https://launchpad.net/ubuntu/+source/fast5/0.6.5-2/+build/15627314 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-034 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 11:38:45 ntpdate[1825]: adjust time server 10.211.37.1 offset 0.004098 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15627314 /home/buildd/filecache-default/bf137a8dadabbe066906202a7cb9d7a8e3a99968 Creating target for build PACKAGEBUILD-15627314 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15627314 Starting target for build PACKAGEBUILD-15627314 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15627314 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15627314 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15627314 Updating target for build PACKAGEBUILD-15627314 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 Packages [976 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe arm64 Packages [8497 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5037 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 Packages [127 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [74.6 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 Packages [323 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [313 kB] Fetched 16.3 MB in 8s (2139 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-aarch64-linux-gnu binutils-common cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 54 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 48.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main arm64 base-files arm64 10.1ubuntu8 [60.1 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dash arm64 0.5.10.2-1 [88.0 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 findutils arm64 4.6.0+git+20181018-1 [290 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 hostname arm64 3.21 [10.9 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main arm64 libgdbm6 arm64 1.18.1-1 [26.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 libgdbm-compat4 arm64 1.18.1-1 [6016 B] Get:8 http://ftpmaster.internal/ubuntu disco/main arm64 libperl5.28 arm64 5.28.0-3 [3667 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 perl arm64 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 perl-base arm64 5.28.0-3 [1398 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.2 [616 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 sed arm64 4.5-2 [182 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 systemd-sysv arm64 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main arm64 libapparmor1 arm64 2.12-4ubuntu10 [29.1 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main arm64 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main arm64 libcap-ng0 arm64 0.7.9-1build1 [10.5 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu3 [38.1 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgpg-error0 arm64 1.32-3 [53.4 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libkmod2 arm64 25-1ubuntu1.1 [38.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 systemd arm64 239-7ubuntu10.1 [2757 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsystemd0 arm64 239-7ubuntu10.1 [195 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 init arm64 1.55 [6476 B] Get:24 http://ftpmaster.internal/ubuntu disco/main arm64 libcc1-0 arm64 8.2.0-9ubuntu1 [36.3 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 libgomp1 arm64 8.2.0-9ubuntu1 [69.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libitm1 arm64 8.2.0-9ubuntu1 [24.4 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 libatomic1 arm64 8.2.0-9ubuntu1 [9124 B] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 libasan5 arm64 8.2.0-9ubuntu1 [336 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 liblsan0 arm64 8.2.0-9ubuntu1 [121 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 libtsan0 arm64 8.2.0-9ubuntu1 [269 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 libubsan1 arm64 8.2.0-9ubuntu1 [113 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 gcc-8-base arm64 8.2.0-9ubuntu1 [18.6 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libstdc++6 arm64 8.2.0-9ubuntu1 [372 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 g++-8 arm64 8.2.0-9ubuntu1 [6548 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 libstdc++-8-dev arm64 8.2.0-9ubuntu1 [1513 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 libgcc-8-dev arm64 8.2.0-9ubuntu1 [857 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 gcc-8 arm64 8.2.0-9ubuntu1 [6470 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 cpp-8 arm64 8.2.0-9ubuntu1 [5713 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 libgcc1 arm64 1:8.2.0-9ubuntu1 [34.3 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 libbinutils arm64 2.31.1-7ubuntu1 [462 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 binutils-common arm64 2.31.1-7ubuntu1 [194 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 binutils arm64 2.31.1-7ubuntu1 [3364 B] Get:43 http://ftpmaster.internal/ubuntu disco/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-7ubuntu1 [2173 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main arm64 libselinux1 arm64 2.8-1build2 [64.9 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage-common all 2.8-1build2 [6892 B] Get:46 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage1 arm64 2.8-1build2 [79.7 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libudev1 arm64 239-7ubuntu10.1 [50.1 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libseccomp2 arm64 2.3.3-3ubuntu2 [38.6 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libdevmapper1.02.1 arm64 2:1.02.145-4.1ubuntu4 [109 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dmsetup arm64 2:1.02.145-4.1ubuntu4 [67.6 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsqlite3-0 arm64 3.25.3-1 [490 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main arm64 tzdata all 2018g-1 [188 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main arm64 g++ arm64 4:8.2.0-2ubuntu2 [1592 B] Get:54 http://ftpmaster.internal/ubuntu disco/main arm64 gcc arm64 4:8.2.0-2ubuntu2 [5232 B] Get:55 http://ftpmaster.internal/ubuntu disco/main arm64 cpp arm64 4:8.2.0-2ubuntu2 [27.6 kB] Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 linux-libc-dev arm64 4.18.0-11.12 [1019 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main arm64 lockfile-progs arm64 0.1.18 [9748 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 2s (21.1 MB/s) (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_arm64.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_arm64.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by bash' Adding 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20181018-1_arm64.deb ... Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ... Setting up findutils (4.6.0+git+20181018-1) ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../hostname_3.21_arm64.deb ... Unpacking hostname (3.21) over (3.20) ... Setting up hostname (3.21) ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../0-perl_5.28.0-3_arm64.deb ... Unpacking perl (5.28.0-3) over (5.26.2-7) ... Selecting previously unselected package perl-modules-5.28. Preparing to unpack .../1-perl-modules-5.28_5.28.0-3_all.deb ... Unpacking perl-modules-5.28 (5.28.0-3) ... Selecting previously unselected package libgdbm6:arm64. Preparing to unpack .../2-libgdbm6_1.18.1-1_arm64.deb ... Unpacking libgdbm6:arm64 (1.18.1-1) ... Preparing to unpack .../3-libgdbm-compat4_1.18.1-1_arm64.deb ... Unpacking libgdbm-compat4:arm64 (1.18.1-1) over (1.14.1-6) ... Selecting previously unselected package libperl5.28:arm64. Preparing to unpack .../4-libperl5.28_5.28.0-3_arm64.deb ... Unpacking libperl5.28:arm64 (5.28.0-3) ... Preparing to unpack .../5-perl-base_5.28.0-3_arm64.deb ... Unpacking perl-base (5.28.0-3) over (5.26.2-7) ... Setting up perl-base (5.28.0-3) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.2_arm64.deb ... Unpacking libdb5.3:arm64 (5.3.28+dfsg1-0.2) over (5.3.28+dfsg1-0.1) ... Setting up libdb5.3:arm64 (5.3.28+dfsg1-0.2) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../archives/sed_4.5-2_arm64.deb ... Unpacking sed (4.5-2) over (4.5-1) ... Setting up sed (4.5-2) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.55_all.deb ... Unpacking init-system-helpers (1.55) over (1.54) ... Setting up init-system-helpers (1.55) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../systemd-sysv_239-7ubuntu10.1_arm64.deb ... Unpacking systemd-sysv (239-7ubuntu10.1) over (239-7ubuntu10) ... Preparing to unpack .../libapparmor1_2.12-4ubuntu10_arm64.deb ... Unpacking libapparmor1:arm64 (2.12-4ubuntu10) over (2.12-4ubuntu8) ... Preparing to unpack .../libaudit-common_1%3a2.8.3-1ubuntu3_all.deb ... Unpacking libaudit-common (1:2.8.3-1ubuntu3) over (1:2.8.3-1ubuntu2) ... Setting up libaudit-common (1:2.8.3-1ubuntu3) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-1build1_arm64.deb ... Unpacking libcap-ng0:arm64 (0.7.9-1build1) over (0.7.9-1) ... Setting up libcap-ng0:arm64 (0.7.9-1build1) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.3-1ubuntu3_arm64.deb ... Unpacking libaudit1:arm64 (1:2.8.3-1ubuntu3) over (1:2.8.3-1ubuntu2) ... Setting up libaudit1:arm64 (1:2.8.3-1ubuntu3) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.32-3_arm64.deb ... Unpacking libgpg-error0:arm64 (1.32-3) over (1.32-1) ... Setting up libgpg-error0:arm64 (1.32-3) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libkmod2_25-1ubuntu1.1_arm64.deb ... Unpacking libkmod2:arm64 (25-1ubuntu1.1) over (25-1ubuntu1) ... Preparing to unpack .../systemd_239-7ubuntu10.1_arm64.deb ... Unpacking systemd (239-7ubuntu10.1) over (239-7ubuntu10) ... Preparing to unpack .../libsystemd0_239-7ubuntu10.1_arm64.deb ... Unpacking libsystemd0:arm64 (239-7ubuntu10.1) over (239-7ubuntu10) ... Setting up libsystemd0:arm64 (239-7ubuntu10.1) ... Setting up libapparmor1:arm64 (2.12-4ubuntu10) ... Setting up libkmod2:arm64 (25-1ubuntu1.1) ... Setting up systemd (239-7ubuntu10.1) ... Setting up systemd-sysv (239-7ubuntu10.1) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../0-init_1.55_arm64.deb ... Unpacking init (1.55) over (1.54) ... Preparing to unpack .../1-libcc1-0_8.2.0-9ubuntu1_arm64.deb ... Unpacking libcc1-0:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../2-libgomp1_8.2.0-9ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../3-libitm1_8.2.0-9ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../4-libatomic1_8.2.0-9ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../5-libasan5_8.2.0-9ubuntu1_arm64.deb ... Unpacking libasan5:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../6-liblsan0_8.2.0-9ubuntu1_arm64.deb ... Unpacking liblsan0:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../7-libtsan0_8.2.0-9ubuntu1_arm64.deb ... Unpacking libtsan0:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../8-libubsan1_8.2.0-9ubuntu1_arm64.deb ... Unpacking libubsan1:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../9-gcc-8-base_8.2.0-9ubuntu1_arm64.deb ... Unpacking gcc-8-base:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Setting up gcc-8-base:arm64 (8.2.0-9ubuntu1) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.2.0-9ubuntu1_arm64.deb ... Unpacking libstdc++6:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Setting up libstdc++6:arm64 (8.2.0-9ubuntu1) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../0-g++-8_8.2.0-9ubuntu1_arm64.deb ... Unpacking g++-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../1-libstdc++-8-dev_8.2.0-9ubuntu1_arm64.deb ... Unpacking libstdc++-8-dev:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../2-libgcc-8-dev_8.2.0-9ubuntu1_arm64.deb ... Unpacking libgcc-8-dev:arm64 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../3-gcc-8_8.2.0-9ubuntu1_arm64.deb ... Unpacking gcc-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../4-cpp-8_8.2.0-9ubuntu1_arm64.deb ... Unpacking cpp-8 (8.2.0-9ubuntu1) over (8.2.0-7ubuntu1) ... Preparing to unpack .../5-libgcc1_1%3a8.2.0-9ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:8.2.0-9ubuntu1) over (1:8.2.0-7ubuntu1) ... Setting up libgcc1:arm64 (1:8.2.0-9ubuntu1) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libbinutils_2.31.1-7ubuntu1_arm64.deb ... Unpacking libbinutils:arm64 (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils-common_2.31.1-7ubuntu1_arm64.deb ... Unpacking binutils-common:arm64 (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils_2.31.1-7ubuntu1_arm64.deb ... Unpacking binutils (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../binutils-aarch64-linux-gnu_2.31.1-7ubuntu1_arm64.deb ... Unpacking binutils-aarch64-linux-gnu (2.31.1-7ubuntu1) over (2.31.1-6ubuntu1) ... Preparing to unpack .../libselinux1_2.8-1build2_arm64.deb ... Unpacking libselinux1:arm64 (2.8-1build2) over (2.8-1build1) ... Setting up libselinux1:arm64 (2.8-1build2) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-1build2_all.deb ... Unpacking libsemanage-common (2.8-1build2) over (2.8-1build1) ... Setting up libsemanage-common (2.8-1build2) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-1build2_arm64.deb ... Unpacking libsemanage1:arm64 (2.8-1build2) over (2.8-1build1) ... Setting up libsemanage1:arm64 (2.8-1build2) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libudev1_239-7ubuntu10.1_arm64.deb ... Unpacking libudev1:arm64 (239-7ubuntu10.1) over (239-7ubuntu10) ... Setting up libudev1:arm64 (239-7ubuntu10.1) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-3ubuntu2_arm64.deb ... Unpacking libseccomp2:arm64 (2.3.3-3ubuntu2) over (2.3.3-3ubuntu1) ... Setting up libseccomp2:arm64 (2.3.3-3ubuntu2) ... (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../0-libdevmapper1.02.1_2%3a1.02.145-4.1ubuntu4_arm64.deb ... Unpacking libdevmapper1.02.1:arm64 (2:1.02.145-4.1ubuntu4) over (2:1.02.145-4.1ubuntu3) ... Preparing to unpack .../1-dmsetup_2%3a1.02.145-4.1ubuntu4_arm64.deb ... Unpacking dmsetup (2:1.02.145-4.1ubuntu4) over (2:1.02.145-4.1ubuntu3) ... Preparing to unpack .../2-libsqlite3-0_3.25.3-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.25.3-1) over (3.24.0-1) ... Preparing to unpack .../3-tzdata_2018g-1_all.deb ... Unpacking tzdata (2018g-1) over (2018e-1) ... Preparing to unpack .../4-g++_4%3a8.2.0-2ubuntu2_arm64.deb ... Unpacking g++ (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../5-gcc_4%3a8.2.0-2ubuntu2_arm64.deb ... Unpacking gcc (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../6-cpp_4%3a8.2.0-2ubuntu2_arm64.deb ... Unpacking cpp (4:8.2.0-2ubuntu2) over (4:8.2.0-1ubuntu1) ... Preparing to unpack .../7-linux-libc-dev_4.18.0-11.12_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.18.0-11.12) over (4.18.0-10.11) ... Preparing to unpack .../8-lockfile-progs_0.1.18_arm64.deb ... Unpacking lockfile-progs (0.1.18) over (0.1.17build1) ... Setting up cpp-8 (8.2.0-9ubuntu1) ... Setting up libgomp1:arm64 (8.2.0-9ubuntu1) ... Setting up libatomic1:arm64 (8.2.0-9ubuntu1) ... Setting up cpp (4:8.2.0-2ubuntu2) ... Setting up libcc1-0:arm64 (8.2.0-9ubuntu1) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Nov 9 11:39:23 UTC 2018. Universal Time is now: Fri Nov 9 11:39:23 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up libtsan0:arm64 (8.2.0-9ubuntu1) ... Setting up linux-libc-dev:arm64 (4.18.0-11.12) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.145-4.1ubuntu4) ... Setting up liblsan0:arm64 (8.2.0-9ubuntu1) ... Setting up libgdbm6:arm64 (1.18.1-1) ... Setting up binutils-common:arm64 (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:arm64 (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:arm64 (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:arm64 (8.2.0-9ubuntu1) ... Setting up libitm1:arm64 (8.2.0-9ubuntu1) ... Setting up libubsan1:arm64 (8.2.0-9ubuntu1) ... Setting up libbinutils:arm64 (2.31.1-7ubuntu1) ... Setting up libperl5.28:arm64 (5.28.0-3) ... Setting up perl (5.28.0-3) ... Setting up binutils-aarch64-linux-gnu (2.31.1-7ubuntu1) ... Setting up libgcc-8-dev:arm64 (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:arm64 (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15627314 arm64 disco-proposed -c chroot:build-PACKAGEBUILD-15627314 --arch=arm64 --dist=disco-proposed --nolog fast5_0.6.5-2.dsc Initiating build PACKAGEBUILD-15627314 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-034.buildd +==============================================================================+ | fast5 0.6.5-2 (arm64) 09 Nov 2018 11:39 | +==============================================================================+ Package: fast5 Version: 0.6.5-2 Source Version: 0.6.5-2 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/fast5-cDLq5n/fast5-0.6.5' with '<>' I: NOTICE: Log filtering will replace 'build/fast5-cDLq5n' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15627314/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fast5_0.6.5-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-tWFNvK/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-tWFNvK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tWFNvK/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-tWFNvK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tWFNvK/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-tWFNvK/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (91.