RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep']
Forking launchpad-buildd slave process...
Kernel version: 2.6.35-30-powerpc64-smp #59-Ubuntu SMP Tue Aug 30 18:39:59 UTC 2011 ppc64
Buildd toolchain package versions: launchpad-buildd_110~0.IS.08.04 python-lpbuildd_110~0.IS.08.04 bzr_2.4.0-0ubuntu2~9.IS.10.04.3.
Syncing the system clock with the buildd NTP service...
 3 Jan 08:18:13 ntpdate[32519]: adjust time server 10.211.37.1 offset 0.000215 sec
RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '99d89ab89035c02e05c4222bbc639029306538cb', '/home/buildd/filecache-default/f03d4823c003d52fa3ea17e7128ad87818cef76c']
Unpacking chroot for build 99d89ab89035c02e05c4222bbc639029306538cb
RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '99d89ab89035c02e05c4222bbc639029306538cb']
Mounting chroot for build 99d89ab89035c02e05c4222bbc639029306538cb
RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '99d89ab89035c02e05c4222bbc639029306538cb', 'deb http://ftpmaster.internal/ubuntu precise main universe']
Overriding sources.list in build-99d89ab89035c02e05c4222bbc639029306538cb
RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '99d89ab89035c02e05c4222bbc639029306538cb', 'powerpc']
Updating debian chroot for build 99d89ab89035c02e05c4222bbc639029306538cb
Ign http://ftpmaster.internal precise InRelease
Get:1 http://ftpmaster.internal precise Release.gpg [198 B]
Get:2 http://ftpmaster.internal precise Release [49.6 kB]
Get:3 http://ftpmaster.internal precise/main powerpc Packages [1274 kB]
Get:4 http://ftpmaster.internal precise/universe powerpc Packages [4649 kB]
Get:5 http://ftpmaster.internal precise/main TranslationIndex [3502 B]
Get:6 http://ftpmaster.internal precise/universe TranslationIndex [2712 B]
Get:7 http://ftpmaster.internal precise/main Translation-en [718 kB]
Get:8 http://ftpmaster.internal precise/universe Translation-en [3321 kB]
Fetched 10.0 MB in 13s (769 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  libasn1-8-heimdal libgssapi3-heimdal libhcrypto4-heimdal
  libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal
  libkrb5-26-heimdal libroken18-heimdal libsqlite3-0 libwind0-heimdal
The following packages will be upgraded:
  base-files base-passwd bash binutils bsdutils busybox-initramfs bzip2
  coreutils cpp cpp-4.6 debconf debianutils dpkg dpkg-dev fakeroot g++ g++-4.6
  gcc gcc-4.6 gcc-4.6-base gnupg gpgv grep ifupdown initramfs-tools
  initramfs-tools-bin initscripts iproute klibc-utils libacl1
  libalgorithm-diff-xs-perl libattr1 libblkid1 libbz2-1.0 libc-bin
  libc-dev-bin libc6 libc6-dev libclass-isa-perl libcurl3-gnutls libdb5.1
  libdpkg-perl libgcc1 libglib2.0-0 libgmp10 libgnutls26 libgomp1
  libgssapi-krb5-2 libidn11 libk5crypto3 libklibc libkrb5-3 libkrb5support0
  libldap-2.4-2 libmount1 libmpfr4 libncurses5 libncursesw5 libp11-kit0
  libpciaccess0 libreadline6 libsasl2-2 libselinux1 libstdc++6
  libstdc++6-4.6-dev libtinfo5 libudev0 libuuid1 linux-libc-dev locales login
  lsb-base module-init-tools mount multiarch-support ncurses-base ncurses-bin
  passwd perl perl-base perl-modules pkg-create-dbgsym pkgbinarymangler procps
  python-minimal python2.7-minimal readline-common sysv-rc sysvinit-utils tar
  ubuntu-keyring udev util-linux
93 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
Need to get 60.7 MB of archives.
After this operation, 11.2 MB disk space will be freed.
WARNING: The following packages cannot be authenticated!
  base-files debianutils bash libc-dev-bin libc6-dev libc-bin libc6
  linux-libc-dev libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libstdc++6-4.6-dev
  g++-4.6 gcc-4.6 libstdc++6 libgmp10 libmpfr4 binutils libattr1 libacl1 dpkg
  coreutils grep login libselinux1 passwd libuuid1 libblkid1 libmount1 mount
  libncursesw5 libtinfo5 libncurses5 ncurses-bin perl
  libalgorithm-diff-xs-perl perl-base perl-modules libclass-isa-perl bzip2
  libbz2-1.0 libdb5.1 tar lsb-base debconf util-linux base-passwd bsdutils
  ncurses-base python2.7-minimal python-minimal readline-common libreadline6
  libsqlite3-0 libglib2.0-0 libpciaccess0 libudev0 module-init-tools
  libroken18-heimdal libasn1-8-heimdal libp11-kit0 libgnutls26
  libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libidn11
  libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal
  libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libsasl2-2
  libldap-2.4-2 libcurl3-gnutls gpgv gnupg ubuntu-keyring multiarch-support
  busybox-initramfs iproute sysvinit-utils sysv-rc initscripts ifupdown
  initramfs-tools initramfs-tools-bin klibc-utils libklibc procps udev locales
  cpp dpkg-dev libdpkg-perl fakeroot gcc g++ pkg-create-dbgsym
  pkgbinarymangler
Authentication warning overridden.
Get:1 http://ftpmaster.internal/ubuntu/ precise/main base-files powerpc 6.5ubuntu3 [56.0 kB]
Get:2 http://ftpmaster.internal/ubuntu/ precise/main debianutils powerpc 4.1 [63.0 kB]
Get:3 http://ftpmaster.internal/ubuntu/ precise/main bash powerpc 4.2-1ubuntu1 [607 kB]
Get:4 http://ftpmaster.internal/ubuntu/ precise/main libc-dev-bin powerpc 2.13-23ubuntu1 [78.9 kB]
Get:5 http://ftpmaster.internal/ubuntu/ precise/main libc6-dev powerpc 2.13-23ubuntu1 [2753 kB]
Get:6 http://ftpmaster.internal/ubuntu/ precise/main libc-bin powerpc 2.13-23ubuntu1 [1283 kB]
Get:7 http://ftpmaster.internal/ubuntu/ precise/main libc6 powerpc 2.13-23ubuntu1 [4161 kB]
Get:8 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev powerpc 3.2.0-7.13 [811 kB]
Get:9 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 powerpc 4.6.2-9ubuntu1 [26.1 kB]
Get:10 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base powerpc 4.6.2-9ubuntu1 [16.1 kB]
Get:11 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 powerpc 1:4.6.2-9ubuntu1 [42.9 kB]
Get:12 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 powerpc 4.6.2-9ubuntu1 [4631 kB]
Get:13 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev powerpc 4.6.2-9ubuntu1 [1647 kB]
Get:14 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 powerpc 4.6.2-9ubuntu1 [6124 kB]
Get:15 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 powerpc 4.6.2-9ubuntu1 [5179 kB]
Get:16 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 powerpc 4.6.2-9ubuntu1 [365 kB]
Get:17 http://ftpmaster.internal/ubuntu/ precise/main libgmp10 powerpc 2:5.0.2+dfsg-2ubuntu1 [222 kB]
Get:18 http://ftpmaster.internal/ubuntu/ precise/main libmpfr4 powerpc 3.1.0-3 [212 kB]
Get:19 http://ftpmaster.internal/ubuntu/ precise/main binutils powerpc 2.22-2ubuntu1 [2530 kB]
Get:20 http://ftpmaster.internal/ubuntu/ precise/main libattr1 powerpc 1:2.4.46-5ubuntu1 [10.6 kB]
Get:21 http://ftpmaster.internal/ubuntu/ precise/main libacl1 powerpc 2.2.51-5ubuntu1 [17.1 kB]
Get:22 http://ftpmaster.internal/ubuntu/ precise/main dpkg powerpc 1.16.1.2ubuntu5 [1799 kB]
Get:23 http://ftpmaster.internal/ubuntu/ precise/main coreutils powerpc 8.13-3ubuntu2 [2380 kB]
Get:24 http://ftpmaster.internal/ubuntu/ precise/main grep powerpc 2.10-1 [252 kB]
Get:25 http://ftpmaster.internal/ubuntu/ precise/main login powerpc 1:4.1.4.2+svn3283-3ubuntu3 [282 kB]
Get:26 http://ftpmaster.internal/ubuntu/ precise/main libselinux1 powerpc 2.1.0-4ubuntu1 [62.2 kB]
Get:27 http://ftpmaster.internal/ubuntu/ precise/main passwd powerpc 1:4.1.4.2+svn3283-3ubuntu3 [874 kB]
Get:28 http://ftpmaster.internal/ubuntu/ precise/main libuuid1 powerpc 2.20.1-1ubuntu1 [14.6 kB]
Get:29 http://ftpmaster.internal/ubuntu/ precise/main libblkid1 powerpc 2.20.1-1ubuntu1 [80.2 kB]
