https://launchpad.net/ubuntu/+source/fastaq/3.17.0-6/+build/27574430 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-114 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 x86_64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 18 Dec 23:17:18 ntpdate[1857]: adjust time server 10.131.248.1 offset 0.000392 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27574430 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-27574430 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27574430 Starting target for build PACKAGEBUILD-27574430 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27574430 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27574430 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27574430 Updating target for build PACKAGEBUILD-27574430 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1403 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.0 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6029 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [132 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [35.3 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [1034 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [303 kB] Fetched 24.9 MB in 3s (9578 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 135 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 111 MB of archives. After this operation, 6093 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.38-3ubuntu1 [2114 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.38-3ubuntu1 [20.3 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1 [193 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libgssapi-krb5-2 amd64 1.20.1-5build1 [142 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5-3 amd64 1.20.1-5build1 [346 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libk5crypto3 amd64 1.20.1-5build1 [81.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5support0 amd64 1.20.1-5build1 [33.2 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libssl3 amd64 3.0.10-1ubuntu3 [1910 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc3 amd64 1.3.4+ds-1 [81.4 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3 [41.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 linux-libc-dev amd64 6.6.0-14.14 [1580 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 13.2.0-9ubuntu1 [48.0 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgprofng0 amd64 2.41.50.20231214-1ubuntu1 [858 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libctf0 amd64 2.41.50.20231214-1ubuntu1 [83.2 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libctf-nobfd0 amd64 2.41.50.20231214-1ubuntu1 [86.3 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-x86-64-linux-gnu amd64 2.41.50.20231214-1ubuntu1 [2510 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libbinutils amd64 2.41.50.20231214-1ubuntu1 [539 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-common amd64 2.41.50.20231214-1ubuntu1 [258 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 binutils amd64 2.41.50.20231214-1ubuntu1 [7696 B] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-9ubuntu1 [45.2 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-s1 amd64 13.2.0-9ubuntu1 [63.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 13.2.0-9ubuntu1 [142 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 13.2.0-9ubuntu1 [29.5 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 13.2.0-9ubuntu1 [10.5 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 13.2.0-9ubuntu1 [2835 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 13.2.0-9ubuntu1 [1203 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 13.2.0-9ubuntu1 [2606 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 13.2.0-9ubuntu1 [1105 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 13.2.0-9ubuntu1 [1262 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 13.2.0-9ubuntu1 [153 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-9ubuntu1 [12.2 MB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-9ubuntu1 [2336 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-9ubuntu1 [2687 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-9ubuntu1 [21.5 MB] Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-9ubuntu1 [10.7 MB] Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++6 amd64 13.2.0-9ubuntu1 [771 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g amd64 1:1.3.dfsg-3ubuntu1 [63.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libsframe1 amd64 2.41.50.20231214-1ubuntu1 [13.8 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [297 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.38-3ubuntu1 [3248 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu5 [73.6 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.14 [89.0 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu1 [795 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 bsdutils amd64 1:2.39.2-6ubuntu1 [93.9 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 coreutils amd64 9.4-2ubuntu1 [1395 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1 [176 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma5 amd64 5.4.5-0.1 [128 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libapparmor1 amd64 4.0.0~alpha2-0ubuntu7 [48.2 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.2-1 [5512 B] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libcap-ng0 amd64 0.8.3-3 [15.3 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.2-1 [46.7 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libblkid1 amd64 2.39.2-6ubuntu1 [122 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libkmod2 amd64 30+20230601-2ubuntu1 [51.4 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu1 [228 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libselinux1 amd64 3.5-1build2 [78.5 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libmount1 amd64 2.39.2-6ubuntu1 [132 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpam0g amd64 1.5.2-9.1ubuntu1 [65.