RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux z13-016 4.3.0-0-generic #9 SMP Tue Dec 1 18:12:15 CET 2015 s390x Buildd toolchain package versions: launchpad-buildd_136 python-lpbuildd_136 sbuild_0.66.0-5ubuntu1 dpkg-dev_1.18.3ubuntu1 python-debian_0.1.27ubuntu1. Syncing the system clock with the buildd NTP service... 4 Dec 19:28:22 ntpdate[65453]: adjust time server 10.211.37.1 offset -0.000085 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8373679', '/home/buildd/filecache-default/a064a0e569947625a7404b763659cb5b35808b40'] Unpacking chroot for build PACKAGEBUILD-8373679 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8373679'] Mounting chroot for build PACKAGEBUILD-8373679 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8373679', 'deb http://ftpmaster.internal/ubuntu xenial main universe'] Overriding sources.list in build-PACKAGEBUILD-8373679 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8373679', 's390x'] Updating debian chroot for build PACKAGEBUILD-8373679 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Ign http://archive-team.internal xenial InRelease Ign http://archive-team.internal xenial Release.gpg Hit http://archive-team.internal xenial Release Ign http://archive-team.internal xenial/main s390x Packages/DiffIndex Hit http://archive-team.internal xenial/main Translation-en Hit http://archive-team.internal xenial/main s390x Packages Get:2 http://ftpmaster.internal xenial/main s390x Packages [1279 kB] Get:3 http://ftpmaster.internal xenial/universe s390x Packages [4498 kB] Get:4 http://ftpmaster.internal xenial/main Translation-en [848 kB] Get:5 http://ftpmaster.internal xenial/universe Translation-en [4728 kB] Fetched 11.6 MB in 6s (1881 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: libc6 linux-libc-dev 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5251 kB of archives. After this operation, 1024 B disk space will be freed. WARNING: The following packages cannot be authenticated! libc6 Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main linux-libc-dev s390x 4.3.0-1.10 [805 kB] Get:2 http://archive-team.internal/bootstrap/s390x-stage2/ xenial/main libc6 s390x 2.21-0ubuntu4 [4446 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5251 kB in 1s (3218 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../libc6_2.21-0ubuntu4_s390x.deb ... Unpacking libc6:s390x (2.21-0ubuntu4) over (2.21-0ubuntu4) ... Setting up libc6:s390x (2.21-0ubuntu4) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_4.3.0-1.10_s390x.deb ... Unpacking linux-libc-dev:s390x (4.3.0-1.10) over (4.3.0-0.9) ... Setting up linux-libc-dev:s390x (4.3.0-1.10) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8373679', 's390x', 'xenial', '-c', 'chroot:autobuild', '--arch=s390x', '--dist=xenial', '--purge=never', '--nolog', 'fastlink_4.1P-fix95-3.dsc'] Initiating build PACKAGEBUILD-8373679 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.3.0-0-generic #9 SMP Tue Dec 1 18:12:15 CET 2015 s390x sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on z13-016.buildd +==============================================================================+ | fastlink 4.1P-fix95-3 (s390x) 04 Dec 2015 19:28 | +==============================================================================+ Package: fastlink Version: 4.1P-fix95-3 Source Version: 4.1P-fix95-3 Distribution: xenial Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/fastlink-IQyTQw/fastlink-4.1P-fix95' with '<>' I: NOTICE: Log filtering will replace 'build/fastlink-IQyTQw' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8373679/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fastlink_4.1P-fix95-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-KLZe9k/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: cdbs, debhelper (>= 8) Filtered Build-Depends: cdbs, debhelper (>= 8) dpkg-deb: building package 'sbuild-build-depends-fastlink-dummy' in '/<>/resolver-c17_fv/apt_archive/sbuild-build-depends-fastlink-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install fastlink build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-strip-nondeterminism dh-translations file gettext gettext-base groff-base intltool intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu55 libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libtimedate-perl libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core ifupdown libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-strip-nondeterminism dh-translations file gettext gettext-base groff-base intltool intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu55 libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libtimedate-perl libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal sbuild-build-depends-fastlink-dummy 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 20.3 MB/20.3 MB of archives. After this operation, 84.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libasprintf0v5 groff-base libpython2.7-minimal python-minimal libpython2.7-stdlib python2.7 libpython-stdlib python file libfile-stripnondeterminism-perl dh-strip-nondeterminism libhtml-parser-perl libnet-ssleay-perl libxml-parser-perl sbuild-build-depends-fastlink-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main libasprintf0v5 s390x 0.19.4-1ubuntu3 [6638 B] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main groff-base s390x 1.22.3-4 [1199 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main bsdmainutils s390x 9.0.6ubuntu1 [178 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main libpipeline1 s390x 1.4.1-1 [24.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main man-db s390x 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-minimal s390x 2.7.10-4ubuntu2 [337 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main python2.7-minimal s390x 2.7.10-4ubuntu2 [1048 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main python-minimal s390x 2.7.9-1 [28.2 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main mime-support all 3.59ubuntu1 [31.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libexpat1 s390x 2.1.0-7 [65.4 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-stdlib s390x 2.7.10-4ubuntu2 [1761 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main python2.7 s390x 2.7.10-4ubuntu2 [210 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libpython-stdlib s390x 2.7.9-1 [7720 B] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main python s390x 2.7.9-1 [137 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libmagic1 s390x 1:5.25-2ubuntu1 [214 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main file s390x 1:5.25-2ubuntu1 [21.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main netbase all 5.3 [12.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main gettext-base s390x 0.19.4-1ubuntu3 [48.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libglib2.0-0 s390x 2.47.3-3 [1041 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libicu55 s390x 55.1-6ubuntu1 [7478 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main libxml2 s390x 2.9.2+zdfsg1-4ubuntu1 [640 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libsigsegv2 s390x 2.10-4 [13.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main m4 s390x 1.4.17-4 [192 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main autoconf all 2.69-9 [321 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main autotools-dev all 20150820.1 [39.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main automake all 1:1.15-1ubuntu1 [511 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libcroco3 s390x 0.6.9-1 [77.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libunistring0 s390x 0.9.3-5.2ubuntu1 [262 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main gettext s390x 0.19.4-1ubuntu3 [838 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main po-debconf all 1.0.18 [234 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main libarchive-zip-perl all 1.53-1 [87.0 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main libtimedate-perl all 2.3000-2 [37.5 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main dh-strip-nondeterminism all 0.014-1 [5596 B] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main debhelper all 9.20151126ubuntu1 [741 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main liburi-perl all 1.69-1 [84.5 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libencode-locale-perl all 1.05-1 [12.3 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libfile-listing-perl all 6.04-1 [9774 B] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-parser-perl s390x 3.71-2 [89.8 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-tree-perl all 5.03-2 [197 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main libio-html-perl all 1.001-1 [14.9 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-message-perl all 6.11-1 [74.3 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libnet-ssleay-perl s390x 1.72-1 [253 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main libio-socket-ssl-perl all 2.021-1 [161 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libnet-http-perl all 6.09-1 [24.0 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main liblwp-protocol-https-perl all 6.06-2 [8682 B] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libwww-perl all 6.13-1 [146 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libxml-parser-perl s390x 2.44-1 [204 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main intltool all 0.51.0-1 [44.7 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main dh-translations all 123 [21.9 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main python-scour all 0.26-3ubuntu1 [40.4 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main cdbs all 0.4.130ubuntu2 [42.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.3 MB in 11s (1778 kB/s) Selecting previously unselected package libasprintf0v5:s390x. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_s390x.deb ... Unpacking libasprintf0v5:s390x (0.19.4-1ubuntu3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-4_s390x.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_s390x.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../libpipeline1_1.4.1-1_s390x.deb ... Unpacking libpipeline1:s390x (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_s390x.