https://launchpad.net/ubuntu/+source/fastqtl/2.184+dfsg-7build1/+build/18638255 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-035 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 31 Jan 21:46:45 ntpdate[1942]: adjust time server 10.211.37.1 offset -0.010503 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18638255 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18638255 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18638255 Starting target for build PACKAGEBUILD-18638255 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18638255 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18638255 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18638255 Updating target for build PACKAGEBUILD-18638255 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [936 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8320 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5141 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [69.0 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [42.7 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [459 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [245 kB] Fetched 16.4 MB in 7s (2473 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libctf-nobfd0 libctf0 libffi7 libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 102 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 56.5 MB of archives. After this operation, 37.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main armhf linux-libc-dev armhf 5.4.0-13.16 [1111 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22-2 [460 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libcc1-0 armhf 9.2.1-25ubuntu1 [34.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libctf-nobfd0 armhf 2.33.90.20200122-1ubuntu2 [37.4 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libctf0 armhf 2.33.90.20200122-1ubuntu2 [37.0 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.33.90.20200122-1ubuntu2 [2094 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.33.90.20200122-1ubuntu2 [318 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf binutils-common armhf 2.33.90.20200122-1ubuntu2 [206 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf binutils armhf 2.33.90.20200122-1ubuntu2 [3372 B] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9-base armhf 9.2.1-25ubuntu1 [19.1 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf libgcc1 armhf 1:9.2.1-25ubuntu1 [37.3 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libgomp1 armhf 9.2.1-25ubuntu1 [77.4 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf libatomic1 armhf 9.2.1-25ubuntu1 [7080 B] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf libasan5 armhf 9.2.1-25ubuntu1 [387 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf libubsan1 armhf 9.2.1-25ubuntu1 [118 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf g++-9 armhf 9.2.1-25ubuntu1 [6685 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++-9-dev armhf 9.2.1-25ubuntu1 [1778 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-9-dev armhf 9.2.1-25ubuntu1 [686 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf gcc-9 armhf 9.2.1-25ubuntu1 [6537 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf cpp-9 armhf 9.2.1-25ubuntu1 [5875 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++6 armhf 9.2.1-25ubuntu1 [451 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-5ubuntu1 [576 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf bsdutils armhf 1:2.34-0.1ubuntu5 [58.3 kB] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main armhf grep armhf 3.4-1 [141 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf login armhf 1:4.8-1ubuntu1 [217 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.1+20191019-1ubuntu1 [163 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf libblkid1 armhf 2.34-0.1ubuntu5 [125 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libuuid1 armhf 2.34-0.1ubuntu5 [19.7 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libfdisk1 armhf 2.34-0.1ubuntu5 [163 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libselinux1 armhf 3.0-1 [60.1 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libmount1 armhf 2.34-0.1ubuntu5 [135 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.1+20191019-1ubuntu1 [79.7 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.1+20191019-1ubuntu1 [72.8 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.1+20191019-1ubuntu1 [106 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf libsmartcols1 armhf 2.34-0.1ubuntu5 [89.1 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf fdisk armhf 2.34-0.1ubuntu5 [109 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf util-linux armhf 2.34-0.1ubuntu5 [957 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf libdebconfclient0 armhf 0.250ubuntu2 [5776 B] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.30-0ubuntu3 [496 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-1ubuntu1 [19.2 kB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgpg-error0 armhf 1.36-7ubuntu1 [49.8 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf systemd-sysv armhf 244.1-0ubuntu2 [9364 B] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu1 [29.4 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:65 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcap-ng0 armhf 0.7.9-2.1build1 [9688 B] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu5 [35.9 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libcap2 armhf 1:2.27-1 [12.7 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf libudev1 armhf 244.1-0ubuntu2 [69.1 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.155-2ubuntu8 [118 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-6 [25.6 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libssl1.1 armhf 1.1.1d-2ubuntu3 [1080 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-1ubuntu1 [163 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf libffi7 armhf 3.3-3 [16.5 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.19-2 [169 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.15.0-2 [33.0 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2ubuntu2 [733 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf libkmod2 armhf 26-3ubuntu1 [37.0 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf libseccomp2 armhf 2.4.2-2ubuntu2 [32.5 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf mount armhf 2.34-0.1ubuntu5 [108 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf systemd armhf 244.1-0ubuntu2 [3533 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libsystemd0 armhf 244.1-0ubuntu2 [240 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-1 [207 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.8 [774 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 1.9.8 [1236 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf logsave armhf 1.45.3-4ubuntu3 [9172 B] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf libext2fs2 armhf 1.45.3-4ubuntu3 [168 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf e2fsprogs armhf 1.45.3-4ubuntu3 [506 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage-common all 3.0-1 [9880 B] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage1 armhf 3.0-1 [73.9 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main armhf passwd armhf 1:4.8-1ubuntu1 [748 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf libcom-err2 armhf 1.45.3-4ubuntu3 [8164 B] Get:101 http://ftpmaster.internal/ubuntu focal/main armhf libss2 armhf 1.45.3-4ubuntu3 [9384 B] Get:102 http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main armhf libsqlite3-0 armhf 3.30.1-1ubuntu1 [460 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main armhf openssl armhf 1.1.1d-2ubuntu3 [595 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main armhf libassuan0 armhf 2.5.3-7ubuntu2 [29.1 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.5 MB in 3s (21.6 MB/s) (Reading database ... 12487 files and directories 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Setting up libncurses6:armhf (6.1+20191019-1ubuntu1) ... Setting up libatomic1:armhf (9.2.1-25ubuntu1) ... Setting up libss2:armhf (1.45.3-4ubuntu3) ... Setting up logsave (1.45.3-4ubuntu3) ... Setting up libubsan1:armhf (9.2.1-25ubuntu1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.155-2ubuntu8) ... Setting up mount (2.34-0.1ubuntu5) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up gpgconf (2.2.17-3ubuntu1) ... Setting up libperl5.30:armhf (5.30.0-9) ... Setting up libisl22:armhf (0.22-2) ... Setting up liblockfile1:armhf (1.16-1.1) ... Setting up libjson-c4:armhf (0.13.1+dfsg-6) ... Setting up libbinutils:armhf (2.33.90.20200122-1ubuntu2) ... Setting up libc-dev-bin (2.30-0ubuntu3) ... Setting up openssl (1.1.1d-2ubuntu3) ... Setting up libcc1-0:armhf (9.2.1-25ubuntu1) ... Setting up gpg (2.2.17-3ubuntu1) ... Setting up libkmod2:armhf (26-3ubuntu1) ... Setting up libctf0:armhf (2.33.90.20200122-1ubuntu2) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up e2fsprogs (1.45.3-4ubuntu3) ... Setting up libgcc-9-dev:armhf (9.2.1-25ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-25ubuntu1) ... Setting up libc6-dev:armhf (2.30-0ubuntu3) ... Setting up libcryptsetup12:armhf (2:2.2.2-1ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.33.90.20200122-1ubuntu2) ... Setting up libstdc++-9-dev:armhf (9.2.1-25ubuntu1) ... Setting up systemd (244.1-0ubuntu2) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.33.90.20200122-1ubuntu2) ... Setting up gcc-9 (9.2.1-25ubuntu1) ... Setting up systemd-sysv (244.1-0ubuntu2) ... Setting up g++-9 (9.2.1-25ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18638255 armhf focal-proposed -c chroot:build-PACKAGEBUILD-18638255 --arch=armhf --dist=focal-proposed --nolog fastqtl_2.184+dfsg-7build1.dsc Initiating build PACKAGEBUILD-18638255 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:56:55 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-035.buildd +==============================================================================+ | fastqtl 2.184+dfsg-7build1 (armhf) 31 Jan 2020 21:47 | +==============================================================================+ Package: fastqtl Version: 2.184+dfsg-7build1 Source Version: 2.184+dfsg-7build1 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/fastqtl-iskqzk/fastqtl-2.184+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/fastqtl-iskqzk' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18638255/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fastqtl_2.184+dfsg-7build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-4D3BRl/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-4D3BRl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-4D3BRl/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-4D3BRl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-4D3BRl/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-4D3BRl/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (87.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-4D3BRl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (67.7 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14402 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev Filtered Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libgsl-dev, r-mathlib, zlib1g-dev, libblas-dev, libeigen3-dev, libhts-dev dpkg-deb: building package 'sbuild-build-depends-fastqtl-dummy' in '/<>/resolver-wPUiuL/apt_archive/sbuild-build-depends-fastqtl-dummy.deb'. Ign:1 copy:/<>/resolver-wPUiuL/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wPUiuL/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-wPUiuL/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wPUiuL/apt_archive ./ Sources [272 B] Get:5 copy:/<>/resolver-wPUiuL/apt_archive ./ Packages [593 B] Fetched 2984 B in 0s (90.3 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install fastqtl build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost-iostreams-dev libboost-iostreams1.67-dev libboost-iostreams1.67.0 libboost-program-options-dev libboost-program-options1.67-dev libboost-program-options1.67.0 libboost-regex1.67-dev libboost-regex1.67.0 libboost1.67-dev libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libeigen3-dev libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu-dev libicu63 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db pkg-config po-debconf r-mathlib zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff liblapack-doc libboost-doc libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-contract1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev libeigen3-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user icu-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-base-core r-base-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost-iostreams-dev libboost-iostreams1.67-dev libboost-iostreams1.67.0 libboost-program-options-dev libboost-program-options1.67-dev libboost-program-options1.67.0 libboost-regex1.67-dev libboost-regex1.67.0 libboost1.67-dev libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libeigen3-dev libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts3 libhx509-5-heimdal libicu-dev libicu63 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db pkg-config po-debconf r-mathlib sbuild-build-depends-fastqtl-dummy zlib1g-dev 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 43.4 MB of archives. After this operation, 274 MB of additional disk space will be used. Get:1 copy:/<>/resolver-wPUiuL/apt_archive ./ sbuild-build-depends-fastqtl-dummy 0.invalid.0 [924 B] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libuchardet0 armhf 0.0.6-3 [62.1 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf groff-base armhf 1.22.4-4 [777 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libpipeline1 armhf 1.5.2-2 [23.5 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf man-db armhf 2.9.0-2 [1079 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf file armhf 1:5.38-4 [22.4 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf libglib2.0-0 armhf 2.63.3-3 [1117 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf libicu63 armhf 63.2-2 [8002 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libxml2 armhf 2.9.4+dfsg1-8ubuntu3 [554 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10 [46.2 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5support0 armhf 1.17-6ubuntu3 [28.1 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf libk5crypto3 armhf 1.17-6ubuntu3 [79.5 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libkeyutils1 armhf 1.6-6ubuntu1 [9172 B] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-3 