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-tWFNvK/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3 Filtered Build-Depends: debhelper (>= 11), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3 dpkg-deb: building package 'sbuild-build-depends-fast5-dummy' in '/<>/resolver-PKCgA_/apt_archive/sbuild-build-depends-fast5-dummy.deb'. Ign:1 copy:/<>/resolver-PKCgA_/apt_archive ./ InRelease Get:2 copy:/<>/resolver-PKCgA_/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-PKCgA_/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-PKCgA_/apt_archive ./ Sources [259 B] Get:5 copy:/<>/resolver-PKCgA_/apt_archive ./ Packages [578 B] Fetched 2956 B in 0s (134 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install fast5 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libboost-python-dev libboost-python1.67-dev libboost-python1.67.0 libboost1.67-dev libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu60 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsz2 libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.7 python3.7-dev python3.7-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.67-doc gccxml libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-setuptools-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libboost-python-dev libboost-python1.67-dev libboost-python1.67.0 libboost1.67-dev libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu60 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libsz2 libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.7 python3.7-dev python3.7-minimal sbuild-build-depends-fast5-dummy zlib1g-dev 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 79.7 MB of archives. After this operation, 368 MB of additional disk space will be used. Get:1 copy:/<>/resolver-PKCgA_/apt_archive ./ sbuild-build-depends-fast5-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3.7-minimal arm64 3.7.1-1 [543 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main arm64 libexpat1 arm64 2.2.6-1 [68.2 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 python3.7-minimal arm64 3.7.1-1 [1358 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 python3-minimal arm64 3.7.1-1ubuntu1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main arm64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 libmpdec2 arm64 2.4.2-2 [74.0 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3.7-stdlib arm64 3.7.1-1 [1637 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 python3.7 arm64 3.7.1-1 [272 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3-stdlib arm64 3.7.1-1ubuntu1 [7128 B] Get:11 http://ftpmaster.internal/ubuntu disco/main arm64 python3 arm64 3.7.1-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpipeline1 arm64 1.5.0-2 [24.2 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 man-db arm64 2.8.4-3 [1017 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main arm64 libpython2.7-minimal arm64 2.7.15-4ubuntu4 [335 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main arm64 python2.7-minimal arm64 2.7.15-4ubuntu4 [1225 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main arm64 python2-minimal arm64 2.7.15-3 [28.1 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main arm64 python-minimal arm64 2.7.15-3 [5996 B] Get:21 http://ftpmaster.internal/ubuntu disco/main arm64 libpython2.7-stdlib arm64 2.7.15-4ubuntu4 [1885 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main arm64 python2.7 arm64 2.7.15-4ubuntu4 [239 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main arm64 libpython2-stdlib arm64 2.7.15-3 [7728 B] Get:24 http://ftpmaster.internal/ubuntu disco/main arm64 libpython-stdlib arm64 2.7.15-3 [5824 B] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 python2 arm64 2.7.15-3 [26.5 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 python arm64 2.7.15-3 [7828 B] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic-mgc arm64 1:5.34-2 [197 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic1 arm64 1:5.34-2 [69.5 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 file arm64 1:5.34-2 [22.9 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 libelf1 arm64 0.170-0.5.0ubuntu1 [43.4 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-0 arm64 2.58.1-2 [1106 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 libicu60 arm64 60.2-6ubuntu1 [7987 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libxml2 arm64 2.9.4+dfsg1-7ubuntu2 [562 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 gettext-base arm64 0.19.8.1-8 [48.1 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 m4 arm64 1.4.18-1ubuntu1 [194 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 autoconf all 2.69-11 [322 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 automake all 1:1.16.1-4 [522 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 autopoint all 0.19.8.1-8 [412 kB] Get:41 http://ftpmaster.internal/ubuntu disco/universe arm64 cython arm64 0.28.4-1build1 [1820 kB] Get:42 http://ftpmaster.internal/ubuntu disco/universe arm64 cython3 arm64 0.28.4-1build1 [1856 kB] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtool all 2.4.6-6 [195 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main arm64 dh-autoreconf all 19 [16.1 kB] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dh-strip-nondeterminism all 0.044-1 [5124 B] Get:48 http://ftpmaster.internal/ubuntu disco/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main arm64 gettext arm64 0.19.8.1-8 [853 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main arm64 po-debconf all 1.0.20 [232 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main arm64 debhelper all 11.3.2ubuntu1 [883 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main arm64 python3-lib2to3 all 3.7.1-1ubuntu3 [76.5 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main arm64 python3-distutils all 3.7.1-1ubuntu3 [141 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main arm64 dh-python all 3.20180927ubuntu2 [90.9 kB] Get:57 http://ftpmaster.internal/ubuntu disco/universe arm64 hdf5-helpers arm64 1.10.0-patch1+docs-4build2 [12.2 kB] Get:58 http://ftpmaster.internal/ubuntu disco/universe arm64 libaec0 arm64 1.0.2-1 [17.8 kB] Get:59 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libboost1.67-dev arm64 1.67.0-9 [8364 kB] Get:60 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 libboost-python1.67.0 arm64 1.67.0-9 [291 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main arm64 libpython2.7 arm64 2.7.15-4ubuntu4 [957 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main arm64 libexpat1-dev arm64 2.2.6-1 [109 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main arm64 libpython2.7-dev arm64 2.7.15-4ubuntu4 [31.5 MB] Get:64 http://ftpmaster.internal/ubuntu disco/main arm64 libpython2-dev arm64 2.7.15-3 [7784 B] Get:65 http://ftpmaster.internal/ubuntu disco/main arm64 libpython-dev arm64 2.7.15-3 [5880 B] Get:66 http://ftpmaster.internal/ubuntu disco/main arm64 python2.7-dev arm64 2.7.15-4ubuntu4 [282 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main arm64 python2-dev arm64 2.7.15-3 [1244 B] Get:68 http://ftpmaster.internal/ubuntu disco/main arm64 python-dev arm64 2.7.15-3 [1216 B] Get:69 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3.7 arm64 3.7.1-1 [1372 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3.7-dev arm64 3.7.1-1 [2374 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3-dev arm64 3.7.1-1ubuntu1 [7228 B] Get:72 http://ftpmaster.internal/ubuntu disco/main arm64 python3.7-dev arm64 3.7.1-1 [521 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main arm64 python3-dev arm64 3.7.1-1ubuntu1 [1308 B] Get:74 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 libboost-python1.67-dev arm64 1.67.0-9 [302 kB] Get:75 http://ftpmaster.internal/ubuntu disco/universe arm64 libboost-python-dev arm64 1.67.0.0ubuntu1 [3228 B] Get:76 http://ftpmaster.internal/ubuntu disco/main arm64 libgfortran5 arm64 8.2.0-9ubuntu1 [308 kB] Get:77 http://ftpmaster.internal/ubuntu disco/universe arm64 libsz2 arm64 1.0.2-1 [4948 B] Get:78 http://ftpmaster.internal/ubuntu disco/universe arm64 libhdf5-100 arm64 1.10.0-patch1+docs-4build2 [1081 kB] Get:79 http://ftpmaster.internal/ubuntu disco/universe arm64 libhdf5-cpp-100 arm64 1.10.0-patch1+docs-4build2 [98.9 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-turbo8 arm64 2.0.0-0ubuntu2 [100 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-turbo8-dev arm64 2.0.0-0ubuntu2 [214 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:84 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:85 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:86 http://ftpmaster.internal/ubuntu disco/universe arm64 libaec-dev arm64 1.0.2-1 [15.5 kB] Get:87 http://ftpmaster.internal/ubuntu disco/universe arm64 libhdf5-dev arm64 1.10.0-patch1+docs-4build2 [2547 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main arm64 libpython-all-dev arm64 2.7.15-3 [1092 B] Get:89 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3-all-dev arm64 3.7.1-1ubuntu1 [1112 B] Get:90 http://ftpmaster.internal/ubuntu disco/main arm64 python-all arm64 2.7.15-3 [1072 B] Get:91 http://ftpmaster.internal/ubuntu disco/main arm64 python-all-dev arm64 2.7.15-3 [1096 B] Get:92 http://ftpmaster.internal/ubuntu disco/main arm64 python-pkg-resources all 40.5.0-1 [129 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main arm64 python-setuptools all 40.5.0-1 [324 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main arm64 python3-all arm64 3.7.1-1ubuntu1 [1108 B] Get:95 http://ftpmaster.internal/ubuntu disco/main arm64 python3-all-dev arm64 3.7.1-1ubuntu1 [1112 B] Get:96 http://ftpmaster.internal/ubuntu disco/main arm64 python3-pkg-resources all 40.5.0-1 [99.6 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main arm64 python3-setuptools all 40.5.0-1 [249 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.7 MB in 5s (16.6 MB/s) Selecting previously unselected package libpython3.7-minimal:arm64. