https://launchpad.net/ubuntu/+source/fastaq/3.17.0-5/+build/24608205 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-069 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 6 Nov 02:42:00 ntpdate[1755]: adjust time server 10.131.248.1 offset 0.000263 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24608205 --image-type chroot /home/buildd/filecache-default/93056656ffca866e6c2a454f453b424a388b800f Creating target for build PACKAGEBUILD-24608205 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24608205 Starting target for build PACKAGEBUILD-24608205 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24608205 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24608205 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24608205 Updating target for build PACKAGEBUILD-24608205 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main amd64 Packages [1390 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe amd64 Packages [14.5 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5791 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 Packages [222 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [78.2 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 Packages [594 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [237 kB] Fetched 23.7 MB in 2s (10.9 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: apt base-files bash binutils binutils-common binutils-x86-64-linux-gnu cpp-12 fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg6.0 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libctf-nobfd0 libctf0 libfakeroot libgcc-12-dev libgcc-s1 libgnutls30 libgomp1 libgpg-error0 libgprofng0 libidn2-0 libitm1 liblsan0 libp11-kit0 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtsan2 libubsan1 libudev1 linux-libc-dev lto-disabled-list perl perl-base readline-common systemd systemd-sysv tzdata usrmerge zlib1g 66 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 90.6 MB of archives. After this operation, 47.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar/main amd64 libc6-dev amd64 2.36-0ubuntu4 [2088 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main amd64 libc-dev-bin amd64 2.36-0ubuntu4 [20.0 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 linux-libc-dev amd64 5.19.0-23.24 [1345 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main amd64 libcc1-0 amd64 12.2.0-9ubuntu1 [46.4 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main amd64 gcc-12-base amd64 12.2.0-9ubuntu1 [19.5 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main amd64 libgcc-s1 amd64 12.2.0-9ubuntu1 [54.2 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main amd64 libgomp1 amd64 12.2.0-9ubuntu1 [125 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main amd64 libitm1 amd64 12.2.0-9ubuntu1 [29.4 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main amd64 libatomic1 amd64 12.2.0-9ubuntu1 [10.4 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main amd64 libasan8 amd64 12.2.0-9ubuntu1 [2433 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main amd64 liblsan0 amd64 12.2.0-9ubuntu1 [1060 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main amd64 libtsan2 amd64 12.2.0-9ubuntu1 [2456 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main amd64 libubsan1 amd64 12.2.0-9ubuntu1 [969 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main amd64 libquadmath0 amd64 12.2.0-9ubuntu1 [152 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main amd64 g++-12 amd64 12.2.0-9ubuntu1 [12.0 MB] Get:16 http://ftpmaster.internal/ubuntu lunar/main amd64 libstdc++-12-dev amd64 12.2.0-9ubuntu1 [2158 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main amd64 libgcc-12-dev amd64 12.2.0-9ubuntu1 [2577 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main amd64 gcc-12 amd64 12.2.0-9ubuntu1 [21.4 MB] Get:19 http://ftpmaster.internal/ubuntu lunar/main amd64 cpp-12 amd64 12.2.0-9ubuntu1 [10.6 MB] Get:20 http://ftpmaster.internal/ubuntu lunar/main amd64 libstdc++6 amd64 12.2.0-9ubuntu1 [678 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 zlib1g amd64 1:1.2.11.dfsg-4.1ubuntu2 [58.8 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgprofng0 amd64 2.39-8ubuntu2 [897 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf0 amd64 2.39-8ubuntu2 [97.4 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf-nobfd0 amd64 2.39-8ubuntu2 [99.9 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libbinutils amd64 2.39-8ubuntu2 [610 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-common amd64 2.39-8ubuntu2 [233 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils amd64 2.39-8ubuntu2 [3240 B] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.39-8ubuntu2 [2402 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main amd64 libc6 amd64 2.36-0ubuntu4 [3163 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main amd64 base-files amd64 12.3ubuntu1 [73.4 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main amd64 bash amd64 5.2-1ubuntu2 [788 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libperl5.36 amd64 5.36.0-4ubuntu2 [4808 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl amd64 5.36.0-4ubuntu2 [235 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-base amd64 5.36.0-4ubuntu2 [1779 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main amd64 libc-bin amd64 2.36-0ubuntu4 [675 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libapparmor1 amd64 3.0.7-1ubuntu3 [36.8 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcap-ng0 amd64 0.8.3-1build1 [15.2 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libaudit1 amd64 1:3.0.7-1ubuntu2 [45.4 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libseccomp2 amd64 2.5.4-1ubuntu2 [46.2 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libselinux1 amd64 3.4-1build1 [77.9 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main amd64 systemd-sysv amd64 251.4-1ubuntu7 [11.2 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main amd64 systemd amd64 251.4-1ubuntu7 [2808 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main amd64 libsystemd-shared amd64 251.4-1ubuntu7 [1703 