RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-004 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:31:48 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_152 python-lpbuildd_152 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 18 Oct 07:23:33 ntpdate[2252]: adjust time server 10.211.37.1 offset 0.004305 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=artful --arch=armhf PACKAGEBUILD-13590421 /home/buildd/filecache-default/b70461af4419c13dbae7acd6fe74d075a1a9550f Creating target for build PACKAGEBUILD-13590421 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=artful --arch=armhf PACKAGEBUILD-13590421 Starting target for build PACKAGEBUILD-13590421 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=artful --arch=armhf PACKAGEBUILD-13590421 'deb http://ftpmaster.internal/ubuntu artful main universe' 'deb http://ftpmaster.internal/ubuntu artful-security main universe' 'deb http://ftpmaster.internal/ubuntu artful-updates main universe' 'deb http://ftpmaster.internal/ubuntu artful-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13590421 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=artful --arch=armhf PACKAGEBUILD-13590421 Updating target for build PACKAGEBUILD-13590421 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main armhf Packages [1032 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [542 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe armhf Packages [7870 kB] Get:8 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4789 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main armhf Packages [28.0 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [11.8 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe armhf Packages [33.4 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [22.8 kB] Fetched 14.9 MB in 6s (2216 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'sudo apt autoremove' to remove it. The following packages will be upgraded: apt apt-transport-https base-files binutils binutils-arm-linux-gnueabihf binutils-common build-essential coreutils cpp-7 g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcilkrts5 libcurl3-gnutls libgcc-7-dev libgcc1 libgomp1 libhogweed4 libnettle6 libpcre3 libpng16-16 libseccomp2 libsemanage-common libsemanage1 libstdc++-7-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev multiarch-support systemd systemd-sysv 46 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 36.6 MB of archives. After this operation, 2121 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu artful/main armhf base-files armhf 9.6ubuntu102 [59.0 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main armhf coreutils armhf 8.26-3ubuntu4 [1111 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main armhf libc6-dev armhf 2.26-0ubuntu2 [1900 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main armhf libc-dev-bin armhf 2.26-0ubuntu2 [60.1 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main armhf linux-libc-dev armhf 4.13.0-16.19 [934 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main armhf libgomp1 armhf 7.2.0-8ubuntu3 [65.7 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main armhf gcc-7-base armhf 7.2.0-8ubuntu3 [18.0 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main armhf libgcc1 armhf 1:7.2.0-8ubuntu3 [38.8 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main armhf libatomic1 armhf 7.2.0-8ubuntu3 [6272 B] Get:10 http://ftpmaster.internal/ubuntu artful/main armhf libasan4 armhf 7.2.0-8ubuntu3 [329 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main armhf libubsan0 armhf 7.2.0-8ubuntu3 [109 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main armhf libcilkrts5 armhf 7.2.0-8ubuntu3 [36.1 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main armhf cpp-7 armhf 7.2.0-8ubuntu3 [5289 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main armhf libcc1-0 armhf 7.2.0-8ubuntu3 [32.3 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main armhf g++-7 armhf 7.2.0-8ubuntu3 [6032 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main armhf gcc-7 armhf 7.2.0-8ubuntu3 [5914 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main armhf libgcc-7-dev armhf 7.2.0-8ubuntu3 [705 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main armhf libstdc++-7-dev armhf 7.2.0-8ubuntu3 [1530 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main armhf libstdc++6 armhf 7.2.0-8ubuntu3 [358 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main armhf libbinutils armhf 2.29.1-4ubuntu1 [306 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main armhf binutils armhf 2.29.1-4ubuntu1 [3296 B] Get:22 http://ftpmaster.internal/ubuntu artful/main armhf binutils-common armhf 2.29.1-4ubuntu1 [190 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main armhf binutils-arm-linux-gnueabihf armhf 2.29.1-4ubuntu1 [2189 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main armhf libc6 armhf 2.26-0ubuntu2 [2212 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main armhf libc-bin armhf 2.26-0ubuntu2 [477 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main armhf libudev1 armhf 234-2ubuntu12 [46.6 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main armhf libapt-pkg5.0 armhf 1.5 [712 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main armhf gpgv armhf 2.1.15-1ubuntu8 [157 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main armhf apt armhf 1.5 [1080 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main armhf libcap2 armhf 1:2.25-1.1 [11.9 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main armhf libseccomp2 armhf 2.3.1-2.1ubuntu3 [29.9 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main armhf systemd armhf 234-2ubuntu12 [2624 kB] Get:33 http://ftpmaster.internal/ubuntu artful/main armhf libsystemd0 armhf 234-2ubuntu12 [190 kB] Get:34 http://ftpmaster.internal/ubuntu artful/main armhf systemd-sysv armhf 234-2ubuntu12 [10.8 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main armhf libpcre3 armhf 2:8.39-5ubuntu3 [209 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main armhf libsemanage-common all 2.7-2 [6916 B] Get:37 http://ftpmaster.internal/ubuntu artful/main armhf libsemanage1 armhf 2.7-2 [72.3 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main armhf libnettle6 armhf 3.3-2 [106 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main armhf libhogweed4 armhf 3.3-2 [126 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main armhf gnupg armhf 2.1.15-1ubuntu8 [711 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main armhf gnupg-agent armhf 2.1.15-1ubuntu8 [211 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main armhf multiarch-support armhf 2.26-0ubuntu2 [6832 B] Get:43 http://ftpmaster.internal/ubuntu artful/main armhf libpng16-16 armhf 1.6.34-1 [159 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main armhf libcurl3-gnutls armhf 7.55.1-1ubuntu2 [167 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main armhf apt-transport-https armhf 1.5 [30.5 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main armhf build-essential armhf 12.4ubuntu1 [4752 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.6 MB in 3s (10.3 MB/s) (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu102_armhf.deb ... Unpacking base-files (9.6ubuntu102) over (9.6ubuntu101) ... Setting up base-files (9.6ubuntu102) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_armhf.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.26-0ubuntu2_armhf.deb ... Unpacking libc6-dev:armhf (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../libc-dev-bin_2.26-0ubuntu2_armhf.deb ... Unpacking libc-dev-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.13.0-16.19_armhf.deb ... 