https://launchpad.net/ubuntu/+source/fast5/0.6.5-1build1/+build/15066317 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-008 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 29 Jun 03:40:30 ntpdate[1846]: adjust time server 10.211.37.1 offset -0.005013 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15066317 /home/buildd/filecache-default/b7d07d6b68ae68badf26a018a3a0291d50e41e42 Creating target for build PACKAGEBUILD-15066317 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15066317 Starting target for build PACKAGEBUILD-15066317 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15066317 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15066317 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15066317 Updating target for build PACKAGEBUILD-15066317 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 Packages [1019 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe amd64 Packages [8675 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5007 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 Packages [99.4 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [50.3 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 Packages [434 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [236 kB] Fetched 16.5 MB in 5s (3559 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libquadmath0 libreadline7 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv tar tzdata util-linux 102 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 56.4 MB of archives. After this operation, 2141 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-files amd64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo6 amd64 6.1+20180210-4ubuntu1 [84.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 debianutils amd64 4.8.6 [85.6 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 bash amd64 4.4.18-2ubuntu2 [614 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdutils amd64 1:2.32-0.1ubuntu1 [60.4 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 tar amd64 1.30+dfsg-2 [240 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg amd64 1.19.0.5ubuntu3 [1140 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libext2fs2 amd64 1.44.2-1 [157 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fsprogs amd64 1.44.2-1 [390 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-bin amd64 6.1+20180210-4ubuntu1 [163 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libperl5.26 amd64 5.26.2-6 [3545 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl amd64 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl-base amd64 5.26.2-6 [1391 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 libuuid1 amd64 2.32-0.1ubuntu1 [19.9 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 libblkid1 amd64 2.32-0.1ubuntu1 [128 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfdisk1 amd64 2.32-0.1ubuntu1 [167 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw6 amd64 6.1+20180210-4ubuntu1 [130 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libselinux1 amd64 2.8-1build1 [68.5 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmount1 amd64 2.32-0.1ubuntu1 [139 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsmartcols1 amd64 2.32-0.1ubuntu1 [86.0 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 fdisk amd64 2.32-0.1ubuntu1 [109 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 util-linux amd64 2.32-0.1ubuntu1 [916 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-passwd amd64 3.5.45 [47.4 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 libquadmath0 amd64 8.1.0-9ubuntu1 [133 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 libitm1 amd64 8.1.0-9ubuntu1 [28.0 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-8-base amd64 8.1.0-9ubuntu1 [18.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcc1 amd64 1:8.1.0-9ubuntu1 [40.7 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmpx2 amd64 8.1.0-9ubuntu1 [11.7 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblsan0 amd64 8.1.0-9ubuntu1 [132 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtsan0 amd64 8.1.0-9ubuntu1 [288 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcc1-0 amd64 8.1.0-9ubuntu1 [39.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main amd64 libatomic1 amd64 8.1.0-9ubuntu1 [9060 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgomp1 amd64 8.1.0-9ubuntu1 [76.3 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 libstdc++6 amd64 8.1.0-9ubuntu1 [399 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblz4-1 amd64 1.8.2-1ubuntu1 [86.1 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libudev1 amd64 238-5ubuntu2 [56.1 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main amd64 libapt-pkg5.0 amd64 1.7.0~alpha1 [803 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 debconf all 1.5.67 [124 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main amd64 adduser all 3.117ubuntu1 [163 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgpg-error0 amd64 1.31-1 [56.0 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcrypt20 amd64 1.8.2-2ubuntu1 [417 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpgv amd64 2.2.8-1ubuntu1 [197 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 apt amd64 1.7.0~alpha1 [1172 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libapparmor1 amd64 2.12-4ubuntu6 [31.3 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcap-ng0 amd64 0.7.9-1 [11.3 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu2 [38.6 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 libargon2-0 amd64 0~20161029-2 [19.9 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcryptsetup12 amd64 2:2.0.2-1ubuntu2 [134 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkmod2 amd64 25-1ubuntu1 [41.6 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main amd64 mount amd64 2.32-0.1ubuntu1 [104 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses6 amd64 6.1+20180210-4ubuntu1 [101 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 libprocps7 amd64 2:3.3.15-2ubuntu1 [32.6 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 procps amd64 2:3.3.15-2ubuntu1 [231 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd amd64 238-5ubuntu2 [2930 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsystemd0 amd64 238-5ubuntu2 [208 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd-sysv amd64 238-5ubuntu2 [13.7 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcom-err2 