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.1-1_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.1-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.2.6-1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.1-1_arm64.deb ... Unpacking python3.7-minimal (3.7.1-1) ... Setting up libpython3.7-minimal:arm64 (3.7.1-1) ... Setting up libexpat1:arm64 (2.2.6-1) ... Setting up python3.7-minimal (3.7.1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14767 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.1-1ubuntu1_arm64.deb ... Unpacking python3-minimal (3.7.1-1ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:arm64. Preparing to unpack .../2-libmpdec2_2.4.2-2_arm64.deb ... Unpacking libmpdec2:arm64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:arm64. Preparing to unpack .../3-libpython3.7-stdlib_3.7.1-1_arm64.deb ... Unpacking libpython3.7-stdlib:arm64 (3.7.1-1) ... Selecting previously unselected package python3.7. Preparing to unpack .../4-python3.7_3.7.1-1_arm64.deb ... Unpacking python3.7 (3.7.1-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../5-libpython3-stdlib_3.7.1-1ubuntu1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.7.1-1ubuntu1) ... Setting up python3-minimal (3.7.1-1ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 15201 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.1-1ubuntu1_arm64.deb ... Unpacking python3 (3.7.1-1ubuntu1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../01-libbsd0_0.9.1-1_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.3-10_arm64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.0-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.4-3_arm64.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.15-4ubuntu4_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.15-4ubuntu4) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.15-4ubuntu4_arm64.deb ... Unpacking python2.7-minimal (2.7.15-4ubuntu4) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.15-3_arm64.deb ... Unpacking python2-minimal (2.7.15-3) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.15-3_arm64.deb ... Unpacking python-minimal (2.7.15-3) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../10-libpython2.7-stdlib_2.7.15-4ubuntu4_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.15-4ubuntu4) ... Selecting previously unselected package python2.7. Preparing to unpack .../11-python2.7_2.7.15-4ubuntu4_arm64.deb ... Unpacking python2.7 (2.7.15-4ubuntu4) ... Selecting previously unselected package libpython2-stdlib:arm64. Preparing to unpack .../12-libpython2-stdlib_2.7.15-3_arm64.deb ... Unpacking libpython2-stdlib:arm64 (2.7.15-3) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../13-libpython-stdlib_2.7.15-3_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.15-3) ... Setting up libpython2.7-minimal:arm64 (2.7.15-4ubuntu4) ... Setting up python2.7-minimal (2.7.15-4ubuntu4) ... Setting up python2-minimal (2.7.15-3) ... Selecting previously unselected package python2. (Reading database ... 16543 files and directories currently installed.) Preparing to unpack .../python2_2.7.15-3_arm64.deb ... Unpacking python2 (2.7.15-3) ... Setting up python-minimal (2.7.15-3) ... Selecting previously unselected package python. (Reading database ... 16575 files and directories currently installed.) Preparing to unpack .../00-python_2.7.15-3_arm64.deb ... Unpacking python (2.7.15-3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.34-2_arm64.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.34-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.34-2) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.34-2_arm64.deb ... Unpacking file (1:5.34-2) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../04-libelf1_0.170-0.5.0ubuntu1_arm64.deb ... Unpacking libelf1:arm64 (0.170-0.5.0ubuntu1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../05-libglib2.0-0_2.58.1-2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.58.1-2) ... Selecting previously unselected package libicu60:arm64. Preparing to unpack .../06-libicu60_60.2-6ubuntu1_arm64.deb ... Unpacking libicu60:arm64 (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../07-libxml2_2.9.4+dfsg1-7ubuntu2_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7ubuntu2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.19.8.1-8_arm64.deb ... Unpacking gettext-base (0.19.8.1-8) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../09-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.18-1ubuntu1_arm64.deb ... Unpacking m4 (1.4.18-1ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.19.8.1-8_all.deb ... Unpacking autopoint (0.19.8.1-8) ... Selecting previously unselected package cython. Preparing to unpack .../15-cython_0.28.4-1build1_arm64.deb ... Unpacking cython (0.28.4-1build1) ... Selecting previously unselected package cython3. Preparing to unpack .../16-cython3_0.28.4-1build1_arm64.deb ... Unpacking cython3 (0.28.4-1build1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-6_all.deb ... Unpacking libtool (2.4.6-6) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_0.044-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.044-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_0.044-1_all.deb ... Unpacking dh-strip-nondeterminism (0.044-1) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.12-2_arm64.deb ... Unpacking dwz (0.12-2) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../23-libcroco3_0.6.12-2_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.19.8.1-8_arm64.deb ... Unpacking gettext (0.19.8.1-8) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_11.3.2ubuntu1_all.deb ... Unpacking debhelper (11.3.2ubuntu1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../28-python3-lib2to3_3.7.1-1ubuntu3_all.deb ... Unpacking python3-lib2to3 (3.7.1-1ubuntu3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../29-python3-distutils_3.7.1-1ubuntu3_all.deb ... Unpacking python3-distutils (3.7.1-1ubuntu3) ... Selecting previously unselected package dh-python. Preparing to unpack .../30-dh-python_3.20180927ubuntu2_all.deb ... Unpacking dh-python (3.20180927ubuntu2) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../31-hdf5-helpers_1.10.0-patch1+docs-4build2_arm64.deb ... Unpacking hdf5-helpers (1.10.0-patch1+docs-4build2) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../32-libaec0_1.0.2-1_arm64.deb ... Unpacking libaec0:arm64 (1.0.2-1) ... Selecting previously unselected package libboost1.67-dev:arm64. Preparing to unpack .../33-libboost1.67-dev_1.67.0-9_arm64.deb ... Unpacking libboost1.67-dev:arm64 (1.67.0-9) ... Selecting previously unselected package libboost-python1.67.0. Preparing to unpack .../34-libboost-python1.67.0_1.67.0-9_arm64.deb ... Unpacking libboost-python1.67.0 (1.67.0-9) ... Selecting previously unselected package libpython2.7:arm64. Preparing to unpack .../35-libpython2.7_2.7.15-4ubuntu4_arm64.deb ... Unpacking libpython2.7:arm64 (2.7.15-4ubuntu4) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../36-libexpat1-dev_2.2.6-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.2.6-1) ... Selecting previously unselected package libpython2.7-dev:arm64. Preparing to unpack .../37-libpython2.7-dev_2.7.15-4ubuntu4_arm64.deb ... Unpacking libpython2.7-dev:arm64 (2.7.15-4ubuntu4) ... Selecting previously unselected package libpython2-dev:arm64. Preparing to unpack .../38-libpython2-dev_2.7.15-3_arm64.deb ... Unpacking libpython2-dev:arm64 (2.7.15-3) ... Selecting previously unselected package libpython-dev:arm64. Preparing to unpack .../39-libpython-dev_2.7.15-3_arm64.deb ... Unpacking libpython-dev:arm64 (2.7.15-3) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../40-python2.7-dev_2.7.15-4ubuntu4_arm64.deb ... Unpacking python2.7-dev (2.7.15-4ubuntu4) ... Selecting previously unselected package python2-dev. Preparing to unpack .../41-python2-dev_2.7.15-3_arm64.deb ... Unpacking python2-dev (2.7.15-3) ... Selecting previously unselected package python-dev. Preparing to unpack .../42-python-dev_2.7.15-3_arm64.deb ... Unpacking python-dev (2.7.15-3) ... Selecting previously unselected package libpython3.7:arm64. Preparing to unpack .../43-libpython3.7_3.7.1-1_arm64.deb ... Unpacking libpython3.7:arm64 (3.7.1-1) ... Selecting previously unselected package libpython3.7-dev:arm64. Preparing to unpack .../44-libpython3.7-dev_3.7.1-1_arm64.deb ... Unpacking libpython3.7-dev:arm64 (3.7.1-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../45-libpython3-dev_3.7.1-1ubuntu1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.7.1-1ubuntu1) ... Selecting previously unselected package python3.7-dev. Preparing to unpack .../46-python3.7-dev_3.7.1-1_arm64.deb ... Unpacking python3.7-dev (3.7.1-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../47-python3-dev_3.7.1-1ubuntu1_arm64.deb ... Unpacking python3-dev (3.7.1-1ubuntu1) ... Selecting previously unselected package libboost-python1.67-dev. Preparing to unpack .../48-libboost-python1.67-dev_1.67.0-9_arm64.deb ... Unpacking libboost-python1.67-dev (1.67.0-9) ... Selecting previously unselected package libboost-python-dev. Preparing to unpack .../49-libboost-python-dev_1.67.0.0ubuntu1_arm64.deb ... Unpacking libboost-python-dev (1.67.0.0ubuntu1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../50-libgfortran5_8.2.0-9ubuntu1_arm64.deb ... Unpacking libgfortran5:arm64 (8.2.0-9ubuntu1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../51-libsz2_1.0.2-1_arm64.deb ... Unpacking libsz2:arm64 (1.0.2-1) ... Selecting previously unselected package libhdf5-100:arm64. Preparing to unpack .../52-libhdf5-100_1.10.0-patch1+docs-4build2_arm64.deb ... Unpacking libhdf5-100:arm64 (1.10.0-patch1+docs-4build2) ... Selecting previously unselected package libhdf5-cpp-100:arm64. Preparing to unpack .../53-libhdf5-cpp-100_1.10.0-patch1+docs-4build2_arm64.deb ... Unpacking libhdf5-cpp-100:arm64 (1.10.0-patch1+docs-4build2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../54-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package libjpeg-turbo8:arm64. Preparing to unpack .../55-libjpeg-turbo8_2.0.0-0ubuntu2_arm64.deb ... Unpacking libjpeg-turbo8:arm64 (2.0.0-0ubuntu2) ... Selecting previously unselected package libjpeg-turbo8-dev:arm64. Preparing to unpack .../56-libjpeg-turbo8-dev_2.0.0-0ubuntu2_arm64.deb ... Unpacking libjpeg-turbo8-dev:arm64 (2.0.0-0ubuntu2) ... Selecting previously unselected package libjpeg8:arm64. Preparing to unpack .../57-libjpeg8_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg8:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg8-dev:arm64. Preparing to unpack .../58-libjpeg8-dev_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg8-dev:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:arm64. Preparing to unpack .../59-libjpeg-dev_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg-dev:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../60-libaec-dev_1.0.2-1_arm64.deb ... Unpacking libaec-dev:arm64 (1.0.2-1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../61-libhdf5-dev_1.10.0-patch1+docs-4build2_arm64.deb ... Unpacking libhdf5-dev (1.10.0-patch1+docs-4build2) ... Selecting previously unselected package libpython-all-dev:arm64. Preparing to unpack .../62-libpython-all-dev_2.7.15-3_arm64.deb ... Unpacking libpython-all-dev:arm64 (2.7.15-3) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../63-libpython3-all-dev_3.7.1-1ubuntu1_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.7.1-1ubuntu1) ... Selecting previously unselected package python-all. Preparing to unpack .../64-python-all_2.7.15-3_arm64.deb ... Unpacking python-all (2.7.15-3) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../65-python-all-dev_2.7.15-3_arm64.deb ... Unpacking python-all-dev (2.7.15-3) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../66-python-pkg-resources_40.5.0-1_all.deb ... Unpacking python-pkg-resources (40.5.0-1) ... Selecting previously unselected package python-setuptools. Preparing to unpack .../67-python-setuptools_40.5.0-1_all.deb ... Unpacking python-setuptools (40.5.0-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../68-python3-all_3.7.1-1ubuntu1_arm64.deb ... Unpacking python3-all (3.7.1-1ubuntu1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../69-python3-all-dev_3.7.1-1ubuntu1_arm64.deb ... Unpacking python3-all-dev (3.7.1-1ubuntu1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../70-python3-pkg-resources_40.5.0-1_all.deb ... Unpacking python3-pkg-resources (40.5.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../71-python3-setuptools_40.5.0-1_all.deb ... Unpacking python3-setuptools (40.5.0-1) ... Selecting previously unselected package sbuild-build-depends-fast5-dummy. Preparing to unpack .../72-sbuild-build-depends-fast5-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-fast5-dummy (0.invalid.0) ... Setting up libaec0:arm64 (1.0.2-1) ... Setting up libicu60:arm64 (60.2-6ubuntu1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libelf1:arm64 (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:arm64 (2.58.1-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-8) ... Setting up libjpeg-turbo8:arm64 (2.0.0-0ubuntu2) ... Setting up libpipeline1:arm64 (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:arm64 (0.9.1-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:arm64 (1:5.34-2) ... Setting up libcroco3:arm64 (0.6.12-2) ... Setting up libboost-python1.67.0 (1.67.0-9) ... Setting up libjpeg-turbo8-dev:arm64 (2.0.0-0ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:arm64 (1.67.0-9) ... Setting up libexpat1-dev:arm64 (2.2.6-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgfortran5:arm64 (8.2.0-9ubuntu1) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4build2) ... Setting up libpython2.7-stdlib:arm64 (2.7.15-4ubuntu4) ... Setting up autopoint (0.19.8.1-8) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libsz2:arm64 (1.0.2-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libpython3.7-stdlib:arm64 (3.7.1-1) ... Setting up libhdf5-100:arm64 (1.10.0-patch1+docs-4build2) ... Setting up gettext (0.19.8.1-8) ... Setting up libaec-dev:arm64 (1.0.2-1) ... Setting up python2.7 (2.7.15-4ubuntu4) ... Setting up python3.7 (3.7.1-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up libpython3.7:arm64 (3.7.1-1) ... Setting up libpython2.7:arm64 (2.7.15-4ubuntu4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.7-dev:arm64 (3.7.1-1) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:arm64 (2.7.15-3) ... Setting up libpython2.7-dev:arm64 (2.7.15-4ubuntu4) ... Setting up python2.7-dev (2.7.15-4ubuntu4) ... Setting up libpython3-dev:arm64 (3.7.1-1ubuntu1) ... Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:arm64 (3.7.1-1ubuntu1) ... Setting up libhdf5-cpp-100:arm64 (1.10.0-patch1+docs-4build2) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4build2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-pkg-resources (40.5.0-1) ... Setting up python3.7-dev (3.7.1-1) ... Setting up python2 (2.7.15-3) ... Setting up libpython2-dev:arm64 (2.7.15-3) ... Setting up libpython-stdlib:arm64 (2.7.15-3) ... Setting up libpython3-all-dev:arm64 (3.7.1-1ubuntu1) ... Setting up python2-dev (2.7.15-3) ... Setting up cython3 (0.28.4-1build1) ... Setting up python3-lib2to3 (3.7.1-1ubuntu3) ... Setting up python3-distutils (3.7.1-1ubuntu3) ... Setting up python (2.7.15-3) ... Setting up libpython-dev:arm64 (2.7.15-3) ... Setting up python-dev (2.7.15-3) ... Setting up libpython-all-dev:arm64 (2.7.15-3) ... Setting up python-pkg-resources (40.5.0-1) ... Setting up cython (0.28.4-1build1) ... Setting up python3-setuptools (40.5.0-1) ... Setting up dh-python (3.20180927ubuntu2) ... Setting up python-all (2.7.15-3) ... Setting up python-setuptools (40.5.0-1) ... Setting up python3-dev (3.7.1-1ubuntu1) ... Setting up python-all-dev (2.7.15-3) ... Setting up python3-all (3.7.1-1ubuntu1) ... Setting up libboost-python1.67-dev (1.67.0-9) ... Setting up python3-all-dev (3.7.1-1ubuntu1) ... Setting up libboost-python-dev (1.67.0.0ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-fast5-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.044-1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-aarch64-linux-gnu_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 cython_0.28.4-1build1 cython3_0.28.4-1build1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927ubuntu2 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hdf5-helpers_1.10.0-patch1+docs-4build2 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libboost-python-dev_1.67.0.0ubuntu1 libboost-python1.67-dev_1.67.0-9 libboost-python1.67.0_1.67.0-9 libboost1.67-dev_1.67.0-9 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libgfortran5_8.2.0-9ubuntu1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libhdf5-100_1.10.0-patch1+docs-4build2 libhdf5-cpp-100_1.10.0-patch1+docs-4build2 libhdf5-dev_1.10.0-patch1+docs-4build2 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-9ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg-turbo8-dev_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-9ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-4ubuntu4 libpython2.7-dev_2.7.15-4ubuntu4 libpython2.7-minimal_2.7.15-4ubuntu4 libpython2.7-stdlib_2.7.15-4ubuntu4 libpython3-all-dev_3.7.1-1ubuntu1 libpython3-dev_3.7.1-1ubuntu1 libpython3-stdlib_3.7.1-1ubuntu1 libpython3.7_3.7.1-1 libpython3.7-dev_3.7.1-1 libpython3.7-minimal_3.7.1-1 libpython3.7-stdlib_3.7.1-1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsystemd0_239-7ubuntu10.1 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtsan0_8.2.0-9ubuntu1 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu2 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-pkg-resources_40.5.0-1 python-setuptools_40.5.0-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-4ubuntu4 python2.7-dev_2.7.15-4ubuntu4 python2.7-minimal_2.7.15-4ubuntu4 python3_3.7.1-1ubuntu1 python3-all_3.7.1-1ubuntu1 python3-all-dev_3.7.1-1ubuntu1 python3-dev_3.7.1-1ubuntu1 python3-distutils_3.7.1-1ubuntu3 python3-lib2to3_3.7.1-1ubuntu3 python3-minimal_3.7.1-1ubuntu1 python3-pkg-resources_40.5.0-1 python3-setuptools_40.5.0-1 python3.7_3.7.1-1 python3.7-dev_3.7.1-1 python3.7-minimal_3.7.1-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fast5-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Oct 9 12:45:51 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fast5_0.6.5-2.dsc dpkg-source: info: extracting fast5 in fast5-0.6.5 dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz dpkg-source: info: unpacking fast5_0.6.5-2.debian.tar.xz dpkg-source: info: applying rpath.