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libseccomp2 amd64 2.5.4-2ubuntu1 [49.3 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-sysv amd64 255-1ubuntu1 [11.7 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-dev all 255-1ubuntu1 [98.5 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd amd64 255-1ubuntu1 [3484 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd-shared amd64 255-1ubuntu1 [2062 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4 [21.4 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libuuid1 amd64 2.39.2-6ubuntu1 [34.1 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libcryptsetup12 amd64 2:2.6.1-5ubuntu1 [242 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libfdisk1 amd64 2.39.2-6ubuntu1 [145 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 mount amd64 2.39.2-6ubuntu1 [118 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd0 amd64 255-1ubuntu1 [427 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libudev1 amd64 255-1ubuntu1 [169 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2 [25.5 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapt-pkg6.0 amd64 2.7.7 [945 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 tar amd64 1.34+dfsg-1.2ubuntu2 [293 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg amd64 1.22.1ubuntu5 [1387 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-3 [161 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 login amd64 1:4.13+dfsg1-3ubuntu1 [201 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20231209-1 [187 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libperl5.36 amd64 5.36.0-10ubuntu1 [4782 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 perl amd64 5.36.0-10ubuntu1 [235 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 perl-base amd64 5.36.0-10ubuntu1 [1770 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4 [736 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm6 amd64 1.23-5 [33.3 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm-compat4 amd64 1.23-5 [6498 B] Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 util-linux amd64 2.39.2-6ubuntu1 [1120 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libdebconfclient0 amd64 0.271ubuntu1 [11.3 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.3 [51.2 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.38-3ubuntu1 [680 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20231209-1 [25.2 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-3ubuntu1 [33.7 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt amd64 2.7.7 [1376 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt-utils amd64 2.7.7 [216 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2 [537 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.4-1build1 [64.3 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libffi8 amd64 3.4.4-2 [24.4 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libp11-kit0 amd64 0.25.3-2ubuntu2 [298 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30 amd64 3.8.1-4ubuntu6 [988 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules-bin amd64 1.5.2-9.1ubuntu1 [47.6 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules amd64 1.5.2-9.1ubuntu1 [284 kB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 init amd64 1.66ubuntu1 [6186 B] Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libsmartcols1 amd64 2.39.2-6ubuntu1 [63.3 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 uuid-runtime amd64 2.39.2-6ubuntu1 [32.9 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3build1 [70.0 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage-common all 3.5-1build1 [9982 B] Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2 [300 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage2 amd64 3.5-1build1 [92.9 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20231209-1 [147 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20231209-1 [107 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 passwd amd64 1:4.13+dfsg1-3ubuntu1 [844 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-2ubuntu1 [59.0 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20231126-1 [126 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-2ubuntu1 [708 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 readline-common all 8.2-3 [56.2 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline8 amd64 8.2-3 [152 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libsqlite3-0 amd64 3.44.2-1 [685 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 openssl amd64 3.0.10-1ubuntu3 [1188 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 bsdextrautils amd64 2.39.2-6ubuntu1 [73.5 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16 amd64 1.6.40-2 [186 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 xz-utils amd64 5.4.5-0.1 [268 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-2ubuntu1 [1122 B] Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-2ubuntu1 [5166 B] Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-2ubuntu1 [29.0 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg-dev all 1.22.1ubuntu5 [1147 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libdpkg-perl all 1.22.1ubuntu5 [286 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 44 [12.4 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.32.2-1 [32.1 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.32.2-1 [67.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.7-3 [83.3 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 pinentry-curses amd64 1.2.1-3ubuntu1 [34.9 kB] Preconfiguring packages ... 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Setting up libtirpc-dev:amd64 (1.3.4+ds-1) ... Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.1ubuntu5) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu5) ... Setting up libnsl-dev:amd64 (1.3.0-3) ... Setting up libc6-dev:amd64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:amd64 (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27574430 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-27574430 --arch=amd64 --dist=noble-proposed --nolog -A fastaq_3.17.0-6.dsc Initiating build PACKAGEBUILD-27574430 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-114.buildd +==============================================================================+ | fastaq 3.17.0-6 (amd64) Mon, 18 Dec 2023 23:17:43 +0000 | +==============================================================================+ Package: fastaq Version: 3.17.0-6 Source Version: 3.17.0-6 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27574430/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/fastaq-oUcSLi/resolver-4xzfLT' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fastaq_3.17.0-6.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/fastaq-oUcSLi/fastaq-3.17.0' with '<>' I: NOTICE: Log filtering will replace 'build/fastaq-oUcSLi' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-pytest, samtools, help2man, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-pytest, samtools, help2man, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [416 B] Get:5 copy:/<>/apt_archive ./ Packages [496 B] Fetched 1869 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu72 libldap2 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python3 python3-distutils python3-iniconfig python3-lib2to3 python3-minimal python3-packaging python3-pkg-resources python3-pluggy python3-pytest python3-setuptools python3.11 python3.11-minimal samtools Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.11-venv python3.11-doc binfmt-support cwltool Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-pygments The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbrotli1 libcurl3-gnutls libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu72 libldap2 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python3 python3-distutils python3-iniconfig python3-lib2to3 python3-minimal python3-packaging python3-pkg-resources python3-pluggy python3-pytest python3-setuptools python3.11 python3.11-minimal samtools sbuild-build-depends-main-dummy 0 upgraded, 65 newly installed, 0 to remove and 0 not upgraded. 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amd64 gettext amd64 0.21-14 [865 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 debhelper all 13.11.8ubuntu1 [940 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 python3-lib2to3 all 3.11.5-1 [79.0 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 python3-setuptools all 68.1.2-2 [396 kB] Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 dh-python all 6.20231204 [111 kB] Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 help2man amd64 1.49.3 [201 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libbrotli1 amd64 1.1.0-2 [332 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4 [20.1 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4 [53.3 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libldap2 amd64 2.6.6+dfsg-1~exp1ubuntu1 [193 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build4 [58.2 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libssh-4 amd64 0.10.5-3ubuntu1 [187 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl3-gnutls amd64 8.4.0-2ubuntu1 [328 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.18-1 [43.1 kB] Get:59 http://ftpmaster.internal/ubuntu noble/universe amd64 libhtscodecs2 amd64 1.6.0-1 [98.9 kB] Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 libhts3 amd64 1.18+ds-1 [428 kB] Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 python3-packaging all 23.2-1 [40.6 kB] Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pluggy all 1.3.0-1 [19.6 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 python3-pytest all 7.4.3-2 [241 kB] Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 samtools amd64 1.19-1 [592 kB] Preconfiguring packages ... 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Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.1ubuntu5 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1ubuntu1 binutils-common_2.41.50.20231214-1ubuntu1 binutils-x86-64-linux-gnu_2.41.50.20231214-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-9ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_6.20231204 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu5 dpkg-dev_1.22.1ubuntu5 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-9ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-9ubuntu1 gcc-13-base_13.2.0-9ubuntu1 gettext_0.21-14 gettext-base_0.21-14 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 help2man_1.49.3 hostname_3.23+nmu1ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-5build1 libacl1_2.3.1-3 libapparmor1_4.0.0~alpha2-0ubuntu7 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_13.2.0-9ubuntu1 libassuan0_2.5.6-1 libatomic1_13.2.0-9ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41.50.20231214-1ubuntu1 libblkid1_2.39.2-6ubuntu1 libbrotli1_1.1.0-2 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcap-ng0_0.8.3-3 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-9ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-5ubuntu1 libctf-nobfd0_2.41.50.20231214-1ubuntu1 libctf0_2.41.50.20231214-1ubuntu1 libcurl3-gnutls_8.4.0-2ubuntu1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271ubuntu1 libdebhelper-perl_13.11.8ubuntu1 libdeflate0_1.18-1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.22.1ubuntu5 libdw1_0.190-1 libelf1_0.190-1 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.2-1 libfdisk1_2.39.2-6ubuntu1 libffi8_3.4.4-2 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-9ubuntu1 libgcc-s1_13.2.0-9ubuntu1 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu6 libgomp1_13.2.0-9ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgprofng0_2.41.50.20231214-1ubuntu1 