https://launchpad.net/ubuntu/+source/fast5/0.6.5-7/+build/24114235 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-098 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 26 Jun 17:13:53 ntpdate[1801]: adjust time server 10.131.248.1 offset 0.000529 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24114235 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24114235 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24114235 Starting target for build PACKAGEBUILD-24114235 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24114235 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24114235 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24114235 Updating target for build PACKAGEBUILD-24114235 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1397 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5739 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 Packages [79.3 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [22.6 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe amd64 Packages [299 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [125 kB] Fetched 23.1 MB in 2s (11.3 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 85 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 81.1 MB of archives. After this operation, 5364 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libatomic1 amd64 12.1.0-4ubuntu1 [10.4 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libubsan1 amd64 12.1.0-4ubuntu1 [969 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libquadmath0 amd64 12.1.0-4ubuntu1 [152 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 liblsan0 amd64 12.1.0-4ubuntu1 [1060 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libitm1 amd64 12.1.0-4ubuntu1 [29.4 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgomp1 amd64 12.1.0-4ubuntu1 [125 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 gcc-12-base amd64 12.1.0-4ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgcc-s1 amd64 12.1.0-4ubuntu1 [54.3 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libcc1-0 amd64 12.1.0-4ubuntu1 [46.4 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libstdc++6 amd64 12.1.0-4ubuntu1 [678 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.8.3-1 [15.7 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libssl3 amd64 3.0.4-1ubuntu1 [1898 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 openssl amd64 3.0.4-1ubuntu1 [1176 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng16-16 amd64 1.6.37-5 [187 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 xz-utils amd64 5.2.5-2.1 [83.8 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:70 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 g++-11 amd64 11.3.0-3ubuntu1 [11.3 MB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++-11-dev amd64 11.3.0-3ubuntu1 [2074 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasan6 amd64 11.3.0-3ubuntu1 [2265 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11 amd64 11.3.0-3ubuntu1 [20.0 MB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-11-dev amd64 11.3.0-3ubuntu1 [2484 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtsan0 amd64 11.3.0-3ubuntu1 [2241 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic-proposed/main amd64 linux-libc-dev amd64 5.15.0-35.36+22.10.1 [1287 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since 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Setting up libgprofng0:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up libgcc-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.38.50.20220615-4ubuntu1) ... Setting up binutils (2.38.50.20220615-4ubuntu1) ... Setting up dpkg-dev (1.21.8ubuntu1) ... Setting up libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up gcc-11 (11.3.0-3ubuntu1) ... Setting up g++-11 (11.3.0-3ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24114235 amd64 kinetic-proposed -c chroot:build-PACKAGEBUILD-24114235 --arch=amd64 --dist=kinetic-proposed --nolog -A fast5_0.6.5-7.dsc Initiating build PACKAGEBUILD-24114235 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-098.buildd +==============================================================================+ | fast5 0.6.5-7 (amd64) Sun, 26 Jun 2022 17:14:09 +0000 | +==============================================================================+ Package: fast5 Version: 0.6.5-7 Source Version: 0.6.5-7 Distribution: kinetic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24114235/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/fast5-Qur2Vd/resolver-y2TD2v' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fast5_0.6.5-7.