Get:30 http://ftpmaster.internal/ubuntu/ precise/main libmount1 powerpc 2.20.1-1ubuntu1 [67.9 kB]
Get:31 http://ftpmaster.internal/ubuntu/ precise/main mount powerpc 2.20.1-1ubuntu1 [170 kB]
Get:32 http://ftpmaster.internal/ubuntu/ precise/main libncursesw5 powerpc 5.9-4 [129 kB]
Get:33 http://ftpmaster.internal/ubuntu/ precise/main libtinfo5 powerpc 5.9-4 [93.3 kB]
Get:34 http://ftpmaster.internal/ubuntu/ precise/main libncurses5 powerpc 5.9-4 [103 kB]
Get:35 http://ftpmaster.internal/ubuntu/ precise/main ncurses-bin powerpc 5.9-4 [148 kB]
Get:36 http://ftpmaster.internal/ubuntu/ precise/main perl powerpc 5.14.2-6ubuntu1 [4024 kB]
Get:37 http://ftpmaster.internal/ubuntu/ precise/main libalgorithm-diff-xs-perl powerpc 0.04-2build2 [12.9 kB]
Get:38 http://ftpmaster.internal/ubuntu/ precise/main perl-base powerpc 5.14.2-6ubuntu1 [1437 kB]
Get:39 http://ftpmaster.internal/ubuntu/ precise/main perl-modules all 5.14.2-6ubuntu1 [3369 kB]
Get:40 http://ftpmaster.internal/ubuntu/ precise/main libclass-isa-perl all 0.36-3 [11.9 kB]
Get:41 http://ftpmaster.internal/ubuntu/ precise/main bzip2 powerpc 1.0.6-1 [36.9 kB]
Get:42 http://ftpmaster.internal/ubuntu/ precise/main libbz2-1.0 powerpc 1.0.6-1 [36.5 kB]
Get:43 http://ftpmaster.internal/ubuntu/ precise/main libdb5.1 powerpc 5.1.25-11build1 [690 kB]
Get:44 http://ftpmaster.internal/ubuntu/ precise/main tar powerpc 1.26-3ubuntu1 [216 kB]
Get:45 http://ftpmaster.internal/ubuntu/ precise/main lsb-base all 4.0-0ubuntu17 [10.5 kB]
Get:46 http://ftpmaster.internal/ubuntu/ precise/main debconf powerpc 1.5.41ubuntu1 [145 kB]
Get:47 http://ftpmaster.internal/ubuntu/ precise/main util-linux powerpc 2.20.1-1ubuntu1 [594 kB]
Get:48 http://ftpmaster.internal/ubuntu/ precise/main base-passwd powerpc 3.5.24 [38.5 kB]
Get:49 http://ftpmaster.internal/ubuntu/ precise/main bsdutils powerpc 1:2.20.1-1ubuntu1 [42.6 kB]
Get:50 http://ftpmaster.internal/ubuntu/ precise/main ncurses-base all 5.9-4 [21.0 kB]
Get:51 http://ftpmaster.internal/ubuntu/ precise/main python2.7-minimal powerpc 2.7.2-9 [1693 kB]
Get:52 http://ftpmaster.internal/ubuntu/ precise/main python-minimal all 2.7.2-9ubuntu2 [29.6 kB]
Get:53 http://ftpmaster.internal/ubuntu/ precise/main readline-common powerpc 6.2-8 [49.9 kB]
Get:54 http://ftpmaster.internal/ubuntu/ precise/main libreadline6 powerpc 6.2-8 [125 kB]
Get:55 http://ftpmaster.internal/ubuntu/ precise/main libsqlite3-0 powerpc 3.7.9-2ubuntu1 [343 kB]
Get:56 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-0 powerpc 2.31.4.tested-0ubuntu3 [1148 kB]
Get:57 http://ftpmaster.internal/ubuntu/ precise/main libpciaccess0 powerpc 0.12.902-1 [20.1 kB]
Get:58 http://ftpmaster.internal/ubuntu/ precise/main libudev0 powerpc 175-0ubuntu3 [29.7 kB]
Get:59 http://ftpmaster.internal/ubuntu/ precise/main module-init-tools powerpc 3.16-1ubuntu2 [99.1 kB]
Get:60 http://ftpmaster.internal/ubuntu/ precise/main libroken18-heimdal powerpc 1.5.dfsg.1-3 [45.9 kB]
Get:61 http://ftpmaster.internal/ubuntu/ precise/main libasn1-8-heimdal powerpc 1.5.dfsg.1-3 [180 kB]
Get:62 http://ftpmaster.internal/ubuntu/ precise/main libp11-kit0 powerpc 0.9-3 [31.6 kB]
Get:63 http://ftpmaster.internal/ubuntu/ precise/main libgnutls26 powerpc 2.12.14-5 [419 kB]
Get:64 http://ftpmaster.internal/ubuntu/ precise/main libgssapi-krb5-2 powerpc 1.10+dfsg~alpha1-6ubuntu1 [111 kB]
Get:65 http://ftpmaster.internal/ubuntu/ precise/main libk5crypto3 powerpc 1.10+dfsg~alpha1-6ubuntu1 [84.4 kB]
Get:66 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-3 powerpc 1.10+dfsg~alpha1-6ubuntu1 [348 kB]
Get:67 http://ftpmaster.internal/ubuntu/ precise/main libkrb5support0 powerpc 1.10+dfsg~alpha1-6ubuntu1 [22.9 kB]
Get:68 http://ftpmaster.internal/ubuntu/ precise/main libidn11 powerpc 1.23-2 [115 kB]
Get:69 http://ftpmaster.internal/ubuntu/ precise/main libhcrypto4-heimdal powerpc 1.5.dfsg.1-3 [101 kB]
Get:70 http://ftpmaster.internal/ubuntu/ precise/main libheimbase1-heimdal powerpc 1.5.dfsg.1-3 [11.1 kB]
Get:71 http://ftpmaster.internal/ubuntu/ precise/main libwind0-heimdal powerpc 1.5.dfsg.1-3 [84.3 kB]
Get:72 http://ftpmaster.internal/ubuntu/ precise/main libhx509-5-heimdal powerpc 1.5.dfsg.1-3 [117 kB]
Get:73 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-26-heimdal powerpc 1.5.dfsg.1-3 [206 kB]
Get:74 http://ftpmaster.internal/ubuntu/ precise/main libheimntlm0-heimdal powerpc 1.5.dfsg.1-3 [15.7 kB]
Get:75 http://ftpmaster.internal/ubuntu/ precise/main libgssapi3-heimdal powerpc 1.5.dfsg.1-3 [104 kB]
Get:76 http://ftpmaster.internal/ubuntu/ precise/main libsasl2-2 powerpc 2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3 [64.7 kB]
Get:77 http://ftpmaster.internal/ubuntu/ precise/main libldap-2.4-2 powerpc 2.4.25-4ubuntu1 [174 kB]
Get:78 http://ftpmaster.internal/ubuntu/ precise/main libcurl3-gnutls powerpc 7.22.0-3ubuntu1 [230 kB]
Get:79 http://ftpmaster.internal/ubuntu/ precise/main gpgv powerpc 1.4.11-3ubuntu2 [175 kB]
Get:80 http://ftpmaster.internal/ubuntu/ precise/main gnupg powerpc 1.4.11-3ubuntu2 [787 kB]
Get:81 http://ftpmaster.internal/ubuntu/ precise/main ubuntu-keyring powerpc 2011.11.21 [11.4 kB]
Get:82 http://ftpmaster.internal/ubuntu/ precise/main multiarch-support powerpc 2.13-23ubuntu1 [4480 B]
Get:83 http://ftpmaster.internal/ubuntu/ precise/main busybox-initramfs powerpc 1:1.18.5-1ubuntu2 [179 kB]
Get:84 http://ftpmaster.internal/ubuntu/ precise/main iproute powerpc 20111117-1 [431 kB]
Get:85 http://ftpmaster.internal/ubuntu/ precise/main sysvinit-utils powerpc 2.88dsf-13.10ubuntu8 [60.3 kB]
Get:86 http://ftpmaster.internal/ubuntu/ precise/main sysv-rc all 2.88dsf-13.10ubuntu8 [44.0 kB]
Get:87 http://ftpmaster.internal/ubuntu/ precise/main initscripts powerpc 2.88dsf-13.10ubuntu8 [27.5 kB]
Get:88 http://ftpmaster.internal/ubuntu/ precise/main ifupdown powerpc 0.7~alpha5.1ubuntu6 [46.2 kB]
Get:89 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools powerpc 0.99ubuntu9 [48.6 kB]
Get:90 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools-bin powerpc 0.99ubuntu9 [11.9 kB]
Get:91 http://ftpmaster.internal/ubuntu/ precise/main klibc-utils powerpc 1.5.25-1ubuntu1 [171 kB]
Get:92 http://ftpmaster.internal/ubuntu/ precise/main libklibc powerpc 1.5.25-1ubuntu1 [47.9 kB]
Get:93 http://ftpmaster.internal/ubuntu/ precise/main procps powerpc 1:3.2.8-11ubuntu6 [228 kB]
Get:94 http://ftpmaster.internal/ubuntu/ precise/main udev powerpc 175-0ubuntu3 [316 kB]
Get:95 http://ftpmaster.internal/ubuntu/ precise/main locales all 2.13+git20111116-1 [3349 kB]
Get:96 http://ftpmaster.internal/ubuntu/ precise/main cpp powerpc 4:4.6.2-2ubuntu1 [27.8 kB]
Get:97 http://ftpmaster.internal/ubuntu/ precise/main dpkg-dev powerpc 1.16.1.2ubuntu5 [468 kB]
Get:98 http://ftpmaster.internal/ubuntu/ precise/main libdpkg-perl powerpc 1.16.1.2ubuntu5 [181 kB]
Get:99 http://ftpmaster.internal/ubuntu/ precise/main fakeroot powerpc 1.18.2-1 [84.7 kB]
Get:100 http://ftpmaster.internal/ubuntu/ precise/main gcc powerpc 4:4.6.2-2ubuntu1 [5120 B]
Get:101 http://ftpmaster.internal/ubuntu/ precise/main g++ powerpc 4:4.6.2-2ubuntu1 [1448 B]
Get:102 http://ftpmaster.internal/ubuntu/ precise/main pkg-create-dbgsym all 0.50 [8334 B]
Get:103 http://ftpmaster.internal/ubuntu/ precise/main pkgbinarymangler all 110 [29.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 60.7 MB in 6s (10.0 MB/s)
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace base-files 6.5ubuntu2 (using .../base-files_6.5ubuntu3_powerpc.deb) ...