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libpython2.7-minimal:s390x. Preparing to unpack .../libpython2.7-minimal_2.7.10-4ubuntu2_s390x.deb ... Unpacking libpython2.7-minimal:s390x (2.7.10-4ubuntu2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.10-4ubuntu2_s390x.deb ... Unpacking python2.7-minimal (2.7.10-4ubuntu2) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.9-1_s390x.deb ... Unpacking python-minimal (2.7.9-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... Unpacking mime-support (3.59ubuntu1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.1.0-7_s390x.deb ... Unpacking libexpat1:s390x (2.1.0-7) ... Selecting previously unselected package libpython2.7-stdlib:s390x. Preparing to unpack .../libpython2.7-stdlib_2.7.10-4ubuntu2_s390x.deb ... Unpacking libpython2.7-stdlib:s390x (2.7.10-4ubuntu2) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.10-4ubuntu2_s390x.deb ... Unpacking python2.7 (2.7.10-4ubuntu2) ... Selecting previously unselected package libpython-stdlib:s390x. Preparing to unpack .../libpython-stdlib_2.7.9-1_s390x.deb ... Unpacking libpython-stdlib:s390x (2.7.9-1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Setting up libpython2.7-minimal:s390x (2.7.10-4ubuntu2) ... Setting up python2.7-minimal (2.7.10-4ubuntu2) ... Setting up python-minimal (2.7.9-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12680 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_s390x.deb ... Unpacking python (2.7.9-1) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_s390x.deb ... Unpacking libmagic1:s390x (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_s390x.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package netbase. Preparing to unpack .../archives/netbase_5.3_all.deb ... Unpacking netbase (5.3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.4-1ubuntu3_s390x.deb ... Unpacking gettext-base (0.19.4-1ubuntu3) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../libglib2.0-0_2.47.3-3_s390x.deb ... Unpacking libglib2.0-0:s390x (2.47.3-3) ... Selecting previously unselected package libicu55:s390x. Preparing to unpack .../libicu55_55.1-6ubuntu1_s390x.deb ... Unpacking libicu55:s390x (55.1-6ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.2+zdfsg1-4ubuntu1) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../libsigsegv2_2.10-4_s390x.deb ... Unpacking libsigsegv2:s390x (2.10-4) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-4_s390x.deb ... Unpacking m4 (1.4.17-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-9_all.deb ... Unpacking autoconf (2.69-9) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20150820.1_all.deb ... Unpacking autotools-dev (20150820.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.15-1ubuntu1_all.deb ... Unpacking automake (1:1.15-1ubuntu1) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../libcroco3_0.6.9-1_s390x.deb ... Unpacking libcroco3:s390x (0.6.9-1) ... Selecting previously unselected package libunistring0:s390x. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_s390x.deb ... Unpacking libunistring0:s390x (0.9.3-5.2ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.4-1ubuntu3_s390x.deb ... Unpacking gettext (0.19.4-1ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.53-1_all.deb ... Unpacking libarchive-zip-perl (1.53-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.014-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.014-1_all.deb ... Unpacking dh-strip-nondeterminism (0.014-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20151126ubuntu1_all.deb ... Unpacking debhelper (9.20151126ubuntu1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../liburi-perl_1.69-1_all.deb ... Unpacking liburi-perl (1.69-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../libencode-locale-perl_1.05-1_all.deb ... Unpacking libencode-locale-perl (1.05-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../libhttp-date-perl_6.02-1_all.deb ... Unpacking libhttp-date-perl (6.02-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... 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Unpacking liblwp-protocol-https-perl (6.06-2) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../libwww-perl_6.13-1_all.deb ... Unpacking libwww-perl (6.13-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../libxml-parser-perl_2.44-1_s390x.deb ... Unpacking libxml-parser-perl (2.44-1) ... Selecting previously unselected package intltool. Preparing to unpack .../intltool_0.51.0-1_all.deb ... Unpacking intltool (0.51.0-1) ... Selecting previously unselected package dh-translations. Preparing to unpack .../dh-translations_123_all.deb ... Unpacking dh-translations (123) ... Selecting previously unselected package python-scour. Preparing to unpack .../python-scour_0.26-3ubuntu1_all.deb ... Unpacking python-scour (0.26-3ubuntu1) ... Selecting previously unselected package cdbs. Preparing to unpack .../cdbs_0.4.130ubuntu2_all.deb ... Unpacking cdbs (0.4.130ubuntu2) ... Selecting previously unselected package sbuild-build-depends-fastlink-dummy. Preparing to unpack .../sbuild-build-depends-fastlink-dummy.deb ... Unpacking sbuild-build-depends-fastlink-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Setting up libasprintf0v5:s390x (0.19.4-1ubuntu3) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:s390x (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up mime-support (3.59ubuntu1) ... Setting up libexpat1:s390x (2.1.0-7) ... Setting up libpython2.7-stdlib:s390x (2.7.10-4ubuntu2) ... Setting up python2.7 (2.7.10-4ubuntu2) ... Setting up libpython-stdlib:s390x (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libmagic1:s390x (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up netbase (5.3) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up libglib2.0-0:s390x (2.47.3-3) ... No schema files found: doing nothing. Setting up libicu55:s390x (55.1-6ubuntu1) ... Setting up libxml2:s390x (2.9.2+zdfsg1-4ubuntu1) ... Setting up libsigsegv2:s390x (2.10-4) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libcroco3:s390x (0.6.9-1) ... Setting up libunistring0:s390x (0.9.3-5.2ubuntu1) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liburi-perl (1.69-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-2) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.72-1) ... Setting up libio-socket-ssl-perl (2.021-1) ... Setting up libnet-http-perl (6.09-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-3ubuntu1) ... Setting up dh-strip-nondeterminism (0.014-1) ... Setting up debhelper (9.20151126ubuntu1) ... Setting up libwww-perl (6.13-1) ... Setting up libxml-parser-perl (2.44-1) ... Setting up intltool (0.51.0-1) ... Setting up dh-translations (123) ... Setting up cdbs (0.4.130ubuntu2) ... Setting up sbuild-build-depends-fastlink-dummy (0.invalid.0) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.3.0-0-generic s390x (s390x) Toolchain package versions: binutils_2.25.90.20151125-2ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-27ubuntu1 gcc-5_5.2.1-27ubuntu1 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 linux-libc-dev_4.3.0-1.10 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 autoconf_2.69-9 automake_1:1.15-1ubuntu1 autotools-dev_20150820.1 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151125-2ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 cdbs_0.4.130ubuntu2 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.2.1-27ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151126ubuntu1 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 dh-translations_123 diffutils_1:3.3-2 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-16ubuntu2 g++-5_5.2.1-27ubuntu1 gcc_4:5.2.1-16ubuntu2 gcc-5_5.2.1-27ubuntu1 gcc-5-base_5.2.1-27ubuntu1 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.21-2 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool_0.51.0-1 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu8 libapt-pkg4.16_1.0.10.2ubuntu1 libarchive-zip-perl_1.53-1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-27ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-27ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.9-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.3ubuntu1 libencode-locale-perl_1.05-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-3 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.2.1-27ubuntu1 libgcc1_1:5.2.1-27ubuntu1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.2.1-27ubuntu1 libgpg-error0_1.20-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhtml-parser-perl_3.71-2 libhtml-tagset-perl_3.20-2 libhtml-tree-perl_5.03-2 libhttp-cookies-perl_6.01-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.11-1 libhttp-negotiate-perl_6.00-2 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.021-1 libisl15_0.15-3 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.06-2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnet-http-perl_6.09-1 libnet-ssleay-perl_1.72-1 libnettle6_3.1.1-4 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7.1ubuntu1 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_1:3.3.9-1ubuntu8 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-4ubuntu2 libpython2.7-stdlib_2.7.10-4ubuntu2 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.3-2build1 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2d-0ubuntu2 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 libsystemd0_228-2ubuntu1 libtasn1-6_4.7-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libudev1_228-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 liburi-perl_1.69-1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libwww-perl_6.13-1 libwww-robotrules-perl_6.01-1 libxml-parser-perl_2.44-1 libxml2_2.9.2+zdfsg1-4ubuntu1 linux-libc-dev_4.3.0-1.10 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 m4_1.4.17-4 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 netbase_5.3 openssl_1.0.2d-0ubuntu2 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_123 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 python_2.7.9-1 python-minimal_2.7.9-1 python-scour_0.26-3ubuntu1 python2.7_2.7.10-4ubuntu2 python2.7-minimal_2.7.10-4ubuntu2 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastlink-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu1 systemd-sysv_228-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu1 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Dec 19 09:49:19 2011 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./fastlink_4.1P-fix95-3.dsc dpkg-source: info: extracting fastlink in fastlink-4.1P-fix95 dpkg-source: info: unpacking fastlink_4.1P-fix95.orig.tar.gz dpkg-source: info: unpacking fastlink_4.1P-fix95-3.debian.tar.gz Check disc space ---------------- Sufficient free space for build User Environment ---------------- DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: source package fastlink dpkg-buildpackage: source version 4.1P-fix95-3 dpkg-buildpackage: source distribution unstable dpkg-source --before-build fastlink-4.1P-fix95 dpkg-buildpackage: host architecture s390x dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file fakeroot debian/rules clean test -x debian/rules rm -f debian/stamp-makefile-build debian/stamp-makefile-install cd 4.1P/src; make -C . CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" -k clean make[1]: Entering directory '/<>/4.1P/src' rm -f *.o make[1]: Leaving directory '/<>/4.1P/src' dh_clean cd 4.1P/src; make allclean make[1]: Entering directory '/<>/4.1P/src' rm -f *.o rm -f \ parilcominputcode.o parilcomlike.o parilcommoncode.o parilcompar.o parilcomrec.o parilgetvect.o parilink.o parilinputcode.o pariliostuff.o parilmodified.o pariloldnuclear.o parmlcheck.o parmlcominputcode.o parmlcomlike.o parmlcommoncode.o parmlcomoutput.o parmlcompar.o parmlcomrec.o parmlgetvect.o parmlink.o parmlinputcode.o parmliostuff.o parmlmodified.o parmloldnuclear.o parmloutbuff.o parmlstrbuff.o parlicheck.o parlicominputcode.o parlicomlike.o parlicommoncode.o parlicomoutput.o parlicompar.o parlicomrec.o parligetvect.o parliinputcode.o parliiostuff.o parlimodified.o parlinkmap.o parlioldnuclear.o parlioutbuff.o parlistrbuff.o \ .