RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-26 3.19.0-22-generic #22~14.04.1-Ubuntu SMP Wed Jun 17 10:03:13 UTC 2015 x86_64 Buildd toolchain package versions: launchpad-buildd_132 python-lpbuildd_132 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa4 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.4. Syncing the system clock with the buildd NTP service... 22 Jul 06:48:03 ntpdate[1641]: adjust time server 10.211.37.1 offset -0.158417 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-7712871', '/home/buildd/filecache-default/25035c2b40e1933ad74f2ee98654477d8de00169'] Unpacking chroot for build PACKAGEBUILD-7712871 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-7712871'] Mounting chroot for build PACKAGEBUILD-7712871 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-7712871', 'deb http://ftpmaster.internal/ubuntu wily main universe', 'deb http://ftpmaster.internal/ubuntu wily-security main universe', 'deb http://ftpmaster.internal/ubuntu wily-updates main universe', 'deb http://ftpmaster.internal/ubuntu wily-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-7712871 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-7712871', 'amd64'] Updating debian chroot for build PACKAGEBUILD-7712871 Ign http://archive-team.internal wily InRelease Ign http://ftpmaster.internal wily InRelease Ign http://archive-team.internal wily Release.gpg Ign http://ftpmaster.internal wily-security InRelease Hit http://archive-team.internal wily Release Ign http://ftpmaster.internal wily-updates InRelease Ign http://archive-team.internal wily/main amd64 Packages/DiffIndex Ign http://ftpmaster.internal wily-proposed InRelease Get:1 http://ftpmaster.internal wily Release.gpg [933 B] Get:2 http://ftpmaster.internal wily-security Release.gpg [933 B] Get:3 http://ftpmaster.internal wily-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal wily-proposed Release.gpg [933 B] Ign http://archive-team.internal wily/main Translation-en Hit http://archive-team.internal wily/main amd64 Packages Get:5 http://ftpmaster.internal wily Release [217 kB] Get:6 http://ftpmaster.internal wily-security Release [63.5 kB] Get:7 http://ftpmaster.internal wily-updates Release [63.5 kB] Get:8 http://ftpmaster.internal wily-proposed Release [217 kB] Get:9 http://ftpmaster.internal wily/main amd64 Packages [1428 kB] Get:10 http://ftpmaster.internal wily/universe amd64 Packages [6669 kB] Get:11 http://ftpmaster.internal wily/main Translation-en [833 kB] Get:12 http://ftpmaster.internal wily/universe Translation-en [4563 kB] Get:13 http://ftpmaster.internal wily-security/main amd64 Packages [28 B] Get:14 http://ftpmaster.internal wily-security/universe amd64 Packages [28 B] Get:15 http://ftpmaster.internal wily-security/main Translation-en [28 B] Get:16 http://ftpmaster.internal wily-security/universe Translation-en [28 B] Get:17 http://ftpmaster.internal wily-updates/main amd64 Packages [28 B] Get:18 http://ftpmaster.internal wily-updates/universe amd64 Packages [28 B] Get:19 http://ftpmaster.internal wily-updates/main Translation-en [28 B] Get:20 http://ftpmaster.internal wily-updates/universe Translation-en [28 B] Get:21 http://ftpmaster.internal wily-proposed/main amd64 Packages [72.4 kB] Get:22 http://ftpmaster.internal wily-proposed/universe amd64 Packages [244 kB] Get:23 http://ftpmaster.internal wily-proposed/main Translation-en [38.5 kB] Get:24 http://ftpmaster.internal wily-proposed/universe Translation-en [137 kB] Fetched 14.5 MB in 12s (1170 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bsdutils cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base libapparmor1 libasan1 libblkid1 libfdisk1 libgcc-4.9-dev libmount1 libsmartcols1 libstdc++-4.9-dev libuuid1 linux-libc-dev login mount passwd sed util-linux 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 35.0 MB of archives. After this operation, 182 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily/main bsdutils amd64 1:2.26.2-6ubuntu2 [49.8 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main login amd64 1:4.1.5.1-1.1ubuntu7 [303 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main util-linux amd64 2.26.2-6ubuntu2 [781 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main mount amd64 2.26.2-6ubuntu2 [123 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main sed amd64 4.2.2-6.1 [139 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily-proposed/main g++-4.9 amd64 4.9.3-2ubuntu1 [17.5 MB] Get:7 http://ftpmaster.internal/ubuntu/ wily-proposed/main gcc-4.9 amd64 4.9.3-2ubuntu1 [5667 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily-proposed/main cpp-4.9 amd64 4.9.3-2ubuntu1 [5030 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily-proposed/main libstdc++-4.9-dev amd64 4.9.3-2ubuntu1 [1127 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily-proposed/main libgcc-4.9-dev amd64 4.9.3-2ubuntu1 [2083 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily-proposed/main libasan1 amd64 4.9.3-2ubuntu1 [198 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily-proposed/main gcc-4.9-base amd64 4.9.3-2ubuntu1 [15.0 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily-proposed/main libapparmor1 amd64 2.9.2-0ubuntu2 [23.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main passwd amd64 1:4.1.5.1-1.1ubuntu7 [765 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libuuid1 amd64 2.26.2-6ubuntu2 [15.3 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libblkid1 amd64 2.26.2-6ubuntu2 [108 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libfdisk1 amd64 2.26.2-6ubuntu2 [137 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main libmount1 amd64 2.26.2-6ubuntu2 [116 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main libsmartcols1 amd64 2.26.2-6ubuntu2 [63.0 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily-proposed/main linux-libc-dev amd64 4.1.0-1.1 [800 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.0 MB in 1s (20.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.26.2-6ubuntu2_amd64.deb ... Unpacking bsdutils (1:2.26.2-6ubuntu2) over (1:2.26.2-6ubuntu1) ... Setting up bsdutils (1:2.26.2-6ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../login_1%3a4.1.5.1-1.1ubuntu7_amd64.deb ... Unpacking login (1:4.1.5.1-1.1ubuntu7) over (1:4.1.5.1-1.1ubuntu6) ... Setting up login (1:4.1.5.1-1.1ubuntu7) ... (Reading database ... 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Preparing to unpack .../libstdc++-4.9-dev_4.9.3-2ubuntu1_amd64.deb ... Unpacking libstdc++-4.9-dev:amd64 (4.9.3-2ubuntu1) over (4.9.2-22ubuntu1) ... Preparing to unpack .../libgcc-4.9-dev_4.9.3-2ubuntu1_amd64.deb ... Unpacking libgcc-4.9-dev:amd64 (4.9.3-2ubuntu1) over (4.9.2-22ubuntu1) ... Preparing to unpack .../libasan1_4.9.3-2ubuntu1_amd64.deb ... Unpacking libasan1:amd64 (4.9.3-2ubuntu1) over (4.9.2-22ubuntu1) ... Preparing to unpack .../gcc-4.9-base_4.9.3-2ubuntu1_amd64.deb ... Unpacking gcc-4.9-base:amd64 (4.9.3-2ubuntu1) over (4.9.2-22ubuntu1) ... Preparing to unpack .../libapparmor1_2.9.2-0ubuntu2_amd64.deb ... Unpacking libapparmor1:amd64 (2.9.2-0ubuntu2) over (2.9.2-0ubuntu1) ... Setting up libapparmor1:amd64 (2.9.2-0ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.1.5.1-1.1ubuntu7_amd64.deb ... Unpacking passwd (1:4.1.5.1-1.1ubuntu7) over (1:4.1.5.1-1.1ubuntu6) ... Setting up passwd (1:4.1.5.1-1.1ubuntu7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../libuuid1_2.26.2-6ubuntu2_amd64.deb ... Unpacking libuuid1:amd64 (2.26.2-6ubuntu2) over (2.26.2-6ubuntu1) ... Setting up libuuid1:amd64 (2.26.2-6ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../libblkid1_2.26.2-6ubuntu2_amd64.deb ... Unpacking libblkid1:amd64 (2.26.2-6ubuntu2) over (2.26.2-6ubuntu1) ... Setting up libblkid1:amd64 (2.26.2-6ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.26.2-6ubuntu2_amd64.deb ... Unpacking libfdisk1:amd64 (2.26.2-6ubuntu2) over (2.26.2-6ubuntu1) ... Setting up libfdisk1:amd64 (2.26.2-6ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../libmount1_2.26.2-6ubuntu2_amd64.deb ... Unpacking libmount1:amd64 (2.26.2-6ubuntu2) over (2.26.2-6ubuntu1) ... Setting up libmount1:amd64 (2.26.2-6ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.26.2-6ubuntu2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.26.2-6ubuntu2) over (2.26.2-6ubuntu1) ... Setting up libsmartcols1:amd64 (2.26.2-6ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.1.0-1.1_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.1.0-1.1) over (4.0.0-4.7) ... Setting up gcc-4.9-base:amd64 (4.9.3-2ubuntu1) ... Setting up cpp-4.9 (4.9.3-2ubuntu1) ... Setting up libasan1:amd64 (4.9.3-2ubuntu1) ... Setting up libgcc-4.9-dev:amd64 (4.9.3-2ubuntu1) ... Setting up gcc-4.9 (4.9.3-2ubuntu1) ... Setting up libstdc++-4.9-dev:amd64 (4.9.3-2ubuntu1) ... Setting up g++-4.9 (4.9.3-2ubuntu1) ... Setting up linux-libc-dev:amd64 (4.1.0-1.1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-7712871', 'amd64', 'wily-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=wily-proposed', '--purge=never', '--nolog', '-A', 'fastaq_1.5.0-1build1.dsc'] Initiating build PACKAGEBUILD-7712871 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-22-generic #22~14.04.1-Ubuntu SMP Wed Jun 17 10:03:13 UTC 2015 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-26.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ fastaq 1.5.0-1build1 (amd64) 22 Jul 2015 06:48 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: fastaq Version: 1.5.0-1build1 Source Version: 1.5.0-1build1 Distribution: wily-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/fastaq-siqDMn/fastaq-1.5.