Unpacking replacement base-files ...
Setting up base-files (6.5ubuntu3) ...
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace debianutils 4.0.4 (using .../debianutils_4.1_powerpc.deb) ...
Unpacking replacement debianutils ...
Setting up debianutils (4.1) ...
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace bash 4.2-0ubuntu4 (using .../bash_4.2-1ubuntu1_powerpc.deb) ...
Unpacking replacement bash ...
Setting up bash (4.2-1ubuntu1) ...
Installing new version of config file /etc/skel/.bashrc ...
update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode.
(Reading database ... 14061 files and directories currently installed.)
Preparing to replace libc-dev-bin 2.13-20ubuntu5 (using .../libc-dev-bin_2.13-23ubuntu1_powerpc.deb) ...
Unpacking replacement libc-dev-bin ...
Preparing to replace libc6-dev 2.13-20ubuntu5 (using .../libc6-dev_2.13-23ubuntu1_powerpc.deb) ...
Unpacking replacement libc6-dev ...
Preparing to replace libc-bin 2.13-20ubuntu5 (using .../libc-bin_2.13-23ubuntu1_powerpc.deb) ...
Unpacking replacement libc-bin ...
Setting up libc-bin (2.13-23ubuntu1) ...
(Reading database ... 14061 files and directories currently installed.)
Preparing to replace libc6 2.13-20ubuntu5 (using .../libc6_2.13-23ubuntu1_powerpc.deb) ...
Unpacking replacement libc6 ...
Setting up libc6 (2.13-23ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14061 files and directories currently installed.)
Preparing to replace linux-libc-dev 3.1.0-2.3 (using .../linux-libc-dev_3.2.0-7.13_powerpc.deb) ...
Unpacking replacement linux-libc-dev ...
Preparing to replace libgomp1 4.6.2-2ubuntu1 (using .../libgomp1_4.6.2-9ubuntu1_powerpc.deb) ...
Unpacking replacement libgomp1 ...
Preparing to replace gcc-4.6-base 4.6.2-2ubuntu1 (using .../gcc-4.6-base_4.6.2-9ubuntu1_powerpc.deb) ...
Unpacking replacement gcc-4.6-base ...
Setting up gcc-4.6-base (4.6.2-9ubuntu1) ...
(Reading database ... 14062 files and directories currently installed.)
Preparing to replace libgcc1 1:4.6.2-2ubuntu1 (using .../libgcc1_1%3a4.6.2-9ubuntu1_powerpc.deb) ...
Unpacking replacement libgcc1 ...
Setting up libgcc1 (1:4.6.2-9ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14062 files and directories currently installed.)
Preparing to replace cpp-4.6 4.6.2-2ubuntu1 (using .../cpp-4.6_4.6.2-9ubuntu1_powerpc.deb) ...
Unpacking replacement cpp-4.6 ...
Preparing to replace libstdc++6-4.6-dev 4.6.2-2ubuntu1 (using .../libstdc++6-4.6-dev_4.6.2-9ubuntu1_powerpc.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
Preparing to replace g++-4.6 4.6.2-2ubuntu1 (using .../g++-4.6_4.6.2-9ubuntu1_powerpc.deb) ...
Unpacking replacement g++-4.6 ...
Preparing to replace gcc-4.6 4.6.2-2ubuntu1 (using .../gcc-4.6_4.6.2-9ubuntu1_powerpc.deb) ...
Unpacking replacement gcc-4.6 ...
Preparing to replace libstdc++6 4.6.2-2ubuntu1 (using .../libstdc++6_4.6.2-9ubuntu1_powerpc.deb) ...
Unpacking replacement libstdc++6 ...
Setting up libstdc++6 (4.6.2-9ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace libgmp10 2:5.0.2+dfsg-1ubuntu1 (using .../libgmp10_2%3a5.0.2+dfsg-2ubuntu1_powerpc.deb) ...
Unpacking replacement libgmp10 ...
Preparing to replace libmpfr4 3.1.0-2 (using .../libmpfr4_3.1.0-3_powerpc.deb) ...
Unpacking replacement libmpfr4 ...
Preparing to replace binutils 2.21.90.20111025-1ubuntu1 (using .../binutils_2.22-2ubuntu1_powerpc.deb) ...
Unpacking replacement binutils ...
Preparing to replace libattr1 1:2.4.46-3 (using .../libattr1_1%3a2.4.46-5ubuntu1_powerpc.deb) ...
Unpacking replacement libattr1 ...
Setting up libattr1 (1:2.4.46-5ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace libacl1 2.2.51-3 (using .../libacl1_2.2.51-5ubuntu1_powerpc.deb) ...
Unpacking replacement libacl1 ...
Setting up libacl1 (2.2.51-5ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace dpkg 1.16.1.1ubuntu3 (using .../dpkg_1.16.1.2ubuntu5_powerpc.deb) ...
Unpacking replacement dpkg ...
Setting up dpkg (1.16.1.2ubuntu5) ...
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace coreutils 8.13-3ubuntu1 (using .../coreutils_8.13-3ubuntu2_powerpc.deb) ...
Unpacking replacement coreutils ...
Setting up coreutils (8.13-3ubuntu2) ...
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace grep 2.9-2 (using .../grep_2.10-1_powerpc.deb) ...
Unpacking replacement grep ...
Setting up grep (2.10-1) ...
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace login 1:4.1.4.2+svn3283-3ubuntu2 (using .../login_1%3a4.1.4.2+svn3283-3ubuntu3_powerpc.deb) ...
Unpacking replacement login ...
Setting up login (1:4.1.4.2+svn3283-3ubuntu3) ...
Installing new version of config file /etc/securetty ...
(Reading database ... 14060 files and directories currently installed.)
Preparing to replace libselinux1 2.1.0-1 (using .../libselinux1_2.1.0-4ubuntu1_powerpc.deb) ...
Unpacking replacement libselinux1 ...
Setting up libselinux1 (2.1.0-4ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14060 files and directories currently installed.)
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gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key <ftpmaster@ubuntu.com>" not changed
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gpg: Total number processed: 2
gpg:              unchanged: 2
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Setting up libsasl2-2 (2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3) ...
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guest environment detected: Linking /run/shm to /dev/shm
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invoke-rc.d: policy-rc.d denied execution of start.
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Setting up cpp (4:4.6.2-2ubuntu1) ...
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Setting up gcc (4:4.6.2-2ubuntu1) ...
Setting up pkg-create-dbgsym (0.50) ...
Setting up pkgbinarymangler (110) ...
Installing new version of config file /etc/pkgbinarymangler/striptranslations.blacklist ...
Setting up libstdc++6-4.6-dev (4.6.2-9ubuntu1) ...
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invoke-rc.d: policy-rc.d denied execution of restart.
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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '99d89ab89035c02e05c4222bbc639029306538cb', 'powerpc', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=universe', 'fastlink_4.1P-fix95-3.dsc']
Initiating build 99d89ab89035c02e05c4222bbc639029306538cb with 2 processor cores.
Automatic build of fastlink_4.1P-fix95-3 on ross by sbuild/powerpc 1.170.5
Build started at 20120103-0820
******************************************************************************
fastlink_4.1P-fix95-3.dsc exists in cwd
** Using build dependencies supplied by package:
Build-Depends: cdbs, debhelper (>= 8)
Checking for already installed source dependencies...
cdbs: missing
debhelper: missing
Checking for source dependency conflicts...