amd64 1.44.2-1 [9212 B] Get:61 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsepol1 amd64 2.8-1 [252 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsemanage-common all 2.8-1build1 [7000 B] Get:63 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsemanage1 amd64 2.8-1build1 [85.3 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main amd64 libss2 amd64 1.44.2-1 [11.1 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgmp10 amd64 2:6.1.2+dfsg-3 [240 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libp11-kit0 amd64 0.23.12-2 [184 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtasn1-6 amd64 4.13-3 [36.1 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses5 amd64 6.1+20180210-4ubuntu1 [95.2 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw5 amd64 6.1+20180210-4ubuntu1 [117 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo5 amd64 6.1+20180210-4ubuntu1 [79.3 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 readline-common all 7.0-5 [52.2 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main amd64 libreadline7 amd64 7.0-5 [123 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 libslang2 amd64 2.3.2-1ubuntu1 [425 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsqlite3-0 amd64 3.24.0-1 [506 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main amd64 libssl1.1 amd64 1.1.0g-2ubuntu5 [1129 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 openssl amd64 1.1.0g-2ubuntu5 [531 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main amd64 tzdata all 2018e-1 [188 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-x86-64-linux-gnu amd64 2.30-22ubuntu1 [1855 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-common amd64 2.30-22ubuntu1 [193 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils amd64 2.30-22ubuntu1 [3392 B] Get:81 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbinutils amd64 2.30-22ubuntu1 [502 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main amd64 libasan4 amd64 7.3.0-24ubuntu1 [359 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main amd64 libubsan0 amd64 7.3.0-24ubuntu1 [126 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcilkrts5 amd64 7.3.0-24ubuntu1 [42.5 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++-7 amd64 7.3.0-24ubuntu1 [7572 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-7 amd64 7.3.0-24ubuntu1 [7452 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main amd64 libstdc++-7-dev amd64 7.3.0-24ubuntu1 [1463 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcc-7-dev amd64 7.3.0-24ubuntu1 [2382 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp-7 amd64 7.3.0-24ubuntu1 [6738 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-7-base amd64 7.3.0-24ubuntu1 [18.9 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp amd64 4:7.3.0-3ubuntu3 [27.5 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc amd64 4:7.3.0-3ubuntu3 [5216 B] Get:93 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++ amd64 4:7.3.0-3ubuntu3 [1592 B] Get:94 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main amd64 build-essential amd64 12.5ubuntu2 [4732 B] Get:97 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fslibs amd64 1.44.2-1 [2700 B] Get:98 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 pinentry-curses amd64 1.1.0-1build1 [35.8 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnpth0 amd64 1.5-4 [7708 B] Get:100 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpg amd64 2.2.8-1ubuntu1 [470 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpgconf amd64 2.2.8-1ubuntu1 [122 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpg-agent amd64 2.2.8-1ubuntu1 [228 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcomerr2 amd64 1.44.2-1 [2700 B] Get:104 http://ftpmaster.internal/ubuntu cosmic/main amd64 libusb-0.1-4 amd64 2:0.1.12-32 [17.4 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 linux-libc-dev amd64 4.15.0-24.26 [998 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main amd64 pkgbinarymangler all 139 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.4 MB in 13s (4358 kB/s) (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_amd64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_amd64.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_amd64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_amd64.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_amd64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.2-1_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.2-1) over (1.44.1-1) ... Setting up libext2fs2:amd64 (1.44.2-1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.2-1_amd64.deb ... Unpacking e2fsprogs (1.44.2-1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.2-1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking ncurses-bin (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-4ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-6_amd64.deb ... Unpacking perl (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-6_all.deb ... Unpacking perl-modules-5.26 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-6_amd64.deb ... 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Setting up binutils-x86-64-linux-gnu (2.30-22ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up binutils (2.30-22ubuntu1) ... Setting up gcc-7 (7.3.0-24ubuntu1) ... Setting up g++-7 (7.3.0-24ubuntu1) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15066317 amd64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15066317 --arch=amd64 --dist=cosmic-proposed --nolog -A fast5_0.6.5-1build1.dsc Initiating build PACKAGEBUILD-15066317 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-008.buildd +==============================================================================+ | fast5 0.6.5-1build1 (amd64) 29 Jun 2018 03:41 | +==============================================================================+ Package: fast5 Version: 0.6.5-1build1 Source Version: 0.6.5-1build1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/fast5-gaBfu5/fast5-0.6.5' with '<>' I: NOTICE: Log filtering will replace 'build/fast5-gaBfu5' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15066317/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fast5_0.6.5-1build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Lmp9YS/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Lmp9YS/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Lmp9YS/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Lmp9YS/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Lmp9YS/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Lmp9YS/apt_archive ./ Packages [525 B] Fetched 2858 B in 213503982334601d 7h 0min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Lmp9YS/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 213503982334601d 7h 0min 15s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12677 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3 Filtered Build-Depends: debhelper (>= 11), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3 dpkg-deb: building package 'sbuild-build-depends-fast5-dummy' in '/<>/resolver-vWeiZP/apt_archive/sbuild-build-depends-fast5-dummy.deb'. Ign:1 copy:/<>/resolver-vWeiZP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vWeiZP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-vWeiZP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vWeiZP/apt_archive ./ Sources [259 B] Get:5 copy:/<>/resolver-vWeiZP/apt_archive ./ Packages [576 B] Fetched 2954 B in 213503982334601d 7h 0min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install fast5 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libboost-python-dev libboost-python1.65-dev libboost-python1.65.1 libboost1.65-dev libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu60 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsz2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.6 python3.6-dev python3.6-minimal python3.7 python3.7-dev python3.7-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.65-doc gccxml libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-context1.65-dev libboost-coroutine1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-fiber1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-iostreams1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-random1.65-dev libboost-regex1.65-dev libboost-serialization1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-test1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-setuptools-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc python3.7-venv python3.7-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libboost-python-dev libboost-python1.65-dev libboost-python1.65.1 libboost1.65-dev libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu60 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsz2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.6 python3.6-dev python3.6-minimal python3.7 python3.7-dev python3.7-minimal sbuild-build-depends-fast5-dummy zlib1g-dev 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. Need to get 173 MB of archives. After this operation, 508 MB of additional disk space will be used. Get:1 copy:/<>/resolver-vWeiZP/apt_archive ./ sbuild-build-depends-fast5-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.6-minimal amd64 3.6.6-1 [531 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 libexpat1 amd64 2.2.5-3 [80.2 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.6-minimal amd64 3.6.6-1 [1607 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 python3-minimal amd64 3.6.6-1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmpdec2 amd64 2.4.2-2 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.6-stdlib amd64 3.6.6-1 [1708 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.6 amd64 3.6.6-1 [190 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libpython3-stdlib amd64 3.6.6-1 [7144 B] Get:11 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http://ftpmaster.internal/ubuntu cosmic/main amd64 python-minimal amd64 2.7.15-3 [5996 B] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython2.7-stdlib amd64 2.7.15-1 [1911 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 python2.7 amd64 2.7.15-1 [239 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython2-stdlib amd64 2.7.15-3 [7728 B] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython-stdlib amd64 2.7.15-3 [5824 B] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 python2 amd64 2.7.15-3 [26.5 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 python amd64 2.7.15-3 [7828 B] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.7-minimal amd64 3.7.0-1 [545 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.7-minimal amd64 3.7.0-1 [1679 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic-mgc amd64 1:5.33-3 [192 kB] Get:31 http://ftpmaster.internal/ubuntu 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[39.6 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 autopoint all 0.19.8.1-6build1 [412 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/universe amd64 cython amd64 0.28.2-4 [2072 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/universe amd64 cython3 amd64 0.28.2-4 [2138 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtool all 2.4.6-2.1 [195 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-autoreconf all 19 [16.1 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 dwz amd64 0.12-2 [77.7 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext amd64 0.19.8.1-6build1 [895 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 po-debconf all 1.0.20 [232 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 debhelper all 11.3.2ubuntu1 [883 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3-lib2to3 all 3.6.6-1 [76.9 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3-distutils all 3.6.6-1 [141 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-python all 3.20180326ubuntu1 [88.4 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 hdf5-helpers amd64 1.10.0-patch1+docs-4build1 [12.3 kB] Get:62 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cosmic/universe amd64 libsz2 amd64 1.0.2-1 [5152 B] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libhdf5-100 amd64 1.10.0-patch1+docs-4build1 [1251 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-4build1 [103 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg-turbo8-dev amd64 1.5.2-0ubuntu5 [225 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:87 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:88 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:89 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libaec-dev amd64 1.0.2-1 [16.9 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 libhdf5-dev amd64 1.10.0-patch1+docs-4build1 [2504 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython-all-dev