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/fastaq-siqDMn' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-7712871/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── fastaq_1.5.0-1build1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-BoCtVb/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/820 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11745 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), python3, python3-setuptools, python3-numpy, python3-nose, samtools, help2man Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), python3, python3-setuptools, python3-numpy, python3-nose, samtools, help2man dpkg-deb: building package `sbuild-build-depends-fastaq-dummy' in `/«BUILDDIR»/resolver-K_N0mL/apt_archive/sbuild-build-depends-fastaq-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install fastaq build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base help2man intltool-debian libasprintf0c2 libblas-common libblas3 libcroco3 libexpat1 libgfortran3 libglib2.0-0 libicu52 liblapack3 liblocale-gettext-perl libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libpython3.5-minimal libpython3.5-stdlib libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3-nose python3-numpy python3-pkg-resources python3-setuptools python3.4 python3.4-minimal python3.5 python3.5-minimal samtools Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-nose-doc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3.4-venv python3.4-doc binfmt-support python3.5-venv python3.5-doc python Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base help2man intltool-debian libasprintf0c2 libblas-common libblas3 libcroco3 libexpat1 libgfortran3 libglib2.0-0 libicu52 liblapack3 liblocale-gettext-perl libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libpython3.5-minimal libpython3.5-stdlib libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3-nose python3-numpy python3-pkg-resources python3-setuptools python3.4 python3.4-minimal python3.5 python3.5-minimal samtools sbuild-build-depends-fastaq-dummy 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 26.8 MB/26.8 MB of archives. After this operation, 113 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-fastaq-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ wily/main libexpat1 amd64 2.1.0-6ubuntu1 [70.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main liblocale-gettext-perl amd64 1.05-9 [18.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libmpdec2 amd64 2.4.1-1 [82.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libpython3.4-minimal amd64 3.4.3-7 [466 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main mime-support all 3.58ubuntu1 [31.6 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libpython3.4-stdlib amd64 3.4.3-7 [2060 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main python3.4-minimal amd64 3.4.3-7 [1362 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily-proposed/main python3-minimal amd64 3.4.3-4ubuntu1 [23.5 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main python3.4 amd64 3.4.3-7 [182 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily-proposed/main libpython3-stdlib amd64 3.4.3-4ubuntu1 [7014 B] Get:11 http://ftpmaster.internal/ubuntu/ wily-proposed/main dh-python all 2.20150719 [68.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily-proposed/main python3 amd64 3.4.3-4ubuntu1 [8810 B] Get:13 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0c2 amd64 0.19.4-1ubuntu1 [6668 B] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 amd64 1.4.0-1 [25.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libicu52 amd64 52.1-10 [6787 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libxml2 amd64 2.9.2+dfsg1-3 [714 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main groff-base amd64 1.22.3-1 [1183 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main man-db amd64 2.7.0.2-5 [863 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-0 amd64 2.45.3-1 [1109 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 amd64 0.6.8-3 [83.2 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main libgfortran3 amd64 5.1.1-14ubuntu1 [260 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main libpython3.5-minimal amd64 3.5.0~b3-1 [515 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main libpython3.5-stdlib amd64 3.5.0~b3-1 [2057 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main python3.5-minimal amd64 3.5.0~b3-1 [1439 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 amd64 1:5.22+15-2ubuntu1 [211 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main file amd64 1:5.22+15-2ubuntu1 [20.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main gettext-base amd64 0.19.4-1ubuntu1 [48.7 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main gettext amd64 0.19.4-1ubuntu1 [854 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily-proposed/main dh-apparmor all 2.9.2-0ubuntu2 [10.2 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150507ubuntu1 [737 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main help2man amd64 1.47.1 [109 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main libblas-common amd64 1.2.20110419-10 [3058 B] Get:37 http://ftpmaster.internal/ubuntu/ wily/main libblas3 amd64 1.2.20110419-10 [161 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily/main liblapack3 amd64 3.5.0-4 [1844 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily-proposed/main python3-pkg-resources all 18.0.1-1 [41.0 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main python3-nose all 1.3.6-1 [116 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main python3.5 amd64 3.5.0~b3-1 [142 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily-proposed/main python3-numpy amd64 1:1.8.2-1ubuntu2 [1709 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily-proposed/main python3-setuptools all 18.0.1-1 [89.1 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/universe samtools amd64 0.1.19-1ubuntu1 [562 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.8 MB in 2s (13.2 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11745 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6ubuntu1_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6ubuntu1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.05-9_amd64.deb ... Unpacking liblocale-gettext-perl (1.05-9) ... Selecting previously unselected package libmpdec2:amd64. 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Unpacking samtools (0.1.19-1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-fastaq-dummy. Preparing to unpack .../sbuild-build-depends-fastaq-dummy.deb ... Unpacking sbuild-build-depends-fastaq-dummy (0.invalid.0) ... Setting up liblocale-gettext-perl (1.05-9) ... Setting up libmpdec2:amd64 (2.4.1-1) ... Setting up mime-support (3.58ubuntu1) ... Setting up libpython3.4-stdlib:amd64 (3.4.3-7) ... Setting up python3.4 (3.4.3-7) ... Setting up libpython3-stdlib:amd64 (3.4.3-4ubuntu1) ... Setting up libasprintf0c2:amd64 (0.19.4-1ubuntu1) ... Setting up libpipeline1:amd64 (1.4.0-1) ... Setting up libicu52:amd64 (52.1-10) ... Setting up libxml2:amd64 (2.9.2+dfsg1-3) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Not building database; man-db/auto-update is not 'true'. Setting up libglib2.0-0:amd64 (2.45.3-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-3) ... Setting up libgfortran3:amd64 (5.1.1-14ubuntu1) ... Setting up libpython3.5-minimal:amd64 (3.5.0~b3-1) ... Setting up libpython3.5-stdlib:amd64 (3.5.0~b3-1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up python3.5-minimal (3.5.0~b3-1) ... Setting up libmagic1:amd64 (1:5.22+15-2ubuntu1) ... Setting up file (1:5.22+15-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu1) ... Setting up gettext (0.19.4-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up dh-apparmor (2.9.2-0ubuntu2) ... Setting up debhelper (9.20150507ubuntu1) ... Setting up help2man (1.47.1) ... Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python3.5 (3.5.0~b3-1) ... Setting up samtools (0.1.19-1ubuntu1) ... Setting up dh-python (2.20150719) ... Setting up python3 (3.4.3-4ubuntu1) ... Setting up python3-pkg-resources (18.0.1-1) ... Setting up python3-nose (1.3.6-1) ... Setting up python3-numpy (1:1.8.2-1ubuntu2) ... Setting up python3-setuptools (18.0.1-1) ... Setting up sbuild-build-depends-fastaq-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-22-generic amd64 (x86_64) Toolchain package versions: binutils_2.25-10ubuntu1 dpkg-dev_1.17.25ubuntu1 g++-4.9_4.9.3-2ubuntu1 gcc-4.9_4.9.3-2ubuntu1 libc6-dev_2.21-0ubuntu4 libstdc++-4.9-dev_4.9.3-2ubuntu1 libstdc++6_5.1.1-14ubuntu1 linux-libc-dev_4.1.0-1.1 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.9.10ubuntu1 apt-transport-https_1.0.9.10ubuntu1 base-files_7.2ubuntu10 base-passwd_3.5.38 bash_4.3-11ubuntu3 binutils_2.25-10ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu2 build-essential_11.6ubuntu6 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-3ubuntu1 cpp_4:4.9.2-2ubuntu2 cpp-4.9_4.9.3-2ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.55ubuntu2 debhelper_9.20150507ubuntu1 debianutils_4.5.1 dh-apparmor_2.9.2-0ubuntu2 dh-python_2.20150719 diffutils_1:3.3-1 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.17.25ubuntu1 dpkg-dev_1.17.25ubuntu1 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 fakeroot_1.20.2-1ubuntu1 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 g++_4:4.9.2-2ubuntu2 g++-4.9_4.9.3-2ubuntu1 gcc_4:4.9.2-2ubuntu2 gcc-4.9_4.9.3-2ubuntu1 gcc-4.9-base_4.9.3-2ubuntu1 gcc-5-base_5.1.1-14ubuntu1 gettext_0.19.4-1ubuntu1 gettext-base_0.19.4-1ubuntu1 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4ubuntu1 help2man_1.47.1 hostname_3.15ubuntu2 init_1.23ubuntu3 