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main amd64 libsystemd0 amd64 251.4-1ubuntu7 [323 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main amd64 libudev1 amd64 251.4-1ubuntu7 [79.8 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libapt-pkg6.0 amd64 2.5.4 [902 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgpg-error0 amd64 1.46-1 [68.9 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgv amd64 2.2.40-1ubuntu1 [137 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main amd64 libidn2-0 amd64 2.3.3-1build1 [62.9 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main amd64 libp11-kit0 amd64 0.24.1-1ubuntu2 [246 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main amd64 libgnutls30 amd64 3.7.7-2ubuntu2 [976 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 apt amd64 2.5.4 [1378 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main amd64 libsemanage-common all 3.4-1build1 [9544 B] Get:56 http://ftpmaster.internal/ubuntu lunar/main amd64 libsemanage2 amd64 3.4-1build1 [93.2 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main amd64 usrmerge all 29ubuntu2 [55.8 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main amd64 readline-common all 8.2-1 [55.1 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main amd64 libreadline8 amd64 8.2-1 [150 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main amd64 libsqlite3-0 amd64 3.39.3-1 [655 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main amd64 tzdata all 2022f-0ubuntu1 [400 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main amd64 libpng16-16 amd64 1.6.38-2 [186 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libfakeroot amd64 1.30.1-1ubuntu1 [30.9 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 fakeroot amd64 1.30.1-1ubuntu1 [60.1 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg amd64 2.2.40-1ubuntu1 [523 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgconf amd64 2.2.40-1ubuntu1 [93.8 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg-agent amd64 2.2.40-1ubuntu1 [217 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main amd64 lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 90.6 MB in 1s (132 MB/s) (Reading database ... 13569 files and directories currently installed.) 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Processing triggers for debianutils (5.7-0.3) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24608205 amd64 lunar-proposed -c chroot:build-PACKAGEBUILD-24608205 --arch=amd64 --dist=lunar-proposed --nolog -A fastaq_3.17.0-5.dsc Initiating build PACKAGEBUILD-24608205 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-069.buildd +==============================================================================+ | fastaq 3.17.0-5 (amd64) Sun, 06 Nov 2022 02:42:16 +0000 | +==============================================================================+ Package: fastaq Version: 3.17.0-5 Source Version: 3.17.0-5 Distribution: lunar-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24608205/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/fastaq-bO2ZKv/resolver-jPK42d' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fastaq_3.17.0-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/fastaq-bO2ZKv/fastaq-3.17.0' with '<>' I: NOTICE: Log filtering will replace 'build/fastaq-bO2ZKv' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-pytest, samtools, help2man, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-pytest, samtools, help2man, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [416 B] Get:5 copy:/<>/apt_archive ./ Packages [498 B] Fetched 1871 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu71 libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-attr python3-distutils python3-iniconfig python3-lib2to3 python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pytest python3-setuptools python3-tomli python3.10 python3.10-minimal samtools Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc subversion python-pyparsing-doc python-setuptools-doc python3.10-venv python3.10-doc binfmt-support cwltool Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-pygments The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu71 libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-attr python3-distutils python3-iniconfig python3-lib2to3 python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pytest python3-setuptools python3-tomli python3.10 python3.10-minimal samtools sbuild-build-depends-main-dummy 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded. 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samtools amd64 1.13-4 [520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.8 MB in 0s (136 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:amd64 (0.187-4) ... Setting up gettext (0.21-8) ... Setting up libtool (2.4.7-4) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.49.2) ... Setting up libpython3.10-stdlib:amd64 (3.10.8-1) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up libpython3-stdlib:amd64 (3.10.6-1ubuntu1) ... Setting up python3.10 (3.10.8-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:amd64 (7.86.0-1) ... Setting up python3 (3.10.6-1ubuntu1) ... Setting up man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-pyparsing (3.0.7-2) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.8-1) ... Setting up dh-python (5.20221001) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.1.0-1) ... Setting up libhts3:amd64 (1.13+ds-2build2) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up python3-tomli (2.0.