amd64 2.7.15-3 [1092 B] Get:92 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.7-stdlib amd64 3.7.0-1 [1732 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.7 amd64 3.7.0-1 [1492 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.7-dev amd64 3.7.0-1 [48.2 MB] Get:95 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libpython3-all-dev amd64 3.6.6-1 [1116 B] Get:96 http://ftpmaster.internal/ubuntu cosmic/main amd64 python-all amd64 2.7.15-3 [1072 B] Get:97 http://ftpmaster.internal/ubuntu cosmic/main amd64 python-all-dev amd64 2.7.15-3 [1096 B] Get:98 http://ftpmaster.internal/ubuntu cosmic/main amd64 python-pkg-resources all 39.2.0-1 [128 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main amd64 python-setuptools all 39.2.0-1 [331 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.7 amd64 3.7.0-1 [264 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 python3-all amd64 3.6.6-1 [1112 B] Get:102 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.7-dev amd64 3.7.0-1 [522 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 python3-all-dev amd64 3.6.6-1 [1116 B] Get:104 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3-pkg-resources all 39.2.0-1 [98.8 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3-setuptools all 39.2.0-1 [248 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 173 MB in 13s (13.2 MB/s) Selecting previously unselected package libpython3.6-minimal:amd64. (Reading database ... 12677 files and directories currently installed.) Preparing to unpack .../libpython3.6-minimal_3.6.6-1_amd64.deb ... Unpacking libpython3.6-minimal:amd64 (3.6.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.5-3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../python3.6-minimal_3.6.6-1_amd64.deb ... Unpacking python3.6-minimal (3.6.6-1) ... Setting up libpython3.6-minimal:amd64 (3.6.6-1) ... Setting up libexpat1:amd64 (2.2.5-3) ... Setting up python3.6-minimal (3.6.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12924 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.6-1_amd64.deb ... Unpacking python3-minimal (3.6.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... 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Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libboost1.65-dev:amd64 (1.65.1+dfsg-0ubuntu6) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4build1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libpython3.6-stdlib:amd64 (3.6.6-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.0-1) ... Setting up python3.6 (3.6.6-1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4build1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up python2.7 (2.7.15-1) ... Setting up python3.7 (3.7.0-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libpython3.7:amd64 (3.7.0-1) ... Setting up libpython2.7:amd64 (2.7.15-1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.7-dev:amd64 (3.7.0-1) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:amd64 (2.7.15-3) ... Setting up libpython2.7-dev:amd64 (2.7.15-1) ... Setting up python2.7-dev (2.7.15-1) ... Setting up libpython3.6:amd64 (3.6.6-1) ... Setting up libtool (2.4.6-2.1) ... Setting up libpython3-stdlib:amd64 (3.6.6-1) ... Setting up libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-4build1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.6-1) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-pkg-resources (39.2.0-1) ... Setting up python3.7-dev (3.7.0-1) ... Setting up libpython3.6-dev:amd64 (3.6.6-1) ... Setting up python2 (2.7.15-3) ... Setting up libpython2-dev:amd64 (2.7.15-3) ... Setting up libpython-stdlib:amd64 (2.7.15-3) ... Setting up python2-dev (2.7.15-3) ... Setting up cython3 (0.28.2-4) ... Setting up python3.6-dev (3.6.6-1) ... Setting up python3-lib2to3 (3.6.6-1) ... Setting up python3-distutils (3.6.6-1) ... Setting up python (2.7.15-3) ... Setting up libpython3-dev:amd64 (3.6.6-1) ... Setting up libpython-dev:amd64 (2.7.15-3) ... Setting up python-dev (2.7.15-3) ... Setting up libpython-all-dev:amd64 (2.7.15-3) ... Setting up python-pkg-resources (39.2.0-1) ... Setting up cython (0.28.2-4) ... Setting up libpython3-all-dev:amd64 (3.6.6-1) ... Setting up python3-setuptools (39.2.0-1) ... Setting up dh-python (3.20180326ubuntu1) ... Setting up python-all (2.7.15-3) ... Setting up python-setuptools (39.2.0-1) ... Setting up python3-dev (3.6.6-1) ... Setting up python-all-dev (2.7.15-3) ... Setting up libboost-python1.65-dev (1.65.1+dfsg-0ubuntu6) ... Setting up python3-all (3.6.6-1) ... Setting up libboost-python-dev (1.65.1.0ubuntu1) ... Setting up python3-all-dev (3.6.6-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-fast5-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (x86_64) Toolchain package versions: binutils_2.30-22ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-24ubuntu1 gcc-7_7.3.0-24ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-24ubuntu1 libstdc++6_8.1.0-9ubuntu1 linux-libc-dev_4.15.0-24.26 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-22ubuntu1 binutils-common_2.30-22ubuntu1 binutils-x86-64-linux-gnu_2.30-22ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-24ubuntu1 cython_0.28.2-4 cython3_0.28.2-4 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180326ubuntu1 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-24ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-24ubuntu1 gcc-7-base_7.3.0-24ubuntu1 gcc-8-base_8.1.0-9ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hdf5-helpers_1.10.0-patch1+docs-4build1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-24ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.30-22ubuntu1 libblkid1_2.32-0.1ubuntu1 libboost-python-dev_1.65.1.0ubuntu1 libboost-python1.65-dev_1.65.1+dfsg-0ubuntu6 libboost-python1.65.1_1.65.1+dfsg-0ubuntu6 libboost1.65-dev_1.65.1+dfsg-0ubuntu6 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-9ubuntu1 libcilkrts5_7.3.0-24ubuntu1 libcom-err2_1.44.2-1 libcomerr2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu2 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libelf1_0.170-0.5 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-24ubuntu1 libgcc1_1:8.1.0-9ubuntu1 libgcrypt20_1.8.2-2ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran4_7.3.0-24ubuntu1 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-9ubuntu1 libgpg-error0_1.31-1 libhdf5-100_1.10.0-patch1+docs-4build1 