armhf 1.17-6ubuntu3 [287 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi-krb5-2 armhf 1.17-6ubuntu3 [101 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf libpsl5 armhf 0.20.2-2 [48.7 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11.1 [321 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:26 http://ftpmaster.internal/ubuntu focal-proposed/main armhf automake all 1:1.16.1-4ubuntu5 [522 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10 [412 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-11 [194 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libdebhelper-perl all 12.7.3ubuntu1 [52.1 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-1 [90.4 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf 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[34.7 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-1 [140 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libblas3 armhf 3.9.0-1 [102 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libblas-dev armhf 3.9.0-1 [109 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libboost1.67-dev armhf 1.67.0-17ubuntu4 [8363 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libboost-dev armhf 1.67.0.2ubuntu1 [3596 B] Get:48 http://ftpmaster.internal/ubuntu focal/universe armhf libboost-regex1.67.0 armhf 1.67.0-17ubuntu4 [434 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf libicu-dev armhf 63.2-2 [8927 kB] Get:50 http://ftpmaster.internal/ubuntu focal/universe armhf libboost-regex1.67-dev armhf 1.67.0-17ubuntu4 [536 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf libboost-iostreams1.67.0 armhf 1.67.0-17ubuntu4 [221 kB] Get:52 http://ftpmaster.internal/ubuntu focal/universe armhf libboost-iostreams1.67-dev armhf 1.67.0-17ubuntu4 [229 kB] Get:53 http://ftpmaster.internal/ubuntu focal/universe armhf libboost-iostreams-dev armhf 1.67.0.2ubuntu1 [3384 B] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libboost-program-options1.67.0 armhf 1.67.0-17ubuntu4 [312 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libboost-program-options1.67-dev armhf 1.67.0-17ubuntu4 [361 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libboost-program-options-dev armhf 1.67.0.2ubuntu1 [3408 B] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libbrotli1 armhf 1.0.7-6 [268 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-1 [24.4 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-1 [78.5 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libwind0-heimdal armhf 7.7.0+dfsg-1 [46.9 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-1 [88.7 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-1 [170 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-1 [13.2 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-1 [80.0 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2 [13.4 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-2 armhf 2.1.27+dfsg-2 [42.7 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libldap-common all 2.4.48+dfsg-1ubuntu4 [16.9 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf libldap-2.4-2 armhf 2.4.48+dfsg-1ubuntu4 [133 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libnghttp2-14 armhf 1.40.0-1 [68.0 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build1 [49.1 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libssh-4 armhf 0.9.3-2ubuntu1 [147 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libcurl3-gnutls armhf 7.66.0-1ubuntu1 [200 kB] Get:73 http://ftpmaster.internal/ubuntu focal/universe armhf libdeflate0 armhf 1.5-1 [71.4 kB] Get:74 http://ftpmaster.internal/ubuntu focal/universe armhf libgslcblas0 armhf 2.5+dfsg-6 [62.0 kB] Get:75 http://ftpmaster.internal/ubuntu focal/universe armhf libgsl23 armhf 2.5+dfsg-6 [694 kB] Get:76 http://ftpmaster.internal/ubuntu focal/universe armhf libgsl-dev armhf 2.5+dfsg-6 [902 kB] Get:77 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libhts3 armhf 1.10.2-2ubuntu1 [316 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf liblzma-dev armhf 5.2.4-1 [139 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1ubuntu3 [166 kB] Get:80 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libhts-dev armhf 1.10.2-2ubuntu1 [92.1 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf pkg-config armhf 0.29.1-0ubuntu3 [42.2 kB] Get:82 http://ftpmaster.internal/ubuntu focal/universe armhf r-mathlib armhf 3.6.2-2 [1815 kB] Get:83 http://ftpmaster.internal/ubuntu focal/universe armhf libeigen3-dev all 3.3.7-1 [814 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.4 MB in 2s (27.8 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 14402 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_armhf.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.2-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_armhf.deb ... Unpacking man-db (2.9.0-2) ... 