RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-14 3.19.0-33-generic #38~14.04.1-Ubuntu SMP Fri Nov 6 18:17:28 UTC 2015 x86_64 Buildd toolchain package versions: launchpad-buildd_135 python-lpbuildd_135 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 30 Nov 23:08:40 ntpdate[1648]: adjust time server 10.211.37.1 offset 0.275442 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8360103', '/home/buildd/filecache-default/8204889cda79fca0b488b979ea0c52fb9d6dbd17'] Unpacking chroot for build PACKAGEBUILD-8360103 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8360103'] Mounting chroot for build PACKAGEBUILD-8360103 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8360103', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8360103 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8360103', 'amd64'] Updating debian chroot for build PACKAGEBUILD-8360103 Get:1 http://ftpmaster.internal xenial InRelease [218 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [64.4 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [64.4 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [218 kB] Get:5 http://ftpmaster.internal xenial/main amd64 Packages [1449 kB] Get:6 http://ftpmaster.internal xenial/universe amd64 Packages [6990 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [843 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4720 kB] Get:9 http://ftpmaster.internal xenial-security/main amd64 Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe amd64 Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main amd64 Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe amd64 Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main amd64 Packages [52.9 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe amd64 Packages [230 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [28.1 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [118 kB] Fetched 15.0 MB in 8s (1733 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: libapt-pkg5.0 libisl15 The following packages will be upgraded: advancecomp apt apt-transport-https base-files binutils bsdutils cpp cpp-5 debconf diffutils dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpx0 libpng12-0 libquadmath0 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount openssl pkg-create-dbgsym systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 89 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After this operation, 322 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files amd64 9.4ubuntu3 [62.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils amd64 1:2.27.1-1ubuntu3 [51.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils amd64 1:3.3-2 [156 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg amd64 1.18.3ubuntu1 [2081 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs amd64 1.42.13-1ubuntu1 [188 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs amd64 1.42.13-1ubuntu1 [771 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main findutils amd64 4.4.2-10 [281 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep amd64 2.22-1 [149 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main hostname amd64 3.16ubuntu2 [11.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main init amd64 1.24ubuntu2 [3966 B] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 amd64 2.27.1-1ubuntu3 [62.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 amd64 2.27.1-1ubuntu3 [14.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 amd64 2.27.1-1ubuntu3 [107 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 amd64 2.27.1-1ubuntu3 [139 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils amd64 2.88dsf-59.2ubuntu3 [25.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main initscripts amd64 2.88dsf-59.2ubuntu3 [24.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main util-linux amd64 2.27.1-1ubuntu3 [847 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 amd64 228-2ubuntu1 [56.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main udev amd64 228-2ubuntu1 [980 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 amd64 228-2ubuntu1 [203 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main systemd amd64 228-2ubuntu1 [3491 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libselinux1 amd64 2.4-3 [56.0 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 amd64 2.10-0ubuntu8 [29.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 amd64 1:2.4.4-4ubuntu1 [36.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 amd64 1:2.24-12 [12.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 amd64 2.27.1-1ubuntu3 [114 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin amd64 1:2.24-12 [20.2 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20150917ubuntu1 [13.4 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main mount amd64 2.27.1-1ubuntu3 [121 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main tar amd64 1.28-2.1 [209 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 amd64 5.2.1-27ubuntu1 [55.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 amd64 5.2.1-27ubuntu1 [27.4 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 amd64 5.2.1-27ubuntu1 [8906 B] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 amd64 5.2.1-27ubuntu1 [269 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main liblsan0 amd64 5.2.1-27ubuntu1 [109 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main libtsan0 amd64 5.2.1-27ubuntu1 [249 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base amd64 5.2.1-27ubuntu1 [17.0 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 amd64 1:5.2.1-27ubuntu1 [38.8 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 amd64 5.2.1-27ubuntu1 [100 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main libcilkrts5 amd64 5.2.1-27ubuntu1 [40.1 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main libmpx0 amd64 5.2.1-27ubuntu1 [9738 B] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main libquadmath0 amd64 5.2.1-27ubuntu1 [131 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 amd64 0.15-3 [514 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 amd64 5.2.1-27ubuntu1 [26.4 