libnuma1_2.0.12-1 libopenmpi-dev_4.0.3-6ubuntu2 libopenmpi3_4.0.3-6ubuntu2 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpciaccess0_0.16-0ubuntu1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.2-1 libpipeline1_1.5.2-2build1 libpmix2_3.1.5-1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-4ubuntu1 libpsm-infinipath1_3.3+20.604758e7-6 libpsm2-2_11.2.86-1 libquadmath0_10.1.0-3ubuntu1 librdmacm1_29.0-1build1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu3 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsimde-dev_0.0.0.git.20200526-1 libsmartcols1_2.35.1-5ubuntu2 libsqlite3-0_3.32.1-2 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-13ubuntu1 libstdc++6_10.1.0-3ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.5-3ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-3ubuntu1 libubsan1_10.1.0-3ubuntu1 libuchardet0_0.0.7-1 libudev1_245.5-3ubuntu1 libunistring2_0.9.10-3 libuuid1_2.35.1-5ubuntu2 libx11-6_2:1.6.9-2ubuntu1 libx11-data_2:1.6.9-2ubuntu1 libxau6_1:1.0.9-0ubuntu1 libxcb1_1.14-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxml2_2.9.10+dfsg-5 libxnvctrl0_440.82-0ubuntu1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-33.37 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-1 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.35.1-5ubuntu2 ncurses-base_6.2-1 ncurses-bin_6.2-1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_4.0.3-6ubuntu2 openmpi-common_4.0.3-6ubuntu2 openssh-client_1:8.2p1-4 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.2-1 perl-base_5.30.2-1 perl-modules-5.30_5.30.2-1 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-4ubuntu1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-examl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.5-3ubuntu1 systemd-sysv_245.5-3ubuntu1 systemd-timesyncd_245.5-3ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.35.1-5ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jun 1 14:10:18 2020 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./examl_3.0.22-1.dsc dpkg-source: info: extracting examl in examl-3.0.22 dpkg-source: info: unpacking examl_3.0.22.orig.tar.gz dpkg-source: info: unpacking examl_3.0.22-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying simde Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19392531 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19392531 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19392531 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package examl dpkg-buildpackage: info: source version 3.0.22-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=examl debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_clean -- SFX=-${SIMD} ; \ done /usr/bin/make --directory=parser -f Makefile.SSE3.gcc clean make[2]: Entering directory '/<>/parser' rm -f *.o parse-examl"" make[2]: Leaving directory '/<>/parser' make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=examl dh_clean -O--sourcedirectory=examl debian/rules binary dh binary --sourcedirectory=examl dh_update_autotools_config -O--sourcedirectory=examl dh_autoreconf -O--sourcedirectory=examl dh_auto_configure -O--sourcedirectory=examl debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ /usr/bin/make --directory=examl -f Makefile.AVX.gcc SFX=-${SIMD} CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \ /usr/bin/make --directory=examl -f Makefile.OMP.AVX.gcc SFX=-${SIMD} CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \ find . -name '*.o' -delete ; \ done make[2]: Entering directory '/<>/examl' rm -f *.o examl-avx2 mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: axml.c: In function ‘main’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:461, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/9/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:126:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 126 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-avx2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' mpicc -o examl-OMP-avx2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' rm -f *.o examl-avx mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: axml.c: In function ‘main’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:461, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/9/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:126:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 126 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-avx axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' mpicc -o examl-OMP-avx axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' rm -f *.o examl-sse4.1 mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: axml.c: In function ‘main’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ In file included from /usr/include/simde/x86/avx2.h:33, from avxLikelihood.c:14: /usr/include/simde/x86/avx.h: In function ‘simde__m256d_from_private’: /usr/include/simde/x86/avx.h:284:1: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 284 | simde__m256d_from_private(simde__m256d_private v) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:461, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/9/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:126:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 126 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-sse4.1 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' mpicc -o examl-OMP-sse4.1 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' rm -f *.o examl-ssse3 mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: axml.c: In function ‘main’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ In file included from /usr/include/simde/x86/avx2.h:33, from avxLikelihood.c:14: /usr/include/simde/x86/avx.h: In function ‘simde__m256d_from_private’: /usr/include/simde/x86/avx.h:284:1: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 284 | simde__m256d_from_private(simde__m256d_private v) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:461, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/9/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:126:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 126 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-ssse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' mpicc -o examl-OMP-ssse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' rm -f *.o examl-sse3 mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: axml.c: In function ‘main’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ In file included from /usr/include/simde/x86/avx2.h:33, from avxLikelihood.c:14: /usr/include/simde/x86/avx.h: In function ‘simde__m256d_from_private’: /usr/include/simde/x86/avx.h:284:1: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 284 | simde__m256d_from_private(simde__m256d_private v) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:461, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/9/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:126:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 126 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-sse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' mpicc -o examl-OMP-sse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' rm -f *.o examl-sse2 mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: axml.c: In function ‘main’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ In file included from /usr/include/simde/x86/avx2.h:33, from avxLikelihood.c:14: /usr/include/simde/x86/avx.h: In function ‘simde__m256d_from_private’: /usr/include/simde/x86/avx.h:284:1: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 284 | simde__m256d_from_private(simde__m256d_private v) { | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c quartets.c: In function ‘computeQuartets’: quartets.c:393:31: warning: implicit declaration of function ‘basename’; did you mean ‘rename’? [-Wimplicit-function-declaration] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~ | rename quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from integer without a cast [-Wint-conversion] 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int In file included from /usr/include/features.h:461, from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/9/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/9/include/limits.h:34, from quartets.c:36: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:126:1: note: expected ‘const char * restrict’ but argument is of type ‘int’ 126 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) | ^~~~~ mpicc -o examl-sse2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' make[2]: Entering directory '/<>/examl' mpicc -o examl-OMP-sse2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/examl' /usr/bin/make --directory=parser -f Makefile.SSE3.gcc make[2]: Entering directory '/<>/parser' rm -f *.o parse-examl"" gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c axml.c: In function ‘genericBaseFrequencies’: axml.c:2509:19: warning: comparison is always true due to limited range of data type [-Wtype-limits] 2509 | if(yptr[j] >= 0 && yptr[j] < 20) | ^~ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c gcc -o parse-examl"" axml.o parsePartitions.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/parser' make[1]: Leaving directory '/<>' dh_auto_test -O--sourcedirectory=examl create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=examl dh_prep -O--sourcedirectory=examl debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_install debian/bin/simd-dispatch /usr/lib/examl/bin dh_install examl/examl* /usr/lib/examl/bin/ dh_install parser/parse-examl /usr/bin/ mkdir -p /<>/debian/examl/usr/bin cd /<>/debian/examl/usr/bin \ && for prog in examl examl-OMP ; do \ ln -s ../lib/examl/bin/simd-dispatch ${prog} ; done make[1]: Leaving directory '/<>' dh_installdocs -O--sourcedirectory=examl dh_installchangelogs -O--sourcedirectory=examl dh_installman -O--sourcedirectory=examl dh_installinit -O--sourcedirectory=examl dh_installsystemduser -O--sourcedirectory=examl dh_perl -O--sourcedirectory=examl dh_link -O--sourcedirectory=examl dh_strip_nondeterminism -O--sourcedirectory=examl dh_compress -O--sourcedirectory=examl dh_fixperms -O--sourcedirectory=examl dh_missing -O--sourcedirectory=examl dh_dwz -O--sourcedirectory=examl dh_strip -O--sourcedirectory=examl dh_makeshlibs -O--sourcedirectory=examl dh_shlibdeps -O--sourcedirectory=examl dh_installdeb -O--sourcedirectory=examl debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.0.0.git.20200526-1), " make[1]: Leaving directory '/<>' dh_md5sums -O--sourcedirectory=examl dh_builddeb -O--sourcedirectory=examl INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing examl (in debian/examl); do_strip: , oemstrip: pkgstriptranslations: processing examl-dbgsym (in debian/.debhelper/examl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/examl/DEBIAN/control, package examl, directory debian/examl pkgstripfiles: processing control file: debian/.debhelper/examl/dbgsym-root/DEBIAN/control, package examl-dbgsym, directory debian/.debhelper/examl/dbgsym-root dpkg-deb: building package 'examl-dbgsym' in 'debian/.debhelper/scratch-space/build-examl/examl-dbgsym_3.0.22-1_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package examl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'examl' in '../examl_3.0.22-1_amd64.deb'. Renaming examl-dbgsym_3.0.22-1_amd64.deb to examl-dbgsym_3.0.22-1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../examl_3.0.22-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200601-2316 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ examl_3.0.22-1_amd64.changes: ----------------------------- Format: 1.8 Date: Mon, 01 Jun 2020 16:09:49 +0200 Source: examl Binary: examl Architecture: amd64 Version: 3.0.22-1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: examl - Exascale Maximum Likelihood (ExaML) code for phylogenetic inferen Changes: examl (3.0.22-1) unstable; urgency=medium . * Team upload. * New upstream release. * For GPL compliance, document libsimde-dev usage and version number via Built-Using * Refresh hardening patch, almost all of it was applied upstream. Checksums-Sha1: da1d88305b517f6f1f6b1a10fabd4850b8bd3705 2663492 examl-dbgsym_3.0.22-1_amd64.ddeb 49df3fda9fd3d52796cb84285a282055c59bedc8 6980 examl_3.0.22-1_amd64.buildinfo 57898389f16d6203c2375d16aa4059288a5e6b49 951332 examl_3.0.22-1_amd64.deb Checksums-Sha256: 1f54d7951b870247c1a899f74cfc4e650776642e863721d2d02db396636f206a 2663492 examl-dbgsym_3.0.22-1_amd64.ddeb 9de350f5e0b0d89ac1cd1ec8bee74b20524064e68861a95abe00869c8849ad07 6980 examl_3.0.22-1_amd64.buildinfo 43562fa1a7794421e5b357c064f41e14b18ea1dfce9dd9dca4b263053aa4f47e 951332 examl_3.0.22-1_amd64.deb Files: 6b2072a315702f08c1464fda782d96d3 2663492 debug optional examl-dbgsym_3.0.22-1_amd64.ddeb 0364f24593d5887c522eeffef43ed273 6980 science optional examl_3.0.22-1_amd64.buildinfo 49d9476b998dd734826c1a19f5c7228a 951332 science optional examl_3.0.22-1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ examl_3.0.22-1_amd64.deb ------------------------ new debian package, version 2.0. size 951332 bytes: control archive=2008 bytes. 1481 bytes, 30 lines control 2341 bytes, 34 lines md5sums Package: examl Version: 3.0.22-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6293 Depends: libc6 (>= 2.29), libopenmpi3 (>= 4.0.3), openmpi-bin Built-Using: simde (= 0.0.0.git.20200526-1) Section: science Priority: optional Homepage: https://github.com/stamatak/ExaML Description: Exascale Maximum Likelihood (ExaML) code for phylogenetic inference Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees. . ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data. . ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency. . It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors. drwxr-xr-x root/root 0 2020-06-01 14:09 ./ drwxr-xr-x root/root 0 2020-06-01 14:09 ./usr/ drwxr-xr-x root/root 0 2020-06-01 14:09 ./usr/bin/ lrwxrwxrwx root/root 0 2020-06-01 14:09 ./usr/bin/examl -> ../lib/examl/bin/simd-dispatch lrwxrwxrwx root/root 0 2020-06-01 14:09 ./usr/bin/examl-OMP -> ../lib/examl/bin/simd-dispatch -rwxr-xr-x root/root 85304 2020-06-01 14:09 ./usr/bin/parse-examl drwxr-xr-x root/root 0 2020-06-01 14:09 ./usr/lib/ drwxr-xr-x root/root 0 2020-06-01 14:09 ./usr/lib/examl/ drwxr-xr-x root/root 0 2020-06-01 14:09 ./usr/lib/examl/bin/ -rwxr-xr-x root/root 417192 2020-06-01 14:09 ./usr/lib/examl/bin/examl-OMP-avx -rwxr-xr-x root/root 421288 2020-06-01 14:09 ./usr/lib/examl/bin/examl-OMP-avx2 -rwxr-xr-x root/root 503208 2020-06-01 14:09 ./usr/lib/examl/bin/examl-OMP-sse2 -rwxr-xr-x root/root 503208 2020-06-01 14:09 ./usr/lib/examl/bin/examl-OMP-sse3 -rwxr-xr-x 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 56024 Build-Time: 231 Distribution: groovy-proposed Host Architecture: amd64 Install-Time: 22 Job: examl_3.0.22-1.dsc Machine Architecture: amd64 Package: examl Package-Time: 254 Source-Version: 3.0.22-1 Space: 56024 Status: successful Version: 3.0.22-1 -------------------------------------------------------------------------------- Finished at 20200601-2316 Build needed 00:04:14, 56024k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19392531 Scanning for processes to kill in build PACKAGEBUILD-19392531