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15627314 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15627314 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15627314 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build fast5-0.6.5 dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' cd src && /usr/bin/make clean make[2]: Entering directory '/<>/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/<>/src' dh_auto_clean I: pybuild base:217: python2.7 setup.py clean Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/<>/.pybuild/cpython2_2.7_fast5/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.7_fast5/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: Leaving directory '/<>' dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules build-arch dh build-arch --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_autoreconf -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: python2.7 setup.py config Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: /usr/bin/python setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-arm64-2.7 creating build/temp.linux-arm64-2.7/fast5 aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python2.7 -c fast5/fast5.cpp -o build/temp.linux-arm64-2.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ fast5/fast5.cpp:1609:114: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] static PyMethodDef __pyx_mdef_5fast5_6Logger_1set_levels_from_options = {"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0}; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:2769:93: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] static PyMethodDef __pyx_mdef_5fast5_4File_15is_valid_file = {"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0}; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:9957:102: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] static PyMethodDef __pyx_mdef_5fast5_1__pyx_unpickle_Logger = {"__pyx_unpickle_Logger", (PyCFunction)__pyx_pw_5fast5_1__pyx_unpickle_Logger, METH_VARARGS|METH_KEYWORDS, 0}; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11560:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11653:25: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"open", (PyCFunction)__pyx_pw_5fast5_4File_9open, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11654:27: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"create", (PyCFunction)__pyx_pw_5fast5_4File_11create, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11656:34: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11665:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_33have_raw_samples, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11668:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_raw_samples_params", (PyCFunction)__pyx_pw_5fast5_4File_39get_raw_samples_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11669:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_raw_int_samples", (PyCFunction)__pyx_pw_5fast5_4File_41get_raw_int_samples, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11670:36: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_43get_raw_samples, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11672:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_eventdetection_group", (PyCFunction)__pyx_pw_5fast5_4File_47have_eventdetection_group, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11673:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_eventdetection_params", (PyCFunction)__pyx_pw_5fast5_4File_49get_eventdetection_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11674:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_eventdetection_read_name_list", (PyCFunction)__pyx_pw_5fast5_4File_51get_eventdetection_read_name_list, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11675:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_53have_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11676:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_eventdetection_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_55have_eventdetection_events_unpack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11677:52: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_eventdetection_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_57have_eventdetection_events_pack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11678:53: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_eventdetection_events_params", (PyCFunction)__pyx_pw_5fast5_4File_59get_eventdetection_events_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11679:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_61get_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11682:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_group", (PyCFunction)__pyx_pw_5fast5_4File_67have_basecall_group, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11683:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_strand_group", (PyCFunction)__pyx_pw_5fast5_4File_69have_basecall_strand_group, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11691:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_85have_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11692:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_fastq_unpack", (PyCFunction)__pyx_pw_5fast5_4File_87have_basecall_fastq_unpack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11693:45: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_fastq_pack", (PyCFunction)__pyx_pw_5fast5_4File_89have_basecall_fastq_pack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11694:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_91get_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11695:38: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_93have_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11696:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_95get_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11697:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_97have_basecall_model, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11698:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_model_file", (PyCFunction)__pyx_pw_5fast5_4File_99get_basecall_model_file, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11699:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_model_params", (PyCFunction)__pyx_pw_5fast5_4File_101get_basecall_model_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11700:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_103get_basecall_model, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11701:41: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_105have_basecall_events, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11702:48: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_107have_basecall_events_unpack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11703:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_109have_basecall_events_pack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11704:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_events_params", (PyCFunction)__pyx_pw_5fast5_4File_111get_basecall_events_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11705:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_113get_basecall_events, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11706:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_115have_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11709:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_121get_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11803:24: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"run", (PyCFunction)__pyx_pw_5fast5_11File_Packer_11run, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-NhXHOx/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/fast5/fast5.o -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /<>/.pybuild/cpython2_2.7_fast5/build/fast5.so running build_scripts creating build/scripts-2.7 copying and adjusting bin/f5ls -> build/scripts-2.7 copying and adjusting bin/f5pack -> build/scripts-2.7 changing mode of build/scripts-2.7/f5ls from 664 to 775 changing mode of build/scripts-2.7/f5pack from 664 to 775 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build/temp.linux-arm64-3.7 creating build/temp.linux-arm64-3.7/fast5 aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.7m -c fast5/fast5.cpp -o build/temp.linux-arm64-3.