MB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 amd64 5.2.1-27ubuntu1 [30.9 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial-proposed/main binutils amd64 2.25.90.20151125-2ubuntu1 [2310 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 amd64 5.2.1-27ubuntu1 [28.1 MB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 amd64 5.2.1-27ubuntu1 [26.6 MB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev amd64 5.2.1-27ubuntu1 [2230 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev amd64 5.2.1-27ubuntu1 [1423 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 amd64 5.2.1-27ubuntu1 [393 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libapt-pkg5.0 amd64 1.1.3 [676 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt amd64 1.1.3 [961 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main gpgv amd64 1.4.19-6ubuntu1 [165 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main gnupg amd64 1.4.19-6ubuntu1 [626 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv amd64 228-2ubuntu1 [14.9 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 amd64 1.42.13-1ubuntu1 [65.7 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 amd64 0.198ubuntu1 [6368 B] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 amd64 1.20-1 [32.8 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 amd64 1.6.4-3 [336 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 amd64 2.4-2 [186 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:67 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 amd64 2.4-3 [79.3 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libss2 amd64 1.42.13-1ubuntu1 [70.0 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 amd64 4.7-2 [43.1 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 amd64 3.3.18-1ubuntu1 [520 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 amd64 1.2.54-1 [116 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsqlite3-0 amd64 3.9.2-1 [395 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 amd64 1.0.2d-0ubuntu2 [1079 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 amd64 1.13.2+dfsg-4 [120 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 amd64 1.13.2+dfsg-4 [274 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 amd64 1.13.2+dfsg-4 [30.4 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 amd64 1.13.2+dfsg-4 [81.3 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libkeyutils1 amd64 1.5.9-8 [9824 B] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 amd64 1.32-3ubuntu1 [45.5 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls amd64 7.45.0-1ubuntu1 [183 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt-transport-https amd64 1.1.3 [25.3 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 amd64 1.10.4-1ubuntu2 [161 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main openssl amd64 1.0.2d-0ubuntu2 [511 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp amd64 1.20-1 [160 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main cpp amd64 4:5.2.1-13ubuntu8 [27.5 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main gcc amd64 4:5.2.1-13ubuntu8 [5168 B] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main g++ amd64 4:5.2.1-13ubuntu8 [1498 B] Get:90 http://ftpmaster.internal/ubuntu/ xenial/main linux-libc-dev amd64 4.2.0-19.23 [820 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 108 MB in 36s (2952 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11690 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu3_amd64.deb ... Unpacking base-files (9.4ubuntu3) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu3) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11692 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.27.1-1ubuntu3_amd64.deb ... Unpacking bsdutils (1:2.27.1-1ubuntu3) over (1:2.26.2-6ubuntu3) ... Setting up bsdutils (1:2.27.1-1ubuntu3) ... (Reading database ... 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Exiting. virtio network devices detected, disabling predictable interface names in /etc/systemd/network/50-virtio-kernel-names.link Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libgomp1:amd64 (5.2.1-27ubuntu1) ... Setting up libitm1:amd64 (5.2.1-27ubuntu1) ... Setting up libatomic1:amd64 (5.2.1-27ubuntu1) ... Setting up libasan2:amd64 (5.2.1-27ubuntu1) ... Setting up liblsan0:amd64 (5.2.1-27ubuntu1) ... Setting up libtsan0:amd64 (5.2.1-27ubuntu1) ... Setting up libubsan0:amd64 (5.2.1-27ubuntu1) ... Setting up libcilkrts5:amd64 (5.2.1-27ubuntu1) ... Setting up libmpx0:amd64 (5.2.1-27ubuntu1) ... Setting up libquadmath0:amd64 (5.2.1-27ubuntu1) ... Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... Setting up libisl15:amd64 (0.15-3) ... Setting up cpp-5 (5.2.1-27ubuntu1) ... Setting up libcc1-0:amd64 (5.2.1-27ubuntu1) ... Setting up binutils (2.25.90.20151125-2ubuntu1) ... Setting up libgcc-5-dev:amd64 (5.2.1-27ubuntu1) ... Setting up gcc-5 (5.2.1-27ubuntu1) ... Setting up libstdc++-5-dev:amd64 (5.2.1-27ubuntu1) ... Setting up g++-5 (5.2.1-27ubuntu1) ... Setting up apt (1.1.3) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libtasn1-6:amd64 (4.7-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.18-1ubuntu1) ... Setting up libpng12-0:amd64 (1.2.54-1) ... Setting up libsqlite3-0:amd64 (3.9.2-1) ... Setting up libssl1.0.0:amd64 (1.0.2d-0ubuntu2) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-4) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-4) ... Setting up libkeyutils1:amd64 (1.5.9-8) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-4) ... Setting up libidn11:amd64 (1.32-3ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.45.0-1ubuntu1) ... Setting up apt-transport-https (1.1.3) ... Setting up libdbus-1-3:amd64 (1.10.4-1ubuntu2) ... Setting up openssl (1.0.2d-0ubuntu2) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-13ubuntu8) ... Setting up libdpkg-perl (1.18.3ubuntu1) ... Setting up dpkg-dev (1.18.3ubuntu1) ... Setting up gcc (4:5.2.1-13ubuntu8) ... Setting up g++ (4:5.2.1-13ubuntu8) ... Setting up linux-libc-dev:amd64 (4.2.0-19.23) ... Setting up pkg-create-dbgsym (0.70) ... Processing triggers for systemd (228-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8360103', 'amd64', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=xenial-proposed', '--purge=never', '--nolog', '-A', 'fastaq_3.11.0-1.dsc'] Initiating build PACKAGEBUILD-8360103 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-33-generic #38~14.04.1-Ubuntu SMP Fri Nov 6 18:17:28 UTC 2015 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-14.