//*.atm .//*.udp .//*.p4 rm -f .//lodscore .//ilink .//linkmap .//mlink .//slowlodscore .//slowilink .//slowlinkmap .//slowmlink .//ofm .//unknown make[1]: Leaving directory '/<>/4.1P/src' debian/rules build-arch test -x debian/rules mkdir -p "." cd 4.1P/src; make -C . CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" make[1]: Entering directory '/<>/4.1P/src' gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLODSCORE -c iostuff.c -o loiostuff.o iostuff.c: In function 'check_constants': iostuff.c:100:13: warning: unused variable 'l' [-Wunused-variable] int prod, l; ^ iostuff.c: In function 'read_till_blank_line': iostuff.c:273:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ iostuff.c: In function 'init_ped_loc_all': iostuff.c:379:15: warning: variable 'templocus' set but not used [-Wunused-but-set-variable] locusvalues **templocus; ^ iostuff.c: At top level: iostuff.c:257:12: warning: 'read_till_blank_line' defined but not used [-Wunused-function] static int read_till_blank_line(infile) ^ iostuff.c: In function 'foundped': iostuff.c:319:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(inputline,DEFAULT_STRING_LENGTH,ipedfile); /* get a line */ ^ iostuff.c: In function 'check_constants': iostuff.c:162:72: warning: 'worst_ped' may be used uninitialized in this function [-Wmaybe-uninitialized] printf("\n%d alleles are needed at locus %d",ped_new_allele_count[worst_ped][locus2], locus2 + 1); ^ iostuff.c: In function 'adjust_alleles': iostuff.c:517:31: warning: 'cond_present_freq_sum' may be used uninitialized in this function [-Wmaybe-uninitialized] cond_present_freq_sum += ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLODSCORE -c check.c -o locheck.o check.c: In function 'fileErrorHelp': check.c:57:3: warning: implicit declaration of function 'gets' [-Wimplicit-function-declaration] gets ( theLine ) ; ^ check.c: In function 'recoveryErrorHelp': check.c:117:11: warning: unused variable 'helpTextFile' [-Wunused-variable] FILE * helpTextFile ; ^ check.c: In function 'getCkptTuple': check.c:194:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d %d %d %d" , ^ check.c: In function 'getCkptNumber': check.c:427:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread ( numberPtr , numberSize , 1 , checkpointDatafile ) ; ^ check.c: In function 'recoverCheckpoint': check.c:584:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets ( dateTimeStamp , DateTimeStampStringLength , checkpointDatafile ) ; ^ check.c:592:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d" , extra ) ; ^ check.c:594:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d" , & dummy ) ; ^ check.c:595:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%s" , theLine ) ; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLODSCORE -c comrec.c -o locomrec.o gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLODSCORE -c logetvect.c -o logetvect.o In file included from logetvect.c:85:0: comgetvect.c: In function 'prior': comgetvect.c:65:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency; ^ comgetvect.c:68:6: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency_cond; ^ comgetvect.c:100:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency; ^ comgetvect.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap2[i]].new_frequency; ^ comgetvect.c:108:4: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency_cond; ^ comgetvect.c:112:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap2[i]].new_frequency_cond; ^ comgetvect.c: In function 'quanval_': comgetvect.c:881:15: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] thisperson *WITH; ^ comgetvect.c: In function 'aff_': comgetvect.c:960:15: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] thisperson *WITH; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLODSCORE -c loinputcode.c -o loinputcode.o loinputcode.c: In function 'readped': loinputcode.c:1185:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &newped); ^ loinputcode.c:1206:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &sex_); ^ loinputcode.c:1217:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &profield); ^ loinputcode.c:1235:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%*[^\n]"); ^ loinputcode.c:1238:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &newped); ^ loinputcode.c: In function 'getind': loinputcode.c:1123:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", id); ^ loinputcode.c: In function 'readnumber': loinputcode.c:947:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &j); ^ loinputcode.c: In function 'readbin': loinputcode.c:920:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &j); ^ loinputcode.c: In function 'readquan': loinputcode.c:1032:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%lf", &(*phen)->x[i]); ^ loinputcode.c:1041:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%lf", &xval); ^ loinputcode.c:1053:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%lf", &xval); ^ loinputcode.c: In function 'readaff': loinputcode.c:996:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &thisval); ^ loinputcode.c:1011:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &(*phen)->liability); ^ loinputcode.c: In function 'getlocus': loinputcode.c:1472:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%d", &LINK->whichtype, ^ loinputcode.c:1500:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c:1503:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &LINK->whichtype); ^ loinputcode.c:1527:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &holdlocus[V.system - 1]->freq[j]); ^ loinputcode.c:1531:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c:1577:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%*[^\n]", &TEMP); ^ loinputcode.c: In function 'getbin': loinputcode.c:1296:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &LINK->LINK->LINK->nfactor[*system - 1]); ^ loinputcode.c:1313:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &k); ^ loinputcode.c:1318:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c: In function 'getpen': loinputcode.c:1347:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &(*locus)->UU.U0.nclass); ^ loinputcode.c:1359:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U0.pen[i][j][2][l]); ^ loinputcode.c:1368:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c:1382:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U0.pen[0][i][2][l]); ^ loinputcode.c:1389:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c: In function 'getquan': loinputcode.c:1408:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &(*locus)->UU.U1.ntrait); ^ loinputcode.c:1420:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U1.pm[j][k - 1][i]); ^ loinputcode.c:1425:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c:1433:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U1.vmat[i][j]); ^ loinputcode.c:1439:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c:1443:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", &(*locus)->UU.U1.conmat); ^ loinputcode.c: In function 'gettheta': loinputcode.c:1594:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", sex_); ^ loinputcode.c:1597:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", &distratio); ^ loinputcode.c: In function 'readloci': loinputcode.c:1615:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%d%ld%*[^\n]", &mlocus, &risksys, &autosomal); ^ loinputcode.c:1633:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%lf%lf%ld%*[^\n]", &mutsys, &mutmale, &mutfemale, ^ loinputcode.c:1643:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c:1648:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &difference); ^ loinputcode.c:1655:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &independent); ^ loinputcode.c:1700:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%*[^\n]", &hitsys); ^ loinputcode.c:1708:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d", &itp[V.i - 1]); ^ loinputcode.c:1710:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c:1716:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d", &locuslist1[V.i - 1]); ^ loinputcode.c:1722:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ loinputcode.c:1728:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d", &locuslist2[V.i - 1]); ^ loinputcode.c: In function 'readped': loinputcode.c:979:18: warning: 'allsecond' may be used uninitialized in this function [-Wmaybe-uninitialized] WITH->allele2 = allsecond; ^ loinputcode.c:941:17: note: 'allsecond' was declared here int allfirst, allsecond; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLODSCORE -c looldnuclear.c -o looldnuclear.o In file included from comnuclear.c:1316:0, from looldnuclear.c:36: oldsegup.c: In function 'oldsegsexup': oldsegup.c:11:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] censorrec *WITH; ^ oldsegup.c: In function 'oldsegup': oldsegup.c:76:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] censorrec *WITH; ^ In file included from looldnuclear.c:36:0: comnuclear.c: In function 'msegsexdown': comnuclear.c:1324:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable] censorrec *WITH1; ^ comnuclear.c: In function 'msegdown': comnuclear.c:1420:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable] censorrec *WITH1; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -c automodified.c -o automodified.o automodified.c: In function 'segsum3': automodified.c:186:20: warning: variable 'TEMPGENE2' set but not used [-Wunused-but-set-variable] int *TEMPGENE1, *TEMPGENE2; /*temporary pointers into genenumber table*/ ^ automodified.c:186:8: warning: variable 'TEMPGENE1' set