RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-54 4.4.0-45-generic #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.2 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.5. Syncing the system clock with the buildd NTP service... 2 Nov 02:38:40 ntpdate[1722]: adjust time server 10.211.37.1 offset 0.014265 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11116697', '/home/buildd/filecache-default/94f0b0f826e99ad354ce9a7a99ba3c310ddcc327'] Unpacking chroot for build PACKAGEBUILD-11116697 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11116697'] Mounting chroot for build PACKAGEBUILD-11116697 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11116697', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11116697 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11116697', 'amd64'] Updating debian chroot for build PACKAGEBUILD-11116697 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [92.1 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [95.6 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 Packages [1224 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [583 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe amd64 Packages [7745 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4486 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 Packages [55.6 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [30.4 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe amd64 Packages [209 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [88.1 kB] Fetched 14.9 MB in 4s (3320 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser base-files binutils cpp-6 dmsetup g++-6 gcc-6 gcc-6-base libapparmor1 libasan3 libasn1-8-heimdal libatomic1 libcc1-0 libcilkrts5 libdevmapper1.02.1 libgcc-6-dev libgcc1 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libldap-2.4-2 liblsan0 liblzma5 libmpx2 libquadmath0 libroken18-heimdal libstdc++-6-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 libwind0-heimdal linux-libc-dev perl perl-base systemd systemd-sysv tzdata ubuntu-keyring xz-utils 46 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 39.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main amd64 base-files amd64 9.6ubuntu6 [55.8 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main amd64 perl-modules-5.24 all 5.24.1~rc3-3 [2661 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main amd64 libperl5.24 amd64 5.24.1~rc3-3 [3466 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main amd64 perl amd64 5.24.1~rc3-3 [237 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 perl-base amd64 5.24.1~rc3-3 [1341 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main amd64 libapparmor1 amd64 2.10.95-4ubuntu5.2 [30.2 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main amd64 liblzma5 amd64 5.2.2-1.2 [91.0 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main amd64 adduser all 3.113+nmu3ubuntu5 [161 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main amd64 systemd amd64 231-10 [2274 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main amd64 libsystemd0 amd64 231-10 [211 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main amd64 systemd-sysv amd64 231-10 [14.3 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main amd64 libquadmath0 amd64 6.2.0-10ubuntu1 [132 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main amd64 libitm1 amd64 6.2.0-10ubuntu1 [27.9 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main amd64 libcc1-0 amd64 6.2.0-10ubuntu1 [31.1 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main amd64 libgomp1 amd64 6.2.0-10ubuntu1 [73.9 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main amd64 libatomic1 amd64 6.2.0-10ubuntu1 [9144 B] Get:17 http://ftpmaster.internal/ubuntu zesty/main amd64 libasan3 amd64 6.2.0-10ubuntu1 [307 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main amd64 liblsan0 amd64 6.2.0-10ubuntu1 [117 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main amd64 libtsan0 amd64 6.2.0-10ubuntu1 [260 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main amd64 libubsan0 amd64 6.2.0-10ubuntu1 [108 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main amd64 libcilkrts5 amd64 6.2.0-10ubuntu1 [40.8 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main amd64 libmpx2 amd64 6.2.0-10ubuntu1 [11.4 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6-base amd64 6.2.0-10ubuntu1 [17.3 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++6 amd64 6.2.0-10ubuntu1 [400 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main amd64 g++-6 amd64 6.2.0-10ubuntu1 [7386 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++-6-dev amd64 6.2.0-10ubuntu1 [1398 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc-6-dev amd64 6.2.0-10ubuntu1 [2308 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6 amd64 6.2.0-10ubuntu1 [7150 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main amd64 cpp-6 amd64 6.2.0-10ubuntu1 [6601 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc1 amd64 1:6.2.0-10ubuntu1 [38.1 kB] Get:31 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 binutils amd64 2.27-9ubuntu1 [2418 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main amd64 libudev1 amd64 231-10 [57.4 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main amd64 ubuntu-keyring all 2016.10.27 [16.6 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main amd64 tzdata all 2016h-1 [169 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main amd64 libdevmapper1.02.1 amd64 2:1.02.133-1ubuntu1 [164 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main amd64 dmsetup amd64 2:1.02.133-1ubuntu1 [78.8 kB] Get:37 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160703+dfsg-1 [41.0 kB] Get:38 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160703+dfsg-1 [174 kB] Get:39 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160703+dfsg-1 [29.2 kB] Get:40 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160703+dfsg-1 [88.0 kB] Get:41 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160703+dfsg-1 [47.9 kB] Get:42 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160703+dfsg-1 [107 kB] Get:43 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160703+dfsg-1 [202 kB] Get:44 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160703+dfsg-1 [15.1 kB] Get:45 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160703+dfsg-1 [96.7 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu5 [161 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main amd64 xz-utils amd64 5.2.2-1.2 [83.2 kB] Get:48 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 linux-libc-dev amd64 4.8.0-27.29 [856 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 5s (6991 kB/s) (Reading database ... 