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up samtools (1.13-4) ... Setting up python3-packaging (21.3-1.1) ... Setting up python3-pytest (7.1.2-2ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:07:22 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.0 bash_5.2-1ubuntu2 binutils_2.39-8ubuntu2 binutils-common_2.39-8ubuntu2 binutils-x86-64-linux-gnu_2.39-8ubuntu2 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-9ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.3 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_5.20221001 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-9ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-9ubuntu1 gcc-12-base_12.2.0-9ubuntu1 gettext_0.21-8 gettext-base_0.21-8 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.12-1ubuntu1 help2man_1.49.2 hostname_3.23ubuntu2 init_1.64 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.7-1ubuntu3 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-9ubuntu1 libassuan0_2.5.5-4 libatomic1_12.2.0-9ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39-8ubuntu2 libblkid1_2.38-4ubuntu1 libbrotli1_1.0.9-2build7 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.44-1build3 libcc1-0_12.2.0-9ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2ubuntu1 libctf-nobfd0_2.39-8ubuntu2 libctf0_2.39-8ubuntu2 libcurl3-gnutls_7.86.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdeflate0_1.12-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.9ubuntu1 libdw1_0.187-4 libelf1_0.187-4 libexpat1_2.4.8-2 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-9ubuntu1 libgcc-s1_12.2.0-9ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg1-1ubuntu2 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-9ubuntu1 libgpg-error0_1.46-1 libgprofng0_2.39-8ubuntu2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libhts3_1.13+ds-2build2 libhtscodecs2_1.2.2-1 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.25-1 libitm1_12.2.0-9ubuntu1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3ubuntu1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libldap-2.5-0_2.5.13+dfsg-1ubuntu2 liblocale-gettext-perl_1.07-4build4 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.2.0-9ubuntu1 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpdec3_2.5.1-2build2 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.49.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-2ubuntu1 libpam-modules-bin_1.5.2-2ubuntu1 libpam-runtime_1.5.2-2ubuntu1 libpam0g_1.5.2-2ubuntu1 libpcre2-8-0_10.40-1ubuntu1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5ubuntu1 libperl5.36_5.36.0-4ubuntu2 libpipeline1_1.5.6-2 libpng16-16_1.6.38-2 libprocps8_2:3.3.17-7ubuntu1 libpsl5_0.21.0-1.2build2 libpython3-stdlib_3.10.6-1ubuntu1 libpython3.10-minimal_3.10.8-1 libpython3.10-stdlib_3.10.8-1 libquadmath0_12.2.0-9ubuntu1 libreadline8_8.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg-6ubuntu2 libsasl2-modules-db_2.1.28+dfsg-6ubuntu2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.39.3-1 libss2_1.46.5-2ubuntu2 libssh-4_0.9.6-2build1 libssl3_3.0.5-2ubuntu1 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 libsub-override-perl_0.09-3 libsystemd-shared_251.4-1ubuntu7 libsystemd0_251.4-1ubuntu7 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan2_12.2.0-9ubuntu1 libubsan1_12.2.0-9ubuntu1 libuchardet0_0.0.7-1build2 libudev1_251.4-1ubuntu7 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1build1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.2ubuntu1 lto-disabled-list_35 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.5-2ubuntu1 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.36.0-4ubuntu2 perl-base_5.36.0-4ubuntu2 perl-modules-5.34_5.34.0-5ubuntu1 perl-modules-5.36_5.36.0-4ubuntu2 pinentry-curses_1.2.0-2ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 python3_3.10.6-1ubuntu1 python3-attr_22.1.0-1 python3-distutils_3.10.8-1 python3-iniconfig_1.1.1-2 python3-lib2to3_3.10.8-1 python3-minimal_3.10.6-1ubuntu1 python3-more-itertools_8.10.0-2 python3-packaging_21.3-1.1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0+repack-1 python3-py_1.11.0-1 python3-pyparsing_3.0.7-2 python3-pytest_7.1.2-2ubuntu1 python3-setuptools_59.6.0-1.2 python3-tomli_2.0.1-1 python3.10_3.10.8-1 python3.10-minimal_3.10.8-1 readline-common_8.2-1 rpcsvc-proto_1.4.2-0ubuntu6 samtools_1.13-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.4-1ubuntu7 systemd-sysv_251.4-1ubuntu7 sysvinit-utils_3.04-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022f-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_29ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fastaq Binary: fastaq Architecture: all Version: 3.17.0-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Jorge Soares , Sascha Steinbiss Homepage: https://github.com/sanger-pathogens/Fastaq Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/fastaq Vcs-Git: https://salsa.debian.org/med-team/fastaq.git Testsuite: autopkgtest Testsuite-Triggers: python3, samtools Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-pytest, samtools, help2man Package-List: fastaq deb science optional arch=all Checksums-Sha1: 7f62b54535d50f657173ac52717e048d3c6a06a3 71324 fastaq_3.17.0.orig.tar.gz 53ae89aad6d03d00f6327ec61314731ffc75b5b7 4776 fastaq_3.17.0-5.debian.tar.xz Checksums-Sha256: bb63c03e4bdde92deb43469f8a93a7f440272e47adc8edb9d94cd5fa107fa746 71324 fastaq_3.17.0.orig.tar.gz 908c756e0fac4c323127ed718484d71aa3c9899efe15f2c792e842bad545353d 4776 fastaq_3.17.0-5.debian.tar.xz Files: 4133971445c9c9037bc384d86cdfe4d8 71324 fastaq_3.17.0.orig.tar.gz a04991a36c531f94227ed6815d98d95d 4776 fastaq_3.17.0-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmNBf6YACgkQ6NN64vCf SHKZ3A//dEMDFrPwk+Cl8AT+IFZ3tKG+lVccvodyC29zr8CNIdSoCNCqf43gwn/M l16QeOq2ieXf5t7XuJE80mbDibeNhPs+70G/AbVGW5tG5ornmxMr6P+vS2yzkh57 LQaaOxo5FQ83ZOQEKLbaJfooaR4XCSRSb0Bt8dmwZD9KfziesdPfkBP4VgN4kNHe OdtMf5FeS9fv7jhBHQMdHfsEfRPmJS3i8691cYOg7s+1z7/4sS6ILqgvRcFl63OD 1e3EKO99jl9+TxjcwGu/5VvRj6r5TRwzH1uYWNt41+WBJsBz4ihT3qyv0k1N1I6I bnNy7oqptcjm7thfl7rCLgVNbsnUpeZxuHcGNoBQtjQWafrVtZQS/nxFNekHzaOv rJR9sOeRDY7zWPY3kt3u1LubKcF8tEzy+Q7qD5BL2zvLzp8+Iy40ktzPCP1G/aYv OeosVL46zVq548FF6K7IN4VdR0uIaMk8ob7LN/lOYNOESrExXGo/OQ5Un5GvFzPu ZbupDih8DuTqjJFeJK/hzZj9tvJ6aZDZrjuCj2qB5OAm+SVnX0MoMwMqVy47KyLF 5+4D9DN8KYPlwvBVSPrrWlouDbWEeyoBuSl1FPmBPhQ1+AkrLigEwKnbbnLchv2i FChR7iJOev6pMEcNcTDoJWuessoFeTlpO3pu2Ot09BW3XaqdMRo= =IV8m -----END PGP SIGNATURE----- gpgv: Signature made Sat Oct 8 13:48:22 2022 UTC gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./fastaq_3.17.0-5.dsc dpkg-source: info: extracting fastaq in /<> dpkg-source: info: unpacking fastaq_3.17.0.orig.tar.gz dpkg-source: info: unpacking fastaq_3.17.