RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-036 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Dec 05:07:22 ntpdate[1828]: adjust time server 10.211.37.1 offset -0.005581 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13817562 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-13817562 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13817562 Starting target for build PACKAGEBUILD-13817562 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13817562 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13817562 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13817562 Updating target for build PACKAGEBUILD-13817562 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1018 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [522 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8320 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4890 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [46.7 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [23.8 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [143 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [81.7 kB] Fetched 15.5 MB in 5s (2949 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libidn2-0 libip4tc0 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpx2 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 linux-libc-dev mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 101 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 62.1 MB of archives. After this operation, 726 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdutils amd64 1:2.30.2-0.1ubuntu1 [60.1 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 coreutils amd64 8.26-3ubuntu4 [1213 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 debianutils amd64 4.8.3 [85.8 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg amd64 1.19.0.4ubuntu1 [1145 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6-dev amd64 2.26-0ubuntu2 [2524 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-dev-bin amd64 2.26-0ubuntu2 [69.6 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 linux-libc-dev amd64 4.13.0-18.21 [967 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 libquadmath0 amd64 7.2.0-16ubuntu1 [133 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 libitm1 amd64 7.2.0-16ubuntu1 [27.7 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7-base amd64 7.2.0-16ubuntu1 [18.5 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc1 amd64 1:7.2.0-16ubuntu1 [39.4 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpx2 amd64 7.2.0-16ubuntu1 [11.8 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libgomp1 amd64 7.2.0-16ubuntu1 [76.3 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 libatomic1 amd64 7.2.0-16ubuntu1 [8980 B] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 libasan4 amd64 7.2.0-16ubuntu1 [359 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 liblsan0 amd64 7.2.0-16ubuntu1 [134 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libtsan0 amd64 7.2.0-16ubuntu1 [281 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 libubsan0 amd64 7.2.0-16ubuntu1 [126 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 libcilkrts5 amd64 7.2.0-16ubuntu1 [42.5 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 cpp-7 amd64 7.2.0-16ubuntu1 [6727 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libcc1-0 amd64 7.2.0-16ubuntu1 [38.7 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 g++-7 amd64 7.2.0-16ubuntu1 [7552 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7 amd64 7.2.0-16ubuntu1 [7414 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc-7-dev amd64 7.2.0-16ubuntu1 [2379 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++-7-dev amd64 7.2.0-16ubuntu1 [1455 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++6 amd64 7.2.0-16ubuntu1 [396 kB] Get:28 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1.1 [241 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libbinutils amd64 2.29.1-10ubuntu1 [503 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils amd64 2.29.1-10ubuntu1 [3412 B] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils-common amd64 2.29.1-10ubuntu1 [190 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.29.1-10ubuntu1 [1824 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6 amd64 2.26-0ubuntu2 [2778 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fslibs amd64 1.43.7-1 [157 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fsprogs amd64 1.43.7-1 [498 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 findutils amd64 4.6.0+git+20170828-2 [291 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl-modules-5.26 all 5.26.1-3 [2761 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libperl5.26 amd64 5.26.1-3 [3541 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl amd64 5.26.1-3 [201 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl-base amd64 5.26.1-3 [1389 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 libuuid1 amd64 2.30.2-0.1ubuntu1 [14.8 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 libblkid1 amd64 2.30.2-0.1ubuntu1 [119 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 libsmartcols1 amd64 2.30.2-0.1ubuntu1 [78.8 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 libfdisk1 amd64 2.30.2-0.1ubuntu1 [157 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libpcre3 amd64 2:8.39-8 [229 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 libselinux1 amd64 2.7-2 [68.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 libmount1 amd64 2.30.2-0.1ubuntu1 [131 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 fdisk amd64 2.30.2-0.1ubuntu1 [105 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 util-linux amd64 2.30.2-0.1ubuntu1 [879 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 base-passwd amd64 3.5.44 [47.2 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.26-0ubuntu2 [593 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 sysvinit-utils amd64 2.88dsf-59.10ubuntu1 [18.6 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main amd64 libudev1 amd64 235-3ubuntu2 [54.8 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 libapt-pkg5.0 amd64 1.6~alpha5 [778 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 libgpg-error0 amd64 1.27-5 [36.9 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcrypt20 amd64 1.8.1-4 [417 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.1.15-1ubuntu8 [186 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 apt amd64 1.6~alpha5 [1145 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 