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/fast5-Qur2Vd/fast5-0.6.5' with '<>' I: NOTICE: Log filtering will replace 'build/fast5-Qur2Vd' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [413 B] Get:5 copy:/<>/apt_archive ./ Packages [498 B] Fetched 1868 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost1.74-dev libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore libldap-2.5-0 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.10 python3.10-dev python3.10-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit python3-build python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.74-doc gccxml libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.10-venv python3.10-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost1.74-dev libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore libldap-2.5-0 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.10 python3.10-dev python3.10-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 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kinetic/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libnghttp2-14 amd64 1.47.0-1 [69.0 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpipeline1 amd64 1.5.6-1 [23.1 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpsl5 amd64 0.21.0-1.2build2 [58.4 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 man-db amd64 2.10.2-1 [1187 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsigsegv2 amd64 2.13-1ubuntu3 [14.6 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 m4 amd64 1.4.18-5ubuntu2 [199 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 autoconf all 2.71-2 [338 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 automake all 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1.10.7+repack-4ubuntu2 [90.9 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-hl-100 amd64 1.10.7+repack-4ubuntu2 [59.1 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.7+repack-4ubuntu2 [33.8 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.7+repack-4ubuntu2 [10.6 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-turbo8 amd64 2.1.2-0ubuntu1 [134 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-turbo8-dev amd64 2.1.2-0ubuntu1 [257 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg8 amd64 8c-2ubuntu10 [2264 B] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg8-dev amd64 8c-2ubuntu10 [1476 B] Get:87 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-dev amd64 8c-2ubuntu10 [1472 B] Get:88 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libaec-dev amd64 1.0.6-1 [17.9 kB] 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Setting up libdw1:amd64 (0.187-1) ... Setting up libjpeg-turbo8-dev:amd64 (2.1.2-0ubuntu1) ... Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up libaec-dev:amd64 (1.0.6-1) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:amd64 (3.10.5-1) ... Setting up libjs-sphinxdoc (4.5.0-4) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:amd64 (7.83.1-2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu10) ... Setting up libpython3-stdlib:amd64 (3.10.4-0ubuntu2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.10:amd64 (3.10.5-1) ... Setting up python3.10 (3.10.5-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu10) ... Setting up python3 (3.10.4-0ubuntu2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libcurl4-openssl-dev:amd64 (7.83.1-2) ... Setting up cython3 (0.29.30-1ubuntu1) ... Setting up libpython3.10-dev:amd64 (3.10.5-1) ... Setting up python3.10-dev (3.10.5-1) ... Setting up libhdf5-103-1:amd64 (1.10.7+repack-4ubuntu2) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.7+repack-4ubuntu2) ... Setting up python3-lib2to3 (3.10.5-1ubuntu2) ... Setting up libhdf5-hl-100:amd64 (1.10.7+repack-4ubuntu2) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.5-1ubuntu2) ... Setting up dh-python (5.20220403) ... 