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying tests Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24608205 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24608205 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24608205 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.17.0-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf build .pybuild doc pyfastaq.egg-info find . -name __pycache__ | xargs rm -rf rm -rf /<>/debian/man make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/fastaq.substvars debian/files rm -fr -- debian/fastaq/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild install -d /<>/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p 3.10 I: pybuild base:240: python3.10 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_python3 D: dh_python3 dh_python3:175: version: 5.20221001 D: dh_python3 dh_python3:176: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:177: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:178: supported Python versions: 3.10,3.11 (default=3.10) D: dh_python3 debhelper:172: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:196: processing package fastaq... D: dh_python3 fs:399: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package fastaq D: dh_python3 depends:281: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build -i python{version} -p 3.10 I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq copying pyfastaq/caf.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq copying pyfastaq/__init__.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq copying pyfastaq/utils.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq copying pyfastaq/tasks.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq copying pyfastaq/sequences.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq copying pyfastaq/genetic_codes.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq copying pyfastaq/intervals.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq creating /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fasta.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_boulderio.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/translate.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/version.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/chunker.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_unique_by_id.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/capillary_to_pairs.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/acgtn_only.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_contigs.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fake_qual.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/merge.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/enumerate_names.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/split_by_base_count.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_name.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners copying pyfastaq/runners/filter.py -> /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.10 copying and adjusting scripts/fastaq -> build/scripts-3.10 changing mode of build/scripts-3.10/fastaq from 644 to 755 mkdir /<>/doc cd /<>/doc make[1]: Leaving directory '/<>' rm -f debian/fastaq.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {dir}; {interpreter} -m pytest pyfastaq/tests/" dh_auto_test pybuild --test -i python{version} -p 3.10 I: pybuild base:240: cd /<>; python3.10 -m pytest pyfastaq/tests/ ============================= test session starts ============================== platform linux -- Python 3.10.8, pytest-7.1.2, pluggy-1.0.0+repack rootdir: /<> collected 125 items pyfastaq/tests/caf_test.py . [ 0%] pyfastaq/tests/intervals_test.py ............. [ 11%] pyfastaq/tests/sequences_test.py ....................................... [ 42%] ........... [ 51%] pyfastaq/tests/tasks_test.py ........................................... [ 85%] .............. [ 96%] pyfastaq/tests/utils_test.py .... [100%] =============================== warnings summary =============================== pyfastaq/sequences.py:37 /<>/pyfastaq/sequences.py:37: DeprecationWarning: invalid escape sequence '\s' phylip_regex = re.compile('^\s*[0-9]+\s+[0-9]+$') pyfastaq/sequences.py:38 /<>/pyfastaq/sequences.py:38: DeprecationWarning: invalid escape sequence '\s' gbk_regex = re.compile('^LOCUS\s+\S') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 125 passed, 2 warnings in 0.27s ======================== rm -fr -- /tmp/dh-xdg-rundir-LU4Xudwy make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/fastaq.substvars rm -fr -- debian/.debhelper/generated/fastaq/ debian/fastaq/ debian/tmp/ dh_auto_install --destdir=debian/fastaq/ -O--buildsystem=pybuild install -d /<>/debian/fastaq pybuild --install -i python{version} -p 3.10 --dest-dir /<>/debian/fastaq I: pybuild base:240: /usr/bin/python3 setup.py install --root /<>/debian/fastaq running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_scripts running install_lib creating /<>/debian/fastaq/usr creating /<>/debian/fastaq/usr/lib creating /<>/debian/fastaq/usr/lib/python3.10 creating /<>/debian/fastaq/usr/lib/python3.10/dist-packages creating /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq creating /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_fasta.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/trim_ends.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/replace_bases.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_boulderio.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/translate.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/version.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/chunker.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/__init__.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/acgtn_only.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/trim_contigs.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/reverse_complement.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/merge.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/deinterleave.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_random_subset.