RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'e8fd624de1dfad73bae06f0578741fb37f28461e', '/home/buildd/filecache-default/2af6ad3f555bc94a51b874225678a8670faeb5a0'] Synching the system clock with the buildd NTP service... 8 Dec 22:41:18 ntpdate[28403]: adjust time server 10.211.37.1 offset -0.000404 sec Unpacking chroot for build e8fd624de1dfad73bae06f0578741fb37f28461e RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'e8fd624de1dfad73bae06f0578741fb37f28461e'] Mounting chroot for build e8fd624de1dfad73bae06f0578741fb37f28461e RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'e8fd624de1dfad73bae06f0578741fb37f28461e', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-e8fd624de1dfad73bae06f0578741fb37f28461e RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'e8fd624de1dfad73bae06f0578741fb37f28461e', 'armhf'] Updating debian chroot for build e8fd624de1dfad73bae06f0578741fb37f28461e Ign http://archive-team.internal precise InRelease Ign http://ftpmaster.internal precise InRelease Ign http://archive-team.internal precise Release.gpg Get:1 http://archive-team.internal precise Release [752 B] Get:2 http://ftpmaster.internal precise Release.gpg [198 B] Get:3 http://ftpmaster.internal precise Release [49.6 kB] Ign http://archive-team.internal precise/main TranslationIndex Get:4 http://archive-team.internal precise/main armhf Packages [1696 kB] Get:5 http://ftpmaster.internal precise/main armhf Packages [1239 kB] Get:6 http://ftpmaster.internal precise/universe armhf Packages [3436 kB] Ign http://archive-team.internal precise/main Translation-en Get:7 http://ftpmaster.internal precise/main TranslationIndex [3502 B] Get:8 http://ftpmaster.internal precise/universe TranslationIndex [2712 B] Get:9 http://ftpmaster.internal precise/main Translation-en [711 kB] Get:10 http://ftpmaster.internal precise/universe Translation-en [3291 kB] Fetched 10.4 MB in 24s (434 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: libglib2.0-0 linux-libc-dev 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1797 kB of archives. After this operation, 76.8 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libglib2.0-0 linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-0 armhf 2.31.2-0ubuntu2 [982 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev armhf 3.2.0-3.9 [814 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1797 kB in 0s (3568 kB/s) (Reading database ... 11535 files and directories currently installed.) Preparing to replace libglib2.0-0 2.30.1-2ubuntu1 (using .../libglib2.0-0_2.31.2-0ubuntu2_armhf.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace linux-libc-dev 3.2.0-3.8 (using .../linux-libc-dev_3.2.0-3.9_armhf.deb) ... Unpacking replacement linux-libc-dev ... Setting up libglib2.0-0 (2.31.2-0ubuntu2) ... Setting up linux-libc-dev (3.2.0-3.9) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'e8fd624de1dfad73bae06f0578741fb37f28461e', 'armhf', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=armhf', '--comp=universe', 'fastx-toolkit_0.0.13.1-1.dsc'] Initiating build e8fd624de1dfad73bae06f0578741fb37f28461e with 2 processor cores. Automatic build of fastx-toolkit_0.0.13.1-1 on meissa by sbuild/armhf 1.170.5 Build started at 20111208-2243 ****************************************************************************** fastx-toolkit_0.0.13.1-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 8), autotools-dev, pkg-config, libgtextutils-dev Checking for already installed source dependencies... cdbs: missing debhelper: missing autotools-dev: missing pkg-config: missing libgtextutils-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper autotools-dev pkg-config libgtextutils-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake bsdmainutils ca-certificates dh-translations file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libdb4.8 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0 libgtextutils0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpopt0 libsqlite3-0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase openssl po-debconf python python-scour python2.7 Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc Recommended packages: curl wget lynx-cur libio-socket-inet6-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates cdbs debhelper dh-translations file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libdb4.8 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0 libgtextutils-dev libgtextutils0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpopt0 libsqlite3-0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase openssl pkg-config po-debconf python python-scour python2.7 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 12.4 MB of archives. After this operation, 36.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libdb4.8 libexpat1 libpopt0 libsqlite3-0 libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libmagic1 file mime-support netbase python2.7 python bsdmainutils openssl ca-certificates gettext-base groff-base man-db m4 autoconf autotools-dev automake html2text gettext intltool-debian po-debconf debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-http-perl libnet-ssleay-perl libio-socket-ssl-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations python-scour cdbs libgtextutils0 libgtextutils-dev pkg-config Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libdb4.8 armhf 4.8.30-10 [576 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 armhf 2.0.1-7.2 [102 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 armhf 1.16-1ubuntu1 [26.1 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libsqlite3-0 armhf 3.7.9-2ubuntu1 [282 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 armhf 1.2.0-5 [20.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libxml2 armhf 2.7.8.dfsg-5ubuntu1 [550 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 armhf 0.6.2-2 [80.9 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 armhf 0.9.3-5 [393 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 armhf 0.18.1.1-5ubuntu3 [99.4 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 armhf 5.09-2 [213 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main file armhf 5.09-2 [19.