libhdf5-cpp-100_1.10.0-patch1+docs-4build1 libhdf5-dev_1.10.0-patch1+docs-4build1 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-9ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg-turbo8-dev_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-9ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libmpx2_8.1.0-9ubuntu1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.5-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-1 libpython2.7-dev_2.7.15-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libpython3-all-dev_3.6.6-1 libpython3-dev_3.6.6-1 libpython3-stdlib_3.6.6-1 libpython3.6_3.6.6-1 libpython3.6-dev_3.6.6-1 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libpython3.7_3.7.0-1 libpython3.7-dev_3.7.0-1 libpython3.7-minimal_3.7.0-1 libpython3.7-stdlib_3.7.0-1 libquadmath0_8.1.0-9ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-24ubuntu1 libstdc++6_8.1.0-9ubuntu1 libsystemd0_238-5ubuntu2 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1 libtsan0_8.1.0-9ubuntu1 libubsan0_7.3.0-24ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libxml2_2.9.4+dfsg1-7build1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-24.26 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build1 pkgbinarymangler_139 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-pkg-resources_39.2.0-1 python-setuptools_39.2.0-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-1 python2.7-dev_2.7.15-1 python2.7-minimal_2.7.15-1 python3_3.6.6-1 python3-all_3.6.6-1 python3-all-dev_3.6.6-1 python3-dev_3.6.6-1 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.6-1 python3-pkg-resources_39.2.0-1 python3-setuptools_39.2.0-1 python3.6_3.6.6-1 python3.6-dev_3.6.6-1 python3.6-minimal_3.6.6-1 python3.7_3.7.0-1 python3.7-dev_3.7.0-1 python3.7-minimal_3.7.0-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fast5-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Jun 28 12:45:13 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fast5_0.6.5-1build1.dsc dpkg-source: info: extracting fast5 in fast5-0.6.5 dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz dpkg-source: info: unpacking fast5_0.6.5-1build1.debian.tar.xz dpkg-source: info: applying rpath.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15066317 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15066317 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15066317 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.5-1build1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build fast5-0.6.5 dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' cd src && /usr/bin/make clean make[2]: Entering directory '/<>/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/<>/src' dh_auto_clean I: pybuild base:217: python2.7 setup.py clean Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/<>/.pybuild/cpython2_2.7_fast5/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.7_fast5/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it I: pybuild base:217: python3.6 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.6_fast5/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.6' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: Leaving directory '/<>' dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules build dh build --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=python dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: python2.7 setup.py config Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config I: pybuild base:217: python3.7 setup.py config running config I: pybuild base:217: python3.6 setup.py config running config dh_auto_build -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: /usr/bin/python setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/fast5 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python2.7 -c fast5/fast5.cpp -o build/temp.linux-amd64-2.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-MXB3kG/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/fast5/fast5.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/.pybuild/cpython2_2.7_fast5/build/fast5.so running build_scripts creating build/scripts-2.7 copying and adjusting bin/f5ls -> build/scripts-2.7 copying and adjusting bin/f5pack -> build/scripts-2.7 changing mode of build/scripts-2.7/f5ls from 664 to 775 changing mode of build/scripts-2.7/f5pack from 664 to 775 I: pybuild base:217: /usr/bin/python3.7 setup.py build running build running build_ext building 'fast5' extension creating build/temp.linux-amd64-3.7 creating build/temp.linux-amd64-3.7/fast5 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.7m -c fast5/fast5.cpp -o build/temp.linux-amd64-3.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/fast5/fast5.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/.pybuild/cpython3_3.7_fast5/build/fast5.cpython-37m-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.7 copying and adjusting bin/f5ls -> build/scripts-3.7 copying and adjusting bin/f5pack -> build/scripts-3.7 changing mode of build/scripts-3.7/f5ls from 664 to 775 changing mode of build/scripts-3.7/f5pack from 664 to 775 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build/temp.linux-amd64-3.6 creating build/temp.linux-amd64-3.6/fast5 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.6m -c fast5/fast5.cpp -o build/temp.linux-amd64-3.6/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.6/fast5/fast5.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/.pybuild/cpython3_3.6_fast5/build/fast5.cpython-36m-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.6 copying and adjusting bin/f5ls -> build/scripts-3.6 copying and adjusting bin/f5pack -> build/scripts-3.6 changing mode of build/scripts-3.6/f5ls from 664 to 775 changing mode of build/scripts-3.6/f5pack from 664 to 775 debian/rules override_dh_auto_test make[1]: Entering directory '/<>' cd src && /usr/bin/make make[2]: Entering directory '/<>/src' g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5ls f5ls.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5ls-full f5ls-full.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o hdf5-mod hdf5-mod.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5-mod f5-mod.