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ fastaq 3.11.0-1 (amd64) 30 Nov 2015 23:10 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: fastaq Version: 3.11.0-1 Source Version: 3.11.0-1 Distribution: xenial-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/fastaq-mgQ5AR/fastaq-3.11.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/fastaq-mgQ5AR' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8360103/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── fastaq_3.11.0-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-8RDRNm/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Sources [208 B] Ign:4 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Sources Get:5 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Packages [527 B] Ign:5 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Packages [527 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-8RDRNm/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11713 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python3, python3-setuptools, python3-nose, samtools, help2man Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), python3, python3-setuptools, python3-nose, samtools, help2man dpkg-deb: building package 'sbuild-build-depends-fastaq-dummy' in '/«BUILDDIR»/resolver-_B3WxS/apt_archive/sbuild-build-depends-fastaq-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Sources [448 B] Ign:4 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Sources Get:5 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Packages [715 B] Ign:5 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Sources [448 B] Get:5 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Packages [715 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install fastaq build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: bsdmainutils debhelper dh-python dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 liblocale-gettext-perl libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libtimedate-perl libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3-nose python3-pkg-resources python3-setuptools python3.5 python3.5-minimal samtools Suggested packages: wamerican | wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-nose-doc python-setuptools-doc python3.5-venv python3.5-doc binfmt-support python Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-python dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 liblocale-gettext-perl libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libtimedate-perl libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3-nose python3-pkg-resources python3-setuptools python3.5 python3.5-minimal samtools sbuild-build-depends-fastaq-dummy 0 upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB/19.9 MB of archives. After this operation, 83.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-fastaq-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-_B3WxS/apt_archive ./ sbuild-build-depends-fastaq-dummy 0.invalid.0 [958 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main amd64 liblocale-gettext-perl amd64 1.07-1 [18.0 kB] Get:3 http://ftpmaster.internal/ubuntu xenial/main amd64 libmpdec2 amd64 2.4.1-1 [82.7 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main amd64 libpython3.5-minimal amd64 3.5.1~rc1-2ubuntu1 [522 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main amd64 libexpat1 amd64 2.1.0-7 [71.4 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main amd64 python3.5-minimal amd64 3.5.1~rc1-2ubuntu1 [1556 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main amd64 python3-minimal amd64 3.5.0-2 [23.7 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main amd64 libpython3.5-stdlib amd64 3.5.1~rc1-2ubuntu1 [2119 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main amd64 python3.5 amd64 3.5.1~rc1-2ubuntu1 [152 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main amd64 libpython3-stdlib amd64 3.5.0-2 [7074 B] Get:12 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-python all 2.20151103ubuntu1 [74.4 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main amd64 python3 amd64 3.5.0-2 [8644 B] Get:14 http://ftpmaster.internal/ubuntu xenial/main amd64 libasprintf0v5 amd64 0.19.4-1ubuntu3 [6676 B] Get:15 http://ftpmaster.internal/ubuntu xenial/main amd64 groff-base amd64 1.22.3-4 [1143 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-1 [24.9 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main amd64 libmagic1 amd64 1:5.25-2ubuntu1 [216 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main amd64 file amd64 1:5.25-2ubuntu1 [21.2 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext-base amd64 0.19.4-1ubuntu3 [48.3 kB] Get:23 http://ftpmaster.internal/ubuntu xenial-proposed/main amd64 libglib2.0-0 amd64 2.47.3-3 [1114 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main amd64 libicu55 amd64 55.1-6ubuntu1 [7643 kB] Get:25 http://ftpmaster.internal/ubuntu xenial/main amd64 libxml2 amd64 2.9.2+zdfsg1-4ubuntu1 [695 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/main amd64 libcroco3 amd64 0.6.9-1 [82.0 kB] Get:27 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext amd64 0.19.4-1ubuntu3 [857 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu xenial/main amd64 po-debconf all 1.0.18 [234 kB] Get:30 http://ftpmaster.internal/ubuntu xenial/main amd64 libarchive-zip-perl all 1.53-1 [87.0 kB] Get:31 http://ftpmaster.internal/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:32 http://ftpmaster.internal/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:33 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.014-1 [5596 B] Get:34 http://ftpmaster.internal/ubuntu xenial/main amd64 debhelper all 9.20151126ubuntu1 [741 kB] Get:35 http://ftpmaster.internal/ubuntu xenial/main amd64 help2man amd64 1.47.3 [111 kB] Get:36 http://ftpmaster.internal/ubuntu xenial/main amd64 python3-pkg-resources all 18.4-2 [41.3 kB] Get:37 http://ftpmaster.internal/ubuntu xenial/main amd64 python3-nose all 1.3.6-1 [116 kB] Get:38 http://ftpmaster.internal/ubuntu xenial/main amd64 python3-setuptools all 18.4-2 [89.1 kB] Get:39 http://ftpmaster.internal/ubuntu xenial/universe amd64 samtools amd64 0.1.19-1ubuntu1 [562 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 2s (8917 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11713 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.1-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.1-1) ... Selecting previously unselected package libpython3.5-minimal:amd64. 