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Unpacking libstdc++-7-dev:armhf (7.2.0-8ubuntu3) over (7.2.0-6ubuntu1) ... Preparing to unpack .../10-libstdc++6_7.2.0-8ubuntu3_armhf.deb ... Unpacking libstdc++6:armhf (7.2.0-8ubuntu3) over (7.2.0-6ubuntu1) ... Setting up libstdc++6:armhf (7.2.0-8ubuntu3) ... (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../libbinutils_2.29.1-4ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.29.1-4ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils_2.29.1-4ubuntu1_armhf.deb ... Unpacking binutils (2.29.1-4ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-common_2.29.1-4ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.29.1-4ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-arm-linux-gnueabihf_2.29.1-4ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.29.1-4ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../libc6_2.26-0ubuntu2_armhf.deb ... 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Setting up gpgv (2.1.15-1ubuntu8) ... (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../apt/archives/apt_1.5_armhf.deb ... Unpacking apt (1.5) over (1.5~rc4) ... Setting up apt (1.5) ... (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1.1_armhf.deb ... Unpacking libcap2:armhf (1:2.25-1.1) over (1:2.25-1) ... Preparing to unpack .../libseccomp2_2.3.1-2.1ubuntu3_armhf.deb ... Unpacking libseccomp2:armhf (2.3.1-2.1ubuntu3) over (2.3.1-2.1ubuntu2) ... Preparing to unpack .../systemd_234-2ubuntu12_armhf.deb ... Unpacking systemd (234-2ubuntu12) over (234-2ubuntu10) ... Preparing to unpack .../libsystemd0_234-2ubuntu12_armhf.deb ... Unpacking libsystemd0:armhf (234-2ubuntu12) over (234-2ubuntu10) ... Setting up libsystemd0:armhf (234-2ubuntu12) ... Setting up libcap2:armhf (1:2.25-1.1) ... Setting up libseccomp2:armhf (2.3.1-2.1ubuntu3) ... Setting up systemd (234-2ubuntu12) ... Removing empty /etc/rc.local addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removed /etc/systemd/system/network-online.target.wants/systemd-networkd-wait-online.service. (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../systemd-sysv_234-2ubuntu12_armhf.deb ... Unpacking systemd-sysv (234-2ubuntu12) over (234-2ubuntu10) ... Preparing to unpack .../libpcre3_2%3a8.39-5ubuntu3_armhf.deb ... Unpacking libpcre3:armhf (2:8.39-5ubuntu3) over (2:8.39-4) ... Setting up libpcre3:armhf (2:8.39-5ubuntu3) ... (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.7-2_all.deb ... Unpacking libsemanage-common (2.7-2) over (2.7-1) ... Setting up libsemanage-common (2.7-2) ... (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.7-2_armhf.deb ... Unpacking libsemanage1:armhf (2.7-2) over (2.7-1) ... 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Setting up linux-libc-dev:armhf (4.13.0-16.19) ... Setting up libgcc-7-dev:armhf (7.2.0-8ubuntu3) ... Setting up cpp-7 (7.2.0-8ubuntu3) ... Setting up binutils-common:armhf (2.29.1-4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up libc6-dev:armhf (2.26-0ubuntu2) ... Setting up apt-transport-https (1.5) ... Setting up libbinutils:armhf (2.29.1-4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up binutils-arm-linux-gnueabihf (2.29.1-4ubuntu1) ... Setting up libstdc++-7-dev:armhf (7.2.0-8ubuntu3) ... Setting up binutils (2.29.1-4ubuntu1) ... Setting up gcc-7 (7.2.0-8ubuntu3) ... Setting up g++-7 (7.2.0-8ubuntu3) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13590421 armhf artful-proposed -c chroot:build-PACKAGEBUILD-13590421 --arch=armhf --dist=artful-proposed --nolog fast5_0.6.3-1.dsc Initiating build PACKAGEBUILD-13590421 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:31:48 UTC 2017 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-004.buildd +==============================================================================+ | fast5 0.6.3-1 (armhf) 18 Oct 2017 07:24 | +==============================================================================+ Package: fast5 Version: 0.6.3-1 Source Version: 0.6.3-1 Distribution: artful-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/fast5-Ixw6Ka/fast5-0.6.3' with '<>' I: NOTICE: Log filtering will replace 'build/fast5-Ixw6Ka' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13590421/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fast5_0.6.3-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-aq7WaX/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-aq7WaX/apt_archive ./ InRelease Get:2 copy:/<>/resolver-aq7WaX/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-aq7WaX/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-aq7WaX/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-aq7WaX/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (90.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-aq7WaX/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3 Filtered Build-Depends: debhelper (>= 9), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3 dpkg-deb: building package 'sbuild-build-depends-fast5-dummy' in '/<>/resolver-n7a8JU/apt_archive/sbuild-build-depends-fast5-dummy.deb'. Ign:1 copy:/<>/resolver-n7a8JU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-n7a8JU/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-n7a8JU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-n7a8JU/apt_archive ./ Sources [259 B] Get:5 copy:/<>/resolver-n7a8JU/apt_archive ./ Packages [576 B] Fetched 2954 B in 0s (107 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install fast5 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost1.62-dev libbsd0 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu57 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsz2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-minimal python3-pkg-resources python3-setuptools python3.6 python3.6-dev python3.6-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.62-doc gccxml libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost1.62-dev libbsd0 libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu57 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsz2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-minimal python3-pkg-resources python3-setuptools python3.6 python3.6-dev python3.6-minimal sbuild-build-depends-fast5-dummy zlib1g-dev 0 upgraded, 89 newly installed, 1 to remove and 0 not upgraded. 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Setting up libbsd0:armhf (0.8.6-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-4ubuntu1) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:armhf (1:5.32-1) ... Setting up libcroco3:armhf (0.6.12-1) ... Setting up libjpeg-turbo8-dev:armhf (1.5.2-0ubuntu5) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libexpat1-dev:armhf (2.2.3-1) ... Setting up libboost-python1.62.0 (1.62.0+dfsg-4build3) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up hdf5-helpers (1.10.0-patch1+docs-4) ... Setting up libpython2.7-stdlib:armhf (2.7.14-2ubuntu2) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libmpdec2:armhf (2.4.2-1) ... Setting up libsz2:armhf (0.3.2-2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libpython3.6-stdlib:armhf (3.6.3-1ubuntu1) ... Setting up python3.6 (3.6.3-1ubuntu1) ... Setting up libhdf5-100:armhf (1.10.0-patch1+docs-4) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libaec-dev:armhf (0.3.2-2) ... Setting up python2.7 (2.7.14-2ubuntu2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-1) ... Setting up libpython-stdlib:armhf (2.7.14-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libpython2.7:armhf (2.7.14-2ubuntu2) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:armhf (2.7.14-2ubuntu2) ... Setting up python2.7-dev (2.7.14-2ubuntu2) ... Setting up python (2.7.14-2ubuntu1) ... Setting up libpython3.6:armhf (3.6.3-1ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up libpython3-stdlib:armhf (3.6.3-0ubuntu2) ... Setting up libpython-dev:armhf (2.7.14-2ubuntu1) ... Setting up libhdf5-cpp-100:armhf (1.10.0-patch1+docs-4) ... Setting up po-debconf (1.0.20) ... Setting up python-dev (2.7.14-2ubuntu1) ... Setting up libpython-all-dev:armhf (2.7.14-2ubuntu1) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python-pkg-resources (36.2.7-2) ... Setting up libpython3.6-dev:armhf (3.6.3-1ubuntu1) ... Setting up cython (0.25.2-2build3) ... Setting up python3.6-dev (3.6.3-1ubuntu1) ... Setting up python-all (2.7.14-2ubuntu1) ... Setting up libpython3-dev:armhf (3.6.3-0ubuntu2) ... Setting up python-setuptools (36.2.7-2) ... Setting up python-all-dev (2.7.14-2ubuntu1) ... Setting up libpython3-all-dev:armhf (3.6.3-0ubuntu2) ... Setting up dh-autoreconf (14) ... Setting up python3 (3.6.3-0ubuntu2) ... Setting up python3-dev (3.6.3-0ubuntu2) ... Setting up python3-pkg-resources (36.2.7-2) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up python3-all (3.6.3-0ubuntu2) ... Setting up cython3 (0.25.2-2build3) ... Setting up python3-setuptools (36.2.7-2) ... Setting up dh-python (2.20170125) ... Setting up debhelper (10.7.2ubuntu2) ... Setting up python3-all-dev (3.6.3-0ubuntu2) ... Setting up libboost-python1.62-dev (1.62.0+dfsg-4build3) ... Setting up libboost-python-dev (1.62.0.1) ... Setting up sbuild-build-depends-fast5-dummy (0.invalid.0) ... (Reading database ... 