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Setting up libhcrypto4-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up gcc-6 (6.2.0-10ubuntu1) ... Setting up g++-6 (6.2.0-10ubuntu1) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11116697', 'amd64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=zesty-proposed', '--purge=never', '--nolog', '-A', 'fastaq_3.14.0-1.dsc'] Initiating build PACKAGEBUILD-11116697 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-45-generic #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-54.buildd +==============================================================================+ | fastaq 3.14.0-1 (amd64) 02 Nov 2016 02:39 | +==============================================================================+ Package: fastaq Version: 3.14.0-1 Source Version: 3.14.0-1 Distribution: zesty-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/fastaq-q4RQ2e/fastaq-3.14.0' with '<>' I: NOTICE: Log filtering will replace 'build/fastaq-q4RQ2e' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11116697/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fastaq_3.14.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-7ziakZ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-7ziakZ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-7ziakZ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-7ziakZ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-7ziakZ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-7ziakZ/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (166 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-7ziakZ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: debhelper (>= 9), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-nose, samtools, help2man Filtered Build-Depends: debhelper (>= 9), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-nose, samtools, help2man dpkg-deb: building package 'sbuild-build-depends-fastaq-dummy' in '/<>/resolver-ik7DNh/apt_archive/sbuild-build-depends-fastaq-dummy.deb'. Ign:1 copy:/<>/resolver-ik7DNh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ik7DNh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ik7DNh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ik7DNh/apt_archive ./ Sources [253 B] Get:5 copy:/<>/resolver-ik7DNh/apt_archive ./ Packages [573 B] Fetched 2945 B in 0s (197 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install fastaq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libhts1 libicu57 liblocale-gettext-perl libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3-nose python3-pkg-resources python3-setuptools python3.5 python3.5-minimal samtools Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-nose-doc python-setuptools-doc python3.5-venv python3.5-doc binfmt-support Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl python The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libhts1 libicu57 liblocale-gettext-perl libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3-nose python3-pkg-resources python3-setuptools python3.5 python3.5-minimal samtools sbuild-build-depends-fastaq-dummy 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 22.1 MB of archives. After this operation, 91.8 MB of additional disk space will be used. 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Setting up libxml2:amd64 (2.9.4+dfsg1-2) ... Setting up libmagic1:amd64 (1:5.28-2ubuntu1) ... Setting up libcroco3:amd64 (0.6.11-1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up liblocale-gettext-perl (1.07-3build1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up samtools (1.3.1-2) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up libpython3.5-stdlib:amd64 (3.5.2-6) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.4) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-1) ... Setting up python3.5 (3.5.2-6) ... Setting up libpython3-stdlib:amd64 (3.5.1-4) ... Setting up po-debconf (1.0.19) ... Setting up dh-autoreconf (12) ... Setting up python3 (3.5.1-4) ... Setting up python3-pkg-resources (26.1.1-1) ... Setting up python3-nose (1.3.7-2) ... Setting up python3-setuptools (26.1.1-1) ... Setting up dh-python (2.20160818) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up sbuild-build-depends-fastaq-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.028-1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-45-generic amd64 (x86_64) Toolchain package versions: binutils_2.27-9ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.0-10ubuntu1 gcc-6_6.2.0-10ubuntu1 libc6-dev_2.24-3ubuntu1 libstdc++-6-dev_6.2.0-10ubuntu1 libstdc++6_6.2.0-10ubuntu1 linux-libc-dev_4.8.0-27.29 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.20-1 apt_1.3.1 apt-transport-https_1.3.1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20160430.1 base-files_9.6ubuntu6 base-passwd_3.5.40 bash_4.3-15ubuntu1 binutils_2.27-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28.2-1ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-6_6.2.0-10ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.028-1 diffutils_1:3.3-3 dmsetup_2:1.02.133-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-6_6.2.0-10ubuntu1 gcc_4:6.1.1-1ubuntu2 gcc-6_6.2.0-10ubuntu1 gcc-6-base_6.2.0-10ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 help2man_1.47.4 hostname_3.18 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-10ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1 libassuan0_2.4.3-1 libatomic1_6.2.0-10ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.28.2-1ubuntu1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-3ubuntu1 libc-dev-bin_2.24-3ubuntu1 libc6_2.24-3ubuntu1 libc6-dev_2.24-3ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.0-10ubuntu1 libcilkrts5_6.2.0-10ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.133-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libexpat1_2.2.0-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.28.2-1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libgcc-6-dev_6.2.0-10ubuntu1 