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/add_indels.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/sort_by_size.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/enumerate_names.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/count_sequences.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/sequence_trim.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/interleave.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/get_ids.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/search_for_seq.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/sort_by_name.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/runners/filter.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/caf.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/__init__.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/utils.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/tasks.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/sequences.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/genetic_codes.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.10_fastaq/build/pyfastaq/intervals.py -> /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/translate.py to translate.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/version.py to version.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/merge.py to merge.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/runners/filter.py to filter.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/caf.py to caf.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/utils.py to utils.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/tasks.py to tasks.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/sequences.py to sequences.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-310.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq/intervals.py to intervals.cpython-310.pyc running install_egg_info running egg_info creating pyfastaq.egg-info writing pyfastaq.egg-info/PKG-INFO writing dependency_links to pyfastaq.egg-info/dependency_links.txt writing top-level names to pyfastaq.egg-info/top_level.txt writing manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pyfastaq.egg-info/SOURCES.txt' Copying pyfastaq.egg-info to /<>/debian/fastaq/usr/lib/python3.10/dist-packages/pyfastaq-3.17.0.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/fastaq/usr/bin copying build/scripts-3.10/fastaq -> /<>/debian/fastaq/usr/bin changing mode of /<>/debian/fastaq/usr/bin/fastaq to 755 dh_installdocs -O--buildsystem=pybuild install -d debian/fastaq/usr/share/doc/fastaq install -d debian/.debhelper/generated/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/.debhelper/generated/fastaq/dh_installchangelogs.dch.trimmed debian/fastaq/usr/share/doc/fastaq/changelog.Debian rm -f debian/fastaq.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \ -n 'FASTA and FASTQ file manipulation tools' \ --no-discard-stderr \ --version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1 scripts/fastaq 2>&1 | tail -n +13 | debian/make_man dh_installman -- install -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 install -p -m0644 ./debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 install -p -m0644 ./debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 install -p -m0644 ./debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 install -p -m0644 ./debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 install -p -m0644 ./debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 install -p -m0644 ./debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 install -p -m0644 ./debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 install -p -m0644 ./debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 install -p -m0644 ./debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 install -p -m0644 ./debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 install -p -m0644 ./debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 install -p -m0644 ./debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 install -p -m0644 ./debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 install -p -m0644 ./debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 install -p -m0644 ./debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 install -p -m0644 ./debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 install -p -m0644 ./debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 install -p -m0644 ./debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 install -p -m0644 ./debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 install -p -m0644 ./debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 install -p -m0644 ./debian/man/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 install -p -m0644 ./debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 install -p -m0644 ./debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 install -p -m0644 ./debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 install -p -m0644 ./debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 install -p -m0644 ./debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 install -p -m0644 ./debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 install -p -m0644 ./debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 install -p -m0644 ./debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 install -p -m0644 ./debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 install -p -m0644 ./debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 install -p -m0644 ./debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 install -p -m0644 ./debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 install -p -m0644 ./debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 install -p -m0644 ./debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 install -p -m0644 ./debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 install -p -m0644 ./debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 make[1]: Leaving directory '/<>' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:175: version: 