but not used [-Wunused-but-set-variable] int *TEMPGENE1, *TEMPGENE2; /*temporary pointers into genenumber table*/ ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLODSCORE -c comlike.c -o locomlike.o comlike.c: In function 'recompute_haps': comlike.c:363:7: warning: unused variable 'locidx' [-Wunused-variable] int locidx; ^ comlike.c:362:16: warning: variable 'tempfgeno' set but not used [-Wunused-but-set-variable] int temphap, tempfgeno, tempall; ^ comlike.c: In function 'computenumhaps': comlike.c:456:15: warning: unused variable 'locus2' [-Wunused-variable] int locus1, locus2; ^ comlike.c:456:7: warning: unused variable 'locus1' [-Wunused-variable] int locus1, locus2; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -c sexmodified.c -o sexmodified.o gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLODSCORE -c lodscore.c -o lodscore.o lodscore.c: In function 'inib': lodscore.c:1379:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(in1, "%lf", &bmat[i - 1][j]); ^ lodscore.c: In function 'main': lodscore.c:2095:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( scriptCheckpoint , "%d %d" , & scriptRun , & scriptToSleep ) ; ^ lodscore.c:2205:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets ( dateTimeStamp , DateTimeStampStringLength , checkpointDatafile ) ; ^ lodscore.c:1716:10: warning: 'jk' may be used uninitialized in this function [-Wmaybe-uninitialized] if (jk == 2) ^ lodscore.c:1694:24: note: 'jk' was declared here int i, j, k, ik, ii, jk; ^ lodscore.c:1720:26: warning: 'ii' may be used uninitialized in this function [-Wmaybe-uninitialized] x[ik - 1] = bnd[ii - 1][jk - 1] + eh; ^ lodscore.c:1694:20: note: 'ii' was declared here int i, j, k, ik, ii, jk; ^ lodscore.c:1723:30: warning: 'ik' may be used uninitialized in this function [-Wmaybe-uninitialized] for(k = ik; k < nall; k++) ^ lodscore.c:1694:16: note: 'ik' was declared here int i, j, k, ik, ii, jk; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall loiostuff.o locheck.o locomrec.o logetvect.o loinputcode.o looldnuclear.o automodified.o locomlike.o sexmodified.o lodscore.o -o .//lodscore -lm locheck.o: In function `fileErrorHelp': /<>/4.1P/src/check.c:57: warning: the `gets' function is dangerous and should not be used. gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c iostuff.c -o iliostuff.o iostuff.c: In function 'read_till_blank_line': iostuff.c:273:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ iostuff.c: In function 'init_ped_loc_all': iostuff.c:379:15: warning: variable 'templocus' set but not used [-Wunused-but-set-variable] locusvalues **templocus; ^ iostuff.c: At top level: iostuff.c:257:12: warning: 'read_till_blank_line' defined but not used [-Wunused-function] static int read_till_blank_line(infile) ^ iostuff.c: In function 'foundped': iostuff.c:319:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(inputline,DEFAULT_STRING_LENGTH,ipedfile); /* get a line */ ^ iostuff.c: In function 'check_constants': iostuff.c:195:72: warning: 'worst_ped' may be used uninitialized in this function [-Wmaybe-uninitialized] printf("\n%d alleles are needed at locus %d",ped_new_allele_count[worst_ped][l], l + 1); ^ iostuff.c: In function 'adjust_alleles': iostuff.c:517:31: warning: 'cond_present_freq_sum' may be used uninitialized in this function [-Wmaybe-uninitialized] cond_present_freq_sum += ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c check.c -o ilcheck.o check.c: In function 'fileErrorHelp': check.c:57:3: warning: implicit declaration of function 'gets' [-Wimplicit-function-declaration] gets ( theLine ) ; ^ check.c: In function 'recoveryErrorHelp': check.c:117:11: warning: unused variable 'helpTextFile' [-Wunused-variable] FILE * helpTextFile ; ^ check.c: In function 'getCkptTuple': check.c:194:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d %d %d %d" , ^ check.c: In function 'getCkptNumber': check.c:427:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread ( numberPtr , numberSize , 1 , checkpointDatafile ) ; ^ check.c: In function 'recoverCheckpoint': check.c:584:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets ( dateTimeStamp , DateTimeStampStringLength , checkpointDatafile ) ; ^ check.c:592:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d" , extra ) ; ^ check.c:594:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d" , & dummy ) ; ^ check.c:595:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%s" , theLine ) ; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c cominputcode.c -o ilcominputcode.o cominputcode.c: In function 'readped': cominputcode.c:1544:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if ((profield - 1) > maxloop) ^ cominputcode.c: In function 'read_loop_file': cominputcode.c:933:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, " %d\n", &num_vects); ^ cominputcode.c:978:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, "%d", &geno); ^ cominputcode.c:1037:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, "%d", &geno); ^ cominputcode.c: In function 'readped': cominputcode.c:1510:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &newped); ^ cominputcode.c:1531:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &sex_); ^ cominputcode.c:1542:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &profield); ^ cominputcode.c:1575:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%*[^\n]"); ^ cominputcode.c:1578:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &newped); ^ cominputcode.c: In function 'getind': cominputcode.c:1436:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", id); ^ cominputcode.c: In function 'readnumber': cominputcode.c:1192:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &j); ^ cominputcode.c: In function 'readbin': cominputcode.c:1165:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &j); ^ cominputcode.c: In function 'readquan': cominputcode.c:1278:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &(*phen)->x[i]); ^ cominputcode.c:1288:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &xval); ^ cominputcode.c:1300:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &xval); ^ cominputcode.c: In function 'readaff': cominputcode.c:1241:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &thisval); ^ cominputcode.c:1256:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &(*phen)->liability); ^ cominputcode.c: In function 'getlocus': cominputcode.c:1825:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%d", &LINK->whichtype, ^ cominputcode.c:1858:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1861:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &LINK->whichtype); ^ cominputcode.c:1885:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &thislocus[V.system - 1]->freq[j]); ^ cominputcode.c:1893:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1897:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &thislocus[V.system - 1]->freqcond[j]); ^ cominputcode.c:1899:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1946:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%*[^\n]", &TEMP); ^ cominputcode.c: In function 'getbin': cominputcode.c:1656:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &LINK->LINK->LINK->nfactor[*system - 1]); ^ cominputcode.c:1673:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &k); ^ cominputcode.c:1678:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c: In function 'getpen': cominputcode.c:1707:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &(*locus)->UU.U0.nclass); ^ cominputcode.c:1719:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U0.pen[i][j][2][l]); ^ cominputcode.c:1728:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1736:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U0.pen[0][i][2][l]); ^ cominputcode.c:1743:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c: In function 'getquan': cominputcode.c:1761:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &(*locus)->UU.U1.ntrait); ^ cominputcode.c:1773:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U1.pm[j][k - 1][i]); ^ cominputcode.c:1778:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1786:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U1.vmat[i][j]); ^ cominputcode.c:1792:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1796:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", &(*locus)->UU.U1.conmat); ^ cominputcode.c: In function 'gettheta': cominputcode.c:1984:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*sex_)->theta[i]); ^ cominputcode.c:1986:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*sex_)->theta[mlocus - 1]); ^ cominputcode.c:1987:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1990:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", &distratio); ^ cominputcode.c: In function 'readped': cominputcode.c:1223:18: warning: 'allsecond' may be used uninitialized in this function [-Wmaybe-uninitialized] WITH->allele2 = allsecond; ^ cominputcode.c:1186:17: note: 'allsecond' was declared here int allfirst, allsecond; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c comrec.c -o ilcomrec.o gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c ilgetvect.c -o ilgetvect.o In file included from ilgetvect.c:87:0: comgetvect.c: In function 'prior': comgetvect.c:71:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency; ^ comgetvect.c:74:6: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency_cond; ^ comgetvect.c:117:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency; ^ comgetvect.c:120:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap2[i]].new_frequency; ^ comgetvect.c:125:4: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency_cond; ^ comgetvect.c:129:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap2[i]].new_frequency_cond; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c ilinputcode.c -o ilinputcode.o ilinputcode.c: In function 'setiterate': ilinputcode.c:178:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &i); ^ ilinputcode.c:358:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d", &itp[i - 1]); ^ ilinputcode.c: In function 'readloci': ilinputcode.c:395:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%d%ld%*[^\n]", &mlocus, &risksys, &autosomal); ^ ilinputcode.c:422:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%lf%lf%ld%*[^\n]", &mutsys, &mutmale, &mutfemale, ^ ilinputcode.c:439:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &j); ^ ilinputcode.c:452:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ ilinputcode.c:474:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &hapfreq->genarray[i]); ^ ilinputcode.c:475:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ ilinputcode.c:489:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &difference); ^ ilinputcode.c:496:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &independent); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c iloldnuclear.c -o iloldnuclear.o In file included from comnuclear.c:1316:0, from iloldnuclear.c:37: oldsegup.c: In function 'oldsegsexup': oldsegup.c:11:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] censorrec *WITH; ^ oldsegup.c: In function 'oldsegup': oldsegup.c:76:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] censorrec *WITH; ^ In file included from iloldnuclear.c:37:0: comnuclear.c: In function 'msegsexdown': comnuclear.c:1324:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable] censorrec *WITH1; ^ comnuclear.c: In function 'msegdown': comnuclear.c:1420:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable] censorrec *WITH1; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -c comlike.c -o comlike.o comlike.c: In function 'recompute_haps': comlike.c:362:16: warning: variable 'tempfgeno' set but not used [-Wunused-but-set-variable] int temphap, tempfgeno, tempall; ^ comlike.c: In function 'find_loopbreaker_genotypes': comlike.c:1434:16: warning: 'temploopmax' may be used uninitialized in this function [-Wmaybe-uninitialized] loopmax[i] = temploopmax; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c commoncode.c -o ilcommoncode.o commoncode.c: In function 'ckptInit': commoncode.c:289:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( scriptCheckpoint , "%d %d" , ^ commoncode.c: In function 'ckptEnsureFileContents': commoncode.c:383:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(dateTimeStamp , ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DILINK -c ilink.c -o ilink.o ilink.c: In function 'inib': ilink.c:1560:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(in1, "%lf", &bmat[i - 1][j]); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall iliostuff.o ilcheck.o ilcominputcode.o ilcomrec.o ilgetvect.o ilinputcode.o iloldnuclear.o automodified.o comlike.o sexmodified.o ilcommoncode.o ilink.o -o .//ilink -lm ilcheck.o: In function `fileErrorHelp': /<>/4.1P/src/check.c:57: warning: the `gets' function is dangerous and should not be used. gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c iostuff.c -o liiostuff.o iostuff.c: In function 'read_till_blank_line': iostuff.c:273:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ iostuff.c: In function 'init_ped_loc_all': iostuff.c:379:15: warning: variable 'templocus' set but not used [-Wunused-but-set-variable] locusvalues **templocus; ^ iostuff.c: At top level: iostuff.c:257:12: warning: 'read_till_blank_line' defined but not used [-Wunused-function] static int read_till_blank_line(infile) ^ iostuff.c: In function 'foundped': iostuff.c:319:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(inputline,DEFAULT_STRING_LENGTH,ipedfile); /* get a line */ ^ iostuff.c: In function 'check_constants': iostuff.c:195:72: warning: 'worst_ped' may be used uninitialized in this function [-Wmaybe-uninitialized] printf("\n%d alleles are needed at locus %d",ped_new_allele_count[worst_ped][l], l + 1); ^ iostuff.c: In function 'adjust_alleles': iostuff.c:517:31: warning: 'cond_present_freq_sum' may be used uninitialized in this function [-Wmaybe-uninitialized] cond_present_freq_sum += ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c check.c -o licheck.o check.c: In function 'fileErrorHelp': check.c:57:3: warning: implicit declaration of function 'gets' [-Wimplicit-function-declaration] gets ( theLine ) ; ^ check.c: In function 'recoveryErrorHelp': check.c:117:11: warning: unused variable 'helpTextFile' [-Wunused-variable] FILE * helpTextFile ; ^ check.c: In function 'getCkptTuple': check.c:194:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d %d %d %d" , ^ check.c: In function 'getCkptNumber': check.c:427:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread ( numberPtr , numberSize , 1 , checkpointDatafile ) ; ^ check.c: In function 'recoverCheckpoint': check.c:584:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets ( dateTimeStamp , DateTimeStampStringLength , checkpointDatafile ) ; ^ check.c:592:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d" , extra ) ; ^ check.c:594:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d" , & dummy ) ; ^ check.c:595:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%s" , theLine ) ; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c cominputcode.c -o licominputcode.o cominputcode.c: In function 'readped': cominputcode.c:1544:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if ((profield - 1) > maxloop) ^ cominputcode.c: In function 'read_loop_file': cominputcode.c:933:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, " %d\n", &num_vects); ^ cominputcode.c:978:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, "%d", &geno); ^ cominputcode.c:1037:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, "%d", &geno); ^ cominputcode.c: In function 'readped': cominputcode.c:1510:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &newped); ^ cominputcode.c:1531:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &sex_); ^ cominputcode.c:1542:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &profield); ^ cominputcode.c:1575:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%*[^\n]"); ^ cominputcode.c:1578:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &newped); ^ cominputcode.c: In function 'getind': cominputcode.c:1436:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", id); ^ cominputcode.c: In function 'readnumber': cominputcode.c:1192:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &j); ^ cominputcode.c: In function 'readbin': cominputcode.c:1165:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &j); ^ cominputcode.c: In function 'readquan': cominputcode.c:1278:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &(*phen)->x[i]); ^ cominputcode.c:1288:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &xval); ^ cominputcode.c:1300:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &xval); ^ cominputcode.c: In function 'readaff': cominputcode.c:1241:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &thisval); ^ cominputcode.c:1256:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &(*phen)->liability); ^ cominputcode.c: In function 'getlocus': cominputcode.c:1825:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%d", &LINK->whichtype, ^ cominputcode.c:1858:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1861:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &LINK->whichtype); ^ cominputcode.c:1885:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &thislocus[V.system - 1]->freq[j]); ^ cominputcode.c:1893:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1897:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &thislocus[V.system - 1]->freqcond[j]); ^ cominputcode.c:1899:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1946:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%*[^\n]", &TEMP); ^ cominputcode.c: In function 'getbin': cominputcode.c:1656:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &LINK->LINK->LINK->nfactor[*system - 1]); ^ cominputcode.c:1673:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &k); ^ cominputcode.c:1678:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c: In function 'getpen': cominputcode.c:1707:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &(*locus)->UU.U0.nclass); ^ cominputcode.c:1719:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U0.pen[i][j][2][l]); ^ cominputcode.c:1728:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1736:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U0.pen[0][i][2][l]); ^ cominputcode.c:1743:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c: In function 'getquan': cominputcode.c:1761:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &(*locus)->UU.U1.ntrait); ^ cominputcode.c:1773:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U1.pm[j][k - 1][i]); ^ cominputcode.c:1778:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1786:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U1.vmat[i][j]); ^ cominputcode.c:1792:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1796:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", &(*locus)->UU.U1.conmat); ^ cominputcode.c: In function 'gettheta': cominputcode.c:1984:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*sex_)->theta[i]); ^ cominputcode.c:1986:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*sex_)->theta[mlocus - 1]); ^ cominputcode.c:1987:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1990:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", &distratio); ^ cominputcode.c: In function 'readped': cominputcode.c:1223:18: warning: 'allsecond' may be used uninitialized in this function [-Wmaybe-uninitialized] WITH->allele2 = allsecond; ^ cominputcode.c:1186:17: note: 'allsecond' was declared here int allfirst, allsecond; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c comrec.c -o licomrec.o gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c ligetvect.c -o ligetvect.o In file included from ligetvect.c:86:0: comgetvect.c: In function 'prior': comgetvect.c:71:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency; ^ comgetvect.c:74:6: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency_cond; ^ comgetvect.c:117:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency; ^ comgetvect.c:120:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap2[i]].new_frequency; ^ comgetvect.c:125:4: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency_cond; ^ comgetvect.c:129:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap2[i]].new_frequency_cond; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c liinputcode.c -o liinputcode.o liinputcode.c: In function 'readloci': liinputcode.c:25:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%d%ld%*[^\n]", &mlocus, &risksys, &autosomal); ^ liinputcode.c:53:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%lf%lf%ld%*[^\n]", &mutsys, &mutmale, &mutfemale, ^ liinputcode.c:70:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &j); ^ liinputcode.c:83:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ liinputcode.c:105:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &hapfreq->genarray[i]); ^ liinputcode.c:106:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ liinputcode.c:120:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &difference); ^ liinputcode.c:127:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &independent); ^ liinputcode.c:145:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%lf%d%*[^\n]", &whichvary, &finaltheta, &gridsize); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c lioldnuclear.c -o lioldnuclear.o In file included from comnuclear.c:1316:0, from lioldnuclear.c:35: oldsegup.c: In function 'oldsegsexup': oldsegup.c:11:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] censorrec *WITH; ^ oldsegup.c: In function 'oldsegup': oldsegup.c:76:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] censorrec *WITH; ^ In file included from lioldnuclear.c:35:0: comnuclear.c: In function 'msegsexdown': comnuclear.c:1324:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable] censorrec *WITH1; ^ comnuclear.c: In function 'msegdown': comnuclear.c:1420:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable] censorrec *WITH1; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c commoncode.c -o licommoncode.o commoncode.c: In function 'ckptInit': commoncode.c:289:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( scriptCheckpoint , "%d %d" , ^ commoncode.c: In function 'ckptEnsureFileContents': commoncode.c:383:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(dateTimeStamp , ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DLINKMAP -c linkmap.c -o linkmap.o linkmap.c: In function 'iterpeds': linkmap.c:310:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(s_save,"%d",&ppid); /* get ppid from the file */ ^ linkmap.c:314:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(s_save,"%d",&omlocus); /* get mlocus from other run */ ^ linkmap.c:351:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(instr,DEFAULT_STR_LENGTH,s_screen); ^ linkmap.c:354:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(instr,DEFAULT_STR_LENGTH,s_screen); ^ linkmap.c:358:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(instr,DEFAULT_STR_LENGTH,s_outfile); ^ linkmap.c:361:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(instr,DEFAULT_STR_LENGTH,s_outfile); ^ linkmap.c:365:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(instr,DEFAULT_STR_LENGTH,s_stream); ^ linkmap.c:368:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(instr,DEFAULT_STR_LENGTH,s_stream); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall liiostuff.o licheck.o licominputcode.o licomrec.o ligetvect.o liinputcode.o lioldnuclear.o automodified.o comlike.o sexmodified.o licommoncode.o linkmap.o -o .//linkmap -lm licheck.o: In function `fileErrorHelp': /<>/4.1P/src/check.c:57: warning: the `gets' function is dangerous and should not be used. gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c iostuff.c -o mliostuff.o iostuff.c: In function 'read_till_blank_line': iostuff.c:273:1: warning: no return statement in function returning non-void [-Wreturn-type] } ^ iostuff.c: In function 'init_ped_loc_all': iostuff.c:379:15: warning: variable 'templocus' set but not used [-Wunused-but-set-variable] locusvalues **templocus; ^ iostuff.c: At top level: iostuff.c:257:12: warning: 'read_till_blank_line' defined but not used [-Wunused-function] static int read_till_blank_line(infile) ^ iostuff.c: In function 'foundped': iostuff.c:319:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(inputline,DEFAULT_STRING_LENGTH,ipedfile); /* get a line */ ^ iostuff.c: In function 'check_constants': iostuff.c:195:72: warning: 'worst_ped' may be used uninitialized in this function [-Wmaybe-uninitialized] printf("\n%d alleles are needed at locus %d",ped_new_allele_count[worst_ped][l], l + 1); ^ iostuff.c: In function 'adjust_alleles': iostuff.c:517:31: warning: 'cond_present_freq_sum' may be used uninitialized in this function [-Wmaybe-uninitialized] cond_present_freq_sum += ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c check.c -o mlcheck.o check.c: In function 'fileErrorHelp': check.c:57:3: warning: implicit declaration of function 'gets' [-Wimplicit-function-declaration] gets ( theLine ) ; ^ check.c: In function 'recoveryErrorHelp': check.c:117:11: warning: unused variable 'helpTextFile' [-Wunused-variable] FILE * helpTextFile ; ^ check.c: In function 'getCkptTuple': check.c:194:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d %d %d %d" , ^ check.c: In function 'getCkptNumber': check.c:427:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread ( numberPtr , numberSize , 1 , checkpointDatafile ) ; ^ check.c: In function 'recoverCheckpoint': check.c:584:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets ( dateTimeStamp , DateTimeStampStringLength , checkpointDatafile ) ; ^ check.c:592:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d" , extra ) ; ^ check.c:594:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%d" , & dummy ) ; ^ check.c:595:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( checkpointDatafile , "%s" , theLine ) ; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c cominputcode.c -o mlcominputcode.o cominputcode.c: In function 'readped': cominputcode.c:1544:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if ((profield - 1) > maxloop) ^ cominputcode.c: In function 'read_loop_file': cominputcode.c:933:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, " %d\n", &num_vects); ^ cominputcode.c:978:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, "%d", &geno); ^ cominputcode.c:1037:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(loopfile, "%d", &geno); ^ cominputcode.c: In function 'readped': cominputcode.c:1510:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &newped); ^ cominputcode.c:1531:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &sex_); ^ cominputcode.c:1542:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &profield); ^ cominputcode.c:1575:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%*[^\n]"); ^ cominputcode.c:1578:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &newped); ^ cominputcode.c: In function 'getind': cominputcode.c:1436:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", id); ^ cominputcode.c: In function 'readnumber': cominputcode.c:1192:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &j); ^ cominputcode.c: In function 'readbin': cominputcode.c:1165:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &j); ^ cominputcode.c: In function 'readquan': cominputcode.c:1278:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &(*phen)->x[i]); ^ cominputcode.c:1288:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &xval); ^ cominputcode.c:1300:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%lf", &xval); ^ cominputcode.c: In function 'readaff': cominputcode.c:1241:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &thisval); ^ cominputcode.c:1256:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ipedfile, "%ld", &(*phen)->liability); ^ cominputcode.c: In function 'getlocus': cominputcode.c:1825:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%d", &LINK->whichtype, ^ cominputcode.c:1858:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1861:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &LINK->whichtype); ^ cominputcode.c:1885:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &thislocus[V.system - 1]->freq[j]); ^ cominputcode.c:1893:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1897:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &thislocus[V.system - 1]->freqcond[j]); ^ cominputcode.c:1899:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1946:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%*[^\n]", &TEMP); ^ cominputcode.c: In function 'getbin': cominputcode.c:1656:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &LINK->LINK->LINK->nfactor[*system - 1]); ^ cominputcode.c:1673:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &k); ^ cominputcode.c:1678:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c: In function 'getpen': cominputcode.c:1707:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &(*locus)->UU.U0.nclass); ^ cominputcode.c:1719:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U0.pen[i][j][2][l]); ^ cominputcode.c:1728:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1736:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U0.pen[0][i][2][l]); ^ cominputcode.c:1743:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c: In function 'getquan': cominputcode.c:1761:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &(*locus)->UU.U1.ntrait); ^ cominputcode.c:1773:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U1.pm[j][k - 1][i]); ^ cominputcode.c:1778:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1786:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*locus)->UU.U1.vmat[i][j]); ^ cominputcode.c:1792:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1796:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", &(*locus)->UU.U1.conmat); ^ cominputcode.c: In function 'gettheta': cominputcode.c:1984:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*sex_)->theta[i]); ^ cominputcode.c:1986:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &(*sex_)->theta[mlocus - 1]); ^ cominputcode.c:1987:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ cominputcode.c:1990:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%*[^\n]", &distratio); ^ cominputcode.c: In function 'readped': cominputcode.c:1223:18: warning: 'allsecond' may be used uninitialized in this function [-Wmaybe-uninitialized] WITH->allele2 = allsecond; ^ cominputcode.c:1186:17: note: 'allsecond' was declared here int allfirst, allsecond; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c comrec.c -o mlcomrec.o gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c mlgetvect.c -o mlgetvect.o In file included from mlgetvect.c:84:0: comgetvect.c: In function 'prior': comgetvect.c:71:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency; ^ comgetvect.c:74:6: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency_cond; ^ comgetvect.c:117:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency; ^ comgetvect.c:120:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap2[i]].new_frequency; ^ comgetvect.c:125:4: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap1[i]].new_frequency_cond; ^ comgetvect.c:129:3: warning: array subscript has type 'char' [-Wchar-subscripts] [LINK->LINK->hap2[i]].new_frequency_cond; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c mlinputcode.c -o mlinputcode.o mlinputcode.c: In function 'readloci': mlinputcode.c:23:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%d%ld%*[^\n]", &mlocus, &risksys, &autosomal); ^ mlinputcode.c:51:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%d%lf%lf%ld%*[^\n]", &mutsys, &mutmale, &mutfemale, ^ mlinputcode.c:68:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &j); ^ mlinputcode.c:81:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ mlinputcode.c:103:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &hapfreq->genarray[i]); ^ mlinputcode.c:104:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ mlinputcode.c:118:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &difference); ^ mlinputcode.c:125:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &independent); ^ mlinputcode.c:143:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%lf%lf%*[^\n]", &which, &inc, &finish); ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c mloldnuclear.c -o mloldnuclear.o In file included from comnuclear.c:1316:0, from mloldnuclear.c:34: oldsegup.c: In function 'oldsegsexup': oldsegup.c:11:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] censorrec *WITH; ^ oldsegup.c: In function 'oldsegup': oldsegup.c:76:14: warning: variable 'WITH' set but not used [-Wunused-but-set-variable] censorrec *WITH; ^ In file included from mloldnuclear.c:34:0: comnuclear.c: In function 'msegsexdown': comnuclear.c:1324:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable] censorrec *WITH1; ^ comnuclear.c: In function 'msegdown': comnuclear.c:1420:14: warning: variable 'WITH1' set but not used [-Wunused-but-set-variable] censorrec *WITH1; ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c commoncode.c -o mlcommoncode.o commoncode.c: In function 'ckptInit': commoncode.c:289:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf ( scriptCheckpoint , "%d %d" , ^ commoncode.c: In function 'ckptEnsureFileContents': commoncode.c:383:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(dateTimeStamp , ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -DMLINK -c mlink.c -o mlink.o mlink.c: In function 'iterpeds': mlink.c:283:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if (byfamily && (normalRun == checkpointStatus)) ^ mlink.c:291:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses] if (normalRun == checkpointStatus) ^ mlink.c: In function 'ipedLoop': mlink.c:500:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf%lf%lf%*[^\n]", &maletheta->theta[which - 1], &inc, ^ gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall mliostuff.o mlcheck.o mlcominputcode.o mlcomrec.o mlgetvect.o mlinputcode.o mloldnuclear.o automodified.o comlike.o sexmodified.o mlcommoncode.o mlink.o -o .//mlink -lm mlcheck.o: In function `fileErrorHelp': /<>/4.1P/src/check.c:57: warning: the `gets' function is dangerous and should not be used. gcc -O unknown.c -c -o unknown.o unknown.c: In function 'malloc_err': unknown.c:148:5: warning: implicit declaration of function 'time' [-Wimplicit-function-declaration] time (&secondsNow); ^ unknown.c:149:30: warning: implicit declaration of function 'ctime' [-Wimplicit-function-declaration] fprintf(errorfile,"\n%s",ctime(&secondsNow)); ^ unknown.c:149:23: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat=] fprintf(errorfile,"\n%s",ctime(&secondsNow)); ^ unknown.c: In function 'prelim_iterpeds': unknown.c:4359:23: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] fprintf(countfile,"At locus %d person %d has %d homozygous genotypes and\n %d heterozygous genotypes\n",whichsys,i,homoz,heteroz); ^ unknown.c: In function 'adjustIds': unknown.c:258:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(localpedfile," %d%d%d%d%d%d%d",&inped, &person_id, &pa_id, &ma_id, &foff_id, &npa_id, &nma_id); ^ unknown.c:385:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(localpedfile," %d%d%d%d%d%d%d",&inped, &person_id, &pa_id, &ma_id, &foff_id, &npa_id, &nma_id); ^ unknown.c:409:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(localpedfile," %d%d%d%d%d%d%d",&inped, &person_id, &pa_id, &ma_id, &foff_id, &npa_id, &nma_id); ^ unknown.c: In function 'read_till_blank_line': unknown.c:437:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(intext,DEFAULT_STRING_LENGTH,infile); /* get new line */ ^ unknown.c: In function 'readbin': unknown.c:2216:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &j); ^ unknown.c: In function 'respond': unknown.c:824:3: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%*[^\n]"); ^ unknown.c: In function 'readnumber': unknown.c:2235:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld%ld", &j, &k); ^ unknown.c: In function 'readaff': unknown.c:2276:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &thisval); ^ unknown.c:2291:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &WITH->liability); ^ unknown.c: In function 'readquan': unknown.c:2313:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%lg", &WITH->x[i]); ^ unknown.c:2323:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%lg", &xval); ^ unknown.c:2335:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%lg", &xval); ^ unknown.c: In function 'getind': unknown.c:2383:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", seq); ^ unknown.c: In function 'getrest': unknown.c:2443:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%*[^\n]"); ^ unknown.c: In function 'getquan': unknown.c:2615:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &WITH->UU.ntrait); ^ unknown.c:2622:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c: In function 'getpen': unknown.c:2636:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &WITH->UU.U0.nclass); ^ unknown.c:2648:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg", &WITH->UU.U0.pen[i][j][2][l]); ^ unknown.c:2657:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c:2665:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg", &WITH->UU.U0.pen[0][i][2][l]); ^ unknown.c:2671:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c: In function 'getbin': unknown.c:2687:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &WITH->UU.U2.nfactor); ^ unknown.c:2701:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &k); ^ unknown.c:2706:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c: In function 'getlocus': unknown.c:2741:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%ld", &LINK->whichtype, &WITH->nallele); ^ unknown.c:2771:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c:2772:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lf", &thislocus[V.system - 1]->onefreq); ^ unknown.c:2775:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c:2779:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c:2783:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c:2805:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c: In function 'testhets': unknown.c:4455:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%lg%ld%ld%*[^\n]", &numl, &b_, &sexl, &prog); ^ unknown.c:4457:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%lg%lg%ld%*[^\n]", &a_, &b_, &c, &d); ^ unknown.c:4465:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4468:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &lc); ^ unknown.c:4472:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &nall); ^ unknown.c:4474:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c:4476:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &nqv); ^ unknown.c:4479:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4482:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4484:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4489:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &nall); ^ unknown.c:4491:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4493:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &nall); ^ unknown.c:4497:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4502:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4509:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &nall); ^ unknown.c:4512:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4516:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4522:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%*[^\n]", &nall); ^ unknown.c:4524:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4527:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4533:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%ld%*[^\n]", &sexd, &int_); ^ unknown.c:4536:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4539:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4548:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%lg%*[^\n]", &a_); ^ unknown.c:4551:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld", &d); ^ unknown.c: In function 'main_old': unknown.c:4694:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%*[^\n]"); ^ unknown.c:4699:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &newped); ^ unknown.c: In function 'initunknown': unknown.c:4596:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%*[^\n]"); ^ unknown.c: In function 'readloci': unknown.c:2819:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%ld%ld%*[^\n]", &nsystem, &risksys, &autosomal); ^ unknown.c:2833:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%ld%lf%lf%ld%*[^\n]", &mutsys, &mu, &mu, &coupling); ^ unknown.c:2837:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(datafile, "%*[^\n]"); ^ unknown.c: In function 'readped': unknown.c:2511:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &WITH->sex); ^ unknown.c:2515:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &WITH->profield); ^ unknown.c:2556:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &newped); ^ unknown.c: In function 'main_new_first': unknown.c:5039:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%*[^\n]"); ^ unknown.c:5047:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &newped); ^ unknown.c: In function 'main_new_second': unknown.c:5170:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%*[^\n]"); ^ unknown.c:5176:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &newped); ^ gcc -O loopbrk.c -c -o loopbrk.o loopbrk.c: In function 'GetSecs': loopbrk.c:164:10: warning: implicit declaration of function 'time' [-Wimplicit-function-declaration] return time(NULL); ^ loopbrk.c: In function 'open_files': loopbrk.c:108:7: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%*[^\n]"); ^ loopbrk.c:126:7: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%*[^\n]"); ^ loopbrk.c: In function 'Read_homoz_heteroz': loopbrk.c:1130:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(str1, COUNTFILE_LINE_LENGTH, countfile); ^ loopbrk.c:1136:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(str2, COUNTFILE_LINE_LENGTH -1, countfile); ^ loopbrk.c: In function 'read_write_ped_non_loop': loopbrk.c:1182:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &PersonInfo); ^ loopbrk.c:1185:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(rest, pedLineLength - 1, pedfile); ^ loopbrk.c:1193:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", nextPedigreeId); ^ loopbrk.c: In function 'readped_with_loop': loopbrk.c:1498:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &PersonInfo); ^ loopbrk.c:1503:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", &PersonInfo); ^ loopbrk.c:1507:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(rest[PersonId], pedLineLength, pedfile); ^ loopbrk.c:1530:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile, "%ld", nextPedigreeId); ^ loopbrk.c: In function 'computeLineLength': loopbrk.c:2083:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile,"%c", &c); ^ loopbrk.c: In function 'detectLoopedPedigrees': loopbrk.c:2267:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile,"%ld",&nextPedigreeId); ^ loopbrk.c: In function 'loopbreakers': loopbrk.c:2329:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile,"%ld",&nextPedigreeId); ^ loopbrk.c:2335:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(countfile, "Pedigree %d\n", &PedigreeWithLoops); ^ loopbrk.c: In function 'loopbreakers2': loopbrk.c:2391:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pedfile,"%ld",&nextPedigreeId); ^ loopbrk.c:2397:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(countfile, "Pedigree %d\n", &PedigreeWithLoops); ^ gcc -O loopbrk.o unknown.o -o .