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial fast5/fast5.cpp:1609:114: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] static PyMethodDef __pyx_mdef_5fast5_6Logger_1set_levels_from_options = {"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0}; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:2769:93: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] static PyMethodDef __pyx_mdef_5fast5_4File_15is_valid_file = {"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0}; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:9957:102: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] static PyMethodDef __pyx_mdef_5fast5_1__pyx_unpickle_Logger = {"__pyx_unpickle_Logger", (PyCFunction)__pyx_pw_5fast5_1__pyx_unpickle_Logger, METH_VARARGS|METH_KEYWORDS, 0}; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11560:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11653:25: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"open", (PyCFunction)__pyx_pw_5fast5_4File_9open, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11654:27: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"create", (PyCFunction)__pyx_pw_5fast5_4File_11create, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11656:34: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11665:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_33have_raw_samples, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11668:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_raw_samples_params", (PyCFunction)__pyx_pw_5fast5_4File_39get_raw_samples_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11669:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_raw_int_samples", (PyCFunction)__pyx_pw_5fast5_4File_41get_raw_int_samples, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11670:36: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_43get_raw_samples, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11672:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_eventdetection_group", (PyCFunction)__pyx_pw_5fast5_4File_47have_eventdetection_group, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11673:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_eventdetection_params", (PyCFunction)__pyx_pw_5fast5_4File_49get_eventdetection_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11674:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_eventdetection_read_name_list", (PyCFunction)__pyx_pw_5fast5_4File_51get_eventdetection_read_name_list, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11675:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_53have_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11676:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_eventdetection_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_55have_eventdetection_events_unpack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11677:52: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_eventdetection_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_57have_eventdetection_events_pack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11678:53: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_eventdetection_events_params", (PyCFunction)__pyx_pw_5fast5_4File_59get_eventdetection_events_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11679:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_61get_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11682:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_group", (PyCFunction)__pyx_pw_5fast5_4File_67have_basecall_group, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11683:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_strand_group", (PyCFunction)__pyx_pw_5fast5_4File_69have_basecall_strand_group, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11691:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_85have_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11692:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_fastq_unpack", (PyCFunction)__pyx_pw_5fast5_4File_87have_basecall_fastq_unpack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11693:45: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_fastq_pack", (PyCFunction)__pyx_pw_5fast5_4File_89have_basecall_fastq_pack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11694:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_91get_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11695:38: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_93have_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11696:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_95get_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11697:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_97have_basecall_model, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11698:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_model_file", (PyCFunction)__pyx_pw_5fast5_4File_99get_basecall_model_file, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11699:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_model_params", (PyCFunction)__pyx_pw_5fast5_4File_101get_basecall_model_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11700:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_103get_basecall_model, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11701:41: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_105have_basecall_events, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11702:48: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_107have_basecall_events_unpack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11703:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_109have_basecall_events_pack, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11704:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_events_params", (PyCFunction)__pyx_pw_5fast5_4File_111get_basecall_events_params, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11705:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_113get_basecall_events, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11706:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"have_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_115have_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11709:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"get_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_121get_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp:11803:24: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type] {"run", (PyCFunction)__pyx_pw_5fast5_11File_Packer_11run, METH_VARARGS|METH_KEYWORDS, 0}, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fast5/fast5.cpp: In function ‘PyObject* __Pyx_PyCFunction_FastCall(PyObject*, PyObject**, Py_ssize_t)’: fast5/fast5.cpp:13068:54: warning: cast between incompatible function types from ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} to ‘_PyCFunctionFastWithKeywords’ {aka ‘_object* (*)(_object*, _object* const*, long int, _object*)’} [-Wcast-function-type] return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); ^~~~ fast5/fast5.cpp:13070:42: warning: cast between incompatible function types from ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} to ‘_PyCFunctionFast’ {aka ‘_object* (*)(_object*, _object* const*, long int)’} [-Wcast-function-type] return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); ^~~~ aarch64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/fast5/fast5.o -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -o /<>/.pybuild/cpython3_3.7_fast5/build/fast5.cpython-37m-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.7 copying and adjusting bin/f5ls -> build/scripts-3.7 copying and adjusting bin/f5pack -> build/scripts-3.7 changing mode of build/scripts-3.7/f5ls from 664 to 775 changing mode of build/scripts-3.7/f5pack from 664 to 775 debian/rules override_dh_auto_test make[1]: Entering directory '/<>' cd src && /usr/bin/make make[2]: Entering directory '/<>/src' g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5ls f5ls.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5ls-full f5ls-full.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o hdf5-mod hdf5-mod.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5-mod f5-mod.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python dh_testroot -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -a -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: /usr/bin/python setup.py install --root /<>/debian/python-fast5 running install running build running build_ext running build_scripts running install_lib creating /<>/debian/python-fast5/usr creating /<>/debian/python-fast5/usr/lib creating /<>/debian/python-fast5/usr/lib/python2.7 creating /<>/debian/python-fast5/usr/lib/python2.7/dist-packages copying /<>/.pybuild/cpython2_2.7_fast5/build/fast5.so -> /<>/debian/python-fast5/usr/lib/python2.7/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing top-level names to fast5.egg-info/top_level.txt writing dependency_links to fast5.egg-info/dependency_links.txt writing manifest file 'fast5.egg-info/SOURCES.txt' reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /<>/debian/python-fast5/usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python-fast5/usr/bin copying build/scripts-2.7/f5ls -> /<>/debian/python-fast5/usr/bin copying build/scripts-2.7/f5pack -> /<>/debian/python-fast5/usr/bin changing mode of /<>/debian/python-fast5/usr/bin/f5ls to 775 changing mode of /<>/debian/python-fast5/usr/bin/f5pack to 775 I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/python3-fast5 running install running build running build_ext running build_scripts running install_lib creating /<>/debian/python3-fast5/usr creating /<>/debian/python3-fast5/usr/lib creating /<>/debian/python3-fast5/usr/lib/python3.7 creating /<>/debian/python3-fast5/usr/lib/python3.7/dist-packages copying /<>/.pybuild/cpython3_3.7_fast5/build/fast5.cpython-37m-aarch64-linux-gnu.so -> /<>/debian/python3-fast5/usr/lib/python3.7/dist-packages running install_egg_info running