debconf all 1.5.65 [124 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 libapparmor1 amd64 2.11.0-2ubuntu18 [28.8 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.2 [13.0 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main amd64 libip4tc0 amd64 1.6.1-2ubuntu2 [19.6 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main amd64 mount amd64 2.30.2-0.1ubuntu1 [110 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd amd64 235-3ubuntu2 [2834 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 libsystemd0 amd64 235-3ubuntu2 [196 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd-sysv amd64 235-3ubuntu2 [13.1 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap-ng0 amd64 0.7.7-3.1 [11.1 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main amd64 libcomerr2 amd64 1.43.7-1 [11.4 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage-common 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http://ftpmaster.internal/ubuntu bionic/main amd64 optipng amd64 0.7.6-1ubuntu1 [83.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.1 MB in 12s (5098 kB/s) (Reading database ... 12676 files and directories currently installed.) 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Setting up gcc-7 (7.2.0-16ubuntu1) ... Setting up g++-7 (7.2.0-16ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.55.1-1ubuntu3) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13817562 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-13817562 --arch=amd64 --dist=bionic-proposed --nolog -A fastaq_3.16.0-1.dsc Initiating build PACKAGEBUILD-13817562 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-036.buildd +==============================================================================+ | fastaq 3.16.0-1 (amd64) 05 Dec 2017 05:08 | +==============================================================================+ Package: fastaq Version: 3.16.0-1 Source Version: 3.16.0-1 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/fastaq-HGZqr5/fastaq-3.16.0' with '<>' I: NOTICE: Log filtering will replace 'build/fastaq-HGZqr5' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13817562/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fastaq_3.16.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-aoMmkL/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-aoMmkL/apt_archive ./ InRelease Get:2 copy:/<>/resolver-aoMmkL/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-aoMmkL/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-aoMmkL/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-aoMmkL/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (146 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-aoMmkL/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12677 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-nose, samtools, help2man Filtered Build-Depends: debhelper (>= 9), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-nose, samtools, help2man dpkg-deb: building package 'sbuild-build-depends-fastaq-dummy' in '/<>/resolver-KnzD4e/apt_archive/sbuild-build-depends-fastaq-dummy.deb'. Ign:1 copy:/<>/resolver-KnzD4e/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KnzD4e/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-KnzD4e/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KnzD4e/apt_archive ./ Sources [253 B] Get:5 copy:/<>/resolver-KnzD4e/apt_archive ./ Packages [572 B] Fetched 2944 B in 0s (134 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install fastaq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libhts2 libicu60 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3-nose python3-pkg-resources python3-setuptools python3.6 python3.6-minimal samtools Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser apparmor libmail-box-perl python3-doc python3-tk python3-venv python-nose-doc python-setuptools-doc python3.6-venv python3.6-doc binfmt-support Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl python cwltool The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libhts2 libicu60 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3-nose python3-pkg-resources python3-setuptools python3.6 python3.6-minimal samtools sbuild-build-depends-fastaq-dummy 0 upgraded, 48 newly installed, 1 to remove and 0 not upgraded. Need to get 22.3 MB of archives. After this operation, 91.9 MB of additional disk space will be used. Get:1 copy:/<>/resolver-KnzD4e/apt_archive ./ sbuild-build-depends-fastaq-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 liblocale-gettext-perl amd64 1.07-3build2 [16.6 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython3.6-minimal amd64 3.6.3-1ubuntu1 [529 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 libexpat1 amd64 2.2.3-2 [81.3 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 python3.6-minimal amd64 3.6.3-1ubuntu1 [1422 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 python3-minimal amd64 3.6.3-2 [23.7 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpdec2 amd64 2.4.2-1 [82.6 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython3.6-stdlib amd64 3.6.3-1ubuntu1 [2115 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 python3.6 amd64 3.6.3-1ubuntu1 [175 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libpython3-stdlib amd64 3.6.3-2 [7204 B] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-python all 2.20170125 [83.7 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 python3 amd64 3.6.3-2 [8772 B] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 groff-base amd64 1.22.3-9 [1144 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 libbsd0 amd64 0.8.6-3 [41.7 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdmainutils amd64 9.0.14ubuntu1 [179 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 man-db amd64 2.7.6.1-4 [898 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic-mgc amd64 1:5.32-1 [184 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic1 amd64 1:5.32-1 [68.4 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 file amd64 1:5.32-1 [22.0 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libglib2.0-0 amd64 2.54.1-1ubuntu1 [1163 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 libicu60 amd64 60.1-1ubuntu2 [8042 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-5.1ubuntu1 [669 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext-base amd64 0.19.8.1-4ubuntu1 [49.4 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 libsigsegv2 amd64 2.11-1 [13.2 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 autoconf all 2.69-11 [322 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 libtool all 2.4.6-2 [194 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-autoreconf all 15 [15.8 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-strip-nondeterminism all 0.040-1 [5196 B] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 libcroco3 amd64 0.6.12-1 [81.3 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext amd64 0.19.8.1-4ubuntu1 [1093 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 po-debconf all 1.0.20 [232 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 debhelper all 10.10.9ubuntu1 [871 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/universe amd64 help2man amd64 1.47.5 [155 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/universe amd64 libhts2 amd64 1.5-4ubuntu1 [288 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 python3-pkg-resources all 38.2.4-1 [99.1 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/universe amd64 python3-nose all 1.3.7-3 [115 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 python3-setuptools all 38.2.4-1 [186 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/universe amd64 samtools amd64 1.5-1build1 [261 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.3 MB in 4s (4558 kB/s) (Reading database ... 12677 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12668 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3build2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3build2) ... Selecting previously unselected package libpython3.6-minimal:amd64. Preparing to unpack .../01-libpython3.6-minimal_3.6.3-1ubuntu1_amd64.deb ... Unpacking libpython3.6-minimal:amd64 (3.6.3-1ubuntu1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../02-libexpat1_2.2.3-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.3-2) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../03-python3.6-minimal_3.6.3-1ubuntu1_amd64.deb ... Unpacking python3.6-minimal (3.6.3-1ubuntu1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../04-python3-minimal_3.6.3-2_amd64.deb ... 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Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.5) ... Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up samtools (1.5-1build1) ... Setting up libtool (2.4.6-2) ... Setting up libpython3-stdlib:amd64 (3.6.3-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (15) ... Setting up python3 (3.6.3-2) ... Setting up python3-pkg-resources (38.2.4-1) ... Setting up python3-nose (1.3.7-3) ... Setting up python3-setuptools (38.2.4-1) ... Setting up dh-python (2.20170125) ... Setting up debhelper (10.10.9ubuntu1) ... Setting up sbuild-build-depends-fastaq-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.040-1) ... (Reading database ... 15759 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic amd64 (x86_64) Toolchain package versions: binutils_2.29.1-10ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-16ubuntu1 gcc-7_7.2.0-16ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 linux-libc-dev_4.13.0-18.21 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-10ubuntu1 binutils-common_2.29.1-10ubuntu1 binutils-x86-64-linux-gnu_2.29.1-10ubuntu1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-16ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.65 debhelper_10.10.9ubuntu1 debianutils_4.8.3 dh-autoreconf_15 dh-python_2.20170125 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.2-0.1ubuntu1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-16ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-16ubuntu1 gcc-7-base_7.2.0-16ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 help2man_1.47.5 hostname_3.18 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-16ubuntu1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.5-1 libatomic1_7.2.0-16ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbinutils_2.29.1-10ubuntu1 libblkid1_2.30.2-0.1ubuntu1 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-16ubuntu1 libcilkrts5_7.2.0-16ubuntu1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3-gnutls_7.55.1-1ubuntu3 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libexpat1_2.2.3-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.2-0.1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-16ubuntu1 libgcc1_1:7.2.0-16ubuntu1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libglib2.0-0_2.54.1-1ubuntu1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-16ubuntu1 libgpg-error0_1.27-5 libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhts2_1.5-4ubuntu1 libhx509-5-heimdal_7.4.0.dfsg.1-2 libicu60_60.1-1ubuntu2 libidn11_1.33-2 libidn2-0_2.0.4-1 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-1 libitm1_7.2.0-16ubuntu1 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblocale-gettext-perl_1.07-3build2 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblsan0_7.2.0-16ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1ubuntu1 libmpc3_1.0.3-2 libmpdec2_2.4.2-1 libmpfr4_3.1.6-1 libmpx2_7.2.0-16ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-8 libperl5.26_5.26.1-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.19.1-4 libpython3-stdlib_3.6.3-2 libpython3.6-minimal_3.6.3-1ubuntu1 libpython3.6-stdlib_3.6.3-1ubuntu1 libquadmath0_7.2.0-16ubuntu1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.2-0.1ubuntu1 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu14 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 libsystemd0_235-3ubuntu2 libtasn1-6_4.12-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-16ubuntu1 libubsan0_7.2.0-16ubuntu1 libudev1_235-3ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1ubuntu1 libwind0-heimdal_7.4.0.dfsg.1-2 libxml2_2.9.4+dfsg1-5.1ubuntu1 linux-libc-dev_4.13.0-18.21 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-4 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.30.2-0.1ubuntu1 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu14 optipng_0.7.6-1ubuntu1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python3_3.6.3-2 python3-minimal_3.6.3-2 python3-nose_1.3.7-3 python3-pkg-resources_38.2.4-1 python3-setuptools_38.2.4-1 python3.6_3.6.3-1ubuntu1 python3.6-minimal_3.6.3-1ubuntu1 readline-common_7.0-0ubuntu2 samtools_1.5-1build1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastaq-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_235-3ubuntu2 systemd-sysv_235-3ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.2-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Dec 4 23:48:56 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastaq_3.16.0-1.dsc dpkg-source: info: extracting fastaq in fastaq-3.16.0 dpkg-source: info: unpacking fastaq_3.16.0.orig.tar.gz dpkg-source: info: unpacking fastaq_3.16.0-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13817562 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13817562 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13817562 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.16.