libgcc1_1:6.2.0-10ubuntu1 libgcrypt20_1.7.2-2ubuntu1 libgdbm3_1.8.3-14 libglib2.0-0_2.50.0-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-5ubuntu1 libgomp1_6.2.0-10ubuntu1 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.3+dfsg-2 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhts1_1.3.1-3ubuntu1 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libitm1_6.2.0-10ubuntu1 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.4-4 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblocale-gettext-perl_1.07-3build1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.2.0-10ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic1_1:5.28-2ubuntu1 libmount1_2.28.2-1ubuntu1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libmpx2_6.2.0-10ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libnpth0_1.2-3 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpng16-16_1.6.25-1 libprocps6_2:3.3.12-1ubuntu2 libpython3-stdlib_3.5.1-4 libpython3.5-minimal_3.5.2-6 libpython3.5-stdlib_3.5.2-6 libquadmath0_6.2.0-10ubuntu1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28.2-1ubuntu1 libsqlite3-0_3.14.1-1build1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu9 libstdc++-6-dev_6.2.0-10ubuntu1 libstdc++6_6.2.0-10ubuntu1 libsystemd0_231-10 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libtsan0_6.2.0-10ubuntu1 libubsan0_6.2.0-10ubuntu1 libudev1_231-10 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1ubuntu1 libwind0-heimdal_1.7~git20160703+dfsg-1 libxml2_2.9.4+dfsg1-2 linux-libc-dev_4.8.0-27.29 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.28.2-1ubuntu1 multiarch-support_2.24-3ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu9 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-5 pkg-create-dbgsym_0.72 pkgbinarymangler_131 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python3_3.5.1-4 python3-minimal_3.5.1-4 python3-nose_1.3.7-2 python3-pkg-resources_26.1.1-1 python3-setuptools_26.1.1-1 python3.5_3.5.2-6 python3.5-minimal_3.5.2-6 readline-common_7.0-0ubuntu2 samtools_1.3.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastaq-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 systemd_231-10 systemd-sysv_231-10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 tzdata_2016h-1 ubuntu-keyring_2016.10.27 util-linux_2.28.2-1ubuntu1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Sep 1 12:39:24 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastaq_3.14.0-1.dsc dpkg-source: info: extracting fastaq in fastaq-3.14.0 dpkg-source: info: unpacking fastaq_3.14.0.orig.tar.gz dpkg-source: info: unpacking fastaq_3.14.0-1.debian.tar.xz dpkg-source: info: applying spelling Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.14.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build fastaq-3.14.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf build .pybuild doc pyfastaq.egg-info find . -name __pycache__ | xargs rm -rf rm -rf /<>/debian/man make[1]: Leaving directory '/<>' dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -f debian/fastaq.substvars rm -f debian/fastaq.*.debhelper rm -rf debian/fastaq/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure --test-nose -i python{version} -p 3.5 I: pybuild base:184: python3.5 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_python3 D: dh_python3 dh_python3:158: version: 2.20160818 D: dh_python3 dh_python3:159: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:160: options: {'depends': None, 'no_shebang_rewrite': False, 'suggests': None, 'depends_section': None, 'skip_private': False, 'recommends': None, 'package': None, 'compile_all': False, 'suggests_section': None, 'guess_deps': True, 'clean_dbg_pkg': True, 'ignore_shebangs': False, 'no_package': None, 'regexpr': None, 'requires': None, 'no_ext_rename': False, 'recommends_section': None, 'O': None, 'shebang': None, 'verbose': False, 'arch': None, 'vrange': None} D: dh_python3 dh_python3:161: args: [] D: dh_python3 dh_python3:163: supported Python versions: 3.5 (default=3.5) D: dh_python3 debhelper:153: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:180: processing package fastaq... D: dh_python3 fs:243: package fastaq details = {'ext_no_version': set(), 'egg-info': set(), 'nsp.txt': set(), 'compile': False, 'ext_vers': set(), 'requires.txt': set(), 'private_dirs': {}, 'shebangs': set(), 'public_vers': set()} D: dh_python3 depends:113: generating dependencies for package fastaq D: dh_python3 depends:269: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build --test-nose -i python{version} -p 3.5 I: pybuild base:184: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/tasks.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/intervals.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/__init__.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/utils.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/sequences.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/genetic_codes.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq copying pyfastaq/caf.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq creating /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_unique_by_id.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/trim_contigs.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/split_by_base_count.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/version.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/filter.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/capillary_to_pairs.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/chunker.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/translate.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/merge.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_boulderio.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/acgtn_only.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_fake_qual.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/to_fasta.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/enumerate_names.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.5 copying and adjusting scripts/fastaq -> build/scripts-3.5 changing mode of build/scripts-3.5/fastaq from 664 to 775 mkdir /<>/doc cd /<>/doc make[1]: Leaving directory '/<>' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-nose -i python{version} -p 3.5 I: pybuild base:184: cd /<>/.pybuild/pythonX.Y_3.5/build; python3.5 -m nose ---------------------------------------------------------------------- Ran 0 tests in 0.035s OK fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f debian/fastaq.substvars rm -f debian/fastaq.