egg_info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /<>/debian/python3-fast5/usr/lib/python3.7/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-fast5/usr/bin copying build/scripts-3.7/f5ls -> /<>/debian/python3-fast5/usr/bin copying build/scripts-3.7/f5pack -> /<>/debian/python3-fast5/usr/bin changing mode of /<>/debian/python3-fast5/usr/bin/f5ls to 775 changing mode of /<>/debian/python3-fast5/usr/bin/f5pack to 775 debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ rm -rf debian/python-fast5/usr/bin/ debian/python3-fast5/usr/bin/ make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_python2 -a -O--buildsystem=pybuild -O--sourcedirectory=python I: dh_python2 fs:329: renaming fast5.so to fast5.aarch64-linux-gnu.so dh_python3 -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -a -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: Entering directory '/<>' cd src && /usr/bin/make clean make[2]: Entering directory '/<>/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/<>/src' dh_compress -X .cpp -X .hpp make[1]: Leaving directory '/<>' dh_fixperms -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installdeb -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -a -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Versions} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Versions} dh_md5sums -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -a -O--buildsystem=pybuild -O--sourcedirectory=python INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing python3-fast5 (in debian/python3-fast5); do_strip: , oemstrip: pkgstriptranslations: processing python-fast5 (in debian/python-fast5); do_strip: , oemstrip: pkgstriptranslations: processing python3-fast5-dbgsym (in debian/.debhelper/python3-fast5/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python-fast5-dbgsym (in debian/.debhelper/python-fast5/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-fast5/DEBIAN/control, package python3-fast5, directory debian/python3-fast5 INFO: pkgstripfiles: waiting for lock (python3-fast5) ... pkgstripfiles: processing control file: debian/.debhelper/python-fast5/dbgsym-root/DEBIAN/control, package python-fast5-dbgsym, directory debian/.debhelper/python-fast5/dbgsym-root dpkg-deb: building package 'python-fast5-dbgsym' in 'debian/.debhelper/scratch-space/build-python-fast5/python-fast5-dbgsym_0.6.5-2_arm64.deb'. INFO: pkgstripfiles: waiting for lock (python3-fast5) ... INFO: pkgstripfiles: waiting for lock (python3-fast5) ... Renaming python-fast5-dbgsym_0.6.5-2_arm64.deb to python-fast5-dbgsym_0.6.5-2_arm64.ddeb INFO: pkgstripfiles: waiting for lock (python3-fast5) ... INFO: pkgstripfiles: waiting for lock (python3-fast5) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (python3-fast5) ... pkgstripfiles: processing control file: debian/python-fast5/DEBIAN/control, package python-fast5, directory debian/python-fast5 pkgstripfiles: Truncating usr/share/doc/python-fast5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-fast5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-fast5' in '../python-fast5_0.6.5-2_arm64.deb'. pkgstripfiles: processing control file: debian/.debhelper/python3-fast5/dbgsym-root/DEBIAN/control, package python3-fast5-dbgsym, directory debian/.debhelper/python3-fast5/dbgsym-root dpkg-deb: building package 'python3-fast5-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-fast5/python3-fast5-dbgsym_0.6.5-2_arm64.deb'. pkgstripfiles: Truncating usr/share/doc/python3-fast5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-fast5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-2_arm64.deb'. Renaming python3-fast5-dbgsym_0.6.5-2_arm64.deb to python3-fast5-dbgsym_0.6.5-2_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../fast5_0.6.5-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build fast5-0.6.5 dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-1146 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fast5_0.6.5-2_arm64.changes: ---------------------------- Format: 1.8 Date: Tue, 09 Oct 2018 14:34:41 +0200 Source: fast5 Binary: fast5 libfast5-dev python-fast5 python3-fast5 Architecture: arm64 Version: 0.6.5-2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: fast5 - utilities for manipulating Oxford Nanopore Fast5 files libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3 Closes: 910655 Changes: fast5 (0.6.5-2) unstable; urgency=medium . * Team upload. * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Do not install example binaries to enable reproducible builds (thanks for the patch to Chris Lamb ) Closes: #910655 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test Checksums-Sha1: c2e9f4f2aead4161dc32b99b3e25ada404364344 7698 fast5_0.6.5-2_arm64.buildinfo 2bb49665b6e6e93baa293b12908e0df58ef0458d 2552608 python-fast5-dbgsym_0.6.5-2_arm64.ddeb b0d0fbcf2943981f072566a8ebbcd4625d84da09 189472 python-fast5_0.6.5-2_arm64.deb 44bdc189d383d7ad0052af141bcbca93eb11e171 2578712 python3-fast5-dbgsym_0.6.5-2_arm64.ddeb a3e990c9968c0f33eb3d3cace2f25e9de9da3d94 190800 python3-fast5_0.6.5-2_arm64.deb Checksums-Sha256: 53d950aceed6175c67cb5f672db28b9f7325c496ff4d8ff16a5635adc702af9c 7698 fast5_0.6.5-2_arm64.buildinfo 7c80e1c4432d6c2dc37503c6c6a870caadaacde23d2c6bc2cfd78210ccc5be85 2552608 python-fast5-dbgsym_0.6.5-2_arm64.ddeb f0928621967a0fac78b60d351ade91e50711902361e8c5200ae851d5a97e29ce 189472 python-fast5_0.6.5-2_arm64.deb 0858563b712949e534bdb9632c602af3ee5886b31c3a306c4fe661f9092c9856 2578712 python3-fast5-dbgsym_0.6.5-2_arm64.ddeb bf0b28cb2cc91431724c8ff82205f4f8e08b5bb24df6d68469c5536bdf4c3c73 190800 python3-fast5_0.6.5-2_arm64.deb Files: 6ad8fb0ecb5609b7878e8bad5ff5b180 7698 science optional fast5_0.6.5-2_arm64.buildinfo 9ea8c375126b3acc20120e95b0a5a325 2552608 debug optional python-fast5-dbgsym_0.6.5-2_arm64.ddeb 7775f5bbdf91de5997d2c76017df248d 189472 python optional python-fast5_0.6.5-2_arm64.deb 0a170b1c9ea8d577b3cf87b3a7bd5c1f 2578712 debug optional python3-fast5-dbgsym_0.6.5-2_arm64.ddeb fb8e13dfdcbadd648a1ae73e7e5b67d3 190800 python optional python3-fast5_0.6.5-2_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python-fast5_0.6.5-2_arm64.deb ------------------------------ new debian package, version 2.0. size 189472 bytes: control archive=928 bytes. 705 bytes, 16 lines control 550 bytes, 6 lines md5sums Package: python-fast5 Source: fast5 Version: 0.6.5-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 688 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libhdf5-100, libstdc++6 (>= 5.2), python (<< 2.8), python (>= 2.7~), python:any (<< 2.8), python:any (>= 2.7~) Section: python Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- Python 2 A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the Python 2 library drwxr-xr-x root/root 0 2018-10-09 12:34 ./ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/ -rw-r--r-- root/root 278 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt -rw-r--r-- root/root 6 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/top_level.txt -rw-r--r-- root/root 686928 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5.aarch64-linux-gnu.so drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/python-fast5/ -rw-r--r-- root/root 1011 2018-10-09 12:34 ./usr/share/doc/python-fast5/changelog.Debian.gz -rw-r--r-- root/root 1441 2018-10-09 12:34 ./usr/share/doc/python-fast5/copyright python3-fast5_0.6.5-2_arm64.deb ------------------------------- new debian package, version 2.0. size 190800 bytes: control archive=928 bytes. 665 bytes, 16 lines control 556 bytes, 6 lines md5sums Package: python3-fast5 Source: fast5 Version: 0.6.5-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 688 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libhdf5-100, libstdc++6 (>= 5.2), python3 (<< 3.8), python3 (>= 3.7~) Section: python Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- Python 3 A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the Python 3 library drwxr-xr-x root/root 0 2018-10-09 12:34 ./ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python3/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/ -rw-r--r-- root/root 278 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt -rw-r--r-- root/root 6 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/top_level.txt -rw-r--r-- root/root 687056 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5.cpython-37m-aarch64-linux-gnu.so drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/python3-fast5/ -rw-r--r-- root/root 1010 2018-10-09 12:34 ./usr/share/doc/python3-fast5/changelog.Debian.gz -rw-r--r-- root/root 1441 2018-10-09 12:34 ./usr/share/doc/python3-fast5/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 94036 Build-Time: 351 Distribution: disco-proposed Host Architecture: arm64 Install-Time: 51 Job: fast5_0.6.5-2.dsc Machine Architecture: arm64 Package: fast5 Package-Time: 404 Source-Version: 0.6.5-2 Space: 94036 Status: successful Version: 0.6.5-2 -------------------------------------------------------------------------------- Finished at 20181109-1146 Build needed 00:06:44, 94036k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15627314 Scanning for processes to kill in build PACKAGEBUILD-15627314