libgssapi-krb5-2_1.20.1-5build1 libhogweed6_3.9.1-2 libhts3_1.18+ds-1 libhtscodecs2_1.6.0-1 libhwasan0_13.2.0-9ubuntu1 libicu72_72.1-4ubuntu1 libidn2-0_2.3.4-1build1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-9ubuntu1 libjansson4_2.14-2 libjson-c5_0.17-1 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-2 libkmod2_30+20230601-2ubuntu1 libkrb5-3_1.20.1-5build1 libkrb5support0_1.20.1-5build1 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_13.2.0-9ubuntu1 liblz4-1_1.9.4-1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.2-6ubuntu1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncurses6_6.4+20231209-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-0ubuntu6 libp11-kit0_0.25.3-2ubuntu2 libpam-modules_1.5.2-9.1ubuntu1 libpam-modules-bin_1.5.2-9.1ubuntu1 libpam-runtime_1.5.2-9.1ubuntu1 libpam0g_1.5.2-9.1ubuntu1 libpcre2-8-0_10.42-4ubuntu1 libperl5.36_5.36.0-10ubuntu1 libpipeline1_1.5.7-1 libpng16-16_1.6.40-2 libproc2-0_2:4.0.4-2ubuntu1 libpsl5_0.21.2-1build1 libpython3-stdlib_3.11.4-5ubuntu1 libpython3.11-minimal_3.11.7-2 libpython3.11-stdlib_3.11.7-2 libquadmath0_13.2.0-9ubuntu1 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2ubuntu1 libselinux1_3.5-1build2 libsemanage-common_3.5-1build1 libsemanage2_3.5-1build1 libsepol2_3.5-2 libsframe1_2.41.50.20231214-1ubuntu1 libsmartcols1_2.39.2-6ubuntu1 libsqlite3-0_3.44.2-1 libss2_1.47.0-2ubuntu1 libssh-4_0.10.5-3ubuntu1 libssl3_3.0.10-1ubuntu3 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255-1ubuntu1 libsystemd0_255-1ubuntu1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libtsan2_13.2.0-9ubuntu1 libubsan1_13.2.0-9ubuntu1 libuchardet0_0.0.8-1 libudev1_255-1ubuntu1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.2-6ubuntu1 libxml2_2.9.14+dfsg-1.3build2 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.0-14.14 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-3ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_44 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 media-types_10.1.0 mount_2.39.2-6ubuntu1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 netbase_6.4 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 perl_5.36.0-10ubuntu1 perl-base_5.36.0-10ubuntu1 perl-modules-5.36_5.36.0-10ubuntu1 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 python3_3.11.4-5ubuntu1 python3-distutils_3.11.5-1 python3-iniconfig_1.1.1-2 python3-lib2to3_3.11.5-1 python3-minimal_3.11.4-5ubuntu1 python3-packaging_23.2-1 python3-pkg-resources_68.1.2-2 python3-pluggy_1.3.0-1 python3-pytest_7.4.3-2 python3-setuptools_68.1.2-2 python3.11_3.11.7-2 python3.11-minimal_3.11.7-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 samtools_1.19-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_255-1ubuntu1 systemd-dev_255-1ubuntu1 systemd-sysv_255-1ubuntu1 sysvinit-utils_3.08-3ubuntu1 tar_1.34+dfsg-1.2ubuntu2 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fastaq Binary: fastaq Architecture: all Version: 3.17.0-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Jorge Soares , Sascha Steinbiss Homepage: https://github.com/sanger-pathogens/Fastaq Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/fastaq Vcs-Git: https://salsa.debian.org/med-team/fastaq.git Testsuite: autopkgtest Testsuite-Triggers: python3, samtools Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-pytest, samtools, help2man Package-List: fastaq deb science optional arch=all Checksums-Sha1: 7f62b54535d50f657173ac52717e048d3c6a06a3 71324 fastaq_3.17.0.orig.tar.gz db46f7f7f52e43101b91996820ac0663cf3663ca 4884 fastaq_3.17.0-6.debian.tar.xz Checksums-Sha256: bb63c03e4bdde92deb43469f8a93a7f440272e47adc8edb9d94cd5fa107fa746 71324 fastaq_3.17.0.orig.tar.gz c00f3505055129a1bf352d127f2c8342ba2389dcb470198b220543b0fdcfbcdb 4884 fastaq_3.17.0-6.debian.tar.xz Files: 4133971445c9c9037bc384d86cdfe4d8 71324 fastaq_3.17.0.orig.tar.gz 3dfc858276000b5cab63249fbc855f49 4884 fastaq_3.17.0-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmWAcwIACgkQ6NN64vCf SHJdUA//ZSVJ4+L8RLGVrKVCArX6nMK+uax+faKrFTSB0l+qwvMhvrQtSix8jgAg 1qz87m9Tg+uz9989XJ2BoBzbZoRBzuGm9grLiRILgrxZJwCRauQqD+nx7LI4oNVn rOEsi1r2gVZkIwOwo0SHSqRB/wHH94iN98dB+1iE58A6wIryhxOCQ9yKn1E4FE6Y z7Xn8JG5W3nLtHzRCMAmJWvBhgF4uWA3PZWYNuCDuMgeBDUZkQaBZKS0lc1Q4lqE KJaVru8KLCHNVVrF8ljXJMDadNe/a6EcTMudtS0O8wT99SRFeeEHJleOzOW4Enq2 bNo3w6uAd2novPJxQJxZzhZp0uGpKJa4F9NT5dnZ7IAYA5Ou0qVumihuINIeZQg8 jSYVv57p/Gf0yOC6B6Q3L07zq4Ly2qBjncY/wsFMW58xlcI1SXaqj6s24PGefTil 11L4NayioDD1wjOPhFb3qGtcESTDwScjMHL4TuzPOp7MXkiDARquC7OL88nqK9Bw d40uWRnEQxsD6iLT6Vs57eaUBJORb7pHFRwEdR1CNF1IMEJvjVi+76hPfzn25/ea pjOTxZJzNc0q+EyY8tK1ISCLZtSPqDvyDrvd2mekvP2XiJaVGREtZ3mhdvipv5tQ Wj2ygfGLnRf6Q/OlJlDLIQNmR/lJi6Xdy/adxGhLFoNJ/x1jXVY= =REx4 -----END PGP SIGNATURE----- gpgv: Signature made Mon Dec 18 16:27:46 2023 UTC gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastaq_3.17.0-6.dsc: no acceptable signature found dpkg-source: info: extracting fastaq in /<> dpkg-source: info: unpacking fastaq_3.17.0.orig.tar.gz dpkg-source: info: unpacking fastaq_3.17.0-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying tests Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27574430 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27574430 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27574430 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.17.0-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf build .pybuild doc pyfastaq.egg-info .pytest_cache find . -name __pycache__ | xargs rm -rf rm -rf /<>/debian/man make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/fastaq.substvars debian/files rm -fr -- debian/fastaq/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 I: pybuild base:310: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_python3 D: dh_python3 dh_python3:179: version: 6.20231204 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:183: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:204: processing package fastaq... D: dh_python3 fs:348: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package fastaq D: dh_python3 depends:281: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build -i python{version} -p 3.11 I: pybuild base:310: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/__init__.