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build fastaq-3.16.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf build .pybuild doc pyfastaq.egg-info find . -name __pycache__ | xargs rm -rf rm -rf /<>/debian/man make[1]: Leaving directory '/<>' dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f debian/fastaq.debhelper.log rm -f -- debian/fastaq.substvars debian/files rm -fr -- debian/fastaq/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure --test-nose -i python{version} -p 3.6 I: pybuild base:184: python3.6 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_python3 D: dh_python3 dh_python3:161: version: 2.20170125 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:166: supported Python versions: 3.6 (default=3.6) D: dh_python3 debhelper:153: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:183: processing package fastaq... D: dh_python3 fs:243: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package fastaq D: dh_python3 depends:272: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build --test-nose -i python{version} -p 3.6 I: pybuild base:184: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq copying pyfastaq/caf.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq copying pyfastaq/utils.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq copying pyfastaq/sequences.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq copying pyfastaq/tasks.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq copying pyfastaq/genetic_codes.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq copying pyfastaq/__init__.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq copying pyfastaq/intervals.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq creating /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_unique_by_id.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/translate.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/acgtn_only.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_boulderio.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/chunker.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/filter.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_fake_qual.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/enumerate_names.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/version.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_fasta.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/sort_by_name.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/split_by_base_count.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/trim_contigs.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/merge.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/capillary_to_pairs.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.6 copying and adjusting scripts/fastaq -> build/scripts-3.6 changing mode of build/scripts-3.6/fastaq from 664 to 775 mkdir /<>/doc cd /<>/doc make[1]: Leaving directory '/<>' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-nose -i python{version} -p 3.6 I: pybuild base:184: cd /<>/.pybuild/pythonX.Y_3.6/build; python3.6 -m nose ---------------------------------------------------------------------- Ran 0 tests in 0.038s OK fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/fastaq.substvars rm -fr -- debian/.debhelper/generated/fastaq/ debian/fastaq/ debian/tmp/ dh_auto_install -O--buildsystem=pybuild install -d debian/fastaq pybuild --install --test-nose -i python{version} -p 3.6 --dest-dir /<>/debian/fastaq I: pybuild base:184: /usr/bin/python3 setup.py install --root /<>/debian/fastaq running install running build running build_py running build_scripts running install_lib creating /<>/debian/fastaq/usr creating /<>/debian/fastaq/usr/lib creating /<>/debian/fastaq/usr/lib/python3.6 creating /<>/debian/fastaq/usr/lib/python3.6/dist-packages creating /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/caf.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/utils.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq creating /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/__pycache__/genetic_codes.cpython-36.pyc -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/__pycache__/intervals.cpython-36.pyc -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/__pycache__/utils.cpython-36.pyc -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/__pycache__/__init__.cpython-36.pyc -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/__pycache__/sequences.cpython-36.pyc -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/__pycache__/tasks.cpython-36.pyc -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/__pycache__/caf.cpython-36.pyc -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/sequences.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/tasks.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/genetic_codes.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq creating /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/trim_ends.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/caf_to_fastq.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_unique_by_id.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/translate.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/replace_bases.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_orfs_gff.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/scaffolds_to_contigs.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/acgtn_only.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners creating /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/__pycache__/__init__.cpython-36.pyc -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/__pycache__ copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/expand_nucleotides.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_mira_xml.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_boulderio.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/chunker.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/filter.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_random_subset.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_fake_qual.