  /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  autoconf automake autotools-dev bsdmainutils dh-translations file gettext
  gettext-base groff-base html2text intltool intltool-debian libcroco3
  libdb4.8 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0
  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl
  liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl
  libpipeline1 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl
  libxml-parser-perl libxml2 m4 man-db mime-support po-debconf python
  python-scour python2.7
Suggested packages:
  autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican
  wordlist whois vacation devscripts dh-make gettext-doc groff
  libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl less www-browser
  libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc
Recommended packages:
  curl wget lynx-cur libio-socket-inet6-perl libhtml-form-perl
  libhtml-format-perl libhttp-daemon-perl libmailtools-perl xml-core
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-translations
  file gettext gettext-base groff-base html2text intltool intltool-debian
  libcroco3 libdb4.8 libencode-locale-perl libexpat1 libfile-listing-perl
  libgettextpo0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl
  liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl
  libpipeline1 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl
  libxml-parser-perl libxml2 m4 man-db mime-support po-debconf python
  python-scour python2.7
0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
Need to get 11.9 MB of archives.
After this operation, 38.3 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  libdb4.8 libexpat1 libpipeline1 libxml2 libcroco3 libunistring0
  libgettextpo0 libmagic1 file mime-support python2.7 python bsdmainutils
  gettext-base groff-base man-db m4 autoconf autotools-dev automake html2text
  gettext intltool-debian po-debconf debhelper liburi-perl
  libencode-locale-perl libhttp-date-perl libfile-listing-perl
  libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl
  liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl
  libhttp-negotiate-perl libnet-http-perl libnet-ssleay-perl
  libio-socket-ssl-perl liblwp-protocol-https-perl libwww-robotrules-perl
  libwww-perl libxml-parser-perl intltool dh-translations python-scour cdbs
Authentication warning overridden.
Get:1 http://ftpmaster.internal/ubuntu/ precise/main libdb4.8 powerpc 4.8.30-11 [665 kB]
Get:2 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 powerpc 2.0.1-7.2 [132 kB]
Get:3 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 powerpc 1.2.0-5 [25.7 kB]
Get:4 http://ftpmaster.internal/ubuntu/ precise/main libxml2 powerpc 2.7.8.dfsg-5ubuntu1 [619 kB]
Get:5 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 powerpc 0.6.2-2 [92.7 kB]
Get:6 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 powerpc 0.9.3-5 [409 kB]
Get:7 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 powerpc 0.18.1.1-5ubuntu3 [113 kB]
Get:8 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 powerpc 5.09-2 [224 kB]
Get:9 http://ftpmaster.internal/ubuntu/ precise/main file powerpc 5.09-2 [19.6 kB]
Get:10 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB]
Get:11 http://ftpmaster.internal/ubuntu/ precise/main python2.7 powerpc 2.7.2-9 [2558 kB]
Get:12 http://ftpmaster.internal/ubuntu/ precise/main python all 2.7.2-9ubuntu2 [168 kB]
Get:13 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils powerpc 8.2.3 [197 kB]
Get:14 http://ftpmaster.internal/ubuntu/ precise/main gettext-base powerpc 0.18.1.1-5ubuntu3 [57.1 kB]
Get:15 http://ftpmaster.internal/ubuntu/ precise/main groff-base powerpc 1.21-6 [1044 kB]
Get:16 http://ftpmaster.internal/ubuntu/ precise/main man-db powerpc 2.6.0.2-3 [721 kB]
Get:17 http://ftpmaster.internal/ubuntu/ precise/main m4 powerpc 1.4.16-2ubuntu1 [192 kB]
Get:18 http://ftpmaster.internal/ubuntu/ precise/main autoconf powerpc 2.68-1ubuntu2 [560 kB]
Get:19 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20110511.1 [44.7 kB]
Get:20 http://ftpmaster.internal/ubuntu/ precise/main automake powerpc 1:1.11.1-1ubuntu2 [544 kB]
Get:21 http://ftpmaster.internal/ubuntu/ precise/main html2text powerpc 1.3.2a-15 [106 kB]
Get:22 http://ftpmaster.internal/ubuntu/ precise/main gettext powerpc 0.18.1.1-5ubuntu3 [1131 kB]
Get:23 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB]
Get:24 http://ftpmaster.internal/ubuntu/ precise/main po-debconf powerpc 1.0.16+nmu1ubuntu1 [211 kB]
Get:25 http://ftpmaster.internal/ubuntu/ precise/main debhelper powerpc 8.9.9ubuntu1 [477 kB]
Get:26 http://ftpmaster.internal/ubuntu/ precise/main liburi-perl all 1.59-1 [90.3 kB]
Get:27 http://ftpmaster.internal/ubuntu/ precise/main libencode-locale-perl all 1.02-2 [12.0 kB]
Get:28 http://ftpmaster.internal/ubuntu/ precise/main libhttp-date-perl all 6.00-1 [10.1 kB]
Get:29 http://ftpmaster.internal/ubuntu/ precise/main libfile-listing-perl all 6.03-1 [9690 B]
Get:30 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tagset-perl all 3.20-2 [13.5 kB]
Get:31 http://ftpmaster.internal/ubuntu/ precise/main libhtml-parser-perl powerpc 3.69-1build1 [97.0 kB]
Get:32 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tree-perl all 4.2-1 [205 kB]
Get:33 http://ftpmaster.internal/ubuntu/ precise/main liblwp-mediatypes-perl all 6.01-1 [17.5 kB]
Get:34 http://ftpmaster.internal/ubuntu/ precise/main libhttp-message-perl all 6.01-1 [77.6 kB]
Get:35 http://ftpmaster.internal/ubuntu/ precise/main libhttp-cookies-perl all 6.00-2 [23.3 kB]
Get:36 http://ftpmaster.internal/ubuntu/ precise/main libhttp-negotiate-perl all 6.00-2 [13.4 kB]
Get:37 http://ftpmaster.internal/ubuntu/ precise/main libnet-http-perl all 6.02-1 [23.5 kB]
Get:38 http://ftpmaster.internal/ubuntu/ precise/main libnet-ssleay-perl powerpc 1.42-1build1 [186 kB]
Get:39 http://ftpmaster.internal/ubuntu/ precise/main libio-socket-ssl-perl all 1.53-1 [47.5 kB]
Get:40 http://ftpmaster.internal/ubuntu/ precise/main liblwp-protocol-https-perl all 6.02-1 [6746 B]
Get:41 http://ftpmaster.internal/ubuntu/ precise/main libwww-robotrules-perl all 6.01-1 [14.1 kB]
Get:42 http://ftpmaster.internal/ubuntu/ precise/main libwww-perl all 6.03-1 [156 kB]
Get:43 http://ftpmaster.internal/ubuntu/ precise/main libxml-parser-perl powerpc 2.41-1build1 [263 kB]
Get:44 http://ftpmaster.internal/ubuntu/ precise/main intltool all 0.50.0-0ubuntu2 [101 kB]
Get:45 http://ftpmaster.internal/ubuntu/ precise/main dh-translations all 110 [21.1 kB]
Get:46 http://ftpmaster.internal/ubuntu/ precise/main python-scour all 0.26-2build1 [46.4 kB]
Get:47 http://ftpmaster.internal/ubuntu/ precise/main cdbs all 0.4.100ubuntu1 [47.7 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 11.9 MB in 1s (9275 kB/s)
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Setting up libdb4.8 (4.8.30-11) ...
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Setting up libxml2 (2.7.8.dfsg-5ubuntu1) ...
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Setting up libmagic1 (5.09-2) ...
Setting up file (5.09-2) ...
Setting up mime-support (3.51-1ubuntu1) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode.
Setting up python2.7 (2.7.2-9) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up gettext-base (0.18.1.1-5ubuntu3) ...
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-3) ...
Building database of manual pages ...
Setting up m4 (1.4.16-2ubuntu1) ...
Setting up autoconf (2.68-1ubuntu2) ...
Setting up autotools-dev (20110511.1) ...
Setting up automake (1:1.11.1-1ubuntu2) ...
update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode.
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Setting up gettext (0.18.1.1-5ubuntu3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
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Setting up libfile-listing-perl (6.03-1) ...
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Setting up libhtml-parser-perl (3.69-1build1) ...
Setting up libhtml-tree-perl (4.2-1) ...
Setting up liblwp-mediatypes-perl (6.01-1) ...
Setting up libhttp-message-perl (6.01-1) ...
Setting up libhttp-cookies-perl (6.00-2) ...
Setting up libhttp-negotiate-perl (6.00-2) ...
Setting up libnet-http-perl (6.02-1) ...
Setting up libnet-ssleay-perl (1.42-1build1) ...
Setting up libio-socket-ssl-perl (1.53-1) ...
Setting up libwww-robotrules-perl (6.01-1) ...
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Setting up liblwp-protocol-https-perl (6.02-1) ...
Setting up libwww-perl (6.03-1) ...
Setting up libxml-parser-perl (2.41-1build1) ...
Setting up intltool (0.50.0-0ubuntu2) ...
Setting up dh-translations (110) ...
Setting up cdbs (0.4.100ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Checking correctness of source dependencies...