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Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-4ubuntu1 linux-libc-dev_5.15.0-35.36+22.10.1 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38.50.20220615-4ubuntu1 binutils-common_2.38.50.20220615-4ubuntu1 binutils-x86-64-linux-gnu_2.38.50.20220615-4ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-3ubuntu1 cython3_0.29.30-1ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.7.1ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.8ubuntu1 dpkg-dev_1.21.8ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-3ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-3ubuntu1 gcc-11-base_11.3.0-3ubuntu1 gcc-12-base_12.1.0-4ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu2 gpg-agent_2.2.27-3ubuntu2 gpgconf_2.2.27-3ubuntu2 gpgv_2.2.27-3ubuntu2 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hdf5-helpers_1.10.7+repack-4ubuntu2 hostname_3.23ubuntu2 init_1.63 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapparmor1_3.0.4-2ubuntu3 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-3ubuntu1 libassuan0_2.5.5-3 libatomic1_12.1.0-4ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libbinutils_2.38.50.20220615-4ubuntu1 libblkid1_2.38-4ubuntu1 libboost-python-dev_1.74.0.3ubuntu7 libboost-python1.74-dev_1.74.0-14ubuntu4 libboost-python1.74.0_1.74.0-14ubuntu4 libboost1.74-dev_1.74.0-14ubuntu4 libbrotli1_1.0.9-2build6 libbz2-1.0_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcap-ng0_0.8.3-1 libcap2_1:2.44-1build3 libcc1-0_12.1.0-4ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38.50.20220615-4ubuntu1 libctf0_2.38.50.20220615-4ubuntu1 libcurl4_7.83.1-2 libcurl4-openssl-dev_7.83.1-2 libdb5.3_5.3.28+dfsg1-0.9 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.7.1ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.8ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-3ubuntu1 libgcc-s1_12.1.0-4ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12.1.0-4ubuntu1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.6-2ubuntu1 libgomp1_12.1.0-4ubuntu1 libgpg-error0_1.45-2 libgprofng0_2.38.50.20220615-4ubuntu1 libgssapi-krb5-2_1.19.2-2 libhdf5-103-1_1.10.7+repack-4ubuntu2 libhdf5-cpp-103-1_1.10.7+repack-4ubuntu2 libhdf5-dev_1.10.7+repack-4ubuntu2 libhdf5-fortran-102_1.10.7+repack-4ubuntu2 libhdf5-hl-100_1.10.7+repack-4ubuntu2 libhdf5-hl-cpp-100_1.10.7+repack-4ubuntu2 libhdf5-hl-fortran-100_1.10.7+repack-4ubuntu2 libhogweed6_3.7.3-1build2 libicu71_71.1-3 libidn2-0_2.3.2-2build1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.24-2build1 libitm1_12.1.0-4ubuntu1 libjpeg-dev_8c-2ubuntu10 libjpeg-turbo8_2.1.2-0ubuntu1 libjpeg-turbo8-dev_2.1.2-0ubuntu1 libjpeg8_8c-2ubuntu10 libjpeg8-dev_8c-2ubuntu10 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc_4.5.0-4 libjs-underscore_1.13.3~dfsg+~1.11.4-1 libjson-c5_0.16-1 libk5crypto3_1.19.2-2 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkrb5-3_1.19.2-2 libkrb5support0_1.19.2-2 libldap-2.5-0_2.5.12+dfsg-2ubuntu1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.1.0-4ubuntu1 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpdec3_2.5.1-2build2 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1build2 libnghttp2-14_1.47.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-3ubuntu1 libpipeline1_1.5.6-1 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libpsl5_0.21.0-1.2build2 libpython3-all-dev_3.10.4-0ubuntu2 libpython3-dev_3.10.4-0ubuntu2 libpython3-stdlib_3.10.4-0ubuntu2 libpython3.10_3.10.5-1 libpython3.10-dev_3.10.5-1 libpython3.10-minimal_3.10.5-1 libpython3.10-stdlib_3.10.5-1 libquadmath0_12.1.0-4ubuntu1 libreadline8_8.1.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg-6ubuntu1 libsasl2-modules-db_2.1.28+dfsg-6ubuntu1 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.38.5-1 libss2_1.46.5-2ubuntu2 libssh-4_0.9.6-2build1 libssl-dev_3.0.4-1ubuntu1 libssl3_3.0.4-1ubuntu1 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-4ubuntu1 libsub-override-perl_0.09-3 libsystemd0_249.11-0ubuntu4 libsz2_1.0.6-1 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2build1 libtirpc-dev_1.3.2-2build1 libtirpc3_1.3.2-2build1 libtool_2.4.7-4 libtsan0_11.3.0-3ubuntu1 libubsan1_12.1.0-4ubuntu1 libuchardet0_0.0.7-1build2 libudev1_249.11-0ubuntu4 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.15.0-35.36+22.10.1 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_27 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.4-1ubuntu1 