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_perfect_reads.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/enumerate_names.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/sequence_trim.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/version.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/add_indels.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/sort_by_size.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/search_for_seq.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/make_random_contigs.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/interleave.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/trim_Ns_at_end.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/deinterleave.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_fasta.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/fasta_to_fastq.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/sort_by_name.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/split_by_base_count.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/trim_contigs.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/merge.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/get_ids.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/to_tiling_bam.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/capillary_to_pairs.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/reverse_complement.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/strip_illumina_suffix.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/count_sequences.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/runners/__init__.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/__init__.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq copying /<>/.pybuild/pythonX.Y_3.6/build/pyfastaq/intervals.py -> /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/caf.py to caf.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/utils.py to utils.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/sequences.py to sequences.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/tasks.py to tasks.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/translate.py to translate.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/filter.py to filter.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/version.py to version.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/merge.py to merge.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/__init__.py to __init__.cpython-36.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq/intervals.py to intervals.cpython-36.pyc running install_egg_info running egg_info creating pyfastaq.egg-info writing pyfastaq.egg-info/PKG-INFO writing dependency_links to pyfastaq.egg-info/dependency_links.txt writing top-level names to pyfastaq.egg-info/top_level.txt writing manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyfastaq.egg-info/SOURCES.txt' Copying pyfastaq.egg-info to /<>/debian/fastaq/usr/lib/python3.6/dist-packages/pyfastaq-3.16.0.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/fastaq/usr/bin copying build/scripts-3.6/fastaq -> /<>/debian/fastaq/usr/bin changing mode of /<>/debian/fastaq/usr/bin/fastaq to 775 dh_installdocs -O--buildsystem=pybuild install -d debian/fastaq/usr/share/doc/fastaq install -d debian/.debhelper/generated/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/fastaq/usr/share/doc/fastaq/changelog.Debian debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \ -n 'FASTA and FASTQ file manipulation tools' \ --no-discard-stderr \ --version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1 scripts/fastaq 2>&1 | tail -n +13 | debian/make_man dh_installman -- install -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 install -p -m0644 ./debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 install -p -m0644 ./debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 install -p -m0644 ./debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 install -p -m0644 ./debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 install -p -m0644 ./debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 install -p -m0644 ./debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 install -p -m0644 ./debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 install -p -m0644 ./debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 install -p -m0644 ./debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 install -p -m0644 ./debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 install -p -m0644 ./debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 install -p -m0644 ./debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 install -p -m0644 ./debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 install -p -m0644 ./debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 install -p -m0644 ./debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 install -p -m0644 ./debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 install -p -m0644 ./debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 install -p -m0644 ./debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 install -p -m0644 ./debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 install -p -m0644 ./debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 install -p -m0644 ./debian/man/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 install -p -m0644 ./debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 install -p -m0644 ./debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 install -p -m0644 ./debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 install -p -m0644 ./debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 install -p -m0644 ./debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 install -p -m0644 ./debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 install -p -m0644 ./debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 install -p -m0644 ./debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 install -p -m0644 ./debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 install -p -m0644 ./debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 install -p -m0644 ./debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 install -p -m0644 ./debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 install -p -m0644 ./debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 install -p -m0644 ./debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 install -p -m0644 ./debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 install -p -m0644 ./debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 > debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 > debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 > debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-merge.1 > debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 > debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 > debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq.1 > debian/fastaq/usr/share/man/man1/fastaq.