Toolchain package versions: libc6-dev_2.13-23ubuntu1 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu5 gcc-4.6_4.6.2-9ubuntu1 g++-4.6_4.6.2-9ubuntu1 binutils_2.22-2ubuntu1 libstdc++6-4.6-dev_4.6.2-9ubuntu1 libstdc++6_4.6.2-9ubuntu1
------------------------------------------------------------------------------
dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt
gpgv: Signature made Mon Dec 19 09:49:19 2011 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./fastlink_4.1P-fix95-3.dsc
dpkg-source: info: extracting fastlink in fastlink-4.1P-fix95
dpkg-source: info: unpacking fastlink_4.1P-fix95.orig.tar.gz
dpkg-source: info: unpacking fastlink_4.1P-fix95-3.debian.tar.gz
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro
dpkg-buildpackage: source package fastlink
dpkg-buildpackage: source version 4.1P-fix95-3
 dpkg-source --before-build fastlink-4.1P-fix95
dpkg-buildpackage: host architecture powerpc
 /usr/bin/fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
cd 4.1P/src;  make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" -k clean
make[1]: Entering directory `/build/buildd/fastlink-4.1P-fix95/4.1P/src'
rm -f *.o
make[1]: Leaving directory `/build/buildd/fastlink-4.1P-fix95/4.1P/src'
dh_clean 
cd 4.1P/src; make allclean
make[1]: Entering directory `/build/buildd/fastlink-4.1P-fix95/4.1P/src'
rm -f *.o
rm -f \
	parilcominputcode.o parilcomlike.o parilcommoncode.o parilcompar.o parilcomrec.o parilgetvect.o parilink.o parilinputcode.o pariliostuff.o parilmodified.o pariloldnuclear.o parmlcheck.o parmlcominputcode.o parmlcomlike.o parmlcommoncode.o parmlcomoutput.o parmlcompar.o parmlcomrec.o parmlgetvect.o parmlink.o parmlinputcode.o parmliostuff.o parmlmodified.o parmloldnuclear.o parmloutbuff.o parmlstrbuff.o parlicheck.o parlicominputcode.o parlicomlike.o parlicommoncode.o parlicomoutput.o parlicompar.o parlicomrec.o parligetvect.o parliinputcode.o parliiostuff.o parlimodified.o parlinkmap.o parlioldnuclear.o parlioutbuff.o parlistrbuff.o \
	.//*.atm .//*.udp .//*.p4
rm -f .//lodscore .//ilink .//linkmap .//mlink .//slowlodscore .//slowilink .//slowlinkmap .//slowmlink .//ofm .//unknown
make[1]: Leaving directory `/build/buildd/fastlink-4.1P-fix95/4.1P/src'
 debian/rules build
test -x debian/rules
mkdir -p "."
cd 4.1P/src;  make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" 
make[1]: Entering directory `/build/buildd/fastlink-4.1P-fix95/4.1P/src'
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLODSCORE -c iostuff.c -o loiostuff.o
iostuff.c: In function 'check_constants':
iostuff.c:100:13: warning: unused variable 'l' [-Wunused-variable]
iostuff.c: In function 'read_till_blank_line':
iostuff.c:273:1: warning: no return statement in function returning non-void [-Wreturn-type]
iostuff.c: In function 'init_ped_loc_all':
iostuff.c:379:15: warning: variable 'templocus' set but not used [-Wunused-but-set-variable]
iostuff.c: At top level:
iostuff.c:257:12: warning: 'read_till_blank_line' defined but not used [-Wunused-function]
iostuff.c: In function 'foundped':
iostuff.c:319:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
iostuff.c: In function 'check_constants':
iostuff.c:162:72: warning: 'worst_ped' may be used uninitialized in this function [-Wuninitialized]
iostuff.c: In function 'adjust_alleles':
iostuff.c:517:31: warning: 'cond_present_freq_sum' may be used uninitialized in this function [-Wuninitialized]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLODSCORE -c check.c -o locheck.o
check.c: In function 'recoveryErrorHelp':
check.c:117:11: warning: unused variable 'helpTextFile' [-Wunused-variable]
check.c: In function 'recoverCheckpoint':
check.c:584:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
check.c:592:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c:594:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c:595:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'getCkptNumber':
check.c:427:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'getCkptTuple':
check.c:194:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'recoveryErrorHelp':
check.c:175:8: warning: ignoring return value of 'gets', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'fileErrorHelp':
check.c:57:8: warning: ignoring return value of 'gets', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLODSCORE -c comrec.c -o locomrec.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLODSCORE -c logetvect.c -o logetvect.o
In file included from logetvect.c:85:0:
comgetvect.c: In function 'prior':
comgetvect.c:65:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:68:6: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:100:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:108:4: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:112:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c: In function 'quanval_':
comgetvect.c:881:15: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
comgetvect.c: In function 'aff_':
comgetvect.c:960:15: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLODSCORE -c loinputcode.c -o loinputcode.o
loinputcode.c: In function 'readloci':
loinputcode.c:1615:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1633:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1643:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1648:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1655:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1700:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1708:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1710:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1716:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1722:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1728:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'gettheta':
loinputcode.c:1594:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1597:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'getlocus':
loinputcode.c:1472:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1500:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1503:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1527:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1531:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1577:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'getbin':
loinputcode.c:1296:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1313:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1318:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'getpen':
loinputcode.c:1347:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1359:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1368:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1382:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1389:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'getquan':
loinputcode.c:1408:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1420:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1425:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1433:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1439:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1443:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'readped':
loinputcode.c:1185:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1206:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1217:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1235:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1238:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'getind':
loinputcode.c:1123:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'readnumber':
loinputcode.c:947:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'readbin':
loinputcode.c:920:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'readquan':
loinputcode.c:1032:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1041:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1053:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'readaff':
loinputcode.c:996:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c:1011:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loinputcode.c: In function 'readped':
loinputcode.c:982:18: warning: 'allsecond' may be used uninitialized in this function [-Wuninitialized]
loinputcode.c:941:17: note: 'allsecond' was declared here
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLODSCORE -c looldnuclear.c -o looldnuclear.o
In file included from comnuclear.c:1316:0,
                 from looldnuclear.c:36:
oldsegup.c: In function 'oldsegsexup':
oldsegup.c:11:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
oldsegup.c: In function 'oldsegup':
oldsegup.c:76:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
In file included from looldnuclear.c:36:0:
comnuclear.c: In function 'msegsexdown':
comnuclear.c:1324:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable]
comnuclear.c: In function 'msegdown':
comnuclear.c:1420:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c automodified.c -o automodified.o
automodified.c: In function 'segsum3':
automodified.c:186:20: warning: variable 'TEMPGENE2' set but not used [-Wunused-but-set-variable]
automodified.c:186:8: warning: variable 'TEMPGENE1' set but not used [-Wunused-but-set-variable]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLODSCORE -c comlike.c -o locomlike.o
comlike.c: In function 'recompute_haps':
comlike.c:363:7: warning: unused variable 'locidx' [-Wunused-variable]
comlike.c:362:16: warning: variable 'tempfgeno' set but not used [-Wunused-but-set-variable]
comlike.c: In function 'computenumhaps':
comlike.c:456:15: warning: unused variable 'locus2' [-Wunused-variable]
comlike.c:456:7: warning: unused variable 'locus1' [-Wunused-variable]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c sexmodified.c -o sexmodified.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLODSCORE -c lodscore.c -o lodscore.o
lodscore.c: In function 'main':
lodscore.c:2095:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
lodscore.c:2205:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
lodscore.c: In function 'inib':
lodscore.c:1379:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
lodscore.c: In function 'gemini':
lodscore.c:1614:17: warning: array subscript is below array bounds [-Warray-bounds]
lodscore.c:1614:28: warning: array subscript is below array bounds [-Warray-bounds]
lodscore.c:1614:6: warning: array subscript is below array bounds [-Warray-bounds]
lodscore.c:1720:34: warning: 'jk' may be used uninitialized in this function [-Wuninitialized]
lodscore.c:1694:24: note: 'jk' was declared here
lodscore.c:1720:26: warning: 'ii' may be used uninitialized in this function [-Wuninitialized]
lodscore.c:1694:20: note: 'ii' was declared here
lodscore.c:1720:12: warning: 'ik' may be used uninitialized in this function [-Wuninitialized]
lodscore.c:1694:16: note: 'ik' was declared here
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall loiostuff.o locheck.o locomrec.o logetvect.o loinputcode.o looldnuclear.o automodified.o locomlike.o sexmodified.o lodscore.o -o .//lodscore -lm
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c iostuff.c -o iliostuff.o
iostuff.c: In function 'read_till_blank_line':
iostuff.c:273:1: warning: no return statement in function returning non-void [-Wreturn-type]
iostuff.c: In function 'init_ped_loc_all':
iostuff.c:379:15: warning: variable 'templocus' set but not used [-Wunused-but-set-variable]
iostuff.c: At top level:
iostuff.c:257:12: warning: 'read_till_blank_line' defined but not used [-Wunused-function]
iostuff.c: In function 'foundped':
iostuff.c:319:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
iostuff.c: In function 'check_constants':
iostuff.c:195:72: warning: 'worst_ped' may be used uninitialized in this function [-Wuninitialized]
iostuff.c: In function 'adjust_alleles':
iostuff.c:517:31: warning: 'cond_present_freq_sum' may be used uninitialized in this function [-Wuninitialized]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c check.c -o ilcheck.o
check.c: In function 'recoveryErrorHelp':
check.c:117:11: warning: unused variable 'helpTextFile' [-Wunused-variable]
check.c: In function 'recoverCheckpoint':
check.c:584:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
check.c:592:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c:594:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c:595:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'getCkptNumber':
check.c:427:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'getCkptTuple':
check.c:194:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'recoveryErrorHelp':
check.c:175:8: warning: ignoring return value of 'gets', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'fileErrorHelp':
check.c:57:8: warning: ignoring return value of 'gets', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c cominputcode.c -o ilcominputcode.o
cominputcode.c: In function 'readped':
cominputcode.c:1544:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
cominputcode.c: In function 'gettheta':
cominputcode.c:1984:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1986:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1987:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1990:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getlocus':
cominputcode.c:1825:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1858:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1861:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1885:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1893:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1897:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1899:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1946:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getbin':
cominputcode.c:1656:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1673:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1678:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getpen':
cominputcode.c:1707:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1719:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1728:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1736:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1743:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getquan':
cominputcode.c:1761:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1773:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1778:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1786:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1792:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1796:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readped':