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Processing triggers for libc-bin (2.21-0ubuntu4) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-33-generic amd64 (x86_64) Toolchain package versions: binutils_2.25.90.20151125-2ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-27ubuntu1 gcc-5_5.2.1-27ubuntu1 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 linux-libc-dev_4.2.0-19.23 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.3 apt-transport-https_1.1.3 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151125-2ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-13ubuntu8 cpp-5_5.2.1-27ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151126ubuntu1 debianutils_4.5.1 dh-python_2.20151103ubuntu1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-13ubuntu8 g++-5_5.2.1-27ubuntu1 gcc_4:5.2.1-13ubuntu8 gcc-5_5.2.1-27ubuntu1 gcc-5-base_5.2.1-27ubuntu1 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 help2man_1.47.3 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu8 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.1.3 libarchive-zip-perl_1.53-1 libasan2_5.2.1-27ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-27ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-27ubuntu1 libcilkrts5_5.2.1-27ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.9-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.4-1ubuntu2 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.3ubuntu1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.2.1-27ubuntu1 libgcc1_1:5.2.1-27ubuntu1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.2.1-27ubuntu1 libgpg-error0_1.20-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libisl13_0.14-2 libisl15_0.15-3 libitm1_5.2.1-27ubuntu1 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-8 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblocale-gettext-perl_1.07-1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.2.1-27ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libmpx0_5.2.1-27ubuntu1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7.1ubuntu1 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_1:3.3.9-1ubuntu8 libpython3-stdlib_3.5.0-2 libpython3.5-minimal_3.5.1~rc1-2ubuntu1 libpython3.5-stdlib_3.5.1~rc1-2ubuntu1 libquadmath0_5.2.1-27ubuntu1 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2d-0ubuntu2 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 libsystemd0_228-2ubuntu1 libtasn1-6_4.7-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libtsan0_5.2.1-27ubuntu1 libubsan0_5.2.1-27ubuntu1 libudev1_228-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu1 linux-libc-dev_4.2.0-19.23 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu2 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_122 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 python3_3.5.0-2 python3-minimal_3.5.0-2 python3-nose_1.3.6-1 python3-pkg-resources_18.4-2 python3-setuptools_18.4-2 python3.5_3.5.1~rc1-2ubuntu1 python3.5-minimal_3.5.1~rc1-2ubuntu1 readline-common_6.3-8ubuntu1 samtools_0.1.19-1ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastaq-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu1 systemd-sysv_228-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu1 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Mon Nov 30 19:28:12 2015 UTC using RSA key ID 04A3610B gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./fastaq_3.11.0-1.dsc dpkg-source: info: extracting fastaq in fastaq-3.11.0 dpkg-source: info: unpacking fastaq_3.11.0.orig.tar.gz dpkg-source: info: unpacking fastaq_3.11.0-1.debian.tar.xz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package fastaq dpkg-buildpackage: source version 3.11.0-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build fastaq-3.11.0 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' rm -rf build .pybuild doc pyfastaq.egg-info find . -name __pycache__ | xargs rm -rf rm -rf /«PKGBUILDDIR»/debian/man make[1]: Leaving directory '/«PKGBUILDDIR»' dh_clean -O--buildsystem=pybuild rm -f debian/fastaq.substvars rm -f debian/fastaq.*.debhelper rm -rf debian/fastaq/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure --test-nose -i python{version} -p 3.5 --dir . I: pybuild base:184: python3.5 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/«PKGBUILDDIR»' dh_python3 D: dh_python3 dh_python3:149: version: 2.20151103ubuntu1 D: dh_python3 dh_python3:150: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:151: options: {'requires': None, 'shebang': None, 'suggests': None, 'vrange': None, 'O': None, 'guess_deps': True, 'ignore_shebangs': False, 'regexpr': None, 'package': None, 'arch': None, 'depends': None, 'no_shebang_rewrite': False, 'clean_dbg_pkg': True, 'verbose': False, 'recommends': None, 'no_package': None, 'no_ext_rename': False, 'compile_all': False, 'skip_private': False} D: dh_python3 dh_python3:152: args: [] D: dh_python3 dh_python3:154: supported Python versions: 3.4,3.5 (default=3.5) D: dh_python3 debhelper:117: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:171: processing package fastaq... D: dh_python3 fs:249: package fastaq details = {'requires.txt': set(), 'shebangs': set(), 'private_dirs': {}, 'public_vers': set(), 'ext_no_version': set(), 'ext_vers': set(), 'egg-info': set(), 'compile': False, 'nsp.txt': set()} D: dh_python3 depends:107: generating dependencies for package fastaq D: dh_python3 depends:249: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build --test-nose -i python{version} -p 3.5 --dir . I: pybuild base:184: /usr/bin/python3 setup.py build running build running build_py creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/caf.