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 > debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 > debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 > debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 > debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 > debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 > debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 > debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 > debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 > debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-translate.1 > debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-version.1 > debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 > debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 > debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 > debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 > debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 > debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 > debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-filter.1 > debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 > debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 > debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 > debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 > debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 > debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-chunker.1 > debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 > debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 > debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 > debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 > debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-interleave.1 > debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 > debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 > debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 > debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 man -l --recode UTF-8 ./debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 > debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 make[1]: Leaving directory '/<>' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 2.20170125 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:166: supported Python versions: 3.6 (default=3.6) D: dh_python3 debhelper:153: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:183: processing package fastaq... D: dh_python3 fs:47: moving files from debian/fastaq/usr/lib/python3.6/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:243: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package fastaq D: dh_python3 depends:272: D={'python3:any (>= 3.3.2-2~)', 'python3:any (>= 3.2~)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 cd '/<>' dh_fixperms -O--buildsystem=pybuild find debian/fastaq -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastaq ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f -a -true -a ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -d debian/fastaq/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chmod 0755 -- debian/fastaq/DEBIAN/postinst chown 0:0 -- debian/fastaq/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chmod 0755 -- debian/fastaq/DEBIAN/prerm chown 0:0 -- debian/fastaq/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -Pdebian/fastaq -UMulti-Arch chmod 0644 -- debian/fastaq/DEBIAN/control chown 0:0 -- debian/fastaq/DEBIAN/control dh_md5sums -O--buildsystem=pybuild (cd debian/fastaq >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/fastaq/DEBIAN/md5sums chown 0:0 -- debian/fastaq/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/fastaq .. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing fastaq (in debian/fastaq); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastaq/DEBIAN/control, package fastaq, directory debian/fastaq pkgstripfiles: Truncating usr/share/doc/fastaq/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package fastaq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fastaq' in '../fastaq_3.16.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../fastaq_3.16.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build fastaq-3.16.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171205-0509 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fastaq_3.16.0-1_amd64.changes: ------------------------------ Format: 1.8 Date: Mon, 04 Dec 2017 17:53:43 +0100 Source: fastaq Binary: fastaq Architecture: all Version: 3.16.0-1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (3.16.0-1) unstable; urgency=medium . [ Steffen Moeller ] * debian/upstream/metadata: Added references to registries. . [ Sascha Steinbiss ] * New upstream release. * Bump Standards-Version. * Remove unnecessary Testsuite: entry in d/control. Checksums-Sha1: 3bdf1faac7c8d9620016c367a3331387c8843ee7 47104 fastaq_3.16.0-1_all.deb 392d899209fa3fb655bb734ec83f15e7601176f6 6400 fastaq_3.16.0-1_amd64.buildinfo Checksums-Sha256: ef9086000a15362724675735497afaf1be6680b79c09947226705f733cea83fe 47104 fastaq_3.16.0-1_all.deb f68d19eb56e9e4e67b12585406dd698783930b737fe3305f1a6863c113b7832a 6400 fastaq_3.16.0-1_amd64.buildinfo Files: 702b823382cf5ce42eedea9f3d83505c 47104 science optional fastaq_3.16.0-1_all.deb 207f01b3de1469ef2743efa44e9bdd61 6400 science optional fastaq_3.16.0-1_amd64.buildinfo +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fastaq_3.16.0-1_all.deb ----------------------- new debian package, version 2.0. size 47104 bytes: control archive=3580 bytes. 770 bytes, 16 lines control 8150 bytes, 93 lines md5sums 165 bytes, 9 lines * postinst #!/bin/sh 387 bytes, 12 lines * prerm #!/bin/sh Package: fastaq Version: 3.16.