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Setting up libboost-program-options1.67.0:armhf (1.67.0-17ubuntu4) ... Setting up libpipeline1:armhf (1.5.2-2) ... Setting up libkeyutils1:armhf (1.6-6ubuntu1) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up libgslcblas0:armhf (2.5+dfsg-6) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libboost-program-options1.67-dev:armhf (1.67.0-17ubuntu4) ... Setting up libglib2.0-0:armhf (2.63.3-3) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.3ubuntu1) ... Setting up libbrotli1:armhf (1.0.7-6) ... Setting up libnghttp2-14:armhf (1.40.0-1) ... Setting up libmagic1:armhf (1:5.38-4) ... Setting up libdeflate0 (1.5-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.48+dfsg-1ubuntu4) ... Setting up libicu63:armhf (63.2-2) ... Setting up libkrb5support0:armhf (1.17-6ubuntu3) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libboost-program-options-dev:armhf (1.67.0.2ubuntu1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libgsl23:armhf (2.5+dfsg-6) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up icu-devtools (63.2-2) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up libboost-iostreams1.67.0:armhf (1.67.0-17ubuntu4) ... Setting up libk5crypto3:armhf (1.17-6ubuntu3) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-1) ... Setting up liblzma-dev:armhf (5.2.4-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up r-mathlib (3.6.2-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:armhf (1.17-6ubuntu3) ... Setting up libboost-dev:armhf (1.67.0.2ubuntu1) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libicu-dev:armhf (63.2-2) ... Setting up libxml2:armhf (2.9.4+dfsg1-8ubuntu3) ... Setting up libblas-dev:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libboost-regex1.67.0:armhf (1.67.0-17ubuntu4) ... Setting up libtool (2.4.6-11) ... Setting up libboost-regex1.67-dev:armhf (1.67.0-17ubuntu4) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:armhf (1.17-6ubuntu3) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libssh-4:armhf (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libboost-iostreams1.67-dev:armhf (1.67.0-17ubuntu4) ... Setting up automake (1:1.16.1-4ubuntu5) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libboost-iostreams-dev:armhf (1.67.0.2ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-1) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libldap-2.4-2:armhf (2.4.48+dfsg-1ubuntu4) ... Setting up libcurl3-gnutls:armhf (7.66.0-1ubuntu1) ... Setting up libhts3:armhf (1.10.2-2ubuntu1) ... Setting up libhts-dev:armhf (1.10.2-2ubuntu1) ... Setting up debhelper (12.7.3ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-fastqtl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-173-generic arm64 (armv7l) Toolchain package versions: binutils_2.33.90.20200122-1ubuntu2 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-25ubuntu1 gcc-9_9.2.1-25ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-25ubuntu1 libstdc++6_9.2.1-25ubuntu1 linux-libc-dev_5.4.0-13.16 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.8 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu5 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.90.20200122-1ubuntu2 binutils-arm-linux-gnueabihf_2.33.90.20200122-1ubuntu2 binutils-common_2.33.90.20200122-1ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu5 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-25ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu3 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu5 file_1:5.38-4 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-25ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-25ubuntu1 gcc-9-base_9.2.1-25ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 icu-devtools_63.2-2 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.8 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-25ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu2 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+------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jan 31 21:45:55 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastqtl_2.184+dfsg-7build1.dsc dpkg-source: info: extracting fastqtl in fastqtl-2.184+dfsg dpkg-source: info: unpacking fastqtl_2.184+dfsg.orig.tar.xz dpkg-source: info: unpacking fastqtl_2.184+dfsg-7build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile_dynamic_hardenings.patch dpkg-source: info: applying 02_Replace_libtabix_by_libhts.patch dpkg-source: info: applying 03_Reproducible_builds.patch dpkg-source: info: applying cross.