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/genetic_codes.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/common.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/intervals.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/utils.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/sequences.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/tasks.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq creating /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/split_by_base_count.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/version.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/capillary_to_pairs.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/chunker.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/merge.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_unique_by_id.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/translate.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_fake_qual.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/enumerate_names.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_boulderio.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/filter.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/trim_contigs.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_fasta.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.5 copying and adjusting scripts/fastaq -> build/scripts-3.5 changing mode of build/scripts-3.5/fastaq from 664 to 775 mkdir /«PKGBUILDDIR»/doc cd /«PKGBUILDDIR»/doc make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-nose -i python{version} -p 3.5 --dir . I: pybuild base:184: cd /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose ---------------------------------------------------------------------- Ran 0 tests in 0.030s OK fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f debian/fastaq.substvars rm -f debian/fastaq.*.debhelper rm -rf debian/fastaq/ dh_auto_install -O--buildsystem=pybuild install -d debian/fastaq pybuild --install --test-nose -i python{version} -p 3.5 --dir . --dest-dir /«PKGBUILDDIR»/debian/fastaq I: pybuild base:184: /usr/bin/python3 setup.py install --root /«PKGBUILDDIR»/debian/fastaq running install running build running build_py running build_scripts running install_lib creating /«PKGBUILDDIR»/debian/fastaq/usr creating /«PKGBUILDDIR»/debian/fastaq/usr/lib creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5 creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/caf.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/genetic_codes.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/common.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/split_by_base_count.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/version.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/reverse_complement.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/fasta_to_fastq.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_random_subset.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/replace_bases.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/strip_illumina_suffix.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/count_sequences.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/capillary_to_pairs.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/chunker.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/sequence_trim.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/add_indels.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/deinterleave.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/search_for_seq.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_orfs_gff.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/merge.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_perfect_reads.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_unique_by_id.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/__init__.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/translate.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_fake_qual.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_mira_xml.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/get_ids.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/enumerate_names.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_boulderio.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/sort_by_size.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/trim_Ns_at_end.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/interleave.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/scaffolds_to_contigs.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/filter.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/caf_to_fastq.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_tiling_bam.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/trim_contigs.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/expand_nucleotides.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/trim_ends.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/make_random_contigs.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_fasta.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/__pycache__/__init__.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/intervals.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/utils.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__init__.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/sequences.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq creating /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/utils.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/tasks.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/genetic_codes.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/__init__.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/intervals.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/sequences.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/common.