30850 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic arm64 (armv7l) Toolchain package versions: binutils_2.29.1-4ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-7_7.2.0-8ubuntu3 gcc-7_7.2.0-8ubuntu3 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-8ubuntu3 libstdc++6_7.2.0-8ubuntu3 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.5 apt-transport-https_1.5 autoconf_2.69-11 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu102 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.29.1-4ubuntu1 binutils-arm-linux-gnueabihf_2.29.1-4ubuntu1 binutils-common_2.29.1-4ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-8ubuntu3 cython_0.25.2-2build3 cython3_0.25.2-2build3 dash_0.5.8-2.3ubuntu1 debconf_1.5.63 debhelper_10.7.2ubuntu2 debianutils_4.8.2 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.1-0ubuntu4 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-8ubuntu3 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-8ubuntu3 gcc-7-base_7.2.0-8ubuntu3 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hdf5-helpers_1.10.0-patch1+docs-4 hostname_3.18 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libaec-dev_0.3.2-2 libaec0_0.3.2-2 libapparmor1_2.11.0-2ubuntu17 libapt-pkg5.0_1.5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-8ubuntu3 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.3-3 libatomic1_7.2.0-8ubuntu3 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbinutils_2.29.1-4ubuntu1 libblkid1_2.30.1-0ubuntu4 libboost-python-dev_1.62.0.1 libboost-python1.62-dev_1.62.0+dfsg-4build3 libboost-python1.62.0_1.62.0+dfsg-4build3 libboost1.62-dev_1.62.0+dfsg-4build3 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcap-ng0_0.7.7-3build1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-8ubuntu3 libcilkrts5_7.2.0-8ubuntu3 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3-gnutls_7.55.1-1ubuntu2 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.18.24ubuntu1 libexpat1_2.2.3-1 libexpat1-dev_2.2.3-1 libfakeroot_1.21-1ubuntu2 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libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.1-0ubuntu4 libmpc3_1.0.3-2 libmpdec2_2.4.2-1 libmpfr4_3.1.6-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-5ubuntu3 libperl5.26_5.26.0-8ubuntu1 libpipeline1_1.4.2-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.18.0-2 libpython-all-dev_2.7.14-2ubuntu1 libpython-dev_2.7.14-2ubuntu1 libpython-stdlib_2.7.14-2ubuntu1 libpython2.7_2.7.14-2ubuntu2 libpython2.7-dev_2.7.14-2ubuntu2 libpython2.7-minimal_2.7.14-2ubuntu2 libpython2.7-stdlib_2.7.14-2ubuntu2 libpython3-all-dev_3.6.3-0ubuntu2 libpython3-dev_3.6.3-0ubuntu2 libpython3-stdlib_3.6.3-0ubuntu2 libpython3.6_3.6.3-1ubuntu1 libpython3.6-dev_3.6.3-1ubuntu1 libpython3.6-minimal_3.6.3-1ubuntu1 libpython3.6-stdlib_3.6.3-1ubuntu1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-1 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.1-0ubuntu4 libsqlite3-0_3.19.3-3 libss2_1.43.5-1 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-7-dev_7.2.0-8ubuntu3 libstdc++6_7.2.0-8ubuntu3 libsystemd0_234-2ubuntu12 libsz2_0.3.2-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.2.0-8ubuntu3 libudev1_234-2ubuntu12 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu4 libwind0-heimdal_7.4.0.dfsg.1-2 libxml2_2.9.4+dfsg1-4ubuntu1 linux-libc-dev_4.13.0-16.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.30.1-0ubuntu4 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.0-8ubuntu1 perl-base_5.26.0-8ubuntu1 perl-modules-5.26_5.26.0-8ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-all_2.7.14-2ubuntu1 python-all-dev_2.7.14-2ubuntu1 python-dev_2.7.14-2ubuntu1 python-minimal_2.7.14-2ubuntu1 python-pkg-resources_36.2.7-2 python-setuptools_36.2.7-2 python2.7_2.7.14-2ubuntu2 python2.7-dev_2.7.14-2ubuntu2 python2.7-minimal_2.7.14-2ubuntu2 python3_3.6.3-0ubuntu2 python3-all_3.6.3-0ubuntu2 python3-all-dev_3.6.3-0ubuntu2 python3-dev_3.6.3-0ubuntu2 python3-minimal_3.6.3-0ubuntu2 python3-pkg-resources_36.2.7-2 python3-setuptools_36.2.7-2 python3.6_3.6.3-1ubuntu1 python3.6-dev_3.6.3-1ubuntu1 python3.6-minimal_3.6.3-1ubuntu1 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fast5-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2ubuntu12 systemd-sysv_234-2ubuntu12 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-2 tzdata_2017b-2 ubuntu-keyring_2016.10.27 util-linux_2.30.1-0ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Oct 18 00:06:18 2017 UTC gpgv: using RSA key gpgv: issuer "afif@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fast5_0.6.3-1.dsc dpkg-source: info: extracting fast5 in fast5-0.6.3 dpkg-source: info: unpacking fast5_0.6.3.orig.tar.gz dpkg-source: info: unpacking fast5_0.6.3-1.debian.tar.xz dpkg-source: info: applying rpath.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13590421 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13590421 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13590421 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build fast5-0.6.3 dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from fast5-0.6.3/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' cd src && /usr/bin/make clean make[2]: Entering directory '/<>/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/<>/src' dh_auto_clean I: pybuild base:184: python2.7 setup.py clean Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/<>/.pybuild/pythonX.Y_2.7/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:184: python3.6 setup.py clean running clean removing '/<>/.pybuild/pythonX.Y_3.6/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.6' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: Leaving directory '/<>' dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules build-arch dh build-arch --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:184: python2.7 setup.py config Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config I: pybuild base:184: python3.6 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:184: /usr/bin/python setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-armhf-2.7 creating build/temp.linux-armhf-2.7/fast5 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python2.7 -c fast5/fast5.cpp -o build/temp.linux-armhf-2.