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/genetic_codes.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/caf.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/intervals.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/utils.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/sequences.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/tasks.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq creating /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/chunker.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_name.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fasta.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/merge.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fake_qual.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_unique_by_id.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/version.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_contigs.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/translate.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_boulderio.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/filter.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/enumerate_names.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/capillary_to_pairs.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/acgtn_only.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/split_by_base_count.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.11 copying and adjusting scripts/fastaq -> build/scripts-3.11 changing mode of build/scripts-3.11/fastaq from 644 to 755 mkdir /<>/doc cd /<>/doc make[1]: Leaving directory '/<>' rm -f debian/fastaq.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {dir}; {interpreter} -m pytest pyfastaq/tests/" dh_auto_test pybuild --test -i python{version} -p 3.11 I: pybuild base:310: cd /<>; python3.11 -m pytest pyfastaq/tests/ ============================= test session starts ============================== platform linux -- Python 3.11.7, pytest-7.4.3, pluggy-1.3.0 rootdir: /<> collected 125 items pyfastaq/tests/caf_test.py . [ 0%] pyfastaq/tests/intervals_test.py ............. [ 11%] pyfastaq/tests/sequences_test.py ....................................... [ 42%] ........... [ 51%] pyfastaq/tests/tasks_test.py ........................................... [ 85%] .............. [ 96%] pyfastaq/tests/utils_test.py .... [100%] =============================== warnings summary =============================== pyfastaq/__init__.py:1 /<>/pyfastaq/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution pyfastaq/sequences.py:37 /<>/pyfastaq/sequences.py:37: DeprecationWarning: invalid escape sequence '\s' phylip_regex = re.compile('^\s*[0-9]+\s+[0-9]+$') pyfastaq/sequences.py:38 /<>/pyfastaq/sequences.py:38: DeprecationWarning: invalid escape sequence '\s' gbk_regex = re.compile('^LOCUS\s+\S') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 125 passed, 3 warnings in 0.26s ======================== rm -fr -- /tmp/dh-xdg-rundir-6_STMnlj make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/fastaq.substvars rm -fr -- debian/.debhelper/generated/fastaq/ debian/fastaq/ debian/tmp/ dh_auto_install --destdir=debian/fastaq/ -O--buildsystem=pybuild install -m0755 -d /<>/debian/fastaq pybuild --install -i python{version} -p 3.11 --dest-dir /<>/debian/fastaq I: pybuild base:310: /usr/bin/python3 setup.py install --root /<>/debian/fastaq running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /<>/debian/fastaq/usr creating /<>/debian/fastaq/usr/lib creating /<>/debian/fastaq/usr/lib/python3.11 creating /<>/debian/fastaq/usr/lib/python3.11/dist-packages creating /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/__init__.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/genetic_codes.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq creating /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/deinterleave.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sequence_trim.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/chunker.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/count_sequences.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_name.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_random_subset.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_size.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/__init__.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/interleave.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fasta.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/merge.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/replace_bases.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_ends.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/version.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_contigs.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/translate.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_boulderio.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_ids.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/search_for_seq.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/reverse_complement.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/filter.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/enumerate_names.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/add_indels.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/acgtn_only.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/caf.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/intervals.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/utils.