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/caf.cpython-35.pyc -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/pyfastaq/tasks.py -> /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/version.py to version.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/merge.py to merge.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/translate.py to translate.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/filter.py to filter.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-35.pyc byte-compiling /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-35.pyc running install_egg_info running egg_info creating pyfastaq.egg-info writing pyfastaq.egg-info/PKG-INFO writing dependency_links to pyfastaq.egg-info/dependency_links.txt writing top-level names to pyfastaq.egg-info/top_level.txt writing manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyfastaq.egg-info/SOURCES.txt' Copying pyfastaq.egg-info to /«PKGBUILDDIR»/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq-3.11.0.egg-info Skipping SOURCES.txt running install_scripts creating /«PKGBUILDDIR»/debian/fastaq/usr/bin copying build/scripts-3.5/fastaq -> /«PKGBUILDDIR»/debian/fastaq/usr/bin changing mode of /«PKGBUILDDIR»/debian/fastaq/usr/bin/fastaq to 775 dh_installdocs -O--buildsystem=pybuild install -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/fastaq/usr/share/doc/fastaq/changelog.Debian debian/rules override_dh_installman make[1]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/man PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \ -n 'FASTA and FASTQ file manipulation tools' \ --no-discard-stderr \ --version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1 scripts/fastaq 2>&1 | tail -n +13 | debian/make_man dh_installman -- install -d debian/fastaq/usr/share/man/man1/ install -p -m0644 debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 install -p -m0644 debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 install -p -m0644 debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 install -p -m0644 debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 install -p -m0644 debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 install -p -m0644 debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 install -p -m0644 debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 install -p -m0644 debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 install -p -m0644 debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 install -p -m0644 debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 install -p -m0644 debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 install -p -m0644 debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 install -p -m0644 debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 install -p -m0644 debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 install -p -m0644 debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 install -p -m0644 debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 install -p -m0644 debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 install -p -m0644 debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 install -p -m0644 debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 install -p -m0644 debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 install -p -m0644 debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 install -p -m0644 debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 install -p -m0644 debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 install -p -m0644 debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 install -p -m0644 debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 install -p -m0644 debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 install -p -m0644 debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 install -p -m0644 debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 install -p -m0644 debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 install -p -m0644 debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 install -p -m0644 debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 install -p -m0644 debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 install -p -m0644 debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 install -p -m0644 debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 install -p -m0644 debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 install -p -m0644 debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -p -m0644 debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -p -m0644 debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 man --recode UTF-8 ./fastaq\-sequence_trim\.1 > fastaq\-sequence_trim\.1\.new chmod 644 fastaq-sequence_trim.1.new mv -f fastaq-sequence_trim.1.new fastaq-sequence_trim.1 man --recode UTF-8 ./fastaq\-to_perfect_reads\.1 > fastaq\-to_perfect_reads\.1\.new chmod 644 fastaq-to_perfect_reads.1.new mv -f fastaq-to_perfect_reads.1.new fastaq-to_perfect_reads.1 man --recode UTF-8 ./fastaq\-to_boulderio\.1 > fastaq\-to_boulderio\.1\.new chmod 644 fastaq-to_boulderio.1.new mv -f fastaq-to_boulderio.1.new fastaq-to_boulderio.1 man --recode UTF-8 ./fastaq\-search_for_seq\.1 > fastaq\-search_for_seq\.1\.new chmod 644 fastaq-search_for_seq.1.new mv -f fastaq-search_for_seq.1.new fastaq-search_for_seq.1 man --recode UTF-8 ./fastaq\-scaffolds_to_contigs\.1 > fastaq\-scaffolds_to_contigs\.1\.new chmod 644 fastaq-scaffolds_to_contigs.1.new mv -f fastaq-scaffolds_to_contigs.1.new fastaq-scaffolds_to_contigs.1 man --recode UTF-8 ./fastaq\-expand_nucleotides\.1 > fastaq\-expand_nucleotides\.1\.new chmod 644 fastaq-expand_nucleotides.1.new mv -f fastaq-expand_nucleotides.1.new fastaq-expand_nucleotides.1 man --recode UTF-8 ./fastaq\-version\.1 > fastaq\-version\.1\.new chmod 644 fastaq-version.1.new mv -f fastaq-version.1.new fastaq-version.1 man --recode UTF-8 ./fastaq\-merge\.1 > fastaq\-merge\.1\.new chmod 644 fastaq-merge.1.new mv -f fastaq-merge.1.new fastaq-merge.1 man --recode UTF-8 ./fastaq\-to_orfs_gff\.1 > fastaq\-to_orfs_gff\.1\.new chmod 644 fastaq-to_orfs_gff.1.new mv -f fastaq-to_orfs_gff.1.new fastaq-to_orfs_gff.1 