initscripts_2.88dsf-59.2ubuntu1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 libacl1_2.2.52-2 libapparmor1_2.9.2-0ubuntu2 libapt-pkg4.12_1.0.9.10ubuntu1 libasan1_4.9.3-2ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10 libasprintf0c2_0.19.4-1ubuntu1 libatomic1_5.1.1-14ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.3.7-1ubuntu2 libaudit1_1:2.3.7-1ubuntu2 libblas-common_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.26.2-6ubuntu2 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-9 libcap2-bin_1:2.24-9 libcilkrts5_5.1.1-14ubuntu1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.12-1ubuntu2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.1-1ubuntu7 libcurl3-gnutls_7.43.0-1ubuntu1 libdb5.3_5.3.28-9 libdbus-1-3_1.8.12-1ubuntu5 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.17.25ubuntu1 libexpat1_2.1.0-6ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu2 libffi6_3.2.1-3 libgcc-4.9-dev_4.9.3-2ubuntu1 libgcc1_1:5.1.1-14ubuntu1 libgcrypt20_1.6.3-2ubuntu1 libgdbm3_1.8.3-13.1 libgfortran3_5.1.1-14ubuntu1 libglib2.0-0_2.45.3-1 libgmp10_2:6.0.0+dfsg-7 libgnutls-deb0-28_3.3.15-5ubuntu1 libgomp1_5.1.1-14ubuntu1 libgpg-error0_1.19-2 libgssapi-krb5-2_1.13.2+dfsg-2 libgssapi3-heimdal_1.6~rc2+dfsg-10 libhcrypto4-heimdal_1.6~rc2+dfsg-10 libheimbase1-heimdal_1.6~rc2+dfsg-10 libheimntlm0-heimdal_1.6~rc2+dfsg-10 libhogweed4_3.1.1-3 libhx509-5-heimdal_1.6~rc2+dfsg-10 libicu52_52.1-10 libidn11_1.28-1ubuntu2 libisl13_0.14-2 libitm1_5.1.1-14ubuntu1 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5ubuntu1 libkmod2_18-3ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 liblapack3_3.5.0-4 libldap-2.4-2_2.4.40+dfsg-1ubuntu2 liblocale-gettext-perl_1.05-9 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.1.1-14ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.26.2-6ubuntu2 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-3 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7ubuntu1 libpipeline1_1.4.0-1 libpng12-0_1.2.51-0ubuntu3 libprocps3_1:3.3.9-1ubuntu8 libpython3-stdlib_3.4.3-4ubuntu1 libpython3.4-minimal_3.4.3-7 libpython3.4-stdlib_3.4.3-7 libpython3.5-minimal_3.5.0~b3-1 libpython3.5-stdlib_3.5.0~b3-1 libquadmath0_5.1.1-14ubuntu1 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libseccomp2_2.2.1-2ubuntu1 libselinux1_2.3-2 libsemanage-common_2.3-1build1 libsemanage1_2.3-1build1 libsepol1_2.3-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.26.2-6ubuntu2 libsqlite3-0_3.8.10.2-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1 libstdc++-4.9-dev_4.9.3-2ubuntu1 libstdc++6_5.1.1-14ubuntu1 libsystemd0_222-2ubuntu1 libtasn1-6_4.5-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libtsan0_5.1.1-14ubuntu1 libubsan0_5.1.1-14ubuntu1 libudev1_222-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu2 libwind0-heimdal_1.6~rc2+dfsg-10 libxml2_2.9.2+dfsg1-3 linux-libc-dev_4.1.0-1.1 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 make_4.0-8.1 man-db_2.7.0.2-5 mawk_1.3.3-17ubuntu2 mime-support_3.58ubuntu1 mount_2.26.2-6ubuntu2 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.69 pkgbinarymangler_121 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 python3_3.4.3-4ubuntu1 python3-minimal_3.4.3-4ubuntu1 python3-nose_1.3.6-1 python3-numpy_1:1.8.2-1ubuntu2 python3-pkg-resources_18.0.1-1 python3-setuptools_18.0.1-1 python3.4_3.4.3-7 python3.4-minimal_3.4.3-7 python3.5_3.5.0~b3-1 python3.5-minimal_3.5.0~b3-1 readline-common_6.3-8ubuntu1 samtools_0.1.19-1ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastaq-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_222-2ubuntu1 systemd-sysv_222-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu1 sysvinit-utils_2.88dsf-59.2ubuntu1 tar_1.27.1-2 tzdata_2015e-1 ubuntu-keyring_2012.05.19 udev_222-2ubuntu1 util-linux_2.26.2-6ubuntu2 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Wed Jul 22 06:46:50 2015 UTC using RSA key ID 21B2133D gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./fastaq_1.5.0-1build1.dsc dpkg-source: info: extracting fastaq in fastaq-1.5.0 dpkg-source: info: unpacking fastaq_1.5.0.orig.tar.gz dpkg-source: info: unpacking fastaq_1.5.0-1build1.debian.tar.xz dpkg-source: info: applying delay-import-statements-for-manpage-creation.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package fastaq dpkg-buildpackage: source version 1.5.0-1build1 dpkg-buildpackage: source distribution wily dpkg-source --before-build fastaq-1.5.0 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' rm -rf build .pybuild rm -rf /«PKGBUILDDIR»/debian/man make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean -O--buildsystem=pybuild rm -f debian/fastaq.substvars rm -f debian/fastaq.*.debhelper rm -rf debian/fastaq/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.4 --dir . I: pybuild base:170: python3.4 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_python3 D: dh_python3 dh_python3:149: version: 2.20150719 D: dh_python3 dh_python3:150: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:151: options: {'verbose': False, 'recommends': None, 'no_shebang_rewrite': False, 'clean_dbg_pkg': True, 'ignore_shebangs': False, 'requires': None, 'skip_private': False, 'vrange': None, 'regexpr': None, 'no_ext_rename': False, 'arch': None, 'suggests': None, 'package': None, 'no_package': None, 'depends': None, 'O': None, 'compile_all': False, 'shebang': None, 'guess_deps': True} D: dh_python3 dh_python3:152: args: [] D: dh_python3 dh_python3:154: supported Python versions: 3.4,3.5 (default=3.4) D: dh_python3 debhelper:98: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:171: processing package fastaq... D: dh_python3 fs:238: package fastaq details = {'egg-info': set(), 'public_vers': set(), 'nsp.txt': set(), 'shebangs': set(), 'ext_no_version': set(), 'compile': False, 'ext_vers': set(), 'requires.txt': set(), 'private_dirs': {}} D: dh_python3 depends:107: generating dependencies for package fastaq D: dh_python3 depends:242: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build -i python{version} -p 3.4 --dir . I: pybuild base:170: /usr/bin/python3 setup.py build running build running build_py creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq copying fastaq/intervals.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq copying fastaq/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq copying fastaq/sequences.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq copying fastaq/tasks.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq copying fastaq/utils.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq running build_scripts creating build creating build/scripts-3.4 copying and adjusting scripts/fastaq_expand_nucleotides -> build/scripts-3.4 copying and adjusting scripts/fastaq_merge -> build/scripts-3.4 copying and adjusting scripts/fastaq_insert_or_delete_bases -> build/scripts-3.4 copying and adjusting scripts/fastaq_get_seq_flanking_gaps -> build/scripts-3.4 copying and adjusting scripts/fastaq_fasta_to_fastq -> build/scripts-3.4 copying and adjusting scripts/fastaq_replace_bases -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_fasta -> build/scripts-3.4 copying and adjusting scripts/fastaq_interleave -> build/scripts-3.4 copying and adjusting scripts/fastaq_sequence_trim -> build/scripts-3.4 copying and adjusting scripts/fastaq_trim_Ns_at_end -> build/scripts-3.4 copying and adjusting scripts/fastaq_trim_ends -> build/scripts-3.4 copying and adjusting scripts/fastaq_chunker -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_fake_qual -> build/scripts-3.4 copying and adjusting scripts/fastaq_count_sequences -> build/scripts-3.4 copying and adjusting scripts/fastaq_split_by_base_count -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_tiling_bam -> build/scripts-3.4 copying and adjusting scripts/fastaq_get_ids -> build/scripts-3.4 copying and adjusting scripts/fastaq_long_read_simulate -> build/scripts-3.4 copying and adjusting scripts/fastaq_strip_illumina_suffix -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_quasr_primers_file -> build/scripts-3.4 copying and adjusting scripts/fastaq_make_random_contigs -> build/scripts-3.4 copying and adjusting scripts/fastaq_translate -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_perfect_reads -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_orfs_gff -> build/scripts-3.4 copying and adjusting scripts/fastaq_search_for_seq -> build/scripts-3.4 copying and adjusting scripts/fastaq_scaffolds_to_contigs -> build/scripts-3.4 copying and adjusting scripts/fastaq_reverse_complement -> build/scripts-3.4 copying and adjusting scripts/fastaq_enumerate_names -> build/scripts-3.4 copying and adjusting scripts/fastaq_filter -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_mira_xml -> build/scripts-3.4 copying and adjusting scripts/fastaq_deinterleave -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_random_subset -> build/scripts-3.4 copying and adjusting scripts/fastaq_to_unique_by_id -> build/scripts-3.4 copying and adjusting scripts/fastaq_extend_gaps -> build/scripts-3.4 copying and adjusting scripts/fastaq_capillary_to_pairs -> build/scripts-3.4 changing mode of build/scripts-3.4/fastaq_expand_nucleotides from 664 to 775 changing mode of build/scripts-3.4/fastaq_merge from 664 to 775 changing mode of build/scripts-3.4/fastaq_insert_or_delete_bases from 664 to 775 changing mode of build/scripts-3.4/fastaq_get_seq_flanking_gaps from 664 to 775 changing mode of build/scripts-3.4/fastaq_fasta_to_fastq from 664 to 775 changing mode of build/scripts-3.4/fastaq_replace_bases from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_fasta from 664 to 775 changing mode of build/scripts-3.4/fastaq_interleave from 664 