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/sequences.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /<>/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/tasks.py -> /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/merge.py to merge.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/version.py to version.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/translate.py to translate.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/filter.py to filter.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/caf.py to caf.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/intervals.py to intervals.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/utils.py to utils.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/sequences.py to sequences.cpython-311.pyc byte-compiling /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/tasks.py to tasks.cpython-311.pyc running install_egg_info running egg_info creating pyfastaq.egg-info writing pyfastaq.egg-info/PKG-INFO writing dependency_links to pyfastaq.egg-info/dependency_links.txt writing top-level names to pyfastaq.egg-info/top_level.txt writing manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pyfastaq.egg-info/SOURCES.txt' Copying pyfastaq.egg-info to /<>/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq-3.17.0.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/fastaq/usr/bin copying build/scripts-3.11/fastaq -> /<>/debian/fastaq/usr/bin changing mode of /<>/debian/fastaq/usr/bin/fastaq to 755 dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/.debhelper/generated/fastaq/dh_installchangelogs.dch.trimmed debian/fastaq/usr/share/doc/fastaq/changelog.Debian rm -f debian/fastaq.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/man PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \ -n 'FASTA and FASTQ file manipulation tools' \ --no-discard-stderr \ --version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1 scripts/fastaq 2>&1 | tail -n +13 | debian/make_man dh_installman -- install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq.1 mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 make[1]: Leaving directory '/<>' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20231204 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:183: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:204: processing package fastaq... D: dh_python3 fs:50: moving files from debian/fastaq/usr/lib/python3.11/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:348: package fastaq details = {'requires.txt': set(), 'egg-info': {'debian/fastaq/usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package fastaq D: dh_python3 depends:281: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 cd '/<>' dh_fixperms -O--buildsystem=pybuild find debian/fastaq ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f -a -true -a ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chmod 0755 -- debian/fastaq/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chmod 0755 -- debian/fastaq/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -Pdebian/fastaq chmod 0644 -- debian/fastaq/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN cd debian/fastaq >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/fastaq/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/fastaq .. INFO: pkgstriptranslations version 154 pkgstriptranslations: processing fastaq (in debian/fastaq); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastaq/DEBIAN/control, package fastaq, directory debian/fastaq pkgstripfiles: Running PNG optimization (using 4 cpus) for package fastaq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fastaq' in '../fastaq_3.17.0-6_all.deb'. dpkg-genbuildinfo --build=binary -O../fastaq_3.17.0-6_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../fastaq_3.17.0-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-18T23:18:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fastaq_3.17.0-6_amd64.changes: ------------------------------ Format: 1.8 Date: Mon, 18 Dec 2023 17:18:28 +0100 Source: fastaq Binary: fastaq Built-For-Profiles: noudeb Architecture: all Version: 3.17.0-6 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sascha Steinbiss Description: fastaq - FASTA and FASTQ file manipulation tools Closes: 1044289 Changes: fastaq (3.17.0-6) unstable; urgency=medium . * Enable building twice in a row. Closes: #1044289 * Bump Standards-Version. * Bump copyright dates. * Update copyright info in d/copyright. Checksums-Sha1: 46c38e7c273af2fb125e3f8749fdc7721da544d1 47916 fastaq_3.17.0-6_all.deb 39235eb0df9707060155f4ac663e07109b91ab32 6835 fastaq_3.17.0-6_amd64.buildinfo Checksums-Sha256: 8f4b6e000dc3476c8040753027222a5edf79775a99b231b8cd6873a56bd9c099 47916 fastaq_3.17.0-6_all.deb 5741eeefd4e08348fc72c49bcab119094e2d813738a264570bed85395010b8e5 6835 fastaq_3.17.0-6_amd64.buildinfo Files: c931d30f9db4894dd1d2744a750874b6 47916 science optional fastaq_3.17.0-6_all.deb 6b98c8cbf84ceac320beeb2b20ee3603 6835 science optional fastaq_3.17.0-6_amd64.buildinfo /<>/fastaq_3.17.0-6_amd64.changes.new could not be renamed to /<>/fastaq_3.17.0-6_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: fastaq Binary: fastaq Architecture: all Version: 3.17.0-6 Checksums-Md5: c931d30f9db4894dd1d2744a750874b6 47916 fastaq_3.17.0-6_all.deb Checksums-Sha1: 46c38e7c273af2fb125e3f8749fdc7721da544d1 47916 fastaq_3.17.0-6_all.deb Checksums-Sha256: 8f4b6e000dc3476c8040753027222a5edf79775a99b231b8cd6873a56bd9c099 47916 fastaq_3.17.0-6_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Mon, 18 Dec 2023 23:18:02 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), binutils-x86-64-linux-gnu (= 2.41.50.20231214-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 6.20231204), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu5), dpkg-dev (= 1.22.1ubuntu5), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), help2man (= 