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18638255 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18638255 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18638255 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fastqtl dpkg-buildpackage: info: source version 2.184+dfsg-7build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>/fastqtl-2.184+dfsg' rm -f obj/*.o bin/fastQTL make[1]: Leaving directory '/<>/fastqtl-2.184+dfsg' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>/fastqtl-2.184+dfsg' mkdir -p /<>/fastqtl-2.184+dfsg/obj/ mkdir -p /<>/fastqtl-2.184+dfsg/bin/ dh_auto_build -- CXXFLAGS='-g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' make -j4 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" make[2]: Entering directory '/<>/fastqtl-2.184+dfsg' g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisMapping.o -c src/analysisMapping.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisNominal.o -c src/analysisNominal.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutation.o -c src/analysisPermutation.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationInteraction.o -c src/analysisPermutationInteraction.cpp -Isrc In file included from src/analysisNominal.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutation.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationInteraction.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisMapping.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationPerGroup.o -c src/analysisPermutationPerGroup.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/analysisPermutationSequence.o -c src/analysisPermutationSequence.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/commands.o -c src/commands.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/df.o -c src/df.cpp -Isrc In file included from src/analysisPermutationPerGroup.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ In file included from src/analysisPermutationSequence.cpp:17: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/fastQTL.o -c src/fastQTL.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/management.o -c src/management.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/mle.o -c src/mle.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readCovariates.o -c src/readCovariates.cpp -Isrc In file included from src/management.cpp:20: src/data.h: In member function ‘double data::getCorrelation(std::vector&, std::vector&)’: src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 170 | case 3: sum0 += vec1[i+2] * vec2[i+2]; src/data.h:171:2: note: here 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; | ^~~~ src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 171 | case 2: sum0 += vec1[i+1] * vec2[i+1]; src/data.h:172:2: note: here 172 | case 1: sum0 += vec1[i+0] * vec2[i+0]; | ^~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGenotypes.o -c src/readGenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readGroups.o -c src/readGroups.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInclusionsExclusions.o -c src/readInclusionsExclusions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readInteractions.o -c src/readInteractions.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readPhenotypes.o -c src/readPhenotypes.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/readThresholds.o -c src/readThresholds.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/residualizer.o -c src/residualizer.cpp -Isrc g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/tabix.o -c src/utils/tabix.cpp -Isrc src/utils/tabix.cpp: In constructor ‘Tabix::Tabix(std::string&)’: src/utils/tabix.cpp:17:32: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:264:9: note: declared here 264 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ src/utils/tabix.cpp:17:32: warning: ‘int bgzf_is_bgzf(const char*)’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations] 17 | if ( bgzf_is_bgzf(cfilename)!=1 ) | ^ In file included from src/utils/tabix.hpp:12, from src/utils/tabix.cpp:6: /usr/include/htslib/bgzf.h:264:9: note: declared here 264 | int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead"); | ^~~~~~~~~~~~ g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -g -fdebug-prefix-map=/<>/fastqtl-2.184+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o obj/utils.o -c src/utils/utils.cpp -Isrc g++ -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now obj/analysisMapping.o obj/analysisNominal.o obj/analysisPermutation.o obj/analysisPermutationInteraction.o obj/analysisPermutationPerGroup.o obj/analysisPermutationSequence.o obj/commands.o obj/df.o obj/fastQTL.o obj/management.o obj/mle.o obj/readCovariates.o obj/readGenotypes.o obj/readGroups.o obj/readInclusionsExclusions.o obj/readInteractions.o obj/readPhenotypes.o obj/readThresholds.o obj/residualizer.o obj/tabix.o obj/utils.o -lRmath -lhts -lm -lz -lboost_iostreams -lboost_program_options -lgsl -lblas -o bin/fastQTL make[2]: Leaving directory '/<>/fastqtl-2.184+dfsg' cd /<>/fastqtl-2.184+dfsg/example/ && \ tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s --owner=root --group=root --numeric-owner covariates.txt.gz genotypes.vcf.gz genotypes.vcf.gz.tbi interaction.txt