to 775 changing mode of build/scripts-3.4/fastaq_sequence_trim from 664 to 775 changing mode of build/scripts-3.4/fastaq_trim_Ns_at_end from 664 to 775 changing mode of build/scripts-3.4/fastaq_trim_ends from 664 to 775 changing mode of build/scripts-3.4/fastaq_chunker from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_fake_qual from 664 to 775 changing mode of build/scripts-3.4/fastaq_count_sequences from 664 to 775 changing mode of build/scripts-3.4/fastaq_split_by_base_count from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_tiling_bam from 664 to 775 changing mode of build/scripts-3.4/fastaq_get_ids from 664 to 775 changing mode of build/scripts-3.4/fastaq_long_read_simulate from 664 to 775 changing mode of build/scripts-3.4/fastaq_strip_illumina_suffix from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_quasr_primers_file from 664 to 775 changing mode of build/scripts-3.4/fastaq_make_random_contigs from 664 to 775 changing mode of build/scripts-3.4/fastaq_translate from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_perfect_reads from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_orfs_gff from 664 to 775 changing mode of build/scripts-3.4/fastaq_search_for_seq from 664 to 775 changing mode of build/scripts-3.4/fastaq_scaffolds_to_contigs from 664 to 775 changing mode of build/scripts-3.4/fastaq_reverse_complement from 664 to 775 changing mode of build/scripts-3.4/fastaq_enumerate_names from 664 to 775 changing mode of build/scripts-3.4/fastaq_filter from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_mira_xml from 664 to 775 changing mode of build/scripts-3.4/fastaq_deinterleave from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_random_subset from 664 to 775 changing mode of build/scripts-3.4/fastaq_to_unique_by_id from 664 to 775 changing mode of build/scripts-3.4/fastaq_extend_gaps from 664 to 775 changing mode of build/scripts-3.4/fastaq_capillary_to_pairs from 664 to 775 mkdir /«PKGBUILDDIR»/doc cd /«PKGBUILDDIR»/doc make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test -O--buildsystem=pybuild pybuild --test -i python{version} -p 3.4 --dir . I: pybuild base:170: python3.4 setup.py test running test running egg_info creating Fastaq.egg-info writing Fastaq.egg-info/PKG-INFO writing dependency_links to Fastaq.egg-info/dependency_links.txt writing requirements to Fastaq.egg-info/requires.txt writing top-level names to Fastaq.egg-info/top_level.txt writing manifest file 'Fastaq.egg-info/SOURCES.txt' reading manifest file 'Fastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.sh' under directory 'fastaq/tests' writing manifest file 'Fastaq.egg-info/SOURCES.txt' running build_ext test_comparisons (intervals_test.TestIntervals) <, <=, == should work as expected ... ok test_contains (intervals_test.TestIntervals) Check that contains() works as expected ... ok test_init (intervals_test.TestIntervals) Throw error if try to construct genome_interval from a non-int, or end amino acid conversion works on Fasta ... ok test_trim_Ns (sequences_test.TestFasta) trim_Ns() should do the right trimming of a sequence ... ok test_get_next_from_file (sequences_test.TestFastq) get_next_from_file() should read seqs from OK, and raise error at badly formatted file ... ok test_init (sequences_test.TestFastq) __init__ should get the ID, sequence and quality correctly ... ok test_init_length_mismatch (sequences_test.TestFastq) __init__ should raise an error when length of seq and quality not the same ... ok test_revcomp (sequences_test.TestFastq) revcomp() should correctly reverse complement a sequence ... ok test_to_Fasta_and_qual (sequences_test.TestFastq) Check to_Fasta_and_qual converts quality scores correctly ... ok test_translate (sequences_test.TestFastq) Test nucleatide -> amino acid conversion works on Fasta ... ok test_trim (sequences_test.TestFastq) trim() should trim the right number of bases off start and end ... ok test_trim_Ns (sequences_test.TestFastq) trim_Ns() should do the right trimming of a fastq sequence ... ok test_file_reader_bad_format (sequences_test.TestFileReader) file_reader should die properly when not given fasta or fastq file ... ok test_file_reader_embl (sequences_test.TestFileReader) Test read embl file ... ok test_file_reader_fasta (sequences_test.TestFileReader) file_reader should iterate through a fasta file correctly ... ok test_file_reader_fastq (sequences_test.TestFileReader) file_reader should iterate through a fastq file correctly ... ok test_file_reader_gff (sequences_test.TestFileReader) Test read gff file ... ok test_file_reader_phylip (sequences_test.TestFileReader) Test read phylip file ... ok test_orfs_from_aa_seq (sequences_test.TestOther) Test _orfs_from_aa_seq() ... ok test_capillary_to_pairs (tasks_test.TestCapillaryToPairs) Check that capillary reads file converted to paired and unpaired ... ok test_count_sequences (tasks_test.TestCountSequences) Check that count_sequences does as expected ... ok test_deinterleave (tasks_test.TestDeinterleave) deinterleave should deal with an interleaved file correctly ... ok test_enumerate_names (tasks_test.TestEnumerateNames) Test enomereate_names works with all options ... ok test_expand_nucleoties (tasks_test.TestExpandNucleotides) Test expand_nucleotides ... /«PKGBUILDDIR»/fastaq/tests/tasks_test.py:81: ResourceWarning: unclosed file <_io.TextIOWrapper name='tmp.expanded' mode='w' encoding='UTF-8'> tasks.expand_nucleotides(fq_in, tmp) /«PKGBUILDDIR»/fastaq/tests/tasks_test.py:84: ResourceWarning: unclosed file <_io.TextIOWrapper name='tmp.expanded' mode='w' encoding='UTF-8'> tasks.expand_nucleotides(fa_in, tmp) ok test_extend_gaps (tasks_test.TestExtendGaps) Test that gap extension works ... ok test_fasta_to_fake_qual (tasks_test.TestFastaToFakeQual) Test fasta_to_fake_qual ... ok test_fasta_to_fastq (tasks_test.TestFastaToFastq) Check fasta_to_fastq converts files as expected ... ok test_fastaq_to_orfs_gff (tasks_test.TestFastaqToOrfsGFF) Test fastaq_to_orfs_gff ... ok test_fastaq_to_mira_xml (tasks_test.TestFastqToMiraXml) check that fastaq_to_mira_xml makes the correct xml file from a fastq file ... ok test_file_to_dict (tasks_test.TestFileToDict) check file_to_dict fills dictionary correctly ... ok test_ids_from_file_filter (tasks_test.TestFilter) Test that can extract reads from a file of read names ... ok test_invert_filter (tasks_test.TestFilter) Test that inverting filtering works ... ok test_length_filter (tasks_test.TestFilter) Check that filtering by length works as expected ... ok test_regex_filter (tasks_test.TestFilter) Check that filtering by name regex works as expected ... ok test_get_ids (tasks_test.TestGetIds) Check that IDs extracted correctly from fasta/q file ... ok test_get_seqs_flanking_gaps (tasks_test.TestGetSeqsFlankingGaps) ... ok test_interleave (tasks_test.TestInterleave) Check that interleave works as expected ... ok test_lengths_from_fai (tasks_test.TestLengthsFromFai) Check lengths_from_fai gets the length of each seq OK ... ok test_tiling_reads (tasks_test.TestMakeLongReads) ... ok test_make_random_contigs (tasks_test.TestMakeRandomContigs) Test make_random_contigs() ... ok test_merge_to_one_seq_fa (tasks_test.TestMergeToOneSeq) Test merge_to_one_seq with fasta ... ok test_merge_to_one_seq_fq (tasks_test.TestMergeToOneSeq) Test merge_to_one_seq with fastq ... ok test_sequences_replace_bases (tasks_test.TestReplaceBases) Check that fasta file gets all bases replaced OK ... ok test_reverse_complement (tasks_test.TestReverseComplement) reverse_complement should correctly reverse complement each seq in a file ... ok test_scaffolds_to_contigs (tasks_test.TestScaffoldsToContigs) Test scaffolds_to_contigs ... ok test_scaffolds_to_contigs_number_contigs (tasks_test.TestScaffoldsToContigs) Test scaffolds_to_contigs with contig numbering ... ok test_search_for_seq (tasks_test.TestSearchForSeq) Test that sequence search finds all hits ... ok test_sequence_trim (tasks_test.TestSequenceTrim) Test sequence_trim ... ok test_split_by_base_count (tasks_test.TestSplit) Check that fasta/q files get split by base count correctly ... ok test_split_by_fixed_size (tasks_test.TestSplit) Test fasta/q file split by fixed size ... /«PKGBUILDDIR»/fastaq/tests/tasks_test.py:391: ResourceWarning: unclosed file <_io.TextIOWrapper name='tmp.sequences_test_split.coords' mode='w' encoding='UTF-8'> tasks.split_by_fixed_size(infile, outprefix, 4, 1) ok test_split_by_fixed_size_exclude_Ns (tasks_test.TestSplit) ... /«PKGBUILDDIR»/fastaq/tests/tasks_test.py:406: ResourceWarning: unclosed file <_io.TextIOWrapper name='tmp.sequences_test_split.coords' mode='w' encoding='UTF-8'> tasks.split_by_fixed_size(infile, outprefix, 4, 1, skip_if_all_Ns=True) ok test_strip_illumina_suffix (tasks_test.TestStripIlluminaSuffix) Check illumina suffixes stripped correctly off read names ... ok test_to_fasta (tasks_test.TestToFasta) Test to_fasta ... ok test_to_fasta_union (tasks_test.TestToFastaUnion) Test to_fasta_union ... ok test_to_quasr_primers (tasks_test.TestToQuasrPrimers) Check that fasta file gets converted to QUASR sequence file ... ok test_to_unique_by_id (tasks_test.TestToUniqueByID) Test to_unique_by_id() ... ok test_translate (tasks_test.TestTranslate) Test translate works in each frame ... ok test_trim (tasks_test.TestTrim) trim should correctly trim each seq in a file ... ok test_trim_Ns_at_end (tasks_test.TestTrim) Test Ns at ends of sequences trimmed OK ... ok test_file_transpose (utils_test.TestUtils) Test that file_transpose() does what it should ... ok test_raise_exception (utils_test.TestUtils) open_file_write() and open_file_read() should raise an exception when can't do the opening ... gzip: this_file_is_not_here_so_throw_error.gz: No such file or directory gzip: /«PKGBUILDDIR»/fastaq/tests/data/utils_test_not_really_zipped.gz: not in gzip format ok test_system_call (utils_test.TestUtils) Test that system call appears to work and die as it should ... /bin/sh: 1: thisisveryunlikelytoebarealcommandandshouldthrowerror: not found ok test_write_and_read (utils_test.TestUtils) open_file_write() and open_file_read() should do the right thing depending gzipped or not ... ok ---------------------------------------------------------------------- Ran 98 tests in 0.557s OK fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f debian/fastaq.substvars rm -f debian/fastaq.