1.49.3), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231214-1ubuntu1), libblkid1 (= 2.39.2-6ubuntu1), libbrotli1 (= 1.1.0-2), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libcurl3-gnutls (= 8.4.0-2ubuntu1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.1ubuntu5), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu6), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgprofng0 (= 2.41.50.20231214-1ubuntu1), libgssapi-krb5-2 (= 1.20.1-5build1), libhogweed6 (= 3.9.1-2), libhts3 (= 1.18+ds-1), libhtscodecs2 (= 1.6.0-1), libhwasan0 (= 13.2.0-9ubuntu1), libicu72 (= 72.1-4ubuntu1), libidn2-0 (= 2.3.4-1build1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9ubuntu1), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblocale-gettext-perl (= 1.07-6), liblsan0 (= 13.2.0-9ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncurses6 (= 6.4+20231209-1), libncursesw6 (= 6.4+20231209-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libp11-kit0 (= 0.25.3-2ubuntu2), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpsl5 (= 0.21.2-1build1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11-minimal (= 3.11.7-2), libpython3.11-stdlib (= 3.11.7-2), libquadmath0 (= 13.2.0-9ubuntu1), libreadline8 (= 8.2-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsmartcols1 (= 2.39.2-6ubuntu1), libsqlite3-0 (= 3.44.2-1), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-9ubuntu1), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libxml2 (= 2.9.14+dfsg-1.3build2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), netbase (= 6.4), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5ubuntu1), python3-distutils (= 3.11.5-1), python3-iniconfig (= 1.1.1-2), python3-lib2to3 (= 3.11.5-1), python3-minimal (= 3.11.4-5ubuntu1), python3-packaging (= 23.2-1), python3-pkg-resources (= 68.1.2-2), python3-pluggy (= 1.3.0-1), python3-pytest (= 7.4.3-2), python3-setuptools (= 68.1.2-2), python3.11 (= 3.11.7-2), python3.11-minimal (= 3.11.7-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), samtools (= 1.19-1), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.2ubuntu2), tzdata (= 2023c-9ubuntu1), util-linux (= 2.39.2-6ubuntu1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1702916308" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fastaq_3.17.0-6_all.deb ----------------------- new Debian package, version 2.0. size 47916 bytes: control archive=3542 bytes. 756 bytes, 16 lines control 8150 bytes, 93 lines md5sums 247 bytes, 12 lines * postinst #!/bin/sh 360 bytes, 12 lines * prerm #!/bin/sh Package: fastaq Version: 3.17.0-6 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 195 Depends: python3:any, python3-pkg-resources, samtools Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/Fastaq Description: FASTA and FASTQ file manipulation tools Fastaq represents a diverse collection of scripts that perform useful and common FASTA/FASTQ manipulation tasks, such as filtering, merging, splitting, sorting, trimming, search/replace, etc. Input and output files can be gzipped (format is automatically detected) and individual Fastaq commands can be piped together. drwxr-xr-x root/root 0 2023-12-18 16:18 ./ drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/ drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/bin/ -rwxr-xr-x root/root 4178 2023-12-18 16:18 ./usr/bin/fastaq drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/ -rw-r--r-- root/root 539 2023-12-18 16:18 ./usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-12-18 16:18 ./usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/dependency_links.txt -rw-r--r-- root/root 9 2023-12-18 16:18 ./usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/lib/python3/dist-packages/pyfastaq/ -rw-r--r-- root/root 284 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/__init__.py -rw-r--r-- root/root 2090 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/caf.py -rw-r--r-- root/root 2546 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/genetic_codes.py -rw-r--r-- root/root 3790 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/intervals.py drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/lib/python3/dist-packages/pyfastaq/runners/ -rw-r--r-- root/root 0 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/__init__.py -rw-r--r-- root/root 463 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/acgtn_only.py -rw-r--r-- root/root 4215 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/add_indels.py -rw-r--r-- root/root 894 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/caf_to_fastq.py -rw-r--r-- root/root 714 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/capillary_to_pairs.py -rw-r--r-- root/root 1544 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/chunker.py -rw-r--r-- root/root 379 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/count_sequences.py -rw-r--r-- root/root 831 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/deinterleave.py -rw-r--r-- root/root 1089 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/enumerate_names.py -rw-r--r-- root/root 609 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/expand_nucleotides.py -rw-r--r-- root/root 587 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/fasta_to_fastq.py -rw-r--r-- root/root 2082 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/filter.py -rw-r--r-- root/root 433 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/get_ids.py -rw-r--r-- root/root 733 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py -rw-r--r-- root/root 871 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/interleave.py -rw-r--r-- root/root 1367 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/make_random_contigs.py -rw-r--r-- root/root 581 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/merge.py -rw-r--r-- root/root 574 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/replace_bases.py -rw-r--r-- root/root 423 