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 194 Depends: python3:any (>= 3.3.2-2~), python3-pkg-resources, samtools Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/Fastaq Description: FASTA and FASTQ file manipulation tools Fastaq represents a diverse collection of scripts that perform useful and common FASTA/FASTQ manipulation tasks, such as filtering, merging, splitting, sorting, trimming, search/replace, etc. Input and output files can be gzipped (format is automatically detected) and individual Fastaq commands can be piped together. drwxr-xr-x root/root 0 2017-12-04 16:53 ./ drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/ drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/bin/ -rwxr-xr-x root/root 4178 2017-12-04 16:53 ./usr/bin/fastaq drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/lib/ drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/lib/python3/ drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/lib/python3/dist-packages/pyfastaq-3.16.0.egg-info/ -rw-r--r-- root/root 568 2017-12-04 16:53 ./usr/lib/python3/dist-packages/pyfastaq-3.16.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2017-12-04 16:53 ./usr/lib/python3/dist-packages/pyfastaq-3.16.0.egg-info/dependency_links.txt -rw-r--r-- root/root 9 2017-12-04 16:53 ./usr/lib/python3/dist-packages/pyfastaq-3.16.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/lib/python3/dist-packages/pyfastaq/ -rw-r--r-- root/root 284 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/__init__.py -rw-r--r-- root/root 2090 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/caf.py -rw-r--r-- root/root 2546 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/genetic_codes.py -rw-r--r-- root/root 3790 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/intervals.py drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/lib/python3/dist-packages/pyfastaq/runners/ -rw-r--r-- root/root 0 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/__init__.py -rw-r--r-- root/root 463 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/acgtn_only.py -rw-r--r-- root/root 4215 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/add_indels.py -rw-r--r-- root/root 894 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/caf_to_fastq.py -rw-r--r-- root/root 714 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/capillary_to_pairs.py -rw-r--r-- root/root 1544 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/chunker.py -rw-r--r-- root/root 379 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/count_sequences.py -rw-r--r-- root/root 831 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/deinterleave.py -rw-r--r-- root/root 1089 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/enumerate_names.py -rw-r--r-- root/root 609 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/expand_nucleotides.py -rw-r--r-- root/root 587 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/fasta_to_fastq.py -rw-r--r-- root/root 2082 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/filter.py -rw-r--r-- root/root 433 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/get_ids.py -rw-r--r-- root/root 733 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py -rw-r--r-- root/root 871 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/interleave.py -rw-r--r-- root/root 1367 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/make_random_contigs.py -rw-r--r-- root/root 581 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/merge.py -rw-r--r-- root/root 574 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/replace_bases.py -rw-r--r-- root/root 423 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/reverse_complement.py -rw-r--r-- root/root 704 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py -rw-r--r-- root/root 757 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/search_for_seq.py -rw-r--r-- root/root 1495 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/sequence_trim.py -rw-r--r-- root/root 433 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_name.py -rw-r--r-- root/root 618 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_size.py -rw-r--r-- root/root 939 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/split_by_base_count.py -rw-r--r-- root/root 429 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/strip_illumina_suffix.py -rw-r--r-- root/root 483 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_boulderio.py -rw-r--r-- root/root 596 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_fake_qual.py -rw-r--r-- root/root 1114 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_fasta.py -rw-r--r-- root/root 428 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_mira_xml.py -rw-r--r-- root/root 651 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_orfs_gff.py -rw-r--r-- root/root 4237 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_perfect_reads.py -rw-r--r-- root/root 1606 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_random_subset.py -rw-r--r-- root/root 3207 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_tiling_bam.py -rw-r--r-- root/root 593 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_unique_by_id.py -rw-r--r-- root/root 627 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/translate.py -rw-r--r-- root/root 507 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_Ns_at_end.py -rw-r--r-- root/root 766 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_contigs.py -rw-r--r-- root/root 648 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_ends.py -rw-r--r-- root/root 71 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/runners/version.py -rw-r--r-- root/root 23661 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/sequences.py -rw-r--r-- root/root 29245 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/tasks.py -rw-r--r-- root/root 2277 2017-11-29 11:36 ./usr/lib/python3/dist-packages/pyfastaq/utils.py drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/share/ drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-04 16:53 ./usr/share/doc/fastaq/ -rw-r--r-- root/root 696 2017-12-04 16:53 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 2804 Build-Time: 30 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 21 Job: fastaq_3.16.0-1.dsc Machine Architecture: amd64 Package: fastaq Package-Time: 53 Source-Version: 3.16.0-1 Space: 2804 Status: successful Version: 3.16.0-1 -------------------------------------------------------------------------------- Finished at 20171205-0509 Build needed 00:00:53, 2804k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13817562 Scanning for processes to kill in build PACKAGEBUILD-13817562 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13817562 Stopping target for build PACKAGEBUILD-13817562 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13817562 Removing build PACKAGEBUILD-13817562