cominputcode.c:1510:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1531:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1542:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1575:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1578:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getind':
cominputcode.c:1436:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readnumber':
cominputcode.c:1192:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readbin':
cominputcode.c:1165:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readquan':
cominputcode.c:1278:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1288:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1300:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readaff':
cominputcode.c:1241:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1256:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'read_loop_file':
cominputcode.c:933:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:978:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1037:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readped':
cominputcode.c:1226:18: warning: 'allsecond' may be used uninitialized in this function [-Wuninitialized]
cominputcode.c:1186:17: note: 'allsecond' was declared here
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c comrec.c -o ilcomrec.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c ilgetvect.c -o ilgetvect.o
In file included from ilgetvect.c:87:0:
comgetvect.c: In function 'prior':
comgetvect.c:71:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:74:6: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:117:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:120:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:125:4: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:129:3: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c ilinputcode.c -o ilinputcode.o
ilinputcode.c: In function 'readloci':
ilinputcode.c:395:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c:422:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c:439:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c:452:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c:474:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c:475:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c:489:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c:496:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c: In function 'setiterate':
ilinputcode.c:178:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilinputcode.c:358:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c iloldnuclear.c -o iloldnuclear.o
In file included from comnuclear.c:1316:0,
                 from iloldnuclear.c:37:
oldsegup.c: In function 'oldsegsexup':
oldsegup.c:11:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
oldsegup.c: In function 'oldsegup':
oldsegup.c:76:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
In file included from iloldnuclear.c:37:0:
comnuclear.c: In function 'msegsexdown':
comnuclear.c:1324:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable]
comnuclear.c: In function 'msegdown':
comnuclear.c:1420:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -c comlike.c -o comlike.o
comlike.c: In function 'recompute_haps':
comlike.c:362:16: warning: variable 'tempfgeno' set but not used [-Wunused-but-set-variable]
comlike.c: In function 'find_loopbreaker_genotypes':
comlike.c:1434:16: warning: 'temploopmax' may be used uninitialized in this function [-Wuninitialized]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c commoncode.c -o ilcommoncode.o
commoncode.c: In function 'ckptEnsureFileContents':
commoncode.c:383:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
commoncode.c: In function 'ckptInit':
commoncode.c:289:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DILINK -c ilink.c -o ilink.o
ilink.c: In function 'inib':
ilink.c:1560:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
ilink.c: In function 'gemini':
ilink.c:2243:17: warning: array subscript is below array bounds [-Warray-bounds]
ilink.c:2243:28: warning: array subscript is below array bounds [-Warray-bounds]
ilink.c:2243:6: warning: array subscript is below array bounds [-Warray-bounds]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall iliostuff.o ilcheck.o ilcominputcode.o ilcomrec.o ilgetvect.o ilinputcode.o iloldnuclear.o automodified.o comlike.o sexmodified.o ilcommoncode.o ilink.o -o .//ilink -lm
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c iostuff.c -o liiostuff.o
iostuff.c: In function 'read_till_blank_line':
iostuff.c:273:1: warning: no return statement in function returning non-void [-Wreturn-type]
iostuff.c: In function 'init_ped_loc_all':
iostuff.c:379:15: warning: variable 'templocus' set but not used [-Wunused-but-set-variable]
iostuff.c: At top level:
iostuff.c:257:12: warning: 'read_till_blank_line' defined but not used [-Wunused-function]
iostuff.c: In function 'foundped':
iostuff.c:319:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
iostuff.c: In function 'check_constants':
iostuff.c:195:72: warning: 'worst_ped' may be used uninitialized in this function [-Wuninitialized]
iostuff.c: In function 'adjust_alleles':
iostuff.c:517:31: warning: 'cond_present_freq_sum' may be used uninitialized in this function [-Wuninitialized]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c check.c -o licheck.o
check.c: In function 'recoveryErrorHelp':
check.c:117:11: warning: unused variable 'helpTextFile' [-Wunused-variable]
check.c: In function 'recoverCheckpoint':
check.c:584:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
check.c:592:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c:594:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c:595:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'getCkptNumber':
check.c:427:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'getCkptTuple':
check.c:194:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'recoveryErrorHelp':
check.c:175:8: warning: ignoring return value of 'gets', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'fileErrorHelp':
check.c:57:8: warning: ignoring return value of 'gets', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c cominputcode.c -o licominputcode.o
cominputcode.c: In function 'readped':
cominputcode.c:1544:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
cominputcode.c: In function 'gettheta':
cominputcode.c:1984:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1986:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1987:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1990:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getlocus':
cominputcode.c:1825:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1858:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1861:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1885:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1893:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1897:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1899:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1946:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getbin':
cominputcode.c:1656:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1673:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1678:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getpen':
cominputcode.c:1707:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1719:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1728:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1736:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1743:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getquan':
cominputcode.c:1761:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1773:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1778:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1786:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1792:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1796:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readped':
cominputcode.c:1510:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1531:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1542:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1575:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1578:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getind':
cominputcode.c:1436:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readnumber':
cominputcode.c:1192:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readbin':
cominputcode.c:1165:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readquan':
cominputcode.c:1278:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1288:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1300:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readaff':
cominputcode.c:1241:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1256:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'read_loop_file':
cominputcode.c:933:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:978:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1037:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readped':
cominputcode.c:1226:18: warning: 'allsecond' may be used uninitialized in this function [-Wuninitialized]
cominputcode.c:1186:17: note: 'allsecond' was declared here
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c comrec.c -o licomrec.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c ligetvect.c -o ligetvect.o
In file included from ligetvect.c:86:0:
comgetvect.c: In function 'prior':
comgetvect.c:71:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:74:6: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:117:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:120:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:125:4: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:129:3: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c liinputcode.c -o liinputcode.o
liinputcode.c: In function 'readloci':
liinputcode.c:25:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
liinputcode.c:53:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
liinputcode.c:70:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
liinputcode.c:83:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
liinputcode.c:105:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
liinputcode.c:106:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
liinputcode.c:120:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
liinputcode.c:127:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
liinputcode.c:145:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c lioldnuclear.c -o lioldnuclear.o
In file included from comnuclear.c:1316:0,
                 from lioldnuclear.c:35:
oldsegup.c: In function 'oldsegsexup':
oldsegup.c:11:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
oldsegup.c: In function 'oldsegup':
oldsegup.c:76:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
In file included from lioldnuclear.c:35:0:
comnuclear.c: In function 'msegsexdown':
comnuclear.c:1324:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable]
comnuclear.c: In function 'msegdown':
comnuclear.c:1420:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c commoncode.c -o licommoncode.o
commoncode.c: In function 'ckptEnsureFileContents':
commoncode.c:383:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
commoncode.c: In function 'ckptInit':
commoncode.c:289:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DLINKMAP -c linkmap.c -o linkmap.o
linkmap.c: In function 'iterpeds':
linkmap.c:310:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
linkmap.c:314:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
linkmap.c:351:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
linkmap.c:354:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
linkmap.c:358:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
linkmap.c:361:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
linkmap.c:365:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
linkmap.c:368:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall liiostuff.o licheck.o licominputcode.o licomrec.o ligetvect.o liinputcode.o lioldnuclear.o automodified.o comlike.o sexmodified.o licommoncode.o linkmap.o -o .//linkmap -lm
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c iostuff.c -o mliostuff.o
iostuff.c: In function 'read_till_blank_line':
iostuff.c:273:1: warning: no return statement in function returning non-void [-Wreturn-type]
iostuff.c: In function 'init_ped_loc_all':
iostuff.c:379:15: warning: variable 'templocus' set but not used [-Wunused-but-set-variable]
iostuff.c: At top level:
iostuff.c:257:12: warning: 'read_till_blank_line' defined but not used [-Wunused-function]
iostuff.c: In function 'foundped':
iostuff.c:319:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
iostuff.c: In function 'check_constants':
iostuff.c:195:72: warning: 'worst_ped' may be used uninitialized in this function [-Wuninitialized]
iostuff.c: In function 'adjust_alleles':
iostuff.c:517:31: warning: 'cond_present_freq_sum' may be used uninitialized in this function [-Wuninitialized]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c check.c -o mlcheck.o
check.c: In function 'recoveryErrorHelp':
check.c:117:11: warning: unused variable 'helpTextFile' [-Wunused-variable]
check.c: In function 'recoverCheckpoint':
check.c:584:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
check.c:592:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c:594:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c:595:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'getCkptNumber':
check.c:427:9: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'getCkptTuple':
check.c:194:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'recoveryErrorHelp':
check.c:175:8: warning: ignoring return value of 'gets', declared with attribute warn_unused_result [-Wunused-result]
check.c: In function 'fileErrorHelp':
check.c:57:8: warning: ignoring return value of 'gets', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c cominputcode.c -o mlcominputcode.o
cominputcode.c: In function 'readped':
cominputcode.c:1544:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
cominputcode.c: In function 'gettheta':