*.debhelper rm -rf debian/fastaq/ dh_auto_install -O--buildsystem=pybuild install -d debian/fastaq pybuild --install --test-nose -i python{version} -p 3.5 --dest-dir /<>/debian/fastaq I: pybuild base:184: /usr/bin/python3 setup.py install --root /<>/debian/fastaq running install running build running build_py running build_scripts running install_lib creating /<>/debian/fastaq/usr creating /<>/debian/fastaq/usr/lib creating /<>/debian/fastaq/usr/lib/python3.5 creating /<>/debian/fastaq/usr/lib/python3.5/dist-packages creating /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/tasks.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/intervals.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq creating /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_unique_by_id.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/trim_contigs.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_perfect_reads.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/split_by_base_count.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/version.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/filter.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/trim_ends.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/scaffolds_to_contigs.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/count_sequences.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_tiling_bam.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_mira_xml.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/capillary_to_pairs.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/chunker.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/expand_nucleotides.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/add_indels.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_random_subset.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/sort_by_size.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/fasta_to_fastq.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/translate.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/merge.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_boulderio.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/strip_illumina_suffix.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/acgtn_only.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_orfs_gff.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/__init__.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/interleave.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/get_ids.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners creating /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/__pycache__/__init__.cpython-35.pyc -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/sequence_trim.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/deinterleave.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/replace_bases.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/make_random_contigs.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_fake_qual.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/trim_Ns_at_end.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/to_fasta.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/caf_to_fastq.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/enumerate_names.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/reverse_complement.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/runners/search_for_seq.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/__init__.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/utils.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq creating /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/caf.cpython-35.pyc -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/__init__.cpython-35.pyc -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/tasks.cpython-35.pyc -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/intervals.cpython-35.pyc -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/sequences.cpython-35.pyc -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/genetic_codes.cpython-35.pyc -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/__pycache__/utils.cpython-35.pyc -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/sequences.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/genetic_codes.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.5/build/pyfastaq/caf.py -> /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/tasks.py to tasks.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/intervals.py to intervals.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/version.py to version.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/filter.py to filter.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/translate.py to translate.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/merge.py to merge.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/__init__.py to __init__.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/utils.py to utils.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/sequences.py to sequences.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-35.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq/caf.py to caf.cpython-35.pyc running install_egg_info running egg_info creating pyfastaq.egg-info writing dependency_links to pyfastaq.egg-info/dependency_links.txt writing pyfastaq.egg-info/PKG-INFO writing top-level names to pyfastaq.egg-info/top_level.txt writing manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyfastaq.egg-info/SOURCES.txt' Copying pyfastaq.egg-info to /<>/debian/fastaq/usr/lib/python3.5/dist-packages/pyfastaq-3.14.0.