man --recode UTF-8 ./fastaq\-replace_bases\.1 > fastaq\-replace_bases\.1\.new chmod 644 fastaq-replace_bases.1.new mv -f fastaq-replace_bases.1.new fastaq-replace_bases.1 man --recode UTF-8 ./fastaq\-make_random_contigs\.1 > fastaq\-make_random_contigs\.1\.new chmod 644 fastaq-make_random_contigs.1.new mv -f fastaq-make_random_contigs.1.new fastaq-make_random_contigs.1 man --recode UTF-8 ./fastaq\-interleave\.1 > fastaq\-interleave\.1\.new chmod 644 fastaq-interleave.1.new mv -f fastaq-interleave.1.new fastaq-interleave.1 man --recode UTF-8 ./fastaq\-enumerate_names\.1 > fastaq\-enumerate_names\.1\.new chmod 644 fastaq-enumerate_names.1.new mv -f fastaq-enumerate_names.1.new fastaq-enumerate_names.1 man --recode UTF-8 ./fastaq\-to_mira_xml\.1 > fastaq\-to_mira_xml\.1\.new chmod 644 fastaq-to_mira_xml.1.new mv -f fastaq-to_mira_xml.1.new fastaq-to_mira_xml.1 man --recode UTF-8 ./fastaq\-get_ids\.1 > fastaq\-get_ids\.1\.new chmod 644 fastaq-get_ids.1.new mv -f fastaq-get_ids.1.new fastaq-get_ids.1 man --recode UTF-8 ./fastaq\-chunker\.1 > fastaq\-chunker\.1\.new chmod 644 fastaq-chunker.1.new mv -f fastaq-chunker.1.new fastaq-chunker.1 man --recode UTF-8 ./fastaq\-to_unique_by_id\.1 > fastaq\-to_unique_by_id\.1\.new chmod 644 fastaq-to_unique_by_id.1.new mv -f fastaq-to_unique_by_id.1.new fastaq-to_unique_by_id.1 man --recode UTF-8 ./fastaq\-deinterleave\.1 > fastaq\-deinterleave\.1\.new chmod 644 fastaq-deinterleave.1.new mv -f fastaq-deinterleave.1.new fastaq-deinterleave.1 man --recode UTF-8 ./fastaq\-to_fake_qual\.1 > fastaq\-to_fake_qual\.1\.new chmod 644 fastaq-to_fake_qual.1.new mv -f fastaq-to_fake_qual.1.new fastaq-to_fake_qual.1 man --recode UTF-8 ./fastaq\-trim_Ns_at_end\.1 > fastaq\-trim_Ns_at_end\.1\.new chmod 644 fastaq-trim_Ns_at_end.1.new mv -f fastaq-trim_Ns_at_end.1.new fastaq-trim_Ns_at_end.1 man --recode UTF-8 ./fastaq\-caf_to_fastq\.1 > fastaq\-caf_to_fastq\.1\.new chmod 644 fastaq-caf_to_fastq.1.new mv -f fastaq-caf_to_fastq.1.new fastaq-caf_to_fastq.1 man --recode UTF-8 ./fastaq\-capillary_to_pairs\.1 > fastaq\-capillary_to_pairs\.1\.new chmod 644 fastaq-capillary_to_pairs.1.new mv -f fastaq-capillary_to_pairs.1.new fastaq-capillary_to_pairs.1 man --recode UTF-8 ./fastaq\.1 > fastaq\.1\.new chmod 644 fastaq.1.new mv -f fastaq.1.new fastaq.1 man --recode UTF-8 ./fastaq\-trim_ends\.1 > fastaq\-trim_ends\.1\.new chmod 644 fastaq-trim_ends.1.new mv -f fastaq-trim_ends.1.new fastaq-trim_ends.1 man --recode UTF-8 ./fastaq\-filter\.1 > fastaq\-filter\.1\.new chmod 644 fastaq-filter.1.new mv -f fastaq-filter.1.new fastaq-filter.1 man --recode UTF-8 ./fastaq\-count_sequences\.1 > fastaq\-count_sequences\.1\.new chmod 644 fastaq-count_sequences.1.new mv -f fastaq-count_sequences.1.new fastaq-count_sequences.1 man --recode UTF-8 ./fastaq\-to_fasta\.1 > fastaq\-to_fasta\.1\.new chmod 644 fastaq-to_fasta.1.new mv -f fastaq-to_fasta.1.new fastaq-to_fasta.1 man --recode UTF-8 ./fastaq\-add_indels\.1 > fastaq\-add_indels\.1\.new chmod 644 fastaq-add_indels.1.new mv -f fastaq-add_indels.1.new fastaq-add_indels.1 man --recode UTF-8 ./fastaq\-split_by_base_count\.1 > fastaq\-split_by_base_count\.1\.new chmod 644 fastaq-split_by_base_count.1.new mv -f fastaq-split_by_base_count.1.new fastaq-split_by_base_count.1 man --recode UTF-8 ./fastaq\-fasta_to_fastq\.1 > fastaq\-fasta_to_fastq\.1\.new chmod 644 fastaq-fasta_to_fastq.1.new mv -f fastaq-fasta_to_fastq.1.new fastaq-fasta_to_fastq.1 man --recode UTF-8 ./fastaq\-sort_by_size\.1 > fastaq\-sort_by_size\.1\.new chmod 644 fastaq-sort_by_size.1.new mv -f fastaq-sort_by_size.1.new fastaq-sort_by_size.1 man --recode UTF-8 ./fastaq\-to_random_subset\.1 > fastaq\-to_random_subset\.1\.new chmod 644 fastaq-to_random_subset.1.new mv -f fastaq-to_random_subset.1.new fastaq-to_random_subset.1 man --recode UTF-8 ./fastaq\-reverse_complement\.1 > fastaq\-reverse_complement\.1\.new chmod 644 fastaq-reverse_complement.1.new mv -f fastaq-reverse_complement.1.new fastaq-reverse_complement.1 man --recode UTF-8 ./fastaq\-get_seq_flanking_gaps\.1 > fastaq\-get_seq_flanking_gaps\.1\.new chmod 644 fastaq-get_seq_flanking_gaps.1.new mv -f fastaq-get_seq_flanking_gaps.1.new fastaq-get_seq_flanking_gaps.1 man --recode UTF-8 ./fastaq\-to_tiling_bam\.1 > fastaq\-to_tiling_bam\.1\.new chmod 644 fastaq-to_tiling_bam.1.new mv -f fastaq-to_tiling_bam.1.new fastaq-to_tiling_bam.1 man --recode UTF-8 ./fastaq\-strip_illumina_suffix\.1 > fastaq\-strip_illumina_suffix\.1\.new chmod 644 fastaq-strip_illumina_suffix.1.new mv -f fastaq-strip_illumina_suffix.1.new fastaq-strip_illumina_suffix.1 man --recode UTF-8 ./fastaq\-trim_contigs\.1 > fastaq\-trim_contigs\.1\.new chmod 644 fastaq-trim_contigs.1.new mv -f fastaq-trim_contigs.1.new fastaq-trim_contigs.1 man --recode UTF-8 ./fastaq\-translate\.1 > fastaq\-translate\.1\.new chmod 644 fastaq-translate.1.new mv -f fastaq-translate.1.new fastaq-translate.1 make[1]: Leaving directory '/«PKGBUILDDIR»' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:149: version: 2.20151103ubuntu1 D: dh_python3 dh_python3:150: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:151: options: {'clean_dbg_pkg': True, 'depends': None, 'no_shebang_rewrite': False, 'vrange': None, 'O': '--buildsystem=pybuild', 'ignore_shebangs': False, 'recommends': None, 'verbose': False, 'compile_all': False, 'shebang': None, 'no_package': None, 'arch': None, 'package': None, 'suggests': None, 'requires': None, 'no_ext_rename': False, 'regexpr': None, 'guess_deps': True, 'skip_private': False} D: dh_python3 dh_python3:152: args: [] D: dh_python3 dh_python3:154: supported Python versions: 3.4,3.5 (default=3.5) D: dh_python3 debhelper:117: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:171: processing package fastaq... D: dh_python3 fs:47: moving files from debian/fastaq/usr/lib/python3.5/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: package fastaq details = {'ext_no_version': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'requires.txt': set(), 'ext_vers': set(), 'private_dirs': {}, 'egg-info': set(), 'public_vers': {Version('3')}, 'compile': True} D: dh_python3 depends:107: generating dependencies for package fastaq D: dh_python3 depends:249: D={'python3:any', 'python3:any (>= 3.3.2-2~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 cd '/«PKGBUILDDIR»' dh_fixperms -O--buildsystem=pybuild find debian/fastaq -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastaq ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man debian/fastaq/usr/man/ debian/fastaq/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/lib/x86_64-linux-gnu/perl5/5.20 debian/fastaq/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/fastaq -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_installdeb -O--buildsystem=pybuild install -d debian/fastaq/DEBIAN printf '#!