*.debhelper rm -rf debian/fastaq/ dh_auto_install -O--buildsystem=pybuild install -d debian/fastaq pybuild --install -i python{version} -p 3.4 --dir . --dest-dir /«PKGBUILDDIR»/debian/fastaq I: pybuild base:170: /usr/bin/python3 setup.py install --root /«PKGBUILDDIR»/debian/fastaq running install running build running build_py running build_scripts running install_lib creating /«PKGBUILDDIR»/debian/fastaq/usr creating /«PKGBUILDDIR»/debian/fastaq/usr/lib creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4 creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq/intervals.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq/__init__.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq/sequences.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq/tasks.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.4/build/fastaq/utils.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq/intervals.py to intervals.cpython-34.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq/__init__.py to __init__.cpython-34.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq/sequences.py to sequences.cpython-34.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq/tasks.py to tasks.cpython-34.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/fastaq/utils.py to utils.cpython-34.pyc running install_egg_info running egg_info writing requirements to Fastaq.egg-info/requires.txt writing dependency_links to Fastaq.egg-info/dependency_links.txt writing Fastaq.egg-info/PKG-INFO writing top-level names to Fastaq.egg-info/top_level.txt reading manifest file 'Fastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.sh' under directory 'fastaq/tests' writing manifest file 'Fastaq.egg-info/SOURCES.txt' Copying Fastaq.egg-info to /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.4/dist-packages/Fastaq-1.5.0.egg-info running install_scripts creating /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_expand_nucleotides -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_merge -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_insert_or_delete_bases -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_get_seq_flanking_gaps -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_fasta_to_fastq -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_replace_bases -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_fasta -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_interleave -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_sequence_trim -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_trim_Ns_at_end -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_trim_ends -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_chunker -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_fake_qual -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_count_sequences -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_split_by_base_count -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_tiling_bam -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_get_ids -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_long_read_simulate -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_strip_illumina_suffix -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_quasr_primers_file -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_make_random_contigs -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_translate -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_perfect_reads -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_orfs_gff -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_search_for_seq -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_scaffolds_to_contigs -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_reverse_complement -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_enumerate_names -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_filter -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_mira_xml -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_deinterleave -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_random_subset -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_to_unique_by_id -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_extend_gaps -> /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.4/fastaq_capillary_to_pairs -> /«PKGBUILDDIR»/debian/fastaq/usr/bin changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_expand_nucleotides to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_merge to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_insert_or_delete_bases to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_get_seq_flanking_gaps to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_fasta_to_fastq to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_replace_bases to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_fasta to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_interleave to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_sequence_trim to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_trim_Ns_at_end to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_trim_ends to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_chunker to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_fake_qual to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_count_sequences to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_split_by_base_count to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_tiling_bam to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_get_ids to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_long_read_simulate to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_strip_illumina_suffix to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_quasr_primers_file to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_make_random_contigs to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_translate to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_perfect_reads to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_orfs_gff to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_search_for_seq to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_scaffolds_to_contigs to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_reverse_complement to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_enumerate_names to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_filter to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_mira_xml to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_deinterleave to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_random_subset to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_to_unique_by_id to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_extend_gaps to 775 changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq_capillary_to_pairs to 775 dh_installdocs -O--buildsystem=pybuild install -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/fastaq/usr/share/doc/fastaq/changelog.Debian debian/rules override_dh_installman make[1]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/man /«PKGBUILDDIR»/debian/usage_to_man Creating manpages Manpage creation complete dh_installman -- install -d debian/fastaq/usr/share/man/man1/ install -p -m0644 debian/man/fastaq_capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq_capillary_to_pairs.1 install -p -m0644 debian/man/fastaq_chunker.1 debian/fastaq/usr/share/man/man1/fastaq_chunker.1 install -p -m0644 debian/man/fastaq_count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq_count_sequences.1 install -p -m0644 debian/man/fastaq_deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq_deinterleave.1 install -p -m0644 debian/man/fastaq_enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq_enumerate_names.1 install -p -m0644 debian/man/fastaq_expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq_expand_nucleotides.1 install -p -m0644 debian/man/fastaq_extend_gaps.1 debian/fastaq/usr/share/man/man1/fastaq_extend_gaps.1 install -p -m0644 debian/man/fastaq_fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq_fasta_to_fastq.1 install -p -m0644 debian/man/fastaq_filter.1 debian/fastaq/usr/share/man/man1/fastaq_filter.1 install -p -m0644 debian/man/fastaq_get_ids.1 debian/fastaq/usr/share/man/man1/fastaq_get_ids.1 install -p -m0644 debian/man/fastaq_get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq_get_seq_flanking_gaps.1 install -p -m0644 debian/man/fastaq_insert_or_delete_bases.1 debian/fastaq/usr/share/man/man1/fastaq_insert_or_delete_bases.1 install -p -m0644 debian/man/fastaq_interleave.1 debian/fastaq/usr/share/man/man1/fastaq_interleave.1 install -p -m0644 debian/man/fastaq_long_read_simulate.1 debian/fastaq/usr/share/man/man1/fastaq_long_read_simulate.1 install -p -m0644 debian/man/fastaq_make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq_make_random_contigs.1 install -p -m0644 debian/man/fastaq_merge.1 debian/fastaq/usr/share/man/man1/fastaq_merge.1 install -p -m0644 