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/fastaq/usr/bin copying build/scripts-3.5/fastaq -> /<>/debian/fastaq/usr/bin changing mode of /<>/debian/fastaq/usr/bin/fastaq to 775 dh_installdocs -O--buildsystem=pybuild install -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/fastaq/usr/share/doc/fastaq/changelog.Debian debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \ -n 'FASTA and FASTQ file manipulation tools' \ --no-discard-stderr \ --version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1 scripts/fastaq 2>&1 | tail -n +13 | debian/make_man dh_installman -- install -d debian/fastaq/usr/share/man/man1/ install -p -m0644 debian/man/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 install -p -m0644 debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 install -p -m0644 debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 install -p -m0644 debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 install -p -m0644 debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 install -p -m0644 debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 install -p -m0644 debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 install -p -m0644 debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 install -p -m0644 debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 install -p -m0644 debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 install -p -m0644 debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 install -p -m0644 debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 install -p -m0644 debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 install -p -m0644 debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 install -p -m0644 debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 install -p -m0644 debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 install -p -m0644 debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 install -p -m0644 debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 install -p -m0644 debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 install -p -m0644 debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 install -p -m0644 debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 install -p -m0644 debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 install -p -m0644 debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 install -p -m0644 debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 install -p -m0644 debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 install -p -m0644 debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 install -p -m0644 debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 install -p -m0644 debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 install -p -m0644 debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 install -p -m0644 debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 install -p -m0644 debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 install -p -m0644 debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 install -p -m0644 debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 install -p -m0644 debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 install -p -m0644 debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 install -p -m0644 debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 install -p -m0644 debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -p -m0644 debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -p -m0644 debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 man --recode UTF-8 ./fastaq\-to_boulderio\.1 > fastaq\-to_boulderio\.1\.new chmod 0755 -- fastaq-to_boulderio.1.new chown 0:0 -- fastaq-to_boulderio.1.new mv -f fastaq-to_boulderio.1.new fastaq-to_boulderio.1 man --recode UTF-8 ./fastaq\-to_orfs_gff\.1 > fastaq\-to_orfs_gff\.1\.new chmod 0755 -- fastaq-to_orfs_gff.1.new chown 0:0 -- fastaq-to_orfs_gff.1.new mv -f fastaq-to_orfs_gff.1.new fastaq-to_orfs_gff.1 man --recode UTF-8 ./fastaq\-to_tiling_bam\.1 > fastaq\-to_tiling_bam\.1\.new chmod 0755 -- fastaq-to_tiling_bam.1.new chown 0:0 -- fastaq-to_tiling_bam.1.new mv -f fastaq-to_tiling_bam.1.new fastaq-to_tiling_bam.1 man --recode UTF-8 ./fastaq\-trim_ends\.1 > fastaq\-trim_ends\.1\.new chmod 0755 -- fastaq-trim_ends.1.new chown 0:0 -- fastaq-trim_ends.1.new mv -f fastaq-trim_ends.1.new fastaq-trim_ends.1 man --recode UTF-8 ./fastaq\-search_for_seq\.1 > fastaq\-search_for_seq\.1\.new chmod 0755 -- fastaq-search_for_seq.1.new chown 0:0 -- fastaq-search_for_seq.1.new mv -f fastaq-search_for_seq.1.new fastaq-search_for_seq.1 man --recode UTF-8 ./fastaq\-add_indels\.1 > fastaq\-add_indels\.1\.new chmod 0755 -- fastaq-add_indels.1.new chown 0:0 -- fastaq-add_indels.1.new mv -f fastaq-add_indels.1.new fastaq-add_indels.1 man --recode UTF-8 ./fastaq\-fasta_to_fastq\.1 > fastaq\-fasta_to_fastq\.1\.new chmod 0755 -- fastaq-fasta_to_fastq.1.new chown 0:0 -- fastaq-fasta_to_fastq.1.new mv -f fastaq-fasta_to_fastq.1.new fastaq-fasta_to_fastq.1 man --recode UTF-8 ./fastaq\-interleave\.1 > fastaq\-interleave\.1\.new chmod 0755 -- fastaq-interleave.1.new chown 0:0 -- fastaq-interleave.1.new mv -f fastaq-interleave.1.new fastaq-interleave.1 man --recode UTF-8 ./fastaq\-trim_contigs\.1 > fastaq\-trim_contigs\.1\.new chmod 0755 -- fastaq-trim_contigs.1.new chown 0:0 -- fastaq-trim_contigs.1.new mv -f fastaq-trim_contigs.1.new fastaq-trim_contigs.1 man --recode UTF-8 ./fastaq\-to_random_subset\.1 > fastaq\-to_random_subset\.1\.new chmod 0755 -- fastaq-to_random_subset.1.new chown 0:0 -- fastaq-to_random_subset.1.new mv -f fastaq-to_random_subset.1.new fastaq-to_random_subset.1 man --recode UTF-8 ./fastaq\-trim_Ns_at_end\.1 > fastaq\-trim_Ns_at_end\.1\.new chmod 0755 -- fastaq-trim_Ns_at_end.1.new chown 0:0 -- fastaq-trim_Ns_at_end.1.new mv -f fastaq-trim_Ns_at_end.1.new fastaq-trim_Ns_at_end.1 man --recode UTF-8 ./fastaq\-to_perfect_reads\.1 > fastaq\-to_perfect_reads\.1\.new chmod 0755 -- fastaq-to_perfect_reads.1.new chown 0:0 -- fastaq-to_perfect_reads.1.new mv -f fastaq-to_perfect_reads.1.new fastaq-to_perfect_reads.1 man --recode UTF-8 ./fastaq\-to_unique_by_id\.1 > fastaq\-to_unique_by_id\.1\.new chmod 0755 -- fastaq-to_unique_by_id.1.new chown 0:0 -- fastaq-to_unique_by_id.1.new mv -f fastaq-to_unique_by_id.1.new fastaq-to_unique_by_id.1 man --recode UTF-8 ./fastaq\-translate\.1 > fastaq\-translate\.1\.new chmod 0755 -- fastaq-translate.1.new chown 0:0 -- fastaq-translate.1.new mv -f fastaq-translate.1.new fastaq-translate.1 man --recode UTF-8 ./fastaq\-enumerate_names\.1 > fastaq\-enumerate_names\.1\.new chmod 0755 -- fastaq-enumerate_names.1.new chown 0:0 -- fastaq-enumerate_names.1.new mv -f fastaq-enumerate_names.1.new fastaq-enumerate_names.1 man --recode UTF-8 ./fastaq\-to_fasta\.1 > fastaq\-to_fasta\.1\.new chmod 0755 -- fastaq-to_fasta.1.new chown 0:0 -- fastaq-to_fasta.1.new mv -f fastaq-to_fasta.1.new fastaq-to_fasta.1 man --recode UTF-8 ./fastaq\-get_seq_flanking_gaps\.1 > fastaq\-get_seq_flanking_gaps\.1\.new chmod 0755 -- fastaq-get_seq_flanking_gaps.1.new chown 0:0 -- fastaq-get_seq_flanking_gaps.1.new mv -f fastaq-get_seq_flanking_gaps.1.new fastaq-get_seq_flanking_gaps.1 man --recode UTF-8 ./fastaq\-scaffolds_to_contigs\.1 > fastaq\-scaffolds_to_contigs\.1\.new chmod 0755 -- fastaq-scaffolds_to_contigs.1.new chown 0:0 -- fastaq-scaffolds_to_contigs.1.new mv -f fastaq-scaffolds_to_contigs.1.new fastaq-scaffolds_to_contigs.1 man --recode UTF-8 ./fastaq\-to_fake_qual\.1 > fastaq\-to_fake_qual\.1\.new chmod 0755 -- fastaq-to_fake_qual.1.new chown 0:0 -- fastaq-to_fake_qual.1.new mv -f fastaq-to_fake_qual.1.new fastaq-to_fake_qual.1 man --recode UTF-8 ./fastaq\-merge\.1 > fastaq\-merge\.1\.new chmod 0755 -- fastaq-merge.1.new chown 0:0 -- fastaq-merge.1.new mv -f fastaq-merge.1.new fastaq-merge.1 man --recode UTF-8 ./fastaq\-version\.1 > fastaq\-version\.1\.new chmod 0755 -- fastaq-version.1.new chown 0:0 -- fastaq-version.1.new mv -f fastaq-version.1.new fastaq-version.1 man --recode UTF-8 ./fastaq\-sort_by_size\.1 > fastaq\-sort_by_size\.1\.new chmod 0755 -- fastaq-sort_by_size.1.new chown 0:0 -- fastaq-sort_by_size.1.new mv -f fastaq-sort_by_size.1.new fastaq-sort_by_size.1 man --recode UTF-8 ./fastaq\-split_by_base_count\.1 > fastaq\-split_by_base_count\.1\.new chmod 0755 -- fastaq-split_by_base_count.1.new chown 0:0 -- fastaq-split_by_base_count.1.new mv -f fastaq-split_by_base_count.1.new fastaq-split_by_base_count.1 man --recode UTF-8 ./fastaq\-count_sequences\.1 > fastaq\-count_sequences\.1\.new chmod 0755 -- fastaq-count_sequences.1.new chown 0:0 -- fastaq-count_sequences.1.new mv -f fastaq-count_sequences.1.new fastaq-count_sequences.1 man --recode UTF-8 ./fastaq\-strip_illumina_suffix\.1 > fastaq\-strip_illumina_suffix\.1\.new chmod 0755 -- fastaq-strip_illumina_suffix.1.new chown 0:0 -- fastaq-strip_illumina_suffix.1.new mv -f fastaq-strip_illumina_suffix.1.new fastaq-strip_illumina_suffix.1 man --recode UTF-8 ./fastaq\-chunker\.1 > fastaq\-chunker\.1\.new chmod 0755 -- fastaq-chunker.1.new chown 0:0 -- fastaq-chunker.1.new mv -f fastaq-chunker.1.new fastaq-chunker.1 man --recode UTF-8 ./fastaq\-sequence_trim\.1 > fastaq\-sequence_trim\.1\.new chmod 0755 -- fastaq-sequence_trim.1.new chown 0:0 -- fastaq-sequence_trim.1.new mv -f fastaq-sequence_trim.1.new fastaq-sequence_trim.1 man --recode UTF-8 ./fastaq\-replace_bases\.1 > fastaq\-replace_bases\.1\.new chmod 0755 -- fastaq-replace_bases.1.new chown 0:0 -- fastaq-replace_bases.1.new mv -f fastaq-replace_bases.1.new fastaq-replace_bases.1 man --recode UTF-8 ./fastaq\-acgtn_only\.1 > fastaq\-acgtn_only\.1\.new chmod 0755 -- fastaq-acgtn_only.1.new chown 0:0 -- fastaq-acgtn_only.1.new mv -f fastaq-acgtn_only.1.new fastaq-acgtn_only.1 man --recode UTF-8 ./fastaq\-make_random_contigs\.1 > fastaq\-make_random_contigs\.1\.new chmod 0755 -- fastaq-make_random_contigs.1.new chown 0:0 -- fastaq-make_random_contigs.1.new mv -f fastaq-make_random_contigs.1.new fastaq-make_random_contigs.1 man --recode UTF-8 ./fastaq\-reverse_complement\.1 > fastaq\-reverse_complement\.1\.new chmod 0755 -- fastaq-reverse_complement.1.new chown 0:0 -- fastaq-reverse_complement.1.new mv -f fastaq-reverse_complement.1.new fastaq-reverse_complement.1 man --recode UTF-8 ./fastaq\-expand_nucleotides\.1 > fastaq\-expand_nucleotides\.1\.new chmod 0755 -- fastaq-expand_nucleotides.1.new chown 0:0 -- fastaq-expand_nucleotides.1.new mv -f fastaq-expand_nucleotides.1.new fastaq-expand_nucleotides.1 man --recode UTF-8 ./fastaq\-deinterleave\.1 > fastaq\-deinterleave\.1\.new chmod 0755 -- fastaq-deinterleave.1.new chown 0:0 -- fastaq-deinterleave.1.new mv -f fastaq-deinterleave.1.new fastaq-deinterleave.1 man --recode UTF-8 ./fastaq\-capillary_to_pairs\.1 > fastaq\-capillary_to_pairs\.1\.new chmod 0755 -- fastaq-capillary_to_pairs.1.new chown 0:0 -- fastaq-capillary_to_pairs.1.new mv -f fastaq-capillary_to_pairs.1.new fastaq-capillary_to_pairs.1 man --recode UTF-8 ./fastaq\-filter\.1 > fastaq\-filter\.1\.new chmod 0755 -- fastaq-filter.1.new chown 0:0 -- fastaq-filter.1.new mv -f fastaq-filter.1.new fastaq-filter.1 man --recode UTF-8 ./fastaq\-caf_to_fastq\.1 > fastaq\-caf_to_fastq\.1\.new chmod 0755 -- fastaq-caf_to_fastq.1.new chown 0:0 -- fastaq-caf_to_fastq.1.new mv -f fastaq-caf_to_fastq.1.new fastaq-caf_to_fastq.1 man --recode UTF-8 ./fastaq\-get_ids\.1 > fastaq\-get_ids\.1\.new chmod 0755 -- fastaq-get_ids.1.new chown 0:0 -- fastaq-get_ids.1.new mv -f fastaq-get_ids.1.new fastaq-get_ids.1 man --recode UTF-8 ./fastaq\.1 > fastaq\.1\.new chmod 0755 -- fastaq.1.new chown 0:0 -- fastaq.1.new mv -f fastaq.1.new fastaq.1 man --recode UTF-8 ./fastaq\-to_mira_xml\.1 > fastaq\-to_mira_xml\.1\.new chmod 0755 -- fastaq-to_mira_xml.1.new chown 0:0 -- fastaq-to_mira_xml.1.new mv -f fastaq-to_mira_xml.1.new fastaq-to_mira_xml.1 make[1]: Leaving directory '/<>' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:158: version: 2.20160818 D: dh_python3 dh_python3:159: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:160: options: {'recommends': None, 'skip_private': False, 'regexpr': None, 'shebang': None, 'no_shebang_rewrite': False, 'guess_deps': True, 'depends_section': None, 'package': None, 'no_ext_rename': False, 'suggests_section': None, 'O': '--buildsystem=pybuild', 'depends': None, 'recommends_section': None, 'clean_dbg_pkg': True, 'vrange': None, 'suggests': None, 'verbose': False, 'compile_all': False, 'ignore_shebangs': False, 'no_package': None, 'requires': None, 'arch': None} D: dh_python3 dh_python3:161: args: [] D: dh_python3 dh_python3:163: supported Python versions: 3.5 (default=3.5) D: dh_python3 debhelper:153: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:180: processing package fastaq... D: dh_python3 fs:47: moving files from debian/fastaq/usr/lib/python3.5/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:243: package fastaq details = {'nsp.txt': set(), 'ext_vers': set(), 'shebangs': {/usr/bin/python3}, 'egg-info': set(), 'public_vers': {Version('3')}, 'ext_no_version': set(), 'requires.txt': set(), 'compile': True, 'private_dirs': {}} D: dh_python3 depends:113: generating dependencies for package fastaq D: dh_python3 depends:269: D={'python3:any (>= 3.2~)', 'python3:any (>= 3.3.2-2~)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 cd '/<>' dh_fixperms -O--buildsystem=pybuild find debian/fastaq -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastaq ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/lib/x86_64-linux-gnu/perl5/5.24 debian/fastaq/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/fastaq -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_installdeb -O--buildsystem=pybuild install -d debian/fastaq/DEBIAN printf '#!