5.20221001 D: dh_python3 dh_python3:176: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:177: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:178: supported Python versions: 3.10,3.11 (default=3.10) D: dh_python3 debhelper:172: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:196: processing package fastaq... D: dh_python3 fs:52: moving files from debian/fastaq/usr/lib/python3.10/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:399: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package fastaq D: dh_python3 depends:281: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 cd '/<>' dh_fixperms -O--buildsystem=pybuild find debian/fastaq ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f -a -true -a ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -d debian/fastaq/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chmod 0755 -- debian/fastaq/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chmod 0755 -- debian/fastaq/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -Pdebian/fastaq chmod 0644 -- debian/fastaq/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/fastaq >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/fastaq/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/fastaq .. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing fastaq (in debian/fastaq); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastaq/DEBIAN/control, package fastaq, directory debian/fastaq pkgstripfiles: Running PNG optimization (using 4 cpus) for package fastaq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fastaq' in '../fastaq_3.17.0-5_all.deb'. dpkg-genbuildinfo --build=binary -O../fastaq_3.17.0-5_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../fastaq_3.17.0-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-06T02:42:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fastaq_3.17.0-5_amd64.changes: ------------------------------ Format: 1.8 Date: Sat, 08 Oct 2022 15:29:32 +0200 Source: fastaq Binary: fastaq Built-For-Profiles: noudeb Architecture: all Version: 3.17.0-5 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: fastaq - FASTA and FASTQ file manipulation tools Closes: 1018351 Changes: fastaq (3.17.0-5) unstable; urgency=medium . * Actually fix watchfile. * Bump Standards-Version. * Enable tests and move to pytest. Closes: #1018351 Checksums-Sha1: 787f16afe591c75f2e003f75b7a197d34c069613 47912 fastaq_3.17.0-5_all.deb c91e2360c5a35519b6de5983cabcb37613a022fe 7483 fastaq_3.17.0-5_amd64.buildinfo Checksums-Sha256: 0380074d4b86e2f0943bae1761e5a7f1173ebd067f9526cba0c0472bb39db3c4 47912 fastaq_3.17.0-5_all.deb 8f289cd269073f12c16a816a3da6a21f1b0efb56213eb3a57f8201a15c4f12ad 7483 fastaq_3.17.0-5_amd64.buildinfo Files: 9643aa7bea33aa2bb8d1bef18449cd1c 47912 science optional fastaq_3.17.0-5_all.deb 193ae8f50235ab45e93ece5538eb051a 7483 science optional fastaq_3.17.0-5_amd64.buildinfo /<>/fastaq_3.17.0-5_amd64.changes.new could not be renamed to /<>/fastaq_3.17.0-5_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fastaq Binary: fastaq Architecture: all Version: 3.17.0-5 Checksums-Md5: 9643aa7bea33aa2bb8d1bef18449cd1c 47912 fastaq_3.17.0-5_all.deb Checksums-Sha1: 787f16afe591c75f2e003f75b7a197d34c069613 47912 fastaq_3.17.0-5_all.deb Checksums-Sha256: 0380074d4b86e2f0943bae1761e5a7f1173ebd067f9526cba0c0472bb39db3c4 47912 fastaq_3.17.0-5_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Sun, 06 Nov 2022 02:42:35 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.0), bash (= 5.2-1ubuntu2), binutils (= 2.39-8ubuntu2), binutils-common (= 2.39-8ubuntu2), binutils-x86-64-linux-gnu (= 2.39-8ubuntu2), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-9ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 5.20221001), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-9ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-9ubuntu1), gcc-12-base (= 12.2.0-9ubuntu1), gettext (= 0.21-8), gettext-base (= 0.21-8), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.12-1ubuntu1), help2man (= 1.49.2), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapparmor1 (= 3.0.7-1ubuntu3), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan8 (= 12.2.0-9ubuntu1), libatomic1 (= 12.2.0-9ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39-8ubuntu2), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-9ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2ubuntu1), libctf-nobfd0 (= 2.39-8ubuntu2), libctf0 (= 2.39-8ubuntu2), libcurl3-gnutls (= 7.86.0-1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdeflate0 (= 1.12-1), libdevmapper1.02.1 (= 2:1.02.185-1ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-4), libelf1 (= 0.187-4), libexpat1 (= 2.4.8-2), libfdisk1 (= 2.38-4ubuntu1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-12-dev (= 12.2.0-9ubuntu1), libgcc-s1 (= 12.2.0-9ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-9ubuntu1), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.39-8ubuntu2), libgssapi-krb5-2 (= 1.20-1), libhogweed6 (= 3.8.1-2), libhts3 (= 1.13+ds-2build2), libhtscodecs2 (= 1.2.2-1), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libip4tc2 (= 1.8.7-1ubuntu6), libisl23 (= 0.25-1), libitm1 (= 12.2.0-9ubuntu1), libjson-c5 (= 0.16-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3ubuntu1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), libldap-2.5-0 (= 2.5.13+dfsg-1ubuntu2), liblocale-gettext-perl (= 1.07-4build4), liblsan0 (= 12.2.0-9ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.49.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1ubuntu2), libpam-modules (= 1.5.2-2ubuntu1), libpam-modules-bin (= 1.5.2-2ubuntu1), libpam-runtime (= 1.5.2-2ubuntu1), libpam0g (= 1.5.2-2ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libpcre3 (= 2:8.39-14), libperl5.36 (= 5.36.0-4ubuntu2), libpipeline1 (= 1.5.6-2), libpsl5 (= 0.21.0-1.2build2), libpython3-stdlib (= 3.10.6-1ubuntu1), libpython3.10-minimal (= 3.10.8-1), libpython3.10-stdlib (= 3.10.8-1), libquadmath0 (= 12.2.0-9ubuntu1), libreadline8 (= 8.