debian/man/fastaq_replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq_replace_bases.1 install -p -m0644 debian/man/fastaq_reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq_reverse_complement.1 install -p -m0644 debian/man/fastaq_scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq_scaffolds_to_contigs.1 install -p -m0644 debian/man/fastaq_search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq_search_for_seq.1 install -p -m0644 debian/man/fastaq_sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq_sequence_trim.1 install -p -m0644 debian/man/fastaq_split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq_split_by_base_count.1 install -p -m0644 debian/man/fastaq_strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq_strip_illumina_suffix.1 install -p -m0644 debian/man/fastaq_to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq_to_fake_qual.1 install -p -m0644 debian/man/fastaq_to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq_to_fasta.1 install -p -m0644 debian/man/fastaq_to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq_to_mira_xml.1 install -p -m0644 debian/man/fastaq_to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq_to_orfs_gff.1 install -p -m0644 debian/man/fastaq_to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq_to_perfect_reads.1 install -p -m0644 debian/man/fastaq_to_quasr_primers_file.1 debian/fastaq/usr/share/man/man1/fastaq_to_quasr_primers_file.1 install -p -m0644 debian/man/fastaq_to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq_to_random_subset.1 install -p -m0644 debian/man/fastaq_to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq_to_tiling_bam.1 install -p -m0644 debian/man/fastaq_to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq_to_unique_by_id.1 install -p -m0644 debian/man/fastaq_translate.1 debian/fastaq/usr/share/man/man1/fastaq_translate.1 install -p -m0644 debian/man/fastaq_trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq_trim_ends.1 install -p -m0644 debian/man/fastaq_trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq_trim_Ns_at_end.1 man --recode UTF-8 ./fastaq_get_seq_flanking_gaps\.1 > fastaq_get_seq_flanking_gaps\.1\.new chmod 644 fastaq_get_seq_flanking_gaps.1.new mv -f fastaq_get_seq_flanking_gaps.1.new fastaq_get_seq_flanking_gaps.1 man --recode UTF-8 ./fastaq_merge\.1 > fastaq_merge\.1\.new chmod 644 fastaq_merge.1.new mv -f fastaq_merge.1.new fastaq_merge.1 man --recode UTF-8 ./fastaq_filter\.1 > fastaq_filter\.1\.new chmod 644 fastaq_filter.1.new mv -f fastaq_filter.1.new fastaq_filter.1 man --recode UTF-8 ./fastaq_strip_illumina_suffix\.1 > fastaq_strip_illumina_suffix\.1\.new chmod 644 fastaq_strip_illumina_suffix.1.new mv -f fastaq_strip_illumina_suffix.1.new fastaq_strip_illumina_suffix.1 man --recode UTF-8 ./fastaq_expand_nucleotides\.1 > fastaq_expand_nucleotides\.1\.new chmod 644 fastaq_expand_nucleotides.1.new mv -f fastaq_expand_nucleotides.1.new fastaq_expand_nucleotides.1 man --recode UTF-8 ./fastaq_enumerate_names\.1 > fastaq_enumerate_names\.1\.new chmod 644 fastaq_enumerate_names.1.new mv -f fastaq_enumerate_names.1.new fastaq_enumerate_names.1 man --recode UTF-8 ./fastaq_fasta_to_fastq\.1 > fastaq_fasta_to_fastq\.1\.new chmod 644 fastaq_fasta_to_fastq.1.new mv -f fastaq_fasta_to_fastq.1.new fastaq_fasta_to_fastq.1 man --recode UTF-8 ./fastaq_insert_or_delete_bases\.1 > fastaq_insert_or_delete_bases\.1\.new chmod 644 fastaq_insert_or_delete_bases.1.new mv -f fastaq_insert_or_delete_bases.1.new fastaq_insert_or_delete_bases.1 man --recode UTF-8 ./fastaq_to_perfect_reads\.1 > fastaq_to_perfect_reads\.1\.new chmod 644 fastaq_to_perfect_reads.1.new mv -f fastaq_to_perfect_reads.1.new fastaq_to_perfect_reads.1 man --recode UTF-8 ./fastaq_deinterleave\.1 > fastaq_deinterleave\.1\.new chmod 644 fastaq_deinterleave.1.new mv -f fastaq_deinterleave.1.new fastaq_deinterleave.1 man --recode UTF-8 ./fastaq_to_fasta\.1 > fastaq_to_fasta\.1\.new chmod 644 fastaq_to_fasta.1.new mv -f fastaq_to_fasta.1.new fastaq_to_fasta.1 man --recode UTF-8 ./fastaq_interleave\.1 > fastaq_interleave\.1\.new chmod 644 fastaq_interleave.1.new mv -f fastaq_interleave.1.new fastaq_interleave.1 man --recode UTF-8 ./fastaq_to_orfs_gff\.1 > fastaq_to_orfs_gff\.1\.new chmod 644 fastaq_to_orfs_gff.1.new mv -f fastaq_to_orfs_gff.1.new fastaq_to_orfs_gff.1 man --recode UTF-8 ./fastaq_to_tiling_bam\.1 > fastaq_to_tiling_bam\.1\.new chmod 644 fastaq_to_tiling_bam.1.new mv -f fastaq_to_tiling_bam.1.new fastaq_to_tiling_bam.1 man --recode UTF-8 ./fastaq_translate\.1 > fastaq_translate\.1\.new chmod 644 fastaq_translate.1.new mv -f fastaq_translate.1.new fastaq_translate.1 man --recode UTF-8 ./fastaq_trim_ends\.1 > fastaq_trim_ends\.1\.new chmod 644 fastaq_trim_ends.1.new mv -f fastaq_trim_ends.1.new fastaq_trim_ends.1 man --recode UTF-8 ./fastaq_search_for_seq\.1 > fastaq_search_for_seq\.1\.new chmod 644 fastaq_search_for_seq.1.new mv -f fastaq_search_for_seq.1.new fastaq_search_for_seq.1 man --recode UTF-8 ./fastaq_to_unique_by_id\.1 > fastaq_to_unique_by_id\.1\.new chmod 644 fastaq_to_unique_by_id.1.new mv -f fastaq_to_unique_by_id.1.new fastaq_to_unique_by_id.1 man --recode UTF-8 ./fastaq_to_fake_qual\.1 > fastaq_to_fake_qual\.1\.new chmod 644 fastaq_to_fake_qual.1.new mv -f fastaq_to_fake_qual.1.new fastaq_to_fake_qual.1 man --recode UTF-8 ./fastaq_to_quasr_primers_file\.1 > fastaq_to_quasr_primers_file\.1\.new chmod 644 fastaq_to_quasr_primers_file.1.new mv -f fastaq_to_quasr_primers_file.1.new fastaq_to_quasr_primers_file.1 man --recode UTF-8 ./fastaq_count_sequences\.1 > fastaq_count_sequences\.1\.new chmod 644 fastaq_count_sequences.1.new mv -f fastaq_count_sequences.1.new fastaq_count_sequences.1 man --recode UTF-8 ./fastaq_long_read_simulate\.1 > fastaq_long_read_simulate\.1\.new chmod 644 fastaq_long_read_simulate.1.new mv -f fastaq_long_read_simulate.1.new fastaq_long_read_simulate.1 man --recode UTF-8 ./fastaq_to_mira_xml\.1 > fastaq_to_mira_xml\.1\.new chmod 644 fastaq_to_mira_xml.1.new mv -f fastaq_to_mira_xml.1.new fastaq_to_mira_xml.1 man --recode UTF-8 ./fastaq_split_by_base_count\.1 > fastaq_split_by_base_count\.1\.new chmod 644 fastaq_split_by_base_count.1.new mv -f fastaq_split_by_base_count.1.new fastaq_split_by_base_count.1 man --recode UTF-8 ./fastaq_capillary_to_pairs\.1 > fastaq_capillary_to_pairs\.1\.new chmod 644 fastaq_capillary_to_pairs.1.new mv -f fastaq_capillary_to_pairs.1.new fastaq_capillary_to_pairs.1 man --recode UTF-8 ./fastaq_to_random_subset\.1 > fastaq_to_random_subset\.1\.new chmod 644 fastaq_to_random_subset.1.new mv -f fastaq_to_random_subset.1.new fastaq_to_random_subset.1 man --recode UTF-8 ./fastaq_sequence_trim\.1 > fastaq_sequence_trim\.1\.new chmod 644 fastaq_sequence_trim.1.new mv -f fastaq_sequence_trim.1.new fastaq_sequence_trim.1 man --recode UTF-8 ./fastaq_extend_gaps\.1 > fastaq_extend_gaps\.1\.new chmod 644 fastaq_extend_gaps.1.new mv -f fastaq_extend_gaps.1.new fastaq_extend_gaps.1 man --recode UTF-8 ./fastaq_chunker\.1 > fastaq_chunker\.1\.new chmod 644 fastaq_chunker.1.new mv -f fastaq_chunker.1.new fastaq_chunker.1 man --recode UTF-8 ./fastaq_trim_Ns_at_end\.1 > fastaq_trim_Ns_at_end\.1\.new chmod 644 fastaq_trim_Ns_at_end.1.new mv -f fastaq_trim_Ns_at_end.1.new fastaq_trim_Ns_at_end.1 man --recode UTF-8 ./fastaq_get_ids\.1 > fastaq_get_ids\.1\.new chmod 644 fastaq_get_ids.1.new mv -f fastaq_get_ids.1.new fastaq_get_ids.1 man --recode UTF-8 ./fastaq_reverse_complement\.1 > fastaq_reverse_complement\.1\.new chmod 644 fastaq_reverse_complement.1.new mv -f fastaq_reverse_complement.1.new fastaq_reverse_complement.1 man --recode UTF-8 ./fastaq_scaffolds_to_contigs\.1 > fastaq_scaffolds_to_contigs\.1\.new chmod 644 fastaq_scaffolds_to_contigs.1.new mv -f fastaq_scaffolds_to_contigs.1.new fastaq_scaffolds_to_contigs.1 man --recode UTF-8 ./fastaq_make_random_contigs\.1 > fastaq_make_random_contigs\.1\.new chmod 644 fastaq_make_random_contigs.1.new mv -f fastaq_make_random_contigs.1.new fastaq_make_random_contigs.1 man --recode UTF-8 ./fastaq_replace_bases\.1 > fastaq_replace_bases\.1\.new chmod 644 fastaq_replace_bases.1.new mv -f fastaq_replace_bases.1.new fastaq_replace_bases.1 make[1]: Leaving directory '/«PKGBUILDDIR»' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:149: version: 2.20150719 D: dh_python3 dh_python3:150: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:151: options: {'suggests': None, 'O': '--buildsystem=pybuild', 'no_package': None, 'recommends': None, 'ignore_shebangs': False, 'package': None, 'compile_all': False, 'no_shebang_rewrite': False, 'arch': None, 'shebang': None, 'regexpr': None, 'no_ext_rename': False, 'guess_deps': True, 'clean_dbg_pkg': True, 'depends': None, 'requires': None, 'vrange': None, 'verbose': False, 'skip_private': False} D: dh_python3 dh_python3:152: args: [] D: dh_python3 dh_python3:154: supported Python versions: 3.4,3.5 (default=3.4) D: dh_python3 debhelper:98: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:171: processing package fastaq... D: dh_python3 fs:47: moving files from debian/fastaq/usr/lib/python3.4/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:238: package fastaq details = {'ext_vers': set(), 'requires.txt': {'debian/fastaq/usr/lib/python3/dist-packages/Fastaq-1.5.0.egg-info/requires.txt'}, 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'nsp.txt': set(), 'private_dirs': {}, 'public_vers': {Version('3')}, 'egg-info': set(), 'ext_no_version': set(), 'compile': True} D: dh_python3 depends:107: generating dependencies for package fastaq D: dh_python3 pydist:121: trying to find dependency for nose >= 1.3 (python=None) D: dh_python3 depends:242: D={'python3:any (>= 