/bin/sh set -e ' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chmod 0755 -- debian/fastaq/DEBIAN/postinst chown 0:0 -- debian/fastaq/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chmod 0755 -- debian/fastaq/DEBIAN/prerm chown 0:0 -- debian/fastaq/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -Pdebian/fastaq dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 0644 -- debian/fastaq/DEBIAN/control chown 0:0 -- debian/fastaq/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: dh_gencontrol debug symbol wrapper: packages to act on: dh_gencontrol debug symbol wrapper: ignored packages: dh_md5sums -O--buildsystem=pybuild (cd debian/fastaq >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/fastaq/DEBIAN/md5sums chown 0:0 -- debian/fastaq/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/fastaq .. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing fastaq (in debian/fastaq); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastaq/DEBIAN/control, package fastaq, directory debian/fastaq pkgstripfiles: Truncating usr/share/doc/fastaq/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package fastaq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fastaq' in '../fastaq_3.14.0-1_all.deb'. dpkg-genchanges --build=any,all -mLaunchpad Build Daemon >../fastaq_3.14.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build fastaq-3.14.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161102-0240 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fastaq_3.14.0-1_amd64.changes: ------------------------------ Format: 1.8 Date: Thu, 01 Sep 2016 12:22:40 +0000 Source: fastaq Binary: fastaq Architecture: all Version: 3.14.0-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.14.0-1) unstable; urgency=medium . * New upstream release. * Drop obsolete patches. Checksums-Sha1: bfdea5a0894d18006c40009fcf42bf744c318fe7 46530 fastaq_3.14.0-1_all.deb Checksums-Sha256: d422d3b8d1bd27709c2f3e856963ede777d233c74ca502bff16e38cb9834f802 46530 fastaq_3.14.0-1_all.deb Files: bdd27e6f53d6a50ac0db8db5f8e5f1c7 46530 science optional fastaq_3.14.0-1_all.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fastaq_3.14.0-1_all.deb ----------------------- new debian package, version 2.0. size 46530 bytes: control archive=3746 bytes. 770 bytes, 16 lines control 7975 bytes, 91 lines md5sums 165 bytes, 9 lines * postinst #!/bin/sh 387 bytes, 12 lines * prerm #!/bin/sh Package: fastaq Version: 3.14.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 190 Depends: python3:any (>= 3.3.2-2~), python3-pkg-resources, samtools Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/Fastaq Description: FASTA and FASTQ file manipulation tools Fastaq represents a diverse collection of scripts that perform useful and common FASTA/FASTQ manipulation tasks, such as filtering, merging, splitting, sorting, trimming, search/replace, etc. Input and output files can be gzipped (format is automatically detected) and individual Fastaq commands can be piped together. drwxr-xr-x root/root 0 2016-09-01 12:22 ./ drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/ drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/bin/ -rwxr-xr-x root/root 4096 2016-09-01 12:22 ./usr/bin/fastaq drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/lib/ drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/lib/python3/ drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/lib/python3/dist-packages/pyfastaq-3.14.0.egg-info/ -rw-r--r-- root/root 529 2016-09-01 12:22 ./usr/lib/python3/dist-packages/pyfastaq-3.14.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2016-09-01 12:22 ./usr/lib/python3/dist-packages/pyfastaq-3.14.0.egg-info/dependency_links.txt -rw-r--r-- root/root 9 2016-09-01 12:22 ./usr/lib/python3/dist-packages/pyfastaq-3.14.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/lib/python3/dist-packages/pyfastaq/ -rw-r--r-- root/root 284 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/__init__.py -rw-r--r-- root/root 2090 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/caf.py -rw-r--r-- root/root 2546 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/genetic_codes.py -rw-r--r-- root/root 3790 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/intervals.py drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/lib/python3/dist-packages/pyfastaq/runners/ -rw-r--r-- root/root 0 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/__init__.py -rw-r--r-- root/root 463 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/acgtn_only.py -rw-r--r-- root/root 4215 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/add_indels.py -rw-r--r-- root/root 894 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/caf_to_fastq.py -rw-r--r-- root/root 714 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/capillary_to_pairs.py -rw-r--r-- root/root 1544 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/chunker.py -rw-r--r-- root/root 379 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/count_sequences.py -rw-r--r-- root/root 831 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/deinterleave.py -rw-r--r-- root/root 1089 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/enumerate_names.py -rw-r--r-- root/root 609 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/expand_nucleotides.py -rw-r--r-- root/root 587 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/fasta_to_fastq.py -rw-r--r-- root/root 2082 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/filter.py -rw-r--r-- root/root 433 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/get_ids.py -rw-r--r-- root/root 733 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py -rw-r--r-- root/root 871 