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_11File_Packer_1__init__(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:8349:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); fast5/fast5.cpp:8350:9: note: here case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); ^~~~ fast5/fast5.cpp:8350:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); fast5/fast5.cpp:8351:9: note: here case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); ^~~~ fast5/fast5.cpp:8351:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); fast5/fast5.cpp:8352:9: note: here case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); ^~~~ fast5/fast5.cpp:8352:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:8353:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:8363:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:8364:9: note: here case 1: ^~~~ fast5/fast5.cpp:8368:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:8369:9: note: here case 2: ^~~~ fast5/fast5.cpp:8373:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:8374:9: note: here case 3: ^~~~ fast5/fast5.cpp:8378:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:8379:9: note: here case 4: ^~~~ fast5/fast5.cpp:8390:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); fast5/fast5.cpp:8391:9: note: here case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); ^~~~ fast5/fast5.cpp:8391:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); fast5/fast5.cpp:8392:9: note: here case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); ^~~~ fast5/fast5.cpp:8392:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); fast5/fast5.cpp:8393:9: note: here case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); ^~~~ fast5/fast5.cpp:8393:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:8394:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_11File_Packer_11run(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:8780:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:8781:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:8788:90: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ifn)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:8790:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_4File_1__init__(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:1374:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1375:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:1385:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:1386:9: note: here case 1: ^~~~ fast5/fast5.cpp:1397:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1398:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_113get_basecall_events(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7745:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7746:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7753:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7755:9: note: here case 1: ^~~~ fast5/fast5.cpp:7766:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7767:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_111get_basecall_events_params(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7581:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7582:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7589:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7591:9: note: here case 1: ^~~~ fast5/fast5.cpp:7602:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7603:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_109have_basecall_events_pack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7464:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7465:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7472:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7474:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_107have_basecall_events_unpack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7348:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7349:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7356:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7358:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_105have_basecall_events(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7198:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7199:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7206:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7208:9: note: here case 1: ^~~~ fast5/fast5.cpp:7219:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7220:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_103get_basecall_model(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7034:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7035:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7042:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7044:9: note: here case 1: ^~~~ fast5/fast5.cpp:7055:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7056:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_101get_basecall_model_params(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6870:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6871:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6878:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6880:9: note: here case 1: ^~~~ fast5/fast5.cpp:6891:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6892:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_99get_basecall_model_file(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6706:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6707:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6714:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6716:9: note: here case 1: ^~~~ fast5/fast5.cpp:6727:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6728:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_97have_basecall_model(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6555:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6556:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6563:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6565:9: note: here case 1: ^~~~ fast5/fast5.cpp:6576:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6577:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_95get_basecall_seq(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6391:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6392:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6399:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6401:9: note: here case 1: ^~~~ fast5/fast5.cpp:6412:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6413:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_93have_basecall_seq(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6240:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6241:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6248:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6250:9: note: here case 1: ^~~~ fast5/fast5.cpp:6261:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6262:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_91get_basecall_fastq(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6076:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6077:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6084:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6086:9: note: here case 1: ^~~~ fast5/fast5.cpp:6097:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6098:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_89have_basecall_fastq_pack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:5959:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5960:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:5967:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:5969:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_87have_basecall_fastq_unpack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:5843:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5844:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:5851:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:5853:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_85have_basecall_fastq(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:5693:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5694:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:5701:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:5703:9: note: here case 1: ^~~~ fast5/fast5.cpp:5714:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5715:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_69have_basecall_strand_group(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:5073:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5074:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:5081:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:5083:9: note: here case 1: ^~~~ fast5/fast5.cpp:5094:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5095:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_61get_eventdetection_events(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:4604:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4605:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:4615:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:4616:9: note: here case 1: ^~~~ fast5/fast5.cpp:4627:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4628:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_59get_eventdetection_events_params(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:4397:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4398:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:4408:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:4409:9: note: here case 1: ^~~~ fast5/fast5.cpp:4420:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4421:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_57have_eventdetection_events_pack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:4279:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4280:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:4287:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:4289:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_55have_eventdetection_events_unpack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:4163:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4164:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:4171:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:4173:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_53have_eventdetection_events(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:3977:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:3978:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:3988:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:3989:9: note: here case 1: ^~~~ fast5/fast5.cpp:4000:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4001:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_11create(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:1910:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1911:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:1918:96: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:1920:9: note: here case 1: ^~~~ fast5/fast5.cpp:1931:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1932:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_9open(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:1747:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1748:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:1755:96: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:1757:9: note: here case 1: ^~~~ fast5/fast5.cpp:1768:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1769:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ In file included from /usr/include/c++/7/vector:69:0, from fast5/fast5.cpp:487: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from fast5/fast5.cpp:487: /usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void fast5::File_Packer::pack_ed(const fast5::File&, fast5::File&, fast5::File_Packer::Counts&) const’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-83PM0r/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<>/.pybuild/pythonX.Y_2.7/build/fast5.so running build_scripts creating build/scripts-2.7 copying and adjusting bin/f5ls -> build/scripts-2.7 copying and adjusting bin/f5pack -> build/scripts-2.7 changing mode of build/scripts-2.7/f5ls from 664 to 775 changing mode of build/scripts-2.7/f5pack from 664 to 775 I: pybuild base:184: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build/temp.linux-armhf-3.6 creating build/temp.linux-armhf-3.6/fast5 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.6m -c fast5/fast5.cpp -o build/temp.linux-armhf-3.6/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_11File_Packer_1__init__(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:8349:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); fast5/fast5.cpp:8350:9: note: here case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); ^~~~ fast5/fast5.cpp:8350:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); fast5/fast5.cpp:8351:9: note: here case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); ^~~~ fast5/fast5.cpp:8351:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); fast5/fast5.cpp:8352:9: note: here case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); ^~~~ fast5/fast5.cpp:8352:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:8353:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:8363:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:8364:9: note: here case 1: ^~~~ fast5/fast5.cpp:8368:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:8369:9: note: here case 2: ^~~~ fast5/fast5.cpp:8373:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:8374:9: note: here case 3: ^~~~ fast5/fast5.cpp:8378:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:8379:9: note: here case 4: ^~~~ fast5/fast5.cpp:8390:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); fast5/fast5.cpp:8391:9: note: here case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); ^~~~ fast5/fast5.cpp:8391:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); fast5/fast5.cpp:8392:9: note: here case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); ^~~~ fast5/fast5.cpp:8392:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); fast5/fast5.cpp:8393:9: note: here case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); ^~~~ fast5/fast5.cpp:8393:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:8394:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_11File_Packer_11run(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:8780:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:8781:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:8788:90: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ifn)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:8790:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_4File_1__init__(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:1374:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1375:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:1385:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:1386:9: note: here case 1: ^~~~ fast5/fast5.cpp:1397:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1398:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_113get_basecall_events(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7745:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7746:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7753:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7755:9: note: here case 1: ^~~~ fast5/fast5.cpp:7766:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7767:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_111get_basecall_events_params(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7581:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7582:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7589:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7591:9: note: here case 1: ^~~~ fast5/fast5.cpp:7602:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7603:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_109have_basecall_events_pack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7464:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7465:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7472:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7474:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_107have_basecall_events_unpack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7348:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7349:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7356:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7358:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_105have_basecall_events(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7198:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7199:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7206:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7208:9: note: here case 1: ^~~~ fast5/fast5.cpp:7219:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7220:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_103get_basecall_model(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:7034:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7035:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:7042:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:7044:9: note: here case 1: ^~~~ fast5/fast5.cpp:7055:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:7056:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_101get_basecall_model_params(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6870:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6871:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6878:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6880:9: note: here case 1: ^~~~ fast5/fast5.cpp:6891:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6892:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_99get_basecall_model_file(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6706:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6707:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6714:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6716:9: note: here case 1: ^~~~ fast5/fast5.cpp:6727:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6728:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_97have_basecall_model(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6555:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6556:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6563:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6565:9: note: here case 1: ^~~~ fast5/fast5.cpp:6576:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6577:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_95get_basecall_seq(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6391:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6392:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6399:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6401:9: note: here case 1: ^~~~ fast5/fast5.cpp:6412:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6413:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_93have_basecall_seq(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6240:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6241:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6248:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6250:9: note: here case 1: ^~~~ fast5/fast5.cpp:6261:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6262:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_91get_basecall_fastq(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:6076:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6077:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:6084:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:6086:9: note: here case 1: ^~~~ fast5/fast5.cpp:6097:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:6098:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_89have_basecall_fastq_pack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:5959:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5960:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:5967:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:5969:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_87have_basecall_fastq_unpack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:5843:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5844:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:5851:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:5853:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_85have_basecall_fastq(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:5693:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5694:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:5701:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:5703:9: note: here case 1: ^~~~ fast5/fast5.cpp:5714:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5715:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_69have_basecall_strand_group(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:5073:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5074:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:5081:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:5083:9: note: here case 1: ^~~~ fast5/fast5.cpp:5094:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:5095:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_61get_eventdetection_events(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:4604:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4605:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:4615:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:4616:9: note: here case 1: ^~~~ fast5/fast5.cpp:4627:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4628:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_59get_eventdetection_events_params(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:4397:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4398:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:4408:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:4409:9: note: here case 1: ^~~~ fast5/fast5.cpp:4420:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4421:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_57have_eventdetection_events_pack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:4279:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4280:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:4287:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:4289:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_55have_eventdetection_events_unpack(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:4163:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4164:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:4171:89: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:4173:9: note: here case 1: ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_53have_eventdetection_events(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:3977:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:3978:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:3988:9: warning: this statement may fall through [-Wimplicit-fallthrough=] } ^ fast5/fast5.cpp:3989:9: note: here case 1: ^~~~ fast5/fast5.cpp:4000:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:4001:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_11create(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:1910:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1911:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:1918:96: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:1920:9: note: here case 1: ^~~~ fast5/fast5.cpp:1931:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1932:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_9open(PyObject*, PyObject*, PyObject*)’: fast5/fast5.cpp:1747:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1748:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ fast5/fast5.cpp:1755:96: warning: this statement may fall through [-Wimplicit-fallthrough=] if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--; ~~~~~~~^~ fast5/fast5.cpp:1757:9: note: here case 1: ^~~~ fast5/fast5.cpp:1768:28: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); fast5/fast5.cpp:1769:9: note: here case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); ^~~~ In file included from /usr/include/c++/7/vector:69:0, from fast5/fast5.cpp:487: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from fast5/fast5.cpp:487: /usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void fast5::File_Packer::pack_ed(const fast5::File&, fast5::File&, fast5::File_Packer::Counts&) const’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<>/.pybuild/pythonX.Y_3.6/build/fast5.cpython-36m-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.6 copying and adjusting bin/f5ls -> build/scripts-3.6 copying and adjusting bin/f5pack -> build/scripts-3.6 changing mode of build/scripts-3.6/f5ls from 664 to 775 changing mode of build/scripts-3.6/f5pack from 664 to 775 debian/rules override_dh_auto_test make[1]: Entering directory '/<>' cd src && /usr/bin/make make[2]: Entering directory '/<>/src' g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5ls f5ls.