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu2), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsemanage-common (= 3.4-1build1), libsemanage2 (= 3.4-1build1), libsepol2 (= 3.4-2), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.39.3-1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.5-2ubuntu1), libstdc++-12-dev (= 12.2.0-9ubuntu1), libstdc++6 (= 12.2.0-9ubuntu1), libsub-override-perl (= 0.09-3), libsystemd-shared (= 251.4-1ubuntu7), libsystemd0 (= 251.4-1ubuntu7), libtasn1-6 (= 4.18.0-4build1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan2 (= 12.2.0-9ubuntu1), libubsan1 (= 12.2.0-9ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1build1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 35), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), mount (= 2.38-4ubuntu1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-4ubuntu2), perl-base (= 5.36.0-4ubuntu2), perl-modules-5.36 (= 5.36.0-4ubuntu2), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.6-1ubuntu1), python3-attr (= 22.1.0-1), python3-distutils (= 3.10.8-1), python3-iniconfig (= 1.1.1-2), python3-lib2to3 (= 3.10.8-1), python3-minimal (= 3.10.6-1ubuntu1), python3-more-itertools (= 8.10.0-2), python3-packaging (= 21.3-1.1), python3-pkg-resources (= 59.6.0-1.2), python3-pluggy (= 1.0.0+repack-1), python3-py (= 1.11.0-1), python3-pyparsing (= 3.0.7-2), python3-pytest (= 7.1.2-2ubuntu1), python3-setuptools (= 59.6.0-1.2), python3-tomli (= 2.0.1-1), python3.10 (= 3.10.8-1), python3.10-minimal (= 3.10.8-1), readline-common (= 8.2-1), rpcsvc-proto (= 1.4.2-0ubuntu6), samtools (= 1.13-4), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), systemd (= 251.4-1ubuntu7), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1665235772" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fastaq_3.17.0-5_all.deb ----------------------- new Debian package, version 2.0. size 47912 bytes: control archive=3543 bytes. 756 bytes, 16 lines control 8150 bytes, 93 lines md5sums 247 bytes, 12 lines * postinst #!/bin/sh 360 bytes, 12 lines * prerm #!/bin/sh Package: fastaq Version: 3.17.0-5 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 195 Depends: python3:any, python3-pkg-resources, samtools Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/Fastaq Description: FASTA and FASTQ file manipulation tools Fastaq represents a diverse collection of scripts that perform useful and common FASTA/FASTQ manipulation tasks, such as filtering, merging, splitting, sorting, trimming, search/replace, etc. Input and output files can be gzipped (format is automatically detected) and individual Fastaq commands can be piped together. drwxr-xr-x root/root 0 2022-10-08 13:29 ./ drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/ drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/bin/ -rwxr-xr-x root/root 4178 2022-10-08 13:29 ./usr/bin/fastaq drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/lib/python3/ drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/ -rw-r--r-- root/root 567 2022-10-08 13:29 ./usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2022-10-08 13:29 ./usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/dependency_links.txt -rw-r--r-- root/root 9 2022-10-08 13:29 ./usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/lib/python3/dist-packages/pyfastaq/ -rw-r--r-- root/root 284 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/__init__.py -rw-r--r-- root/root 2090 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/caf.py -rw-r--r-- root/root 2546 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/genetic_codes.py -rw-r--r-- root/root 3790 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/intervals.py drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/lib/python3/dist-packages/pyfastaq/runners/ -rw-r--r-- root/root 0 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/__init__.py -rw-r--r-- root/root 463 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/acgtn_only.py -rw-r--r-- root/root 4215 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/add_indels.py -rw-r--r-- root/root 894 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/caf_to_fastq.py -rw-r--r-- root/root 714 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/capillary_to_pairs.py -rw-r--r-- root/root 1544 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/chunker.py -rw-r--r-- root/root 379 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/count_sequences.py -rw-r--r-- root/root 831 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/deinterleave.py -rw-r--r-- root/root 1089 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/enumerate_names.py -rw-r--r-- root/root 609 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/expand_nucleotides.py -rw-r--r-- root/root 587 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/fasta_to_fastq.py -rw-r--r-- root/root 2082 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/filter.py -rw-r--r-- root/root 433 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/get_ids.py -rw-r--r-- root/root 733 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py -rw-r--r-- root/root 871 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/interleave.py -rw-r--r-- root/root 1367 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/make_random_contigs.py -rw-r--r-- root/root 581 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/merge.py -rw-r--r-- root/root 574 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/replace_bases.py -rw-r--r-- root/root 423 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/reverse_complement.py -rw-r--r-- root/root 704 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py -rw-r--r-- root/root 757 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/search_for_seq.py -rw-r--r-- root/root 1495 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/sequence_trim.py -rw-r--r-- root/root 433 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_name.py -rw-r--r-- root/root 618 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_size.py -rw-r--r-- root/root 939 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/split_by_base_count.py -rw-r--r-- root/root 429 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/strip_illumina_suffix.py -rw-r--r-- root/root 483 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_boulderio.py -rw-r--r-- root/root 596 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_fake_qual.py -rw-r--r-- root/root 1114 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_fasta.py -rw-r--r-- root/root 428 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_mira_xml.py -rw-r--r-- root/root 651 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_orfs_gff.py -rw-r--r-- root/root 4237 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_perfect_reads.py -rw-r--r-- root/root 1606 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_random_subset.py -rw-r--r-- root/root 3207 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_tiling_bam.py -rw-r--r-- root/root 593 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_unique_by_id.py -rw-r--r-- root/root 627 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/translate.py -rw-r--r-- root/root 507 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_Ns_at_end.py -rw-r--r-- root/root 766 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_contigs.py -rw-r--r-- root/root 648 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_ends.py -rw-r--r-- root/root 71 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/version.py -rw-r--r-- root/root 25087 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/sequences.py -rw-r--r-- root/root 29245 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/tasks.py -rw-r--r-- root/root 2277 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/utils.py drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/share/ drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/share/doc/fastaq/ -rw-r--r-- root/root 595 2022-10-08 13:29 ./usr/share/doc/fastaq/changelog.Debian.gz -rw-r--r-- root/root 1154 2022-10-08 13:29 ./usr/share/doc/fastaq/copyright drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-08 13:29 ./usr/share/man/man1/ -rw-r--r-- root/root 355 2022-10-08 13:29 ./usr/share/man/man1/fastaq-acgtn_only.1.gz -rw-r--r-- root/root 654 2022-10-08 13:29 ./usr/share/man/man1/fastaq-add_indels.1.gz -rw-r--r-- root/root 460 2022-10-08 13:29 ./usr/share/man/man1/fastaq-caf_to_fastq.1.gz -rw-r--r-- root/root 493 2022-10-08 13:29 ./usr/share/man/man1/fastaq-capillary_to_pairs.1.gz -rw-r--r-- root/root 580 2022-10-08 13:29 ./usr/share/man/man1/fastaq-chunker.1.gz -rw-r--r-- root/root 323 2022-10-08 13:29 ./usr/share/man/man1/fastaq-count_sequences.1.gz -rw-r--r-- root/root 465 2022-10-08 13:29 ./usr/share/man/man1/fastaq-deinterleave.1.gz -rw-r--r-- root/root 513 2022-10-08 13:29 ./usr/share/man/man1/fastaq-enumerate_names.1.gz -rw-r--r-- root/root 429 2022-10-08 13:29 ./usr/share/man/man1/fastaq-expand_nucleotides.1.gz -rw-r--r-- root/root 340 2022-10-08 13:29 ./usr/share/man/man1/fastaq-fasta_to_fastq.1.gz -rw-r--r-- root/root 689 2022-10-08 13:29 ./usr/share/man/man1/fastaq-filter.1.gz -rw-r--r-- root/root 325 2022-10-08 13:29 ./usr/share/man/man1/fastaq-get_ids.1.gz -rw-r--r-- root/root 394 2022-10-08 13:29 ./usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.gz -rw-r--r-- root/root 438 2022-10-08 13:29 ./usr/share/man/man1/fastaq-interleave.1.gz -rw-r--r-- root/root 604 2022-10-08 13:29 ./usr/share/man/man1/fastaq-make_random_contigs.1.gz -rw-r--r-- root/root 352 2022-10-08 13:29 ./usr/share/man/man1/fastaq-merge.1.gz -rw-r--r-- root/root 368 2022-10-08 13:29 ./usr/share/man/man1/fastaq-replace_bases.1.gz -rw-r--r-- root/root 326 2022-10-08 13:29 ./usr/share/man/man1/fastaq-reverse_complement.1.gz -rw-r--r-- root/root 420 2022-10-08 13:29 ./usr/share/man/man1/fastaq-scaffolds_to_contigs.1.gz -rw-r--r-- root/root 476 2022-10-08 13:29 ./usr/share/man/man1/fastaq-search_for_seq.1.gz -rw-r--r-- root/root 614 2022-10-08 13:29 ./usr/share/man/man1/fastaq-sequence_trim.1.gz -rw-r--r-- root/root 333 2022-10-08 13:29 ./usr/share/man/man1/fastaq-sort_by_name.1.gz -rw-r--r-- root/root 381 2022-10-08 13:29 ./usr/share/man/man1/fastaq-sort_by_size.1.gz -rw-r--r-- root/root 485 2022-10-08 13:29 ./usr/share/man/man1/fastaq-split_by_base_count.1.gz -rw-r--r-- root/root 366 2022-10-08 13:29 ./usr/share/man/man1/fastaq-strip_illumina_suffix.1.gz -rw-r--r-- root/root 362 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_boulderio.1.gz -rw-r--r-- root/root 360 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_fake_qual.1.gz -rw-r--r-- root/root 536 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_fasta.1.gz -rw-r--r-- root/root 350 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_mira_xml.1.gz -rw-r--r-- root/root 394 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_orfs_gff.1.gz -rw-r--r-- root/root 664 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_perfect_reads.1.gz -rw-r--r-- root/root 543 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_random_subset.1.gz -rw-r--r-- root/root 596 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_tiling_bam.1.gz -rw-r--r-- root/root 428 2022-10-08 13:29 ./usr/share/man/man1/fastaq-to_unique_by_id.1.gz -rw-r--r-- root/root 388 2022-10-08 13:29 ./usr/share/man/man1/fastaq-translate.1.gz -rw-r--r-- root/root 387 2022-10-08 13:29 ./usr/share/man/man1/fastaq-trim_Ns_at_end.1.gz -rw-r--r-- root/root 467 2022-10-08 13:29 ./usr/share/man/man1/fastaq-trim_contigs.1.gz -rw-r--r-- root/root 375 2022-10-08 13:29 ./usr/share/man/man1/fastaq-trim_ends.1.gz -rw-r--r-- root/root 198 2022-10-08 13:29 ./usr/share/man/man1/fastaq-version.1.gz -rw-r--r-- root/root 1434 2022-10-08 13:29 ./usr/share/man/man1/fastaq.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 2864 Build-Time: 10 Distribution: lunar-proposed Host Architecture: amd64 Install-Time: 8 Job: fastaq_3.17.0-5.dsc Machine Architecture: amd64 Package: fastaq Package-Time: 19 Source-Version: 3.17.0-5 Space: 2864 Status: successful Version: 3.17.0-5 -------------------------------------------------------------------------------- Finished at 2022-11-06T02:42:35Z Build needed 00:00:19, 2864k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24608205 Scanning for processes to kill in build PACKAGEBUILD-24608205