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: /usr/bin/python setup.py install --root /<>/debian/python-fast5 running install running build running build_ext running build_scripts running install_lib creating /<>/debian/python-fast5/usr creating /<>/debian/python-fast5/usr/lib creating /<>/debian/python-fast5/usr/lib/python2.7 creating /<>/debian/python-fast5/usr/lib/python2.7/dist-packages copying /<>/.pybuild/cpython2_2.7_fast5/build/fast5.so -> /<>/debian/python-fast5/usr/lib/python2.7/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing top-level names to fast5.egg-info/top_level.txt writing dependency_links to fast5.egg-info/dependency_links.txt writing manifest file 'fast5.egg-info/SOURCES.txt' reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /<>/debian/python-fast5/usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python-fast5/usr/bin copying build/scripts-2.7/f5ls -> /<>/debian/python-fast5/usr/bin copying build/scripts-2.7/f5pack -> /<>/debian/python-fast5/usr/bin changing mode of /<>/debian/python-fast5/usr/bin/f5ls to 775 changing mode of /<>/debian/python-fast5/usr/bin/f5pack to 775 I: pybuild base:217: /usr/bin/python3.7 setup.py install --root /<>/debian/python3-fast5 running install running build running build_ext running build_scripts running install_lib creating /<>/debian/python3-fast5/usr creating /<>/debian/python3-fast5/usr/lib creating /<>/debian/python3-fast5/usr/lib/python3.7 creating /<>/debian/python3-fast5/usr/lib/python3.7/dist-packages copying /<>/.pybuild/cpython3_3.7_fast5/build/fast5.cpython-37m-x86_64-linux-gnu.so -> /<>/debian/python3-fast5/usr/lib/python3.7/dist-packages running install_egg_info running egg_info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /<>/debian/python3-fast5/usr/lib/python3.7/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-fast5/usr/bin copying build/scripts-3.7/f5ls -> /<>/debian/python3-fast5/usr/bin copying build/scripts-3.7/f5pack -> /<>/debian/python3-fast5/usr/bin changing mode of /<>/debian/python3-fast5/usr/bin/f5ls to 775 changing mode of /<>/debian/python3-fast5/usr/bin/f5pack to 775 I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/python3-fast5 running install running build running build_ext running build_scripts running install_lib creating /<>/debian/python3-fast5/usr/lib/python3.6 creating /<>/debian/python3-fast5/usr/lib/python3.6/dist-packages copying /<>/.pybuild/cpython3_3.6_fast5/build/fast5.cpython-36m-x86_64-linux-gnu.so -> /<>/debian/python3-fast5/usr/lib/python3.6/dist-packages running install_egg_info running egg_info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /<>/debian/python3-fast5/usr/lib/python3.6/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.6/f5ls -> /<>/debian/python3-fast5/usr/bin copying build/scripts-3.6/f5pack -> /<>/debian/python3-fast5/usr/bin changing mode of /<>/debian/python3-fast5/usr/bin/f5ls to 775 changing mode of /<>/debian/python3-fast5/usr/bin/f5pack to 775 debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ rm -rf debian/python-fast5/usr/bin/ debian/python3-fast5/usr/bin/ make[1]: Leaving directory '/<>' dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -O--buildsystem=pybuild -O--sourcedirectory=python dh_python2 -O--buildsystem=pybuild -O--sourcedirectory=python I: dh_python2 fs:322: renaming fast5.so to fast5.x86_64-linux-gnu.so dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: Entering directory '/<>' cd src && /usr/bin/make clean make[2]: Entering directory '/<>/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/<>/src' dh_compress -X .cpp -X .hpp make[1]: Leaving directory '/<>' dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -O--buildsystem=pybuild -O--sourcedirectory=python dh_makeshlibs -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -O--buildsystem=pybuild -O--sourcedirectory=python dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Versions} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Versions} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Versions} dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=python INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 pkgstriptranslations: processing python3-fast5 (in debian/python3-fast5); do_strip: , oemstrip: pkgstriptranslations: processing python-fast5 (in debian/python-fast5); do_strip: , oemstrip: pkgstriptranslations: processing fast5 (in debian/fast5); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-fast5/DEBIAN/control, package python3-fast5, directory debian/python3-fast5 INFO: pkgstripfiles: waiting for lock (python3-fast5) ... pkgstripfiles: processing control file: debian/python-fast5/DEBIAN/control, package python-fast5, directory debian/python-fast5 INFO: pkgstripfiles: waiting for lock (python-fast5) ... INFO: pkgstripfiles: waiting for lock (python3-fast5) ... INFO: pkgstripfiles: waiting for lock (python-fast5) ... INFO: pkgstripfiles: waiting for lock (python3-fast5) ... INFO: pkgstripfiles: waiting for lock (python-fast5) ... INFO: pkgstripfiles: waiting for lock (python3-fast5) ... INFO: pkgstripfiles: waiting for lock (python-fast5) ... INFO: pkgstripfiles: waiting for lock (python3-fast5) ... INFO: pkgstripfiles: waiting for lock (python-fast5) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fast5/DEBIAN/control, package fast5, directory debian/fast5 Searching for duplicated docs in dependency python3-fast5... symlinking changelog.Debian.gz in fast5 to file in python3-fast5 INFO: pkgstripfiles: waiting for lock (python3-fast5) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package fast5 ... INFO: pkgstripfiles: waiting for lock (python-fast5) ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fast5' in '../fast5_0.6.5-1build1_all.deb'. INFO: pkgstriptranslations version 139 pkgstriptranslations: processing libfast5-dev (in debian/libfast5-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (python3-fast5) ... INFO: pkgstripfiles: waiting for lock (python-fast5) ... pkgstripfiles: processing control file: debian/libfast5-dev/DEBIAN/control, package libfast5-dev, directory debian/libfast5-dev pkgstripfiles: Truncating usr/share/doc/libfast5-dev/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libfast5-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libfast5-dev' in '../libfast5-dev_0.6.5-1build1_all.deb'. INFO: pkgstripfiles: waiting for lock (python3-fast5) ... pkgstripfiles: Truncating usr/share/doc/python-fast5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-fast5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-fast5' in '../python-fast5_0.6.5-1build1_amd64.deb'. INFO: pkgstriptranslations