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-3ubuntu1 perl-base_5.34.0-3ubuntu1 perl-modules-5.34_5.34.0-3ubuntu1 pinentry-curses_1.2.0-1ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 python3_3.10.4-0ubuntu2 python3-all_3.10.4-0ubuntu2 python3-all-dev_3.10.4-0ubuntu2 python3-dev_3.10.4-0ubuntu2 python3-distutils_3.10.5-1ubuntu2 python3-lib2to3_3.10.5-1ubuntu2 python3-minimal_3.10.4-0ubuntu2 python3-pkg-resources_59.6.0-1.2 python3-setuptools_59.6.0-1.2 python3.10_3.10.5-1 python3.10-dev_3.10.5-1 python3.10-minimal_3.10.5-1 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_249.11-0ubuntu4 systemd-sysv_249.11-0ubuntu4 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 zlib1g-dev_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fast5 Binary: fast5, libfast5-dev, python3-fast5 Architecture: any all Version: 0.6.5-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/mateidavid/fast5 Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/fast5 Vcs-Git: https://salsa.debian.org/med-team/fast5.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper Package-List: fast5 deb science optional arch=all libfast5-dev deb libdevel optional arch=all python3-fast5 deb python optional arch=any Checksums-Sha1: 21d1ddf5cb3cd0d426dab82480bfc0ef6a52d21e 93639 fast5_0.6.5.orig.tar.gz b90197ca7031ef7ea467a5393ae2acf00288bcbd 5540 fast5_0.6.5-7.debian.tar.xz Checksums-Sha256: f8b1ce2c07adb56b4f13337ef008e124255f86cdb7e74e4233afa8dca878ee1a 93639 fast5_0.6.5.orig.tar.gz 6e185bce0f949314730c845bcb6379d50207767a5668977c4ca147baab53eaf4 5540 fast5_0.6.5-7.debian.tar.xz Files: 8fa84e045b0b775239413248f7bf5e83 93639 fast5_0.6.5.orig.tar.gz 1fe998234bedbf8ee1ed33936ea7ab7c 5540 fast5_0.6.5-7.debian.tar.xz Dgit: f7489d191658689508236b1064eb0f624bb88ca3 debian archive/debian/0.6.5-7 https://git.dgit.debian.org/fast5 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmK4V6AUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqMbxAAoaq59fJ0D33wS9r1+gqlRlunuYBn dr87FThPk9Pzx9GJpDdM/DvavuQBzimWJG/kgoZQ+UJEsiwAKs/Fat8me1tu6qiE IiuL8W1S1fORaIUpDpDSEPpjvsqzqnf3OszKp21avPWhHpKgO1PNPAJcqFMfer7V Zg8Qlt2nokGL/TLBNcHptEo0868127XZToSUhBqoXKCdI4XFCLNiqAEaMiJTYj9H 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applying rpath.patch dpkg-source: info: applying gcc-12.patch dpkg-source: info: applying build-flags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24114235 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24114235 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24114235 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.5-7 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp debian/rules clean dh clean --with python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' cd src && /usr/bin/make clean make[2]: Entering directory '/<>/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/<>/src' dh_auto_clean I: pybuild base:239: python3.10 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/<>/.pybuild/cpython3_3.10_fast5/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules binary dh binary --with python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=python dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:239: python3.10 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config dh_auto_build -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:239: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/fast5 x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.10 -c fast5/fast5.cpp -o build/temp.linux-x86_64-3.10/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/fast5/fast5.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/.pybuild/cpython3_3.10_fast5/build/fast5.cpython-310-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.10 copying and adjusting bin/f5ls -> build/scripts-3.10 copying and adjusting bin/f5pack -> build/scripts-3.10 changing mode of build/scripts-3.10/f5ls from 644 to 755 changing mode of build/scripts-3.10/f5pack from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/<>' cd src && /usr/bin/make make[2]: Entering directory '/<>/src' g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5ls f5ls.cpp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5ls-full f5ls-full.cpp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /<>/src/../include -o hdf5-mod hdf5-mod.cpp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -Wdate-time -D_FORTIFY_SOURCE=2 -isystem /usr/include/hdf5/serial -I /<>/src/../include -o f5-mod f5-mod.cpp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:239: /usr/bin/python3 setup.py install --root /<>/debian/python3-fast5 running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_ext running build_scripts running install_lib creating /<>/debian/python3-fast5 creating /<>/debian/python3-fast5/usr creating /<>/debian/python3-fast5/usr/lib creating /<>/debian/python3-fast5/usr/lib/python3.10 creating /<>/debian/python3-fast5/usr/lib/python3.10/dist-packages copying /<>/.pybuild/cpython3_3.10_fast5/build/fast5.cpython-310-x86_64-linux-gnu.so -> /<>/debian/python3-fast5/usr/lib/python3.10/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt writing manifest file 'fast5.egg-info/SOURCES.txt' reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /<>/debian/python3-fast5/usr/lib/python3.10/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-fast5/usr/bin copying build/scripts-3.10/f5pack -> /<>/debian/python3-fast5/usr/bin copying build/scripts-3.10/f5ls -> /<>/debian/python3-fast5/usr/bin changing mode of /<>/debian/python3-fast5/usr/bin/f5pack to 755 changing mode of /<>/debian/python3-fast5/usr/bin/f5ls to 755 debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ make[1]: Leaving directory '/<>' dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -O--buildsystem=pybuild -O--sourcedirectory=python dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=python dh_installsystemduser -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: Entering directory '/<>' cd src && /usr/bin/make clean make[2]: Entering directory '/<>/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/<>/src' dh_compress -X .cpp -X .hpp make[1]: Leaving directory '/<>' dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -O--buildsystem=pybuild -O--sourcedirectory=python dh_dwz -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python 218facf75dcde9c27b3e8402b0ddfe34f23984b1 dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=python INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-fast5-dbgsym (in debian/.debhelper/python3-fast5/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python3-fast5 (in debian/python3-fast5); do_strip: , oemstrip: pkgstriptranslations: processing libfast5-dev (in debian/libfast5-dev); do_strip: , oemstrip: pkgstriptranslations: processing fast5 (in debian/fast5); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libfast5-dev/DEBIAN/control, package libfast5-dev, directory debian/libfast5-dev INFO: pkgstripfiles: waiting for lock (libfast5-dev) ... pkgstripfiles: processing control file: debian/fast5/DEBIAN/control, package fast5, directory debian/fast5 Searching for duplicated docs in dependency python3-fast5... symlinking changelog.Debian.gz in fast5 to file in python3-fast5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package fast5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fast5' in '../fast5_0.6.5-7_all.deb'. pkgstripfiles: Truncating usr/share/doc/libfast5-dev/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libfast5-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libfast5-dev' in '../libfast5-dev_0.6.5-7_all.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-fast5/dbgsym-root/DEBIAN/control, package python3-fast5-dbgsym, directory debian/.debhelper/python3-fast5/dbgsym-root dpkg-deb: building package 'python3-fast5-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-fast5/python3-fast5-dbgsym_0.6.5-7_amd64.deb'. Renaming python3-fast5-dbgsym_0.6.5-7_amd64.deb to python3-fast5-dbgsym_0.6.5-7_amd64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-fast5/DEBIAN/control, package python3-fast5, directory debian/python3-fast5 pkgstripfiles: Truncating usr/share/doc/python3-fast5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-fast5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../fast5_0.6.5-7_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../fast5_0.6.5-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-26T17:15:44Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fast5_0.6.5-7_amd64.changes: ---------------------------- Format: 1.8 Date: Sun, 26 Jun 2022 14:41:32 +0200 Source: fast5 Binary: fast5 libfast5-dev python3-fast5 Built-For-Profiles: noudeb Architecture: all amd64 Version: 0.6.5-7 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: fast5 - utilities for manipulating Oxford Nanopore Fast5 files libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3 Closes: 1012919 Changes: fast5 (0.6.5-7) unstable; urgency=medium . * d/control: add myself to uploaders. * Add gcc-12.patch: fix ftbfs with gcc-12. (Closes: #1012919) * Standards-Version: 4.6.1 (routine-update) * Add build-flags.patch: propagate standard debian build flags. * d/rules: remove redundant build flag setting. Checksums-Sha1: 26cbc56e0922690398e01e9d2a14d05a2dbe24ff 5804 fast5_0.6.5-7_all.deb b316b1dc9b6cc07f807d6a7b34f3436ab1ef2e66 8874 fast5_0.6.5-7_amd64.buildinfo 661d45086053509ef0a42728ce65637fd0c15188 50586 libfast5-dev_0.6.5-7_all.deb 375fb37d7d3601d316e41d5b4eef95d029f597e7 2673254 python3-fast5-dbgsym_0.6.5-7_amd64.ddeb 8cd5daef84b00a28cb25154afb78063c675e855b 235044 python3-fast5_0.6.5-7_amd64.deb Checksums-Sha256: 39655b2d92aba12e8e40af6dd97585ce092d574a93dfa7522d84905d413d44f9 5804 fast5_0.6.5-7_all.deb 3e2fde0da740b0a39e4dedd4cf873ec6f71f8b7953c6a23d76fc396a11659f57 8874 fast5_0.6.5-7_amd64.buildinfo d35d58e6ccbae9407a61860309774c18a1ba881dc767a0bb756c958c0ce8c210 50586 libfast5-dev_0.6.5-7_all.deb 0091d181aaf0f73b899a7f2fac945f004180e554b2ab91a9bc31016756b3365b 2673254 python3-fast5-dbgsym_0.6.5-7_amd64.ddeb 2913ce30073dbe14c206eb7b9f30ec2d573ba8df851beefc04a4cea1e30adb30 235044 python3-fast5_0.6.5-7_amd64.deb Files: 461ee61c732ff182e5ea93399058b752 5804 science optional fast5_0.6.5-7_all.deb 7b067716d87883395344039cd4bd8e09 8874 science optional fast5_0.6.5-7_amd64.buildinfo 56e331bb18da419780e3601889cb54f7 50586 libdevel optional libfast5-dev_0.6.5-7_all.deb 300a1e20fadb798ed189c93496f0564d 2673254 debug optional python3-fast5-dbgsym_0.6.5-7_amd64.ddeb 34d0d3ed7c1dd461cdfefdfeeeba69f0 235044 python optional python3-fast5_0.6.5-7_amd64.deb /<>/fast5_0.6.5-7_amd64.changes.new could not be renamed to /<>/fast5_0.6.5-7_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fast5 Binary: fast5 libfast5-dev python3-fast5 python3-fast5-dbgsym Architecture: all amd64 Version: 0.6.5-7 Checksums-Md5: 461ee61c732ff182e5ea93399058b752 5804 fast5_0.6.5-7_all.deb 56e331bb18da419780e3601889cb54f7 50586 libfast5-dev_0.6.5-7_all.deb 300a1e20fadb798ed189c93496f0564d 2673254 python3-fast5-dbgsym_0.6.5-7_amd64.ddeb 34d0d3ed7c1dd461cdfefdfeeeba69f0 235044 python3-fast5_0.6.5-7_amd64.deb Checksums-Sha1: 26cbc56e0922690398e01e9d2a14d05a2dbe24ff 5804 fast5_0.6.5-7_all.deb 661d45086053509ef0a42728ce65637fd0c15188 50586 libfast5-dev_0.6.5-7_all.deb 375fb37d7d3601d316e41d5b4eef95d029f597e7 2673254 python3-fast5-dbgsym_0.6.5-7_amd64.ddeb 8cd5daef84b00a28cb25154afb78063c675e855b 235044 python3-fast5_0.6.5-7_amd64.deb Checksums-Sha256: 39655b2d92aba12e8e40af6dd97585ce092d574a93dfa7522d84905d413d44f9 5804 fast5_0.6.5-7_all.deb d35d58e6ccbae9407a61860309774c18a1ba881dc767a0bb756c958c0ce8c210 50586 libfast5-dev_0.6.5-7_all.deb 0091d181aaf0f73b899a7f2fac945f004180e554b2ab91a9bc31016756b3365b 2673254 python3-fast5-dbgsym_0.6.5-7_amd64.ddeb 2913ce30073dbe14c206eb7b9f30ec2d573ba8df851beefc04a4cea1e30adb30 235044 python3-fast5_0.6.5-7_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Sun, 26 Jun 2022 17:15:43 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), cython3 (= 0.29.30-1ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-python (= 5.20220403), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-4ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hdf5-helpers (= 1.10.7+repack-4ubuntu2), hostname (= 3.23ubuntu2), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-4ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.50.20220615-4ubuntu1), libblkid1 (= 2.38-4ubuntu1), libboost-python-dev (= 1.74.0.3ubuntu7), libboost-python1.74-dev (= 1.74.0-14ubuntu4), libboost-python1.74.0 (= 1.74.0-14ubuntu4), libboost1.74-dev (= 1.74.0-14ubuntu4), libbrotli1 (= 1.0.9-2build6), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-4ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libcurl4 (= 7.83.1-2), libcurl4-openssl-dev (= 7.83.1-2), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libexpat1-dev (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-4ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12.1.0-4ubuntu1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-4ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgssapi-krb5-2 (= 1.19.2-2), libhdf5-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-cpp-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-dev (= 1.10.7+repack-4ubuntu2), libhdf5-fortran-102 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-cpp-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-fortran-100 (= 1.10.7+repack-4ubuntu2), libhogweed6 (= 3.7.3-1build2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-4ubuntu1), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-sphinxdoc (= 4.5.0-4), libjs-underscore (= 1.13.3~dfsg+~1.11.4-1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblsan0 (= 12.1.0-4ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpsl5 (= 0.21.0-1.2build2), libpython3-all-dev (= 3.10.4-0ubuntu2), libpython3-dev (= 3.10.4-0ubuntu2), libpython3-stdlib (= 3.10.4-0ubuntu2), libpython3.10 (= 3.10.5-1), libpython3.10-dev (= 3.10.5-1), libpython3.10-minimal (= 3.10.5-1), libpython3.10-stdlib (= 3.10.5-1), libquadmath0 (= 12.1.0-4ubuntu1), libreadline8 (= 8.1.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.38.5-1), libssh-4 (= 0.9.6-2build1), libssl-dev (= 3.0.4-1ubuntu1), libssl3 (= 3.0.4-1ubuntu1), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-4ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 249.11-0ubuntu4), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4build1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-4ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-35.36+22.10.1), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.4-0ubuntu2), python3-all (= 3.10.4-0ubuntu2), python3-all-dev (= 3.10.4-0ubuntu2), python3-dev (= 3.10.4-0ubuntu2), python3-distutils (= 3.10.5-1ubuntu2), python3-lib2to3 (= 3.10.5-1ubuntu2), python3-minimal (= 3.10.4-0ubuntu2), python3-pkg-resources (= 59.6.0-1.2), python3-setuptools (= 59.6.0-1.2), python3.10 (= 3.10.5-1), python3.10-dev (= 3.10.5-1), python3.10-minimal (= 3.10.5-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1656247292" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fast5_0.6.5-7_all.deb --------------------- new Debian package, version 2.0. size 5804 bytes: control archive=669 bytes. 700 bytes, 15 lines control 160 bytes, 3 lines md5sums Package: fast5 Version: 0.6.5-7 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 31 Depends: python3:any, python3-fast5 (>= 0.6.5-7) Section: science Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: utilities for manipulating Oxford Nanopore Fast5 files The data produced by Oxford Nanopore Technologies (ONT) sequencers are stored in fast5 files, based on the HDF5 file format, with one file per sequenced read. This package provides utilities to inspect these files, as well as to pack them for more effficient use. drwxr-xr-x root/root 0 2022-06-26 12:41 ./ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/bin/ -rwxr-xr-x root/root 10187 2022-06-26 12:41 ./usr/bin/f5ls -rwxr-xr-x root/root 9131 2022-06-26 12:41 ./usr/bin/f5pack drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/fast5/ lrwxrwxrwx root/root 0 2022-06-26 12:41 ./usr/share/doc/fast5/changelog.Debian.gz -> ../python3-fast5/changelog.Debian.gz -rw-r--r-- root/root 1440 2022-06-26 12:41 ./usr/share/doc/fast5/copyright libfast5-dev_0.6.5-7_all.deb ---------------------------- new Debian package, version 2.0. size 50586 bytes: control archive=1348 bytes. 634 bytes, 16 lines control 2068 bytes, 27 lines md5sums Package: libfast5-dev Source: fast5 Version: 0.6.5-7 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 349 Depends: libhdf5-dev | libhdf5-mpich-dev | libhdf5-openmpi-dev Section: libdevel Priority: optional Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- headers A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the header files for development with fast5. drwxr-xr-x root/root 0 2022-06-26 12:41 ./ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/ drwxr-xr-x root/root 0 2018-02-07 14:57 ./usr/include/ -rw-r--r-- root/root 88245 2018-02-07 14:57 ./usr/include/fast5.hpp drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/include/fast5/ -rw-r--r-- root/root 4159 2018-02-07 14:57 ./usr/include/fast5/Bit_Packer.hpp -rw-r--r-- root/root 11089 2018-02-07 14:57 ./usr/include/fast5/Huffman_Packer.hpp -rw-r--r-- root/root 2323 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ed_len_1.inl -rw-r--r-- root/root 43 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ed_skip_1.inl -rw-r--r-- root/root 68 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ev_move_1.inl -rw-r--r-- root/root 47 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_ev_rel_skip_1.inl -rw-r--r-- root/root 82 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_fq_bp_1.inl -rw-r--r-- root/root 518 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_fq_qv_1.inl -rw-r--r-- root/root 4115 2018-02-07 14:57 ./usr/include/fast5/cwmap.fast5_rw_1.inl -rw-r--r-- root/root 148 2018-02-07 14:57 ./usr/include/fast5/fast5_version.hpp -rw-r--r-- root/root 91167 2022-06-26 12:41 ./usr/include/fast5/hdf5_tools.hpp -rw-r--r-- root/root 12829 2018-02-07 14:57 ./usr/include/fast5/logger.hpp drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/libfast5-dev/ -rw-r--r-- root/root 1771 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/README.org -rw-r--r-- root/root 1471 2022-06-26 12:41 ./usr/share/doc/libfast5-dev/changelog.Debian.gz -rw-r--r-- root/root 1440 2022-06-26 12:41 ./usr/share/doc/libfast5-dev/copyright drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/libfast5-dev/examples/ -rw-r--r-- root/root 39403 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/File_Packer.hpp -rw-r--r-- root/root 2187 2022-06-26 12:41 ./usr/share/doc/libfast5-dev/examples/Makefile -rw-r--r-- root/root 3382 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5-mod.cpp -rw-r--r-- root/root 11160 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5dump.cpp -rw-r--r-- root/root 13395 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5ls-full.cpp -rw-r--r-- root/root 8614 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5ls.cpp -rw-r--r-- root/root 9444 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/f5pack.cpp -rw-r--r-- root/root 11373 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/hdf5-mod.cpp -rw-r--r-- root/root 1231 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/huffman-decode.cpp -rw-r--r-- root/root 962 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/huffman-encode.cpp -rw-r--r-- root/root 7863 2018-02-07 14:57 ./usr/share/doc/libfast5-dev/examples/tmp.cpp python3-fast5_0.6.5-7_amd64.deb ------------------------------- new Debian package, version 2.0. size 235044 bytes: control archive=834 bytes. 687 bytes, 17 lines control 555 bytes, 6 lines md5sums Package: python3-fast5 Source: fast5 Version: 0.6.5-7 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 734 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.3.1), libhdf5-103-1, libstdc++6 (>= 11), python3 (<< 3.11), python3 (>= 3.10~) Section: python Priority: optional Multi-Arch: same Homepage: https://github.com/mateidavid/fast5 Description: library for reading Oxford Nanopore Fast5 files -- Python 3 A lightweight C++11 library to read raw signal data from Oxford Nanopore's FAST5 files. . This package provides the Python 3 library drwxr-xr-x root/root 0 2022-06-26 12:41 ./ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/python3/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/ -rw-r--r-- root/root 267 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt -rw-r--r-- root/root 6 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/top_level.txt -rw-r--r-- root/root 732832 2022-06-26 12:41 ./usr/lib/python3/dist-packages/fast5.cpython-310-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-06-26 12:41 ./usr/share/doc/python3-fast5/ -rw-r--r-- root/root 1467 2022-06-26 12:41 ./usr/share/doc/python3-fast5/changelog.Debian.gz -rw-r--r-- root/root 1440 2022-06-26 12:41 ./usr/share/doc/python3-fast5/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 49236 Build-Time: 84 Distribution: kinetic-proposed Host Architecture: amd64 Install-Time: 11 Job: fast5_0.6.5-7.dsc Machine Architecture: amd64 Package: fast5 Package-Time: 95 Source-Version: 0.6.5-7 Space: 49236 Status: successful Version: 0.6.5-7 -------------------------------------------------------------------------------- Finished at 2022-06-26T17:15:44Z Build needed 00:01:35, 49236k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24114235 Scanning for processes to kill in build PACKAGEBUILD-24114235