//unknown -lm make[1]: Leaving directory '/<>/4.1P/src' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." DEB_MAKE_CHECK_TARGET unset, not running checks DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target Adding cdbs dependencies to debian/fastlink.substvars dh_installdirs -pfastlink dh_installdocs -pfastlink ./README dh_installexamples -pfastlink dh_installman -pfastlink dh_installinfo -pfastlink dh_installmenu -pfastlink dh_installcron -pfastlink dh_installinit -pfastlink dh_installdebconf -pfastlink dh_installemacsen -pfastlink dh_installcatalogs -pfastlink dh_installpam -pfastlink dh_installlogrotate -pfastlink dh_installlogcheck -pfastlink dh_installchangelogs -pfastlink dh_installudev -pfastlink dh_lintian -pfastlink dh_bugfiles -pfastlink dh_install -pfastlink dh_link -pfastlink dh_installmime -pfastlink dh_installgsettings -pfastlink dh_strip -pfastlink dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform s390x: fastlink dh_strip debug symbol extraction: packages to act on: fastlink dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_compress -pfastlink dh_fixperms -pfastlink dh_makeshlibs -pfastlink dh_installdeb -pfastlink dh_perl -pfastlink dh_shlibdeps -pfastlink dh_gencontrol -pfastlink dpkg-gencontrol: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform s390x: fastlink dh_gencontrol debug symbol wrapper: packages to act on: fastlink dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package fastlink (pkgdir debian/fastlink, ddeb package dir debian/fastlink-dbgsym) dh_gencontrol debug symbol wrapper: building fastlink-dbgsym_4.1P-fix95-3_s390x.ddeb dpkg-deb: building package 'fastlink-dbgsym' in '../fastlink-dbgsym_4.1P-fix95-3_s390x.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile fastlink-dbgsym_4.1P-fix95-3_s390x.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pfastlink ; fi dh_md5sums -pfastlink dh_builddeb -pfastlink INFO: pkgstriptranslations version 123 pkgstriptranslations: processing fastlink (in debian/fastlink); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastlink/DEBIAN/control, package fastlink, directory debian/fastlink pkgstripfiles: Truncating usr/share/doc/fastlink/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package fastlink ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fastlink' in '../fastlink_4.1P-fix95-3_s390x.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../fastlink_4.1P-fix95-3_s390x.changes dpkg-genchanges: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build fastlink-4.1P-fix95 dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file dpkg-buildpackage: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20151204-1929 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fastlink_4.1P-fix95-3_s390x.changes: ------------------------------------ Format: 1.8 Date: Mon, 19 Dec 2011 10:34:20 +0100 Source: fastlink Binary: fastlink fastlink-doc Architecture: s390x Version: 4.1P-fix95-3 Distribution: xenial Urgency: low Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: fastlink - faster version of pedigree programs of Linkage fastlink-doc - Some papers about fastlink Closes: 639998 Changes: fastlink (4.1P-fix95-3) unstable; urgency=low . * Replaced debian/*.desktop by debian/menu to make sure users of modern desktop systems using freedesktop.org standards will not be confused by a missing graphical interface Closes: #639998 * debian/control: - Standards-Version: 3.9.2 (no changes needed) - Fixed Vcs fields - Dropped article in short description * Debhelper 8 (control+compat) Checksums-Sha1: 1c32848d75d235d5e2a25de7669955b392966d70 235322 fastlink-dbgsym_4.1P-fix95-3_s390x.ddeb d7557c9aa6b18ed2d759aec26135446c8d019fbe 250848 fastlink_4.1P-fix95-3_s390x.deb Checksums-Sha256: 6da727cd0544ada5d3ff5bff933df33c5c1f1612294aa4188ca87d02616ef21b 235322 fastlink-dbgsym_4.1P-fix95-3_s390x.ddeb 11c5ad19076187c2cf61c272b6194114a098853335ae40548ea457e19d7e34f8 250848 fastlink_4.1P-fix95-3_s390x.deb Files: 93c3a9baf22253cf9ed0223fa0a228a2 235322 science extra fastlink-dbgsym_4.1P-fix95-3_s390x.ddeb 8218179686200c6ee35dfcd778ec2c70 250848 science optional fastlink_4.1P-fix95-3_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fastlink_4.1P-fix95-3_s390x.deb ------------------------------- new debian package, version 2.0. size 250848 bytes: control archive=2104 bytes. 1454 bytes, 31 lines control 2163 bytes, 32 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: fastlink Version: 4.1P-fix95-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 982 Depends: libc6 (>= 2.7) Suggests: fastlink-doc Section: science Priority: optional Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html Description: faster version of pedigree programs of Linkage Genetic linkage analysis is a statistical technique used to map genes and find the approximate location of disease genes. There was a standard software package for genetic linkage called LINKAGE. FASTLINK is a significantly modified and improved version of the main programs of LINKAGE that runs much faster sequentially, can run in parallel, allows the user to recover gracefully from a computer crash, and provides abundant new documentation. FASTLINK has been used in over 1000 published genetic linkage studies. . This package contains the following programs: ilink: GEMINI optimization procedure to find a locally optimal value of the theta vector of recombination fractions linkmap: calculates location scores of one locus against a fixed map of other loci lodscore: compares likelihoods at locally optimal theta mlink: calculates lod scores and risk with two of more loci unknown: identify possible genotypes for unknowns drwxr-xr-x root/root 0 2015-12-04 19:29 ./ drwxr-xr-x root/root 0 2015-12-04 19:29 ./usr/ drwxr-xr-x root/root 0 2015-12-04 19:29 ./usr/bin/ -rwxr-xr-x root/root 209192 2015-12-04 19:29 ./usr/bin/ilink -rwxr-xr-x root/root 188808 2015-12-04 19:29 ./usr/bin/linkmap -rwxr-xr-x root/root 196872 2015-12-04 19:29 ./usr/bin/lodscore -rwxr-xr-x root/root 184688 2015-12-04 19:29 ./usr/bin/mlink -rwxr-xr-x root/root 100960 2015-12-04 19:29 ./usr/bin/unknown drwxr-xr-x root/root 0 2015-12-04 19:29 ./usr/share/ drwxr-xr-x root/root 0 2015-12-04 19:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-12-04 19:29 ./usr/share/doc/fastlink/ -rw-r--r-- root/root 687 2008-11-17 06:38 ./usr/share/doc/fastlink/README.Debian -rw-r--r-- root/root 2472 1999-07-03 19:08 ./usr/share/doc/fastlink/README.ILINK.gz -rw-r--r-- root/root 606 1999-08-19 13:48 ./usr/share/doc/fastlink/README.Linux -rw-r--r-- root/root 3007 1999-07-03 19:08 ./usr/share/doc/fastlink/README.TreadMarks.gz -rw-r--r-- root/root 1894 1999-07-03 19:08 ./usr/share/doc/fastlink/README.allele.gz -rw-r--r-- root/root 2569 2001-12-18 18:00 ./usr/share/doc/fastlink/README.bugreport -rw-r--r-- root/root 6648 1999-07-03 19:08 ./usr/share/doc/fastlink/README.checkpoint.gz -rw-r--r-- root/root 2460 1999-07-03 19:08 ./usr/share/doc/fastlink/README.constants.gz -rw-r--r-- root/root 3857 1999-09-17 00:39 ./usr/share/doc/fastlink/README.gz -rw-r--r-- root/root 1699 1999-07-03 19:08 ./usr/share/doc/fastlink/README.mapfun.gz -rw-r--r-- root/root 2856 1999-07-03 19:08 ./usr/share/doc/fastlink/README.memory -rw-r--r-- root/root 6990 1999-07-03 19:08 ./usr/share/doc/fastlink/README.p4.gz -rw-r--r-- root/root 3075 1999-07-03 19:08 ./usr/share/doc/fastlink/README.parallel.gz -rw-r--r-- root/root 3140 1999-07-03 19:08 ./usr/share/doc/fastlink/README.scaling -rw-r--r-- root/root 2244 1999-07-03 19:08 ./usr/share/doc/fastlink/README.time -rw-r--r-- root/root 9847 1999-07-03 19:08 ./usr/share/doc/fastlink/README.trouble.gz -rw-r--r-- root/root 2895 1999-07-03 19:08 ./usr/share/doc/fastlink/README.unknown -rw-r--r-- root/root 13988 2008-02-28 14:29 ./usr/share/doc/fastlink/README.updates.gz -rw-r--r-- root/root 2326 2015-12-04 19:29 ./usr/share/doc/fastlink/changelog.Debian.gz -rw-r--r-- root/root 1404 2011-01-14 07:40 ./usr/share/doc/fastlink/copyright -rw-r--r-- root/root 17206 2008-11-17 06:38 ./usr/share/doc/fastlink/fastlink.html drwxr-xr-x root/root 0 2015-12-04 19:29 ./usr/share/man/ drwxr-xr-x root/root 0 2015-12-04 19:29 ./usr/share/man/man1/ -rw-r--r-- root/root 1272 2015-12-04 19:29 ./usr/share/man/man1/ilink.1.gz -rw-r--r-- root/root 621 2015-12-04 19:29 ./usr/share/man/man1/linkmap.1.gz -rw-r--r-- root/root 792 2015-12-04 19:29 ./usr/share/man/man1/lodscore.1.gz -rw-r--r-- root/root 612 2015-12-04 19:29 ./usr/share/man/man1/mlink.1.gz -rw-r--r-- root/root 1004 2015-12-04 19:29 ./usr/share/man/man1/unknown.1.gz drwxr-xr-x root/root 0 2015-12-04 19:29 ./usr/share/menu/ -rw-r--r-- root/root 1056 2011-12-19 09:32 ./usr/share/menu/fastlink +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 12616 Build-Time: 22 Distribution: xenial Host Architecture: s390x Install-Time: 22 Job: fastlink_4.1P-fix95-3.dsc Machine Architecture: s390x Package: fastlink Package-Time: 46 Source-Version: 4.1P-fix95-3 Space: 12616 Status: successful Version: 4.1P-fix95-3 -------------------------------------------------------------------------------- Finished at 20151204-1929 Build needed 00:00:46, 12616k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8373679'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8373679/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8373679'] Unmounting chroot for build PACKAGEBUILD-8373679... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8373679'] Removing build PACKAGEBUILD-8373679