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/reverse_complement.py -rw-r--r-- root/root 704 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py -rw-r--r-- root/root 757 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/search_for_seq.py -rw-r--r-- root/root 1495 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/sequence_trim.py -rw-r--r-- root/root 433 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_name.py -rw-r--r-- root/root 618 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_size.py -rw-r--r-- root/root 939 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/split_by_base_count.py -rw-r--r-- root/root 429 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/strip_illumina_suffix.py -rw-r--r-- root/root 483 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_boulderio.py -rw-r--r-- root/root 596 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_fake_qual.py -rw-r--r-- root/root 1114 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_fasta.py -rw-r--r-- root/root 428 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_mira_xml.py -rw-r--r-- root/root 651 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_orfs_gff.py -rw-r--r-- root/root 4237 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_perfect_reads.py -rw-r--r-- root/root 1606 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_random_subset.py -rw-r--r-- root/root 3207 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_tiling_bam.py -rw-r--r-- root/root 593 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/to_unique_by_id.py -rw-r--r-- root/root 627 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/translate.py -rw-r--r-- root/root 507 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_Ns_at_end.py -rw-r--r-- root/root 766 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_contigs.py -rw-r--r-- root/root 648 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/trim_ends.py -rw-r--r-- root/root 71 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/runners/version.py -rw-r--r-- root/root 25087 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/sequences.py -rw-r--r-- root/root 29245 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/tasks.py -rw-r--r-- root/root 2277 2018-02-19 09:37 ./usr/lib/python3/dist-packages/pyfastaq/utils.py drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/share/ drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/share/doc/fastaq/ -rw-r--r-- root/root 672 2023-12-18 16:18 ./usr/share/doc/fastaq/changelog.Debian.gz -rw-r--r-- root/root 1202 2023-12-18 16:16 ./usr/share/doc/fastaq/copyright drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-18 16:18 ./usr/share/man/man1/ -rw-r--r-- root/root 356 2023-12-18 16:18 ./usr/share/man/man1/fastaq-acgtn_only.1.gz -rw-r--r-- root/root 654 2023-12-18 16:18 ./usr/share/man/man1/fastaq-add_indels.1.gz -rw-r--r-- root/root 461 2023-12-18 16:18 ./usr/share/man/man1/fastaq-caf_to_fastq.1.gz -rw-r--r-- root/root 494 2023-12-18 16:18 ./usr/share/man/man1/fastaq-capillary_to_pairs.1.gz -rw-r--r-- root/root 581 2023-12-18 16:18 ./usr/share/man/man1/fastaq-chunker.1.gz -rw-r--r-- root/root 324 2023-12-18 16:18 ./usr/share/man/man1/fastaq-count_sequences.1.gz -rw-r--r-- root/root 466 2023-12-18 16:18 ./usr/share/man/man1/fastaq-deinterleave.1.gz -rw-r--r-- root/root 514 2023-12-18 16:18 ./usr/share/man/man1/fastaq-enumerate_names.1.gz -rw-r--r-- root/root 430 2023-12-18 16:18 ./usr/share/man/man1/fastaq-expand_nucleotides.1.gz -rw-r--r-- root/root 341 2023-12-18 16:18 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./usr/share/man/man1/fastaq-sequence_trim.1.gz -rw-r--r-- root/root 335 2023-12-18 16:18 ./usr/share/man/man1/fastaq-sort_by_name.1.gz -rw-r--r-- root/root 382 2023-12-18 16:18 ./usr/share/man/man1/fastaq-sort_by_size.1.gz -rw-r--r-- root/root 485 2023-12-18 16:18 ./usr/share/man/man1/fastaq-split_by_base_count.1.gz -rw-r--r-- root/root 367 2023-12-18 16:18 ./usr/share/man/man1/fastaq-strip_illumina_suffix.1.gz -rw-r--r-- root/root 363 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_boulderio.1.gz -rw-r--r-- root/root 361 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_fake_qual.1.gz -rw-r--r-- root/root 537 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_fasta.1.gz -rw-r--r-- root/root 351 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_mira_xml.1.gz -rw-r--r-- root/root 395 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_orfs_gff.1.gz -rw-r--r-- root/root 664 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_perfect_reads.1.gz -rw-r--r-- root/root 544 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_random_subset.1.gz -rw-r--r-- root/root 597 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_tiling_bam.1.gz -rw-r--r-- root/root 429 2023-12-18 16:18 ./usr/share/man/man1/fastaq-to_unique_by_id.1.gz -rw-r--r-- root/root 388 2023-12-18 16:18 ./usr/share/man/man1/fastaq-translate.1.gz -rw-r--r-- root/root 387 2023-12-18 16:18 ./usr/share/man/man1/fastaq-trim_Ns_at_end.1.gz -rw-r--r-- root/root 467 2023-12-18 16:18 ./usr/share/man/man1/fastaq-trim_contigs.1.gz -rw-r--r-- root/root 375 2023-12-18 16:18 ./usr/share/man/man1/fastaq-trim_ends.1.gz -rw-r--r-- root/root 200 2023-12-18 16:18 ./usr/share/man/man1/fastaq-version.1.gz -rw-r--r-- root/root 1435 2023-12-18 16:18 ./usr/share/man/man1/fastaq.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 3020 Build-Time: 10 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 8 Job: fastaq_3.17.0-6.dsc Machine Architecture: amd64 Package: fastaq Package-Time: 19 Source-Version: 3.17.0-6 Space: 3020 Status: successful Version: 3.17.0-6 -------------------------------------------------------------------------------- Finished at 2023-12-18T23:18:02Z Build needed 00:00:19, 3020k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27574430 Scanning for processes to kill in build PACKAGEBUILD-27574430