3.3.2-2~)', 'python3-nose', 'python3'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/man/man1/fastaq_get_seq_flanking_gaps.1 usr/share/man/man1/fastaq_merge.1 usr/share/man/man1/fastaq_filter.1 usr/share/man/man1/fastaq_strip_illumina_suffix.1 usr/share/man/man1/fastaq_expand_nucleotides.1 usr/share/man/man1/fastaq_enumerate_names.1 usr/share/man/man1/fastaq_fasta_to_fastq.1 usr/share/man/man1/fastaq_insert_or_delete_bases.1 usr/share/man/man1/fastaq_to_perfect_reads.1 usr/share/man/man1/fastaq_deinterleave.1 usr/share/man/man1/fastaq_to_fasta.1 usr/share/man/man1/fastaq_interleave.1 usr/share/man/man1/fastaq_to_orfs_gff.1 usr/share/man/man1/fastaq_to_tiling_bam.1 usr/share/man/man1/fastaq_translate.1 usr/share/man/man1/fastaq_trim_ends.1 usr/share/man/man1/fastaq_search_for_seq.1 usr/share/man/man1/fastaq_to_unique_by_id.1 usr/share/man/man1/fastaq_to_fake_qual.1 usr/share/man/man1/fastaq_to_quasr_primers_file.1 usr/share/man/man1/fastaq_count_sequences.1 usr/share/man/man1/fastaq_long_read_simulate.1 usr/share/man/man1/fastaq_to_mira_xml.1 usr/share/man/man1/fastaq_split_by_base_count.1 usr/share/man/man1/fastaq_capillary_to_pairs.1 usr/share/man/man1/fastaq_to_random_subset.1 usr/share/man/man1/fastaq_sequence_trim.1 usr/share/man/man1/fastaq_extend_gaps.1 usr/share/man/man1/fastaq_chunker.1 usr/share/man/man1/fastaq_trim_Ns_at_end.1 usr/share/man/man1/fastaq_get_ids.1 usr/share/man/man1/fastaq_reverse_complement.1 usr/share/man/man1/fastaq_scaffolds_to_contigs.1 usr/share/man/man1/fastaq_make_random_contigs.1 usr/share/man/man1/fastaq_replace_bases.1 usr/share/doc/fastaq/changelog.Debian gzip -9nf usr/share/man/man1/fastaq_get_seq_flanking_gaps.1 usr/share/man/man1/fastaq_merge.1 usr/share/man/man1/fastaq_filter.1 usr/share/man/man1/fastaq_strip_illumina_suffix.1 usr/share/man/man1/fastaq_expand_nucleotides.1 usr/share/man/man1/fastaq_enumerate_names.1 usr/share/man/man1/fastaq_fasta_to_fastq.1 usr/share/man/man1/fastaq_insert_or_delete_bases.1 usr/share/man/man1/fastaq_to_perfect_reads.1 usr/share/man/man1/fastaq_deinterleave.1 usr/share/man/man1/fastaq_to_fasta.1 usr/share/man/man1/fastaq_interleave.1 usr/share/man/man1/fastaq_to_orfs_gff.1 usr/share/man/man1/fastaq_to_tiling_bam.1 usr/share/man/man1/fastaq_translate.1 usr/share/man/man1/fastaq_trim_ends.1 usr/share/man/man1/fastaq_search_for_seq.1 usr/share/man/man1/fastaq_to_unique_by_id.1 usr/share/man/man1/fastaq_to_fake_qual.1 usr/share/man/man1/fastaq_to_quasr_primers_file.1 usr/share/man/man1/fastaq_count_sequences.1 usr/share/man/man1/fastaq_long_read_simulate.1 usr/share/man/man1/fastaq_to_mira_xml.1 usr/share/man/man1/fastaq_split_by_base_count.1 usr/share/man/man1/fastaq_capillary_to_pairs.1 usr/share/man/man1/fastaq_to_random_subset.1 usr/share/man/man1/fastaq_sequence_trim.1 usr/share/man/man1/fastaq_extend_gaps.1 usr/share/man/man1/fastaq_chunker.1 usr/share/man/man1/fastaq_trim_Ns_at_end.1 usr/share/man/man1/fastaq_get_ids.1 usr/share/man/man1/fastaq_reverse_complement.1 usr/share/man/man1/fastaq_scaffolds_to_contigs.1 usr/share/man/man1/fastaq_make_random_contigs.1 usr/share/man/man1/fastaq_replace_bases.1 usr/share/doc/fastaq/changelog.Debian cd '/«PKGBUILDDIR»' dh_fixperms -O--buildsystem=pybuild find debian/fastaq -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastaq ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man debian/fastaq/usr/man/ debian/fastaq/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/lib/x86_64-linux-gnu/perl5/5.20 debian/fastaq/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/fastaq/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_installdeb -O--buildsystem=pybuild install -d debian/fastaq/DEBIAN printf '#!/bin/sh set -e ' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chown 0:0 debian/fastaq/DEBIAN/postinst chmod 0755 debian/fastaq/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chown 0:0 debian/fastaq/DEBIAN/prerm chmod 0755 debian/fastaq/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -Pdebian/fastaq dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/fastaq/DEBIAN/control chown 0:0 debian/fastaq/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: dh_gencontrol debug symbol wrapper: packages to act on: dh_gencontrol debug symbol wrapper: ignored packages: dh_md5sums -O--buildsystem=pybuild (cd debian/fastaq >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/fastaq/DEBIAN/md5sums chown 0:0 debian/fastaq/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/fastaq .. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing fastaq (in debian/fastaq); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/fastaq/DEBIAN/control, package fastaq, directory debian/fastaq pkgstripfiles: PNG optimization for package fastaq took 0 s dpkg-deb: building package `fastaq' in `../fastaq_1.5.0-1build1_all.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../fastaq_1.5.0-1build1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build fastaq-1.5.0 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20150722-0649 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ fastaq_1.5.0-1build1_amd64.changes: ─────────────────────────────────── Format: 1.8 Date: Wed, 22 Jul 2015 06:46:41 +0000 Source: fastaq Binary: fastaq Architecture: all Version: 1.5.0-1build1 Distribution: wily-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (1.5.0-1build1) wily; urgency=medium . * No-change rebuild for python3.5 transition Checksums-Sha1: 61dc3d654f40fbc1bf9fa8f7ec238c8d28ce47e8 49970 fastaq_1.5.0-1build1_all.deb Checksums-Sha256: 0485e9784c9a5233614479d37562447e5b22deb857bef0ec95b5464795d8a68c 49970 fastaq_1.5.0-1build1_all.deb Files: d00f7ef34265f4c81c66ba77b093cedb 49970 science optional fastaq_1.5.0-1build1_all.deb Original-Maintainer: Debian Med Packaging Team ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ fastaq_1.5.0-1build1_all.deb ──────────────────────────── new debian package, version 2.0. size 49970 bytes: control archive=5389 bytes. 5187 bytes, 163 lines control 5994 bytes, 81 lines md5sums 156 bytes, 9 lines * postinst #!/bin/sh 385 bytes, 12 lines * prerm #!/bin/sh Package: fastaq Version: 1.5.0-1build1 Architecture: all Maintainer: Ubuntu Developers Installed-Size: 169 Depends: python3, python3-nose, python3:any (>= 3.3.2-2~) Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/Fastaq Description: FASTA and FASTQ file manipulation tools A collection of scripts that perform useful and common fasta/q manipulation tasks. . All scripts automatically detect whether the input is a FASTA or FASTQ file. . Input and output files can be gzipped. . fastaq_capillary_to_pairs - Given a fasta/q file of capillary reads, makes an interleaved file of read pairs . fastaq_chunker - Splits a multi fasta/q file into separate files. Splits sequences into chunks of a fixed size. . fastaq_count_sequences - Counts the number of sequences in a fasta/q file . fastaq_deinterleave - Deinterleaves fasta/q file, so that reads are written alternately between two output files . fastaq_enumerate_names - Renames sequences in a file, calling them 1,2,3... . fastaq_expand_nucleotides - Makes all combinations of sequences in input file by using all possibilities of redundant bases. e.g. ART could be AAT or AGT. . fastaq_extend_gaps - Extends the length of all gaps (and trims the start/end of sequences) in a fasta/q file. . fastaq_fasta_to_fastq - Given a fasta and qual file, makes a fastq file. . fastaq_filter - Filters a fasta/q file by sequence length and/or by name matching a regular expression. . fastaq_get_ids - Gets IDs from each sequence in a fasta or fastq file. . fastaq_get_seq_flanking_gaps - Gets the sequences either side of gaps in a fasta/q file. . fastaq_insert_or_delete_bases - Deletes or inserts bases at given position(s) from a fasta/q file. . fastaq_interleave - Interleaves two fasta/q files, so that reads are written alternately first/second in output file. . fastaq_long_read_simulate - Simulates long reads from a fasta/q file. Can optionally make insertions into the reads, like pacbio does. . fastaq_make_random_contigs - Makes a multi-fasta file of random sequences, all of the same length. Each base has equal chance of being A,C,G or T . fastaq_merge - Converts multi fasta/q file to single sequence file, preserving original order of sequences. . fastaq_replace_bases - Replaces all occurences of one letter with another in a fasta/q file. . fastaq_reverse_complement - Reverse complements all sequences in a fasta/q file . fastaq_scaffolds_to_contigs - Creates a file of contigs from a file of scaffolds - i.e. breaks at every gap in the input. . fastaq_search_for_seq - Searches for an exact match on a given string and its reverese complement, in every sequences of a fasta/q file. Case insensitive. Guaranteed to find all hits. . fastaq_sequence_trim - Trims sequences off the start of all sequences in a pair of fasta/q files, whenever there is a perfect match. Only keeps a read pair if both reads of the pair are at least a minimum length after any trimming. . fastaq_split_by_base_count - Splits a multi fasta/q file into separate files. Does not split sequences. Puts up to max_bases into each split file. The exception is that any sequence longer than max_bases is put into its own file. . fastaq_strip_illumina_suffix - Strips /1 or /2 off the end of every read name in a fasta/q file. . fastaq_to_fake_qual - Makes fake quality scores file from a fasta/q file. . fastaq_to_fasta - Converts sequence file to FASTA format. . fastaq_to_mira_xml - Creates an xml file from a fasta/q file of reads, for use with Mira assembler. . fastaq_to_orfs_gff - Writes a GFF file of open reading frames