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/interleave.py -rw-r--r-- root/root 1367 2016-09-01 12:22 ./usr/lib/python3/dist-packages/pyfastaq/runners/make_random_contigs.py -rw-r--r-- root/root 581 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/merge.py -rw-r--r-- root/root 574 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/replace_bases.py -rw-r--r-- root/root 423 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/reverse_complement.py -rw-r--r-- root/root 704 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py -rw-r--r-- root/root 757 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/search_for_seq.py -rw-r--r-- root/root 1495 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/sequence_trim.py -rw-r--r-- root/root 618 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_size.py -rw-r--r-- root/root 939 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/split_by_base_count.py -rw-r--r-- root/root 429 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/strip_illumina_suffix.py -rw-r--r-- root/root 483 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_boulderio.py -rw-r--r-- root/root 596 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_fake_qual.py -rw-r--r-- root/root 1114 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_fasta.py -rw-r--r-- root/root 428 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_mira_xml.py -rw-r--r-- root/root 651 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_orfs_gff.py -rw-r--r-- root/root 4237 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_perfect_reads.py -rw-r--r-- root/root 1606 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_random_subset.py -rw-r--r-- root/root 3207 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_tiling_bam.py -rw-r--r-- root/root 593 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_unique_by_id.py -rw-r--r-- root/root 627 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/translate.py -rw-r--r-- root/root 507 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_Ns_at_end.py -rw-r--r-- root/root 766 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_contigs.py -rw-r--r-- root/root 648 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_ends.py -rw-r--r-- root/root 71 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/runners/version.py -rw-r--r-- root/root 23661 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/sequences.py -rw-r--r-- root/root 28561 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/tasks.py -rw-r--r-- root/root 2277 2016-09-01 12:15 ./usr/lib/python3/dist-packages/pyfastaq/utils.py drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/share/ drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/share/doc/fastaq/ -rw-r--r-- root/root 561 2016-09-01 12:22 ./usr/share/doc/fastaq/changelog.Debian.gz -rw-r--r-- root/root 1093 2015-08-21 08:55 ./usr/share/doc/fastaq/copyright drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/share/man/ drwxr-xr-x root/root 0 2016-09-01 12:22 ./usr/share/man/man1/ -rw-r--r-- root/root 357 2016-09-01 12:22 ./usr/share/man/man1/fastaq-acgtn_only.1.gz -rw-r--r-- root/root 655 2016-09-01 12:22 ./usr/share/man/man1/fastaq-add_indels.1.gz -rw-r--r-- root/root 461 2016-09-01 12:22 ./usr/share/man/man1/fastaq-caf_to_fastq.1.gz -rw-r--r-- root/root 494 2016-09-01 12:22 ./usr/share/man/man1/fastaq-capillary_to_pairs.1.gz -rw-r--r-- root/root 583 2016-09-01 12:22 ./usr/share/man/man1/fastaq-chunker.1.gz -rw-r--r-- root/root 324 2016-09-01 12:22 ./usr/share/man/man1/fastaq-count_sequences.1.gz -rw-r--r-- root/root 465 2016-09-01 12:22 ./usr/share/man/man1/fastaq-deinterleave.1.gz -rw-r--r-- root/root 515 2016-09-01 12:22 ./usr/share/man/man1/fastaq-enumerate_names.1.gz -rw-r--r-- root/root 427 2016-09-01 12:22 ./usr/share/man/man1/fastaq-expand_nucleotides.1.gz -rw-r--r-- root/root 340 2016-09-01 12:22 ./usr/share/man/man1/fastaq-fasta_to_fastq.1.gz -rw-r--r-- root/root 693 2016-09-01 12:22 ./usr/share/man/man1/fastaq-filter.1.gz -rw-r--r-- root/root 326 2016-09-01 12:22 ./usr/share/man/man1/fastaq-get_ids.1.gz -rw-r--r-- root/root 396 2016-09-01 12:22 ./usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.gz -rw-r--r-- root/root 438 2016-09-01 12:22 ./usr/share/man/man1/fastaq-interleave.1.gz -rw-r--r-- root/root 603 2016-09-01 12:22 ./usr/share/man/man1/fastaq-make_random_contigs.1.gz -rw-r--r-- root/root 355 2016-09-01 12:22 ./usr/share/man/man1/fastaq-merge.1.gz -rw-r--r-- root/root 367 2016-09-01 12:22 ./usr/share/man/man1/fastaq-replace_bases.1.gz -rw-r--r-- root/root 326 2016-09-01 12:22 ./usr/share/man/man1/fastaq-reverse_complement.1.gz -rw-r--r-- root/root 422 2016-09-01 12:22 ./usr/share/man/man1/fastaq-scaffolds_to_contigs.1.gz -rw-r--r-- root/root 478 2016-09-01 12:22 ./usr/share/man/man1/fastaq-search_for_seq.1.gz -rw-r--r-- root/root 615 2016-09-01 12:22 ./usr/share/man/man1/fastaq-sequence_trim.1.gz -rw-r--r-- root/root 382 2016-09-01 12:22 ./usr/share/man/man1/fastaq-sort_by_size.1.gz -rw-r--r-- root/root 487 2016-09-01 12:22 ./usr/share/man/man1/fastaq-split_by_base_count.1.gz -rw-r--r-- root/root 365 2016-09-01 12:22 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./usr/share/man/man1/fastaq-trim_Ns_at_end.1.gz -rw-r--r-- root/root 467 2016-09-01 12:22 ./usr/share/man/man1/fastaq-trim_contigs.1.gz -rw-r--r-- root/root 371 2016-09-01 12:22 ./usr/share/man/man1/fastaq-trim_ends.1.gz -rw-r--r-- root/root 193 2016-09-01 12:22 ./usr/share/man/man1/fastaq-version.1.gz -rw-r--r-- root/root 1413 2016-09-01 12:22 ./usr/share/man/man1/fastaq.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 2740 Build-Time: 26 Distribution: zesty-proposed Host Architecture: amd64 Install-Time: 22 Job: fastaq_3.14.0-1.dsc Machine Architecture: amd64 Package: fastaq Package-Time: 50 Source-Version: 3.14.0-1 Space: 2740 Status: successful Version: 3.14.0-1 -------------------------------------------------------------------------------- Finished at 20161102-0240 Build needed 00:00:50, 2740k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11116697'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11116697/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11116697'] Unmounting chroot for build PACKAGEBUILD-11116697... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11116697'] Removing build PACKAGEBUILD-11116697