phenotypes.bed.gz phenotypes.bed.gz.tbi make[1]: Leaving directory '/<>/fastqtl-2.184+dfsg' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/fastqtl/usr/bin/fastQTL contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/fastqtl/usr/bin/fastQTL was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing fastqtl (in debian/fastqtl); do_strip: , oemstrip: pkgstriptranslations: processing fastqtl-dbgsym (in debian/.debhelper/fastqtl/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastqtl/DEBIAN/control, package fastqtl, directory debian/fastqtl pkgstripfiles: processing control file: debian/.debhelper/fastqtl/dbgsym-root/DEBIAN/control, package fastqtl-dbgsym, directory debian/.debhelper/fastqtl/dbgsym-root dpkg-deb: building package 'fastqtl-dbgsym' in 'debian/.debhelper/scratch-space/build-fastqtl/fastqtl-dbgsym_2.184+dfsg-7build1_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package fastqtl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fastqtl' in '../fastqtl_2.184+dfsg-7build1_armhf.deb'. Renaming fastqtl-dbgsym_2.184+dfsg-7build1_armhf.deb to fastqtl-dbgsym_2.184+dfsg-7build1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../fastqtl_2.184+dfsg-7build1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200131-2150 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fastqtl_2.184+dfsg-7build1_armhf.changes: ----------------------------------------- Format: 1.8 Date: Fri, 31 Jan 2020 22:42:02 +0100 Source: fastqtl Binary: fastqtl Architecture: armhf Version: 2.184+dfsg-7build1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: fastqtl - Quantitative Trait Loci (QTL) mapper in cis for molecular phenoty Changes: fastqtl (2.184+dfsg-7build1) focal; urgency=medium . * No-change upload for libhts soname change. Checksums-Sha1: e2284d9e51220352c6d8e8674c4f029af69818d3 4847044 fastqtl-dbgsym_2.184+dfsg-7build1_armhf.ddeb 165d195e87a89aa50af50e4746fd2bd38a83192f 7057 fastqtl_2.184+dfsg-7build1_armhf.buildinfo 72e4f921bfba9d38adcca6764141e0d9c2214d52 171884 fastqtl_2.184+dfsg-7build1_armhf.deb Checksums-Sha256: 5f59381b5518bfe84e7689189020b8d33ee190db48786c03a2f8ae4789ba8c48 4847044 fastqtl-dbgsym_2.184+dfsg-7build1_armhf.ddeb e760de765ae72ce3231b11ea1d812807889172407c24c1a6e003236e366c7768 7057 fastqtl_2.184+dfsg-7build1_armhf.buildinfo ad6adf0e7f45794558f1473ccc4f4804caf8ccb795737c06acb332a91ad80f05 171884 fastqtl_2.184+dfsg-7build1_armhf.deb Files: dbc8e654c2bd1591899817470a098014 4847044 debug optional fastqtl-dbgsym_2.184+dfsg-7build1_armhf.ddeb 1eff9c6e438a57e95b65c69a734b61b0 7057 science optional fastqtl_2.184+dfsg-7build1_armhf.buildinfo b6fe3eff4a1e6c277df09a658a9929ed 171884 science optional fastqtl_2.184+dfsg-7build1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fastqtl_2.184+dfsg-7build1_armhf.deb ------------------------------------ new debian package, version 2.0. size 171884 bytes: control archive=1124 bytes. 1144 bytes, 20 lines control 328 bytes, 5 lines md5sums Package: fastqtl Version: 2.184+dfsg-7build1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 451 Depends: libblas3 | libblas.so.3, libboost-iostreams1.67.0, libboost-program-options1.67.0, libc6 (>= 2.29), libgcc1 (>= 1:3.5), libgsl23 (>= 2.5), libhts3 (>= 1.10), libstdc++6 (>= 9), r-mathlib Suggests: fastqtl-doc Section: science Priority: optional Homepage: http://fastqtl.sourceforge.net/ Description: Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels. drwxr-xr-x root/root 0 2020-01-31 21:42 ./ drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/ drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/bin/ -rwxr-xr-x root/root 407056 2020-01-31 21:42 ./usr/bin/fastQTL drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/share/ drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/share/doc/fastqtl/ -rw-r--r-- root/root 974 2020-01-31 21:42 ./usr/share/doc/fastqtl/changelog.Debian.gz -rw-r--r-- root/root 38452 2019-09-09 12:08 ./usr/share/doc/fastqtl/copyright drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 190 2019-09-09 12:08 ./usr/share/lintian/overrides/fastqtl drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/share/man/ drwxr-xr-x root/root 0 2020-01-31 21:42 ./usr/share/man/man1/ -rw-r--r-- root/root 1573 2020-01-31 21:42 ./usr/share/man/man1/fastQTL.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 107940 Build-Time: 155 Distribution: focal-proposed Host Architecture: armhf Install-Time: 31 Job: fastqtl_2.184+dfsg-7build1.dsc Machine Architecture: arm64 Package: fastqtl Package-Time: 189 Source-Version: 2.184+dfsg-7build1 Space: 107940 Status: successful Version: 2.184+dfsg-7build1 -------------------------------------------------------------------------------- Finished at 20200131-2150 Build needed 00:03:09, 107940k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18638255 Scanning for processes to kill in build PACKAGEBUILD-18638255