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/7/vector:64:0, from /<>/src/../include/fast5.hpp:19, from f5ls.cpp:12: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/../include/fast5.hpp:19, from f5ls.cpp:12: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:63:0, from /<>/src/../include/fast5.hpp:19, from f5ls.cpp:12: /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*; _Tp = long long int]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ In file included from /usr/include/c++/7/bits/char_traits.h:39:0, from /usr/include/c++/7/ios:40, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from f5ls.cpp:9: /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = long long int*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = fast5::EventDetection_Event*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = fast5::Basecall_Event*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:63:0, from /<>/src/../include/fast5.hpp:19, from f5ls.cpp:12: /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0, from /usr/include/c++/7/bits/char_traits.h:39, from /usr/include/c++/7/ios:40, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from f5ls.cpp:9: /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = long long int*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/char_traits.h:39:0, from /usr/include/c++/7/ios:40, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from f5ls.cpp:9: /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = fast5::Basecall_Model_State*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0, from /usr/include/c++/7/bits/char_traits.h:39, from /usr/include/c++/7/ios:40, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from f5ls.cpp:9: /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5ls-full f5ls-full.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/7/vector:64:0, from /<>/src/../include/fast5.hpp:19, from f5ls-full.cpp:12: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/../include/fast5.hpp:19, from f5ls-full.cpp:12: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:63:0, from /<>/src/../include/fast5.hpp:19, from f5ls-full.cpp:12: /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*; _Tp = long long int]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ In file included from /usr/include/c++/7/bits/char_traits.h:39:0, from /usr/include/c++/7/ios:40, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from f5ls-full.cpp:9: /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = long long int*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = fast5::EventDetection_Event*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = fast5::Basecall_Event*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:63:0, from /<>/src/../include/fast5.hpp:19, from f5ls-full.cpp:12: /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::copy(__first, __last, __result); } ^ In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0, from /usr/include/c++/7/bits/char_traits.h:39, from /usr/include/c++/7/ios:40, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from f5ls-full.cpp:9: /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = long long int*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/char_traits.h:39:0, from /usr/include/c++/7/ios:40, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from f5ls-full.cpp:9: /usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator; _OI = fast5::Basecall_Model_State*]’: /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 copy(_II __first, _II __last, _OI __result) ^~~~ /usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0, from /usr/include/c++/7/bits/char_traits.h:39, from /usr/include/c++/7/ios:40, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from f5ls-full.cpp:9: /usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’: /usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __miter_base(move_iterator<_Iterator> __it) ^~~~~~~~~~~~ g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o hdf5-mod hdf5-mod.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/7/vector:69:0, from /<>/src/../include/fast5/hdf5_tools.hpp:20, from hdf5-mod.cpp:12: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:63:0, from /<>/src/../include/fast5/hdf5_tools.hpp:20, from hdf5-mod.cpp:12: /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5-mod f5-mod.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/7/vector:69:0, from /<>/src/../include/fast5.hpp:19, from f5-mod.cpp:12: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:63:0, from /<>/src/../include/fast5.hpp:19, from f5-mod.cpp:12: /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 { return std::uninitialized_copy(__first, __last, __result); } ^ /usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 uninitialized_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python dh_testroot -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:184: /usr/bin/python setup.py install --root /<>/debian/python-fast5 running install running build running build_ext running build_scripts running install_lib creating /<>/debian/python-fast5/usr creating /<>/debian/python-fast5/usr/lib creating /<>/debian/python-fast5/usr/lib/python2.7 creating /<>/debian/python-fast5/usr/lib/python2.7/dist-packages copying /<>/.pybuild/pythonX.Y_2.7/build/fast5.so -> /<>/debian/python-fast5/usr/lib/python2.7/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing top-level names to fast5.egg-info/top_level.txt writing dependency_links to fast5.egg-info/dependency_links.txt writing manifest file 'fast5.egg-info/SOURCES.txt' reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /<>/debian/python-fast5/usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python-fast5/usr/bin copying build/scripts-2.7/f5ls -> /<>/debian/python-fast5/usr/bin copying build/scripts-2.7/f5pack -> /<>/debian/python-fast5/usr/bin changing mode of /<>/debian/python-fast5/usr/bin/f5ls to 775 changing mode of /<>/debian/python-fast5/usr/bin/f5pack to 775 I: pybuild base:184: /usr/bin/python3 setup.py install --root /<>/debian/python3-fast5 running install running build running build_ext running build_scripts running install_lib creating /<>/debian/python3-fast5/usr creating /<>/debian/python3-fast5/usr/lib creating /<>/debian/python3-fast5/usr/lib/python3.6 creating /<>/debian/python3-fast5/usr/lib/python3.6/dist-packages copying /<>/.pybuild/pythonX.Y_3.6/build/fast5.cpython-36m-arm-linux-gnueabihf.so -> /<>/debian/python3-fast5/usr/lib/python3.6/dist-packages running install_egg_info running egg_info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /<>/debian/python3-fast5/usr/lib/python3.6/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-fast5/usr/bin copying build/scripts-3.6/f5ls -> /<>/debian/python3-fast5/usr/bin copying build/scripts-3.6/f5pack -> /<>/debian/python3-fast5/usr/bin changing mode of /<>/debian/python3-fast5/usr/bin/f5ls to 775 changing mode of /<>/debian/python3-fast5/usr/bin/f5pack to 775 debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ rm -rf debian/python-fast5/usr/bin/ debian/python3-fast5/usr/bin/ make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_python2 -a -O--buildsystem=pybuild -O--sourcedirectory=python I: dh_python2 fs:322: renaming fast5.so to fast5.arm-linux-gnueabihf.so dh_python3 -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -a -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: Entering directory '/<>' cd src && /usr/bin/make clean make[2]: Entering directory '/<>/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/<>/src' dh_compress -X .cpp -X .hpp make[1]: Leaving directory '/<>' dh_fixperms -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installdeb -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -a -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Versions} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Versions} dh_md5sums -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -a -O--buildsystem=pybuild -O--sourcedirectory=python INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing python-fast5 (in debian/python-fast5); do_strip: , oemstrip: pkgstriptranslations: processing python3-fast5-dbgsym (in