from a fasta/q file . fastaq_to_perfect_reads - Makes perfect paired end fastq reads from a fasta/q file, with insert sizes sampled from a normal distribution. Read orientation is innies. Output is an interleaved fastq file. . fastaq_to_quasr_primers_file - Converts a fasta/q file to QUASR primers format: just the sequence on each line and its reverse complement, tab separated. . fastaq_to_random_subset - Takes a random subset of reads from a fasta/q file and optionally the corresponding read from a mates file. Ouptut is interleaved if mates file given. . fastaq_to_tiling_bam - Takes a fasta/q file. Makes a BAM file containing perfect (unpaired) reads tiling the whole genome. . fastaq_to_unique_by_id - Removes duplicate sequences from a fasta/q file, based on their names. If the same name is found more than once, then the longest sequence is kept. Order of sequences is preserved in output. . fastaq_translate - Translates all sequences in a fasta or fastq file. Output is always fasta format . fastaq_trim_ends - Trims set number of bases off each sequence in a fasta/q file . fastaq_trim_Ns_at_end - Trims any Ns off each sequence in a fasta/q file. Does nothing to gaps in the middle, just trims the ends . A developer API is also provided by this package. There are plenty of examples in tasks.py Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2015-07-22 06:49 ./ drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/ drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/bin/ -rwxr-xr-x root/root 675 2015-07-22 06:49 ./usr/bin/fastaq_capillary_to_pairs -rwxr-xr-x root/root 1088 2015-07-22 06:49 ./usr/bin/fastaq_chunker -rwxr-xr-x root/root 346 2015-07-22 06:49 ./usr/bin/fastaq_count_sequences -rwxr-xr-x root/root 794 2015-07-22 06:49 ./usr/bin/fastaq_deinterleave -rwxr-xr-x root/root 971 2015-07-22 06:49 ./usr/bin/fastaq_enumerate_names -rwxr-xr-x root/root 604 2015-07-22 06:49 ./usr/bin/fastaq_expand_nucleotides -rwxr-xr-x root/root 779 2015-07-22 06:49 ./usr/bin/fastaq_extend_gaps -rwxr-xr-x root/root 579 2015-07-22 06:49 ./usr/bin/fastaq_fasta_to_fastq -rwxr-xr-x root/root 1318 2015-07-22 06:49 ./usr/bin/fastaq_filter -rwxr-xr-x root/root 417 2015-07-22 06:49 ./usr/bin/fastaq_get_ids -rwxr-xr-x root/root 747 2015-07-22 06:49 ./usr/bin/fastaq_get_seq_flanking_gaps -rwxr-xr-x root/root 3987 2015-07-22 06:49 ./usr/bin/fastaq_insert_or_delete_bases -rwxr-xr-x root/root 620 2015-07-22 06:49 ./usr/bin/fastaq_interleave -rwxr-xr-x root/root 3248 2015-07-22 06:49 ./usr/bin/fastaq_long_read_simulate -rwxr-xr-x root/root 1299 2015-07-22 06:49 ./usr/bin/fastaq_make_random_contigs -rwxr-xr-x root/root 654 2015-07-22 06:49 ./usr/bin/fastaq_merge -rwxr-xr-x root/root 596 2015-07-22 06:49 ./usr/bin/fastaq_replace_bases -rwxr-xr-x root/root 453 2015-07-22 06:49 ./usr/bin/fastaq_reverse_complement -rwxr-xr-x root/root 660 2015-07-22 06:49 ./usr/bin/fastaq_scaffolds_to_contigs -rwxr-xr-x root/root 720 2015-07-22 06:49 ./usr/bin/fastaq_search_for_seq -rwxr-xr-x root/root 1297 2015-07-22 06:49 ./usr/bin/fastaq_sequence_trim -rwxr-xr-x root/root 915 2015-07-22 06:49 ./usr/bin/fastaq_split_by_base_count -rwxr-xr-x root/root 469 2015-07-22 06:49 ./usr/bin/fastaq_strip_illumina_suffix -rwxr-xr-x root/root 567 2015-07-22 06:49 ./usr/bin/fastaq_to_fake_qual -rwxr-xr-x root/root 848 2015-07-22 06:49 ./usr/bin/fastaq_to_fasta -rwxr-xr-x root/root 469 2015-07-22 06:49 ./usr/bin/fastaq_to_mira_xml -rwxr-xr-x root/root 619 2015-07-22 06:49 ./usr/bin/fastaq_to_orfs_gff -rwxr-xr-x root/root 3985 2015-07-22 06:49 ./usr/bin/fastaq_to_perfect_reads -rwxr-xr-x root/root 499 2015-07-22 06:49 ./usr/bin/fastaq_to_quasr_primers_file -rwxr-xr-x root/root 1387 2015-07-22 06:49 ./usr/bin/fastaq_to_random_subset -rwxr-xr-x root/root 2830 2015-07-22 06:49 ./usr/bin/fastaq_to_tiling_bam -rwxr-xr-x root/root 570 2015-07-22 06:49 ./usr/bin/fastaq_to_unique_by_id -rwxr-xr-x root/root 644 2015-07-22 06:49 ./usr/bin/fastaq_translate -rwxr-xr-x root/root 503 2015-07-22 06:49 ./usr/bin/fastaq_trim_Ns_at_end -rwxr-xr-x root/root 689 2015-07-22 06:49 ./usr/bin/fastaq_trim_ends drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/lib/ drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/lib/python3/ drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/lib/python3/dist-packages/Fastaq-1.5.0.egg-info/ -rw-r--r-- root/root 2326 2015-07-22 06:49 ./usr/lib/python3/dist-packages/Fastaq-1.5.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2015-07-22 06:49 ./usr/lib/python3/dist-packages/Fastaq-1.5.0.egg-info/dependency_links.txt -rw-r--r-- root/root 12 2015-07-22 06:49 ./usr/lib/python3/dist-packages/Fastaq-1.5.0.egg-info/requires.txt -rw-r--r-- root/root 7 2015-07-22 06:49 ./usr/lib/python3/dist-packages/Fastaq-1.5.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/lib/python3/dist-packages/fastaq/ -rw-r--r-- root/root 76 2014-10-14 15:57 ./usr/lib/python3/dist-packages/fastaq/__init__.py -rw-r--r-- root/root 3504 2014-10-14 15:57 ./usr/lib/python3/dist-packages/fastaq/intervals.py -rw-r--r-- root/root 21149 2014-10-14 15:57 ./usr/lib/python3/dist-packages/fastaq/sequences.py -rw-r--r-- root/root 23051 2014-10-14 15:57 ./usr/lib/python3/dist-packages/fastaq/tasks.py -rw-r--r-- root/root 2277 2014-10-14 15:57 ./usr/lib/python3/dist-packages/fastaq/utils.py drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/share/ drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/share/doc/fastaq/ -rw-r--r-- root/root 251 2015-07-22 06:46 ./usr/share/doc/fastaq/changelog.Debian.gz -rw-r--r-- root/root 991 2014-10-23 18:29 ./usr/share/doc/fastaq/copyright drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/share/man/ drwxr-xr-x root/root 0 2015-07-22 06:49 ./usr/share/man/man1/ -rw-r--r-- root/root 699 2015-07-22 06:49 ./usr/share/man/man1/fastaq_capillary_to_pairs.1.gz -rw-r--r-- root/root 768 2015-07-22 06:49 ./usr/share/man/man1/fastaq_chunker.1.gz -rw-r--r-- root/root 544 2015-07-22 06:49 ./usr/share/man/man1/fastaq_count_sequences.1.gz -rw-r--r-- root/root 658 2015-07-22 06:49 ./usr/share/man/man1/fastaq_deinterleave.1.gz -rw-r--r-- root/root 711 2015-07-22 06:49 ./usr/share/man/man1/fastaq_enumerate_names.1.gz -rw-r--r-- root/root 672 2015-07-22 06:49 ./usr/share/man/man1/fastaq_expand_nucleotides.1.gz -rw-r--r-- root/root 708 2015-07-22 06:49 ./usr/share/man/man1/fastaq_extend_gaps.1.gz -rw-r--r-- root/root 572 2015-07-22 06:49 ./usr/share/man/man1/fastaq_fasta_to_fastq.1.gz -rw-r--r-- root/root 754 2015-07-22 06:49 ./usr/share/man/man1/fastaq_filter.1.gz -rw-r--r-- root/root 553 2015-07-22 06:49 ./usr/share/man/man1/fastaq_get_ids.1.gz -rw-r--r-- root/root 631 2015-07-22 06:49 ./usr/share/man/man1/fastaq_get_seq_flanking_gaps.1.gz -rw-r--r-- root/root 899 2015-07-22 06:49 ./usr/share/man/man1/fastaq_insert_or_delete_bases.1.gz -rw-r--r-- root/root 614 2015-07-22 06:49 ./usr/share/man/man1/fastaq_interleave.1.gz -rw-r--r-- root/root 1193 2015-07-22 06:49 ./usr/share/man/man1/fastaq_long_read_simulate.1.gz -rw-r--r-- root/root 832 2015-07-22 06:49 ./usr/share/man/man1/fastaq_make_random_contigs.1.gz -rw-r--r-- root/root 627 2015-07-22 06:49 ./usr/share/man/man1/fastaq_merge.1.gz -rw-r--r-- root/root 604 2015-07-22 06:49 ./usr/share/man/man1/fastaq_replace_bases.1.gz -rw-r--r-- root/root 572 2015-07-22 06:49 ./usr/share/man/man1/fastaq_reverse_complement.1.gz -rw-r--r-- root/root 649 2015-07-22 06:49 ./usr/share/man/man1/fastaq_scaffolds_to_contigs.1.gz -rw-r--r-- root/root 688 2015-07-22 06:49 ./usr/share/man/man1/fastaq_search_for_seq.1.gz -rw-r--r-- root/root 757 2015-07-22 06:49 ./usr/share/man/man1/fastaq_sequence_trim.1.gz -rw-r--r-- root/root 724 2015-07-22 06:49 ./usr/share/man/man1/fastaq_split_by_base_count.1.gz -rw-r--r-- root/root 599 2015-07-22 06:49 ./usr/share/man/man1/fastaq_strip_illumina_suffix.1.gz -rw-r--r-- root/root 593 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_fake_qual.1.gz -rw-r--r-- root/root 682 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_fasta.1.gz -rw-r--r-- root/root 589 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_mira_xml.1.gz -rw-r--r-- root/root 618 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_orfs_gff.1.gz -rw-r--r-- root/root 875 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_perfect_reads.1.gz -rw-r--r-- root/root 614 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_quasr_primers_file.1.gz -rw-r--r-- root/root 696 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_random_subset.1.gz -rw-r--r-- root/root 751 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_tiling_bam.1.gz -rw-r--r-- root/root 641 2015-07-22 06:49 ./usr/share/man/man1/fastaq_to_unique_by_id.1.gz -rw-r--r-- root/root 609 2015-07-22 06:49 ./usr/share/man/man1/fastaq_translate.1.gz -rw-r--r-- root/root 604 2015-07-22 06:49 ./usr/share/man/man1/fastaq_trim_Ns_at_end.1.gz -rw-r--r-- root/root 605 2015-07-22 06:49 ./usr/share/man/man1/fastaq_trim_ends.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 2352 Build-Time: 24 Distribution: wily-proposed Host Architecture: amd64 Install-Time: 36 Job: fastaq_1.5.0-1build1.dsc Machine Architecture: amd64 Package: fastaq Package-Time: 63 Source-Version: 1.5.0-1build1 Space: 2352 Status: successful Version: 1.5.0-1build1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20150722-0649 Build needed 00:01:03, 2352k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-7712871'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-7712871/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-7712871'] Unmounting chroot for build PACKAGEBUILD-7712871... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-7712871'] Removing build PACKAGEBUILD-7712871