Ubuntu
fasttree package

fasttree 2.1.11-1 source package in Ubuntu

Changelog

fasttree (2.1.11-1) unstable; urgency=medium

  [ Jelmer Vernooij ]
  * Trim trailing whitespace.

  [ Andreas Tille ]
  * New upstream version
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * Remove trailing whitespace in debian/rules

 -- Andreas Tille <email address hidden>  Wed, 31 Jul 2019 15:43:36 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release universe science

Downloads

File Size SHA-256 Checksum
fasttree_2.1.11-1.dsc 2.0 KiB 2c20f5fd6cc2d5860ad62f4bfd72edd0fe0bc89801b65af0dced4e285701cac9
fasttree_2.1.11.orig.tar.xz 93.8 KiB 7f15713f02afb167f4f33dc067b5b2282b219b22fbaa17eb8f771a7147a05a5c
fasttree_2.1.11-1.debian.tar.xz 32.9 KiB 853dd529e9f65eaf49445e93eb2b59aa1039e7e563c0132e07851a4f5a96c353

Available diffs

No changes file available.

Binary packages built by this source

fasttree: phylogenetic trees from alignments of nucleotide or protein sequences

 FastTree infers approximately-maximum-likelihood phylogenetic trees from
 alignments of nucleotide or protein sequences. It handles alignments
 with up to a million of sequences in a reasonable amount of time and
 memory. For large alignments, FastTree is 100-1,000 times faster than
 PhyML 3.0 or RAxML 7.
 .
 FastTree is more accurate than PhyML 3 with default settings, and much
 more accurate than the distance-matrix methods that are traditionally
 used for large alignments. FastTree uses the Jukes-Cantor or generalized
 time-reversible (GTR) models of nucleotide evolution and the JTT
 (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account
 for the varying rates of evolution across sites, FastTree uses a single
 rate for each site (the "CAT" approximation). To quickly estimate the
 reliability of each split in the tree, FastTree computes local support
 values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's
 "SH-like local supports").
 .
 This package contains a single threaded version (fasttree) and a
 parallel version which uses OpenMP (fasttreMP).

fasttree-dbgsym: debug symbols for fasttree