cominputcode.c:1984:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1986:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1987:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1990:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getlocus':
cominputcode.c:1825:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1858:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1861:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1885:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1893:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1897:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1899:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1946:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getbin':
cominputcode.c:1656:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1673:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1678:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getpen':
cominputcode.c:1707:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1719:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1728:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1736:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1743:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getquan':
cominputcode.c:1761:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1773:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1778:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1786:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1792:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1796:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readped':
cominputcode.c:1510:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1531:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1542:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1575:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1578:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'getind':
cominputcode.c:1436:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readnumber':
cominputcode.c:1192:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readbin':
cominputcode.c:1165:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readquan':
cominputcode.c:1278:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1288:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1300:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readaff':
cominputcode.c:1241:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1256:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'read_loop_file':
cominputcode.c:933:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:978:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c:1037:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
cominputcode.c: In function 'readped':
cominputcode.c:1226:18: warning: 'allsecond' may be used uninitialized in this function [-Wuninitialized]
cominputcode.c:1186:17: note: 'allsecond' was declared here
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c comrec.c -o mlcomrec.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c mlgetvect.c -o mlgetvect.o
In file included from mlgetvect.c:84:0:
comgetvect.c: In function 'prior':
comgetvect.c:71:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:74:6: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:117:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:120:3: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:125:4: warning: array subscript has type 'char' [-Wchar-subscripts]
comgetvect.c:129:3: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c mlinputcode.c -o mlinputcode.o
mlinputcode.c: In function 'readloci':
mlinputcode.c:23:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
mlinputcode.c:51:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
mlinputcode.c:68:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
mlinputcode.c:81:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
mlinputcode.c:103:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
mlinputcode.c:104:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
mlinputcode.c:118:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
mlinputcode.c:125:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
mlinputcode.c:143:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c mloldnuclear.c -o mloldnuclear.o
In file included from comnuclear.c:1316:0,
                 from mloldnuclear.c:34:
oldsegup.c: In function 'oldsegsexup':
oldsegup.c:11:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
oldsegup.c: In function 'oldsegup':
oldsegup.c:76:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable]
In file included from mloldnuclear.c:34:0:
comnuclear.c: In function 'msegsexdown':
comnuclear.c:1324:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable]
comnuclear.c: In function 'msegdown':
comnuclear.c:1420:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c commoncode.c -o mlcommoncode.o
commoncode.c: In function 'ckptEnsureFileContents':
commoncode.c:383:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
commoncode.c: In function 'ckptInit':
commoncode.c:289:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -DMLINK -c mlink.c -o mlink.o
mlink.c: In function 'iterpeds':
mlink.c:283:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
mlink.c:291:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
mlink.c: In function 'ipedLoop':
mlink.c:500:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall mliostuff.o mlcheck.o mlcominputcode.o mlcomrec.o mlgetvect.o mlinputcode.o mloldnuclear.o automodified.o comlike.o sexmodified.o mlcommoncode.o mlink.o -o .//mlink -lm
gcc   -O    unknown.c  -c -o unknown.o  
unknown.c: In function 'malloc_err':
unknown.c:149:5: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat]
unknown.c: In function 'prelim_iterpeds':
unknown.c:4359:5: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat]
unknown.c: In function 'initunknown':
unknown.c:4596:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'readloci':
unknown.c:2819:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2833:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2837:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'respond':
unknown.c:824:8: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'main_new_second':
unknown.c:5170:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:5176:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'readped':
unknown.c:2511:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2515:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2556:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'main_new_first':
unknown.c:5039:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:5047:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'main_old':
unknown.c:4694:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4699:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'testhets':
unknown.c:4455:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4457:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4465:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4468:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4472:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4474:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4476:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4479:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4482:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4484:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4489:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4491:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4493:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4497:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4502:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4509:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4512:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4516:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4522:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4524:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4527:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4533:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4536:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4539:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4548:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:4551:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'getlocus':
unknown.c:2741:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2771:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2772:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2775:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2779:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2783:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2805:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'getbin':
unknown.c:2687:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2701:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2706:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'getpen':
unknown.c:2636:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2648:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2657:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2665:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2671:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'getquan':
unknown.c:2615:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2622:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'getrest':
unknown.c:2443:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'getind':
unknown.c:2383:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'readquan':
unknown.c:2313:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2323:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2335:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'readaff':
unknown.c:2276:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:2291:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'readnumber':
unknown.c:2235:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'readbin':
unknown.c:2216:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'read_till_blank_line':
unknown.c:437:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
unknown.c: In function 'adjustIds':
unknown.c:258:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:385:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
unknown.c:409:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
gcc   -O    loopbrk.c -c -o loopbrk.o 
loopbrk.c: In function 'loopbreakers2':
loopbrk.c:2391:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:2397:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c: In function 'loopbreakers':
loopbrk.c:2329:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:2335:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c: In function 'detectLoopedPedigrees':
loopbrk.c:2267:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c: In function 'computeLineLength':
loopbrk.c:2083:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c: In function 'readped_with_loop':
loopbrk.c:1498:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:1503:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:1507:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:1530:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c: In function 'read_write_ped_non_loop':
loopbrk.c:1182:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:1185:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:1193:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c: In function 'Read_homoz_heteroz':
loopbrk.c:1130:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:1136:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c: In function 'open_files':
loopbrk.c:108:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
loopbrk.c:126:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
gcc   -O    loopbrk.o unknown.o -o .//unknown -lm
make[1]: Leaving directory `/build/buildd/fastlink-4.1P-fix95/4.1P/src'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
 /usr/bin/fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep 
dh_installdirs -A 
mkdir -p "."
DEB_MAKE_CHECK_TARGET unset, not running checks
DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
Adding cdbs dependencies to debian/fastlink.substvars
dh_installdirs -pfastlink 
dh_installdocs -pfastlink ./README 
dh_installexamples -pfastlink 
dh_installman -pfastlink  
dh_installinfo -pfastlink  
dh_installmenu -pfastlink 
dh_installcron -pfastlink 
dh_installinit -pfastlink  
dh_installdebconf -pfastlink 
dh_installemacsen -pfastlink   
dh_installcatalogs -pfastlink 
dh_installpam -pfastlink 
dh_installlogrotate -pfastlink 
dh_installlogcheck -pfastlink 
dh_installchangelogs -pfastlink  
dh_installudev -pfastlink 
dh_lintian -pfastlink 
dh_bugfiles -pfastlink 
dh_install -pfastlink  
dh_link -pfastlink  
dh_installmime -pfastlink 
dh_installgsettings -pfastlink 
dh_strip -pfastlink  
dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: fastlink 
dh_strip debug symbol extraction: packages to act on: fastlink 
dh_strip debug symbol extraction: ignored packages: 
dpkg-deb: building package `fastlink-dbgsym' in `../fastlink-dbgsym_4.1P-fix95-3_powerpc.ddeb'.
dh_compress -pfastlink  
dh_fixperms -pfastlink  
dh_makeshlibs -pfastlink  
dh_installdeb -pfastlink 
dh_perl -pfastlink 
dh_shlibdeps -pfastlink    
dh_gencontrol -pfastlink  
# only call dh_scour for packages in main
if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pfastlink ; fi
dh_md5sums -pfastlink 
dh_builddeb -pfastlink 
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing fastlink (in debian/fastlink); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/fastlink/DEBIAN/control, package fastlink, directory debian/fastlink
pkgstripfiles: Truncating usr/share/doc/fastlink/changelog.Debian.gz to topmost ten records
pkgstripfiles: PNG optimization for package fastlink took 0 s
dpkg-deb: warning: 'debian/fastlink/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `fastlink' in `../fastlink_4.1P-fix95-3_powerpc.deb'.
 dpkg-genchanges -B -mUbuntu/powerpc Build Daemon <buildd@ross.buildd> >../fastlink_4.1P-fix95-3_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build fastlink-4.1P-fix95
dpkg-buildpackage: binary only upload (no source included)
******************************************************************************
Build finished at 20120103-0822
Publishing debug debs.