/bin/sh set -e ' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chown 0:0 debian/fastaq/DEBIAN/postinst chmod 0755 debian/fastaq/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chown 0:0 debian/fastaq/DEBIAN/prerm chmod 0755 debian/fastaq/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -Pdebian/fastaq dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 debian/fastaq/DEBIAN/control chown 0:0 debian/fastaq/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: dh_gencontrol debug symbol wrapper: packages to act on: dh_gencontrol debug symbol wrapper: ignored packages: dh_md5sums -O--buildsystem=pybuild (cd debian/fastaq >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/fastaq/DEBIAN/md5sums chown 0:0 debian/fastaq/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/fastaq .. INFO: pkgstriptranslations version 122 pkgstriptranslations: processing fastaq (in debian/fastaq); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastaq/DEBIAN/control, package fastaq, directory debian/fastaq pkgstripfiles: PNG optimization for package fastaq took 0 s dpkg-deb: building package 'fastaq' in '../fastaq_3.11.0-1_all.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../fastaq_3.11.0-1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build fastaq-3.11.0 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151130-2310 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ fastaq_3.11.0-1_amd64.changes: ────────────────────────────── Format: 1.8 Date: Mon, 30 Nov 2015 19:06:54 +0000 Source: fastaq Binary: fastaq Architecture: all Version: 3.11.0-1 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.11.0-1) unstable; urgency=medium . * New upstream version. * Add basic autopkgtests. Checksums-Sha1: 381c57226a47348ad9368b5cd18667296bf7346e 45460 fastaq_3.11.0-1_all.deb Checksums-Sha256: b8f4180eef8415db46b90062a6c30a05084250629299e5417a4bf8e3b2150429 45460 fastaq_3.11.0-1_all.deb Files: 735e10075843ae29e5c7c11bba2573d5 45460 science optional fastaq_3.11.0-1_all.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ fastaq_3.11.0-1_all.deb ─────────────────────── new debian package, version 2.0. size 45460 bytes: control archive=3623 bytes. 627 bytes, 18 lines control 7887 bytes, 90 lines md5sums 156 bytes, 9 lines * postinst #!/bin/sh 385 bytes, 12 lines * prerm #!/bin/sh Package: fastaq Version: 3.11.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 187 Depends: python3:any (>= 3.3.2-2~) Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/Fastaq Description: FASTA and FASTQ file manipulation tools A collection of scripts that perform useful and common FASTA/FASTQ manipulation tasks. . All scripts automatically detect whether the input is a FASTA or FASTQ file. . Input and output files can be gzipped. drwxr-xr-x root/root 0 2015-11-30 23:10 ./ drwxr-xr-x root/root 0 2015-11-30 23:10 ./usr/ drwxr-xr-x root/root 0 2015-11-30 23:10 ./usr/bin/ -rwxr-xr-x root/root 4024 2015-11-30 23:10 ./usr/bin/fastaq drwxr-xr-x root/root 0 2015-11-30 23:10 ./usr/lib/ drwxr-xr-x root/root 0 2015-11-30 23:10 ./usr/lib/python3/ drwxr-xr-x root/root 0 2015-11-30 23:10 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2015-11-30 23:10 ./usr/lib/python3/dist-packages/pyfastaq-3.11.0.egg-info/ -rw-r--r-- root/root 529 2015-11-30 23:10 ./usr/lib/python3/dist-packages/pyfastaq-3.11.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2015-11-30 23:10 ./usr/lib/python3/dist-packages/pyfastaq-3.11.0.egg-info/dependency_links.txt -rw-r--r-- root/root 9 2015-11-30 23:10 ./usr/lib/python3/dist-packages/pyfastaq-3.11.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2015-11-30 23:10 ./usr/lib/python3/dist-packages/pyfastaq/ -rw-r--r-- root/root 157 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/__init__.py -rw-r--r-- root/root 2090 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/caf.py -rw-r--r-- root/root 19 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/common.py -rw-r--r-- root/root 2546 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/genetic_codes.py -rw-r--r-- root/root 3790 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/intervals.py drwxr-xr-x root/root 0 2015-11-30 23:10 ./usr/lib/python3/dist-packages/pyfastaq/runners/ -rw-r--r-- root/root 0 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/runners/__init__.py -rw-r--r-- root/root 4215 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/runners/add_indels.py -rw-r--r-- root/root 894 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/runners/caf_to_fastq.py -rw-r--r-- root/root 714 2015-11-30 14:09 ./usr/lib/python3/dist-packages/pyfastaq/runners/capillary_to_pairs.py -rw-r--r-- root/root 1544 2015-11-30 14:09 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└──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 2672 Build-Time: 19 Distribution: xenial-proposed Host Architecture: amd64 Install-Time: 20 Job: fastaq_3.11.0-1.dsc Machine Architecture: amd64 Package: fastaq Package-Time: 41 Source-Version: 3.11.0-1 Space: 2672 Status: successful Version: 3.11.0-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151130-2310 Build needed 00:00:41, 2672k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8360103'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8360103/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8360103'] Unmounting chroot for build PACKAGEBUILD-8360103... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8360103'] Removing build PACKAGEBUILD-8360103