version 139 pkgstripfiles: Truncating usr/share/doc/python3-fast5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-fast5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-1build1_amd64.deb'. pkgstriptranslations: processing python-fast5-dbgsym (in debian/.debhelper/python-fast5/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python-fast5/dbgsym-root/DEBIAN/control, package python-fast5-dbgsym, directory debian/.debhelper/python-fast5/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-fast5-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-fast5-dbgsym' in 'debian/.debhelper/scratch-space/build-python-fast5/python-fast5-dbgsym_0.6.5-1build1_amd64.deb'. INFO: pkgstriptranslations version 139 Renaming python-fast5-dbgsym_0.6.5-1build1_amd64.deb to python-fast5-dbgsym_0.6.5-1build1_amd64.ddeb pkgstriptranslations: processing python3-fast5-dbgsym (in debian/.debhelper/python3-fast5/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-fast5/dbgsym-root/DEBIAN/control, package python3-fast5-dbgsym, directory debian/.debhelper/python3-fast5/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-fast5-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-fast5-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-fast5/python3-fast5-dbgsym_0.6.5-1build1_amd64.deb'. Renaming python3-fast5-dbgsym_0.6.5-1build1_amd64.deb to python3-fast5-dbgsym_0.6.5-1build1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../fast5_0.6.5-1build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build fast5-0.6.5 dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180629-0346 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fast5_0.6.5-1build1_amd64.changes: ---------------------------------- Format: 1.8 Date: Thu, 28 Jun 2018 12:35:35 +0000 Source: fast5 Binary: fast5 libfast5-dev python-fast5 python3-fast5 Architecture: all amd64 Version: 0.6.5-1build1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: fast5 - utilities for manipulating Oxford Nanopore Fast5 files libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3 Changes: fast5 (0.6.5-1build1) cosmic; urgency=medium . * No-change rebuild to build for python3.7. Checksums-Sha1: ccffff1f7b75b16fd8e12f15112218f943ccd5e2 5972 fast5_0.6.5-1build1_all.deb 50db7e9341ed14799feee024f51f796f567e220d 8628 fast5_0.6.5-1build1_amd64.buildinfo 16ceef5a42c7801a0ce99640271f03c2aed7c07c 5230224 libfast5-dev_0.6.5-1build1_all.deb a3c782d1d65cb84cb9970fa5dcc64cef21bd26a2 1572416 python-fast5-dbgsym_0.6.5-1build1_amd64.ddeb 15ba9e9385f3b990ffbdf8147acb20ad79ea3a5f 211052 python-fast5_0.6.5-1build1_amd64.deb 88cc12624b79b52a0add2c450e049c7178212ca6 3115408 python3-fast5-dbgsym_0.6.5-1build1_amd64.ddeb f522cd85479084476641cafd797aef77db86b6b8 265492 python3-fast5_0.6.5-1build1_amd64.deb Checksums-Sha256: 57d36676260a88073093a1fd6a0a09e1b133dd734d04887fc67d2f53e71b53f1 5972 fast5_0.6.5-1build1_all.deb 5ade7f09ad4076b1fcad62aa2874bf821c0154408dfbab5d51abf3c7db310477 8628 fast5_0.6.5-1build1_amd64.buildinfo 39e4c94b24222b7fd564f7aac861062592a61e7d01e63ffd42a473907490c5ee 5230224 libfast5-dev_0.6.5-1build1_all.deb 8717ad7a440b55b7948fb54c5d746fecfa09107bcbf2ff4661ab0aeab9c0c3a2 1572416 python-fast5-dbgsym_0.6.5-1build1_amd64.ddeb 3707c6c1ad9ae2f38a6bb3114d63d6787057e07e6bc287cda036067388028e41 211052 python-fast5_0.6.5-1build1_amd64.deb 550759af718bf5bb637500e166017f2fa793afa3aaaa99f34ae5c90be3b2851c 3115408 python3-fast5-dbgsym_0.6.5-1build1_amd64.ddeb 5a4739195135d1f082c23c0a98dcf59c2adca9f82dca9a1558fbd01032ad9aea 265492 python3-fast5_0.6.5-1build1_amd64.deb Files: 7429217b2d147e9ce13a2e8fd3decade 5972 science optional fast5_0.6.5-1build1_all.deb 9ac738dd94e8e7a6b9e9def3d1a9ae37 8628 science optional fast5_0.6.5-1build1_amd64.buildinfo ca346b1aa36c69db5c27e4991d785a44 5230224 libdevel optional libfast5-dev_0.6.5-1build1_all.deb 96fe7cb28437167544f6a4248393c1bc 1572416 debug optional python-fast5-dbgsym_0.6.5-1build1_amd64.ddeb 1e8044348cc00dccc2abe163d57dee71 211052 python optional python-fast5_0.6.5-1build1_amd64.deb 865a91cd72fff73b805e3dcb4dddeb05 3115408 debug optional python3-fast5-dbgsym_0.6.5-1build1_amd64.ddeb 6330d0a22cf28e452df2256a0909a9f9 265492 python optional python3-fast5_0.6.5-1build1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fast5_0.6.5-1build1_all.deb --------------------------- new debian package, version 2.0. size 5972 bytes: control archive=792 bytes. 712 bytes, 15 lines control 160 bytes, 3 lines md5sums Package: fast5 Version: 0.6.5-1build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: python3:any, python3-fast5 (>= 0.6.5-1build1) Section: science Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: utilities for manipulating Oxford Nanopore Fast5 files The data produced by Oxford Nanopore Technologies (ONT) sequencers are stored in fast5 files, based on the HDF5 file format, with one file per sequenced read. This package provides utilities to inspect these files, as well as to pack them for more effficient use. drwxr-xr-x root/root 0 2018-06-28 12:35 ./ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/bin/ -rwxr-xr-x root/root 10187 2018-06-28 12:35 ./usr/bin/f5ls -rwxr-xr-x root/root 9131 2018-06-28 12:35 ./usr/bin/f5pack drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/fast5/ lrwxrwxrwx root/root 0 2018-06-28 12:35 ./usr/share/doc/fast5/changelog.Debian.gz -> ../python3-fast5/changelog.Debian.gz -rw-r--r-- root/root 1441 2017-11-10 20:49 ./usr/share/doc/fast5/copyright libfast5-dev_0.6.5-1build1_all.deb ---------------------------------- new debian package, version 2.0. size 5230224 bytes: control archive=1556 bytes. 