chroot-autobuild/build/buildd/fastlink_4.1P-fix95-3_powerpc.deb:
 new debian package, version 2.0.
 size 421826 bytes: control archive= 2111 bytes.
    1456 bytes,    31 lines      control              
    2163 bytes,    32 lines      md5sums              
     185 bytes,     7 lines   *  postinst             #!/bin/sh
     160 bytes,     5 lines   *  postrm               #!/bin/sh
 Package: fastlink
 Version: 4.1P-fix95-3
 Architecture: powerpc
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 797
 Depends: libc6 (>= 2.7)
 Suggests: fastlink-doc
 Section: science
 Priority: optional
 Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
 Description: faster version of pedigree programs of Linkage
  Genetic linkage analysis is a statistical technique used to map
  genes and find the approximate location of disease genes. There
  was a standard software package for genetic linkage called
  LINKAGE. FASTLINK is a significantly modified and improved
  version of the main programs of LINKAGE that runs much faster
  sequentially, can run in parallel, allows the user to recover
  gracefully from a computer crash, and provides abundant new
  documentation. FASTLINK has been used in over 1000 published
  genetic linkage studies.
  .
  This package contains the following programs:
   ilink:    GEMINI optimization procedure to find a locally
             optimal value of the theta vector of recombination
             fractions
   linkmap:  calculates location scores of one locus against a
             fixed map of other loci
   lodscore: compares likelihoods at locally optimal theta
   mlink:    calculates lod scores and risk with two of more loci
   unknown:  identify possible genotypes for unknowns

chroot-autobuild/build/buildd/fastlink_4.1P-fix95-3_powerpc.deb:
drwxr-xr-x root/root         0 2012-01-03 08:22 ./
drwxr-xr-x root/root         0 2012-01-03 08:22 ./usr/
drwxr-xr-x root/root         0 2012-01-03 08:22 ./usr/share/
drwxr-xr-x root/root         0 2012-01-03 08:22 ./usr/share/doc/
drwxr-xr-x root/root         0 2012-01-03 08:22 ./usr/share/doc/fastlink/
-rw-r--r-- root/root      3007 1999-07-03 19:08 ./usr/share/doc/fastlink/README.TreadMarks.gz
-rw-r--r-- root/root       606 1999-08-19 13:48 ./usr/share/doc/fastlink/README.Linux
-rw-r--r-- root/root      1894 1999-07-03 19:08 ./usr/share/doc/fastlink/README.allele.gz
-rw-r--r-- root/root      6648 1999-07-03 19:08 ./usr/share/doc/fastlink/README.checkpoint.gz
-rw-r--r-- root/root      2569 2001-12-18 18:00 ./usr/share/doc/fastlink/README.bugreport
-rw-r--r-- root/root      2460 1999-07-03 19:08 ./usr/share/doc/fastlink/README.constants.gz
-rw-r--r-- root/root      1699 1999-07-03 19:08 ./usr/share/doc/fastlink/README.mapfun.gz
-rw-r--r-- root/root      6990 1999-07-03 19:08 ./usr/share/doc/fastlink/README.p4.gz
-rw-r--r-- root/root      2856 1999-07-03 19:08 ./usr/share/doc/fastlink/README.memory
-rw-r--r-- root/root      9847 1999-07-03 19:08 ./usr/share/doc/fastlink/README.trouble.gz
-rw-r--r-- root/root      3140 1999-07-03 19:08 ./usr/share/doc/fastlink/README.scaling
-rw-r--r-- root/root      2244 1999-07-03 19:08 ./usr/share/doc/fastlink/README.time
-rw-r--r-- root/root      2895 1999-07-03 19:08 ./usr/share/doc/fastlink/README.unknown
-rw-r--r-- root/root     17206 2008-11-17 06:38 ./usr/share/doc/fastlink/fastlink.html
-rw-r--r-- root/root       687 2008-11-17 06:38 ./usr/share/doc/fastlink/README.Debian
-rw-r--r-- root/root      1404 2011-01-14 07:40 ./usr/share/doc/fastlink/copyright
-rw-r--r-- root/root      3857 1999-09-17 00:39 ./usr/share/doc/fastlink/README.gz
-rw-r--r-- root/root      2472 1999-07-03 19:08 ./usr/share/doc/fastlink/README.ILINK.gz
-rw-r--r-- root/root      3075 1999-07-03 19:08 ./usr/share/doc/fastlink/README.parallel.gz
-rw-r--r-- root/root     13988 2008-02-28 14:29 ./usr/share/doc/fastlink/README.updates.gz
-rw-r--r-- root/root      2326 2012-01-03 08:22 ./usr/share/doc/fastlink/changelog.Debian.gz
drwxr-xr-x root/root         0 2012-01-03 08:22 ./usr/share/man/
drwxr-xr-x root/root         0 2012-01-03 08:22 ./usr/share/man/man1/
-rw-r--r-- root/root       792 2012-01-03 08:22 ./usr/share/man/man1/lodscore.1.gz
-rw-r--r-- root/root       612 2012-01-03 08:22 ./usr/share/man/man1/mlink.1.gz
-rw-r--r-- root/root      1004 2012-01-03 08:22 ./usr/share/man/man1/unknown.1.gz
-rw-r--r-- root/root      1272 2012-01-03 08:22 ./usr/share/man/man1/ilink.1.gz
-rw-r--r-- root/root       621 2012-01-03 08:22 ./usr/share/man/man1/linkmap.1.gz
drwxr-xr-x root/root         0 2012-01-03 08:22 ./usr/share/menu/
-rw-r--r-- root/root      1056 2011-12-19 09:32 ./usr/share/menu/fastlink
drwxr-xr-x root/root         0 2012-01-03 08:22 ./usr/bin/
-rwxr-xr-x root/root    149144 2012-01-03 08:22 ./usr/bin/lodscore
-rwxr-xr-x root/root    161432 2012-01-03 08:22 ./usr/bin/ilink
-rwxr-xr-x root/root    140956 2012-01-03 08:22 ./usr/bin/linkmap
-rwxr-xr-x root/root    136856 2012-01-03 08:22 ./usr/bin/mlink
-rwxr-xr-x root/root     87744 2012-01-03 08:22 ./usr/bin/unknown

fastlink_4.1P-fix95-3_powerpc.changes:
Format: 1.8
Date: Mon, 19 Dec 2011 10:34:20 +0100
Source: fastlink
Binary: fastlink fastlink-doc
Architecture: powerpc
Version: 4.1P-fix95-3
Distribution: precise
Urgency: low
Maintainer: Ubuntu/powerpc Build Daemon <buildd@ross.buildd>
Changed-By: Andreas Tille <tille@debian.org>
Description: 
 fastlink   - faster version of pedigree programs of Linkage
 fastlink-doc - Some papers about fastlink
Closes: 639998
Changes: 
 fastlink (4.1P-fix95-3) unstable; urgency=low
 .
   * Replaced debian/*.desktop by debian/menu to make sure users of
     modern desktop systems using freedesktop.org standards will not
     be confused by a missing graphical interface
     Closes: #639998
   * debian/control:
     - Standards-Version: 3.9.2 (no changes needed)
     - Fixed Vcs fields
     - Dropped article in short description
   * Debhelper 8 (control+compat)
Checksums-Sha1: 
 e4bfa7da8723845679fb60aa0d1c601506ca794b 421826 fastlink_4.1P-fix95-3_powerpc.deb
Checksums-Sha256: 
 68ef92d090c0630be8265eb8ec3d74c71107b5891ffa38e4f51096e4a88be8ec 421826 fastlink_4.1P-fix95-3_powerpc.deb
Files: 
 2aca19a52653dfa8c2db6e2878268bbd 421826 science optional fastlink_4.1P-fix95-3_powerpc.deb

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Build needed 00:01:16, 9784k disk space
Can't open average time db /var/debbuild/avg-build-times
Can't open average space db /var/debbuild/avg-build-space
RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '99d89ab89035c02e05c4222bbc639029306538cb']
Scanning for processes to kill in build /home/buildd/build-99d89ab89035c02e05c4222bbc639029306538cb/chroot-autobuild...
RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '99d89ab89035c02e05c4222bbc639029306538cb']
Unmounting chroot for build 99d89ab89035c02e05c4222bbc639029306538cb...
none /home/buildd/build-99d89ab89035c02e05c4222bbc639029306538cb/chroot-autobuild/proc proc rw,relatime 0 0
none /home/buildd/build-99d89ab89035c02e05c4222bbc639029306538cb/chroot-autobuild/dev/pts devpts rw,relatime,mode=600,ptmxmode=000 0 0
none /home/buildd/build-99d89ab89035c02e05c4222bbc639029306538cb/chroot-autobuild/sys sysfs rw,relatime 0 0
none /home/buildd/build-99d89ab89035c02e05c4222bbc639029306538cb/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0
RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '99d89ab89035c02e05c4222bbc639029306538cb']
Removing build 99d89ab89035c02e05c4222bbc639029306538cb