debian/.debhelper/python3-fast5/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python3-fast5 (in debian/python3-fast5); do_strip: , oemstrip: pkgstriptranslations: processing python-fast5-dbgsym (in debian/.debhelper/python-fast5/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-fast5/DEBIAN/control, package python-fast5, directory debian/python-fast5 pkgstripfiles: Truncating usr/share/doc/python-fast5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-fast5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-fast5' in '../python-fast5_0.6.3-1_armhf.deb'. pkgstripfiles: processing control file: debian/.debhelper/python-fast5/dbgsym-root/DEBIAN/control, package python-fast5-dbgsym, directory debian/.debhelper/python-fast5/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-fast5-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-fast5-dbgsym' in 'debian/.debhelper/scratch-space/build-python-fast5/python-fast5-dbgsym_0.6.3-1_armhf.deb'. Renaming python-fast5-dbgsym_0.6.3-1_armhf.deb to python-fast5-dbgsym_0.6.3-1_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-fast5/dbgsym-root/DEBIAN/control, package python3-fast5-dbgsym, directory debian/.debhelper/python3-fast5/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-fast5-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-fast5-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-fast5/python3-fast5-dbgsym_0.6.3-1_armhf.deb'. Renaming python3-fast5-dbgsym_0.6.3-1_armhf.deb to python3-fast5-dbgsym_0.6.3-1_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-fast5/DEBIAN/control, package python3-fast5, directory debian/python3-fast5 pkgstripfiles: Truncating usr/share/doc/python3-fast5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-fast5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.3-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../fast5_0.6.3-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build fast5-0.6.3 dpkg-source: info: using options from fast5-0.6.3/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171018-0731 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fast5_0.6.3-1_armhf.changes: ---------------------------- Format: 1.8 Date: Tue, 17 Oct 2017 20:03:31 -0400 Source: fast5 Binary: fast5 libfast5-dev python-fast5 python3-fast5 Architecture: armhf Version: 0.6.3-1 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Afif Elghraoui Description: fast5 - utilities for manipulating Oxford Nanopore Fast5 files libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3 Closes: 876283 Changes: fast5 (0.6.3-1) unstable; urgency=medium . * New upstream version * Vastly simplified packaging after upstream patches accepted * Don't hard-code hdf5-serial * Fix source build in autopkgtest (Closes: #876283) Checksums-Sha1: 2503b201cb90e24af59706a394effe1c5177eac3 7611 fast5_0.6.3-1_armhf.buildinfo 33c330b4ca13cd16e182f2742f32aaa3121bc69d 1419736 python-fast5-dbgsym_0.6.3-1_armhf.ddeb 3dd48818df6666e649367c342551dcb9853b4760 181482 python-fast5_0.6.3-1_armhf.deb 06ccdc64721ff29105b0e6290a913957a9038327 1426796 python3-fast5-dbgsym_0.6.3-1_armhf.ddeb 41215c3683cb9024cee3780e825f8e86d15fd757 182290 python3-fast5_0.6.3-1_armhf.deb Checksums-Sha256: 573add6e2221eda8a04e8380de0a07240948346c9f53296784169e4e31ea412b 7611 fast5_0.6.3-1_armhf.buildinfo 84318bc487277247125ffdf805ec5dabf83b19edc72bbeba16f0126308da0e52 1419736 python-fast5-dbgsym_0.6.3-1_armhf.ddeb f4c331677dad56f3366d447fe76d49f302257e428b7c21548e549dfb9476b8f3 181482 python-fast5_0.6.3-1_armhf.deb 3a3186ce948247a9fe6983584756b233ecc0952439d493ae6eba1098d486824e 1426796 python3-fast5-dbgsym_0.6.3-1_armhf.ddeb a5eb4229588563081426d981fb1a4a8f20f5c84aca99fde3fcb035fab6d1813f 182290 python3-fast5_0.6.3-1_armhf.deb Files: c4a3ccc8d8977f7d557f11e9c429278f 7611 science optional fast5_0.6.3-1_armhf.buildinfo 5a81a515af09378a3779bf65153b577a 1419736 debug extra python-fast5-dbgsym_0.6.3-1_armhf.ddeb 01fce4e36d84483e9411f381d27409ff 181482 python optional python-fast5_0.6.3-1_armhf.deb 4cededc4762175cc26549c5b7c75cbee 1426796 debug extra python3-fast5-dbgsym_0.6.3-1_armhf.ddeb 800b45fc477ceb4bc23fe12e8bc47b4e 182290 python optional python3-fast5_0.6.3-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python-fast5_0.6.3-1_armhf.deb ------------------------------ new debian package, version 2.0. size 181482 bytes: control archive=850 bytes. 704 bytes, 16 lines control 552 bytes, 6 lines md5sums Package: python-fast5 Source: fast5 Version: 0.6.3-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 479 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libhdf5-100, libstdc++6 (>= 5.2), python (<< 2.8), python (>= 2.7~), python:any (<< 2.8), python:any (>= 2.7~) Section: python Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- Python 2 A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the Python 2 library drwxr-xr-x root/root 0 2017-10-18 00:03 ./ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/lib/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/ -rw-r--r-- root/root 278 2017-10-18 00:03 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2017-10-18 00:03 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt -rw-r--r-- root/root 6 2017-10-18 00:03 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/top_level.txt -rw-r--r-- root/root 472288 2017-10-18 00:03 ./usr/lib/python2.7/dist-packages/fast5.arm-linux-gnueabihf.so drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/share/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/share/doc/python-fast5/ -rw-r--r-- root/root 1076 2017-10-18 00:03 ./usr/share/doc/python-fast5/changelog.Debian.gz -rw-r--r-- root/root 1431 2016-08-23 05:41 ./usr/share/doc/python-fast5/copyright python3-fast5_0.6.3-1_armhf.deb ------------------------------- new debian package, version 2.0. size 182290 bytes: control archive=849 bytes. 664 bytes, 16 lines control 558 bytes, 6 lines md5sums Package: python3-fast5 Source: fast5 Version: 0.6.3-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 479 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libhdf5-100, libstdc++6 (>= 5.2), python3 (<< 3.7), python3 (>= 3.6~) Section: python Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- Python 3 A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the Python 3 library drwxr-xr-x root/root 0 2017-10-18 00:03 ./ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/lib/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/lib/python3/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/ -rw-r--r-- root/root 278 2017-10-18 00:03 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2017-10-18 00:03 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt -rw-r--r-- root/root 6 2017-10-18 00:03 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/top_level.txt -rw-r--r-- root/root 472352 2017-10-18 00:03 ./usr/lib/python3/dist-packages/fast5.cpython-36m-arm-linux-gnueabihf.so drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/share/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-10-18 00:03 ./usr/share/doc/python3-fast5/ -rw-r--r-- root/root 1076 2017-10-18 00:03 ./usr/share/doc/python3-fast5/changelog.Debian.gz -rw-r--r-- root/root 1431 2016-08-23 05:41 ./usr/share/doc/python3-fast5/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 35580 Build-Time: 360 Distribution: artful-proposed Host Architecture: armhf Install-Time: 62 Job: fast5_0.6.3-1.dsc Machine Architecture: arm64 Package: fast5 Package-Time: 425 Source-Version: 0.6.3-1 Space: 35580 Status: successful Version: 0.6.3-1 -------------------------------------------------------------------------------- Finished at 20171018-0731 Build needed 00:07:05, 35580k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=artful --arch=armhf PACKAGEBUILD-13590421 Scanning for processes to kill in build PACKAGEBUILD-13590421 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=artful --arch=armhf PACKAGEBUILD-13590421 Stopping target for build PACKAGEBUILD-13590421 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=artful --arch=armhf PACKAGEBUILD-13590421 Removing build PACKAGEBUILD-13590421