641 bytes, 16 lines control 2471 bytes, 32 lines md5sums Package: libfast5-dev Source: fast5 Version: 0.6.5-1build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5457 Depends: libhdf5-dev | libhdf5-mpich-dev | libhdf5-openmpi-dev Section: libdevel Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- headers A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the header files for development with fast5. drwxr-xr-x root/root 0 2018-06-28 12:35 ./ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/ drwxr-xr-x root/root 0 2018-02-07 14:57 ./usr/include/ -rw-r--r-- root/root 88245 2018-02-07 14:57 ./usr/include/fast5.hpp drwxr-xr-x root/root 0 2018-02-07 14:57 ./usr/include/fast5/ -rw-r--r-- root/root 4159 2018-02-07 14:57 ./usr/include/fast5/Bit_Packer.hpp -rw-r--r-- root/root 11089 2018-02-07 14:57 ./usr/include/fast5/Huffman_Packer.hpp -rw-r--r-- root/root 2323 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ed_len_1.inl -rw-r--r-- root/root 43 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ed_skip_1.inl -rw-r--r-- root/root 68 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ev_move_1.inl -rw-r--r-- root/root 47 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ev_rel_skip_1.inl -rw-r--r-- root/root 82 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_fq_bp_1.inl -rw-r--r-- root/root 518 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_fq_qv_1.inl -rw-r--r-- root/root 4115 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_rw_1.inl -rw-r--r-- root/root 148 2018-02-07 14:57 ./usr/include/fast5/fast5_version.hpp -rw-r--r-- root/root 91150 2018-02-07 14:57 ./usr/include/fast5/hdf5_tools.hpp -rw-r--r-- root/root 12829 2018-02-07 14:57 ./usr/include/fast5/logger.hpp drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/libfast5-dev/ -rw-r--r-- root/root 1771 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/README.org -rw-r--r-- root/root 915 2018-06-28 12:35 ./usr/share/doc/libfast5-dev/changelog.Debian.gz -rw-r--r-- root/root 1441 2017-11-10 20:49 ./usr/share/doc/libfast5-dev/copyright drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/libfast5-dev/examples/ -rw-r--r-- root/root 39403 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/File_Packer.hpp -rw-r--r-- root/root 2187 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/Makefile -rw-r--r-- root/root 3382 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5-mod.cpp -rw-r--r-- root/root 1304566 2018-06-28 12:35 ./usr/share/doc/libfast5-dev/examples/f5-mod.gz -rw-r--r-- root/root 11160 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5dump.cpp -rw-r--r-- root/root 13395 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5ls-full.cpp -rw-r--r-- root/root 1510774 2018-06-28 12:35 ./usr/share/doc/libfast5-dev/examples/f5ls-full.gz -rw-r--r-- root/root 8614 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5ls.cpp -rw-r--r-- root/root 1506166 2018-06-28 12:35 ./usr/share/doc/libfast5-dev/examples/f5ls.gz -rw-r--r-- root/root 9444 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5pack.cpp -rw-r--r-- root/root 11373 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/hdf5-mod.cpp -rw-r--r-- root/root 906827 2018-06-28 12:35 ./usr/share/doc/libfast5-dev/examples/hdf5-mod.gz -rw-r--r-- root/root 1231 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/huffman-decode.cpp -rw-r--r-- root/root 962 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/huffman-encode.cpp -rw-r--r-- root/root 1830 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/hufftk.gz -rw-r--r-- root/root 7863 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/tmp.cpp python-fast5_0.6.5-1build1_amd64.deb ------------------------------------ new debian package, version 2.0. size 211052 bytes: control archive=936 bytes. 711 bytes, 16 lines control 549 bytes, 6 lines md5sums Package: python-fast5 Source: fast5 Version: 0.6.5-1build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 725 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libhdf5-100, libstdc++6 (>= 5.2), python (<< 2.8), python (>= 2.7~), python:any (<< 2.8), python:any (>= 2.7~) Section: python Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- Python 2 A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the Python 2 library drwxr-xr-x root/root 0 2018-06-28 12:35 ./ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/lib/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/ -rw-r--r-- root/root 278 2018-06-28 12:35 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2018-06-28 12:35 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt -rw-r--r-- root/root 6 2018-06-28 12:35 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/top_level.txt -rw-r--r-- root/root 724168 2018-06-28 12:35 ./usr/lib/python2.7/dist-packages/fast5.x86_64-linux-gnu.so drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/python-fast5/ -rw-r--r-- root/root 913 2018-06-28 12:35 ./usr/share/doc/python-fast5/changelog.Debian.gz -rw-r--r-- root/root 1441 2017-11-10 20:49 ./usr/share/doc/python-fast5/copyright python3-fast5_0.6.5-1build1_amd64.deb ------------------------------------- new debian package, version 2.0. size 265492 bytes: control archive=960 bytes. 672 bytes, 16 lines control 657 bytes, 7 lines md5sums Package: python3-fast5 Source: fast5 Version: 0.6.5-1build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1441 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libhdf5-100, libstdc++6 (>= 5.2), python3 (<< 3.8), python3 (>= 3.6~) Section: python Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- Python 3 A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the Python 3 library drwxr-xr-x root/root 0 2018-06-28 12:35 ./ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/lib/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/lib/python3/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/ -rw-r--r-- root/root 278 2018-06-28 12:35 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2018-06-28 12:35 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt -rw-r--r-- root/root 6 2018-06-28 12:35 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/top_level.txt -rw-r--r-- root/root 728392 2018-06-28 12:35 ./usr/lib/python3/dist-packages/fast5.cpython-36m-x86_64-linux-gnu.so -rw-r--r-- root/root 728392 2018-06-28 12:35 ./usr/lib/python3/dist-packages/fast5.cpython-37m-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-28 12:35 ./usr/share/doc/python3-fast5/ -rw-r--r-- root/root 914 2018-06-28 12:35 ./usr/share/doc/python3-fast5/changelog.Debian.gz -rw-r--r-- root/root 1441 2017-11-10 20:49 ./usr/share/doc/python3-fast5/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 91912 Build-Time: 248 Distribution: cosmic-proposed Host Architecture: amd64 Install-Time: 61 Job: fast5_0.6.5-1build1.dsc Machine Architecture: amd64 Package: fast5 Package-Time: 311 Source-Version: 0.6.5-1build1 Space: 91912 Status: successful Version: 0.6.5-1build1 -------------------------------------------------------------------------------- Finished at 20180629-0346 Build needed 00:05:11, 91912k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15066317 Scanning for processes to kill in build PACKAGEBUILD-15066317