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main netbase all 4.46ubuntu1 [14.8 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main python2.7 armhf 2.7.2-8build1 [2516 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main python all 2.7.2-9ubuntu1 [168 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils armhf 8.2.3 [193 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main openssl armhf 1.0.0e-2ubuntu4 [506 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main ca-certificates armhf 20110502+nmu1ubuntu5 [164 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main gettext-base armhf 0.18.1.1-5ubuntu3 [54.7 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main groff-base armhf 1.21-6 [926 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main man-db armhf 2.6.0.2-3 [673 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main m4 armhf 1.4.16-2ubuntu1 [182 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main autoconf armhf 2.68-1ubuntu2 [560 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20110511.1 [44.7 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main automake armhf 1:1.11.1-1ubuntu2 [544 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main html2text armhf 1.3.2a-15 [85.8 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main gettext armhf 0.18.1.1-5ubuntu3 [1050 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main po-debconf armhf 1.0.16+nmu1ubuntu1 [211 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main debhelper armhf 8.9.9ubuntu1 [477 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main liburi-perl all 1.59-1 [90.3 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libencode-locale-perl all 1.02-2 [12.0 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libhttp-date-perl all 6.00-1 [10.1 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libfile-listing-perl all 6.03-1 [9690 B] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libhtml-parser-perl armhf 3.69-1build1 [95.8 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tree-perl all 4.2-1 [205 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main liblwp-mediatypes-perl all 6.01-1 [17.5 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libhttp-message-perl all 6.01-1 [77.6 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libnet-http-perl all 6.01-1 [20.5 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main libnet-ssleay-perl armhf 1.42-1build1 [174 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libio-socket-ssl-perl all 1.49-1 [47.5 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main liblwp-protocol-https-perl all 6.02-1 [6746 B] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libwww-perl all 6.03-1 [156 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libxml-parser-perl armhf 2.41-1build1 [302 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main intltool all 0.50.0-0ubuntu2 [101 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main dh-translations all 109 [20.9 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main python-scour all 0.26-2 [46.3 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main cdbs all 0.4.99ubuntu1 [48.9 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/universe libgtextutils0 armhf 0.6.2-1 [20.1 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/universe libgtextutils-dev armhf 0.6.2-1 [25.5 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main pkg-config armhf 0.26-1ubuntu1 [37.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.4 MB in 3s (3643 kB/s) Selecting previously unselected package libdb4.8. (Reading database ... 11535 files and directories currently installed.) Unpacking libdb4.8 (from .../libdb4.8_4.8.30-10_armhf.deb) ... Selecting previously unselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_armhf.deb) ... Selecting previously unselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.16-1ubuntu1_armhf.deb) ... Selecting previously unselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.9-2ubuntu1_armhf.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_armhf.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5ubuntu1_armhf.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_armhf.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_armhf.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_armhf.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.51-1ubuntu1_all.deb) ... Selecting previously unselected package netbase. Unpacking netbase (from .../netbase_4.46ubuntu1_all.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.2-8build1_armhf.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.2-9ubuntu1_all.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armhf.deb) ... Selecting previously unselected package openssl. Unpacking openssl (from .../openssl_1.0.0e-2ubuntu4_armhf.deb) ... Selecting previously unselected package ca-certificates. Unpacking ca-certificates (from .../ca-certificates_20110502+nmu1ubuntu5_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_armhf.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../m4_1.4.16-2ubuntu1_armhf.deb) ... Selecting previously unselected package autoconf. Unpacking autoconf (from .../autoconf_2.68-1ubuntu2_armhf.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20110511.1_all.deb) ... Selecting previously unselected package automake. Unpacking automake (from .../automake_1%3a1.11.1-1ubuntu2_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1ubuntu1_armhf.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.9ubuntu1_armhf.deb) ... Selecting previously unselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.59-1_all.deb) ... Selecting previously unselected package libencode-locale-perl. Unpacking libencode-locale-perl (from .../libencode-locale-perl_1.02-2_all.deb) ... Selecting previously unselected package libhttp-date-perl. Unpacking libhttp-date-perl (from .../libhttp-date-perl_6.00-1_all.deb) ... Selecting previously unselected package libfile-listing-perl. Unpacking libfile-listing-perl (from .../libfile-listing-perl_6.03-1_all.deb) ... Selecting previously unselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously unselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.69-1build1_armhf.deb) ... Selecting previously unselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_4.2-1_all.deb) ... Selecting previously unselected package liblwp-mediatypes-perl. Unpacking liblwp-mediatypes-perl (from .../liblwp-mediatypes-perl_6.01-1_all.deb) ... Selecting previously unselected package libhttp-message-perl. Unpacking libhttp-message-perl (from .../libhttp-message-perl_6.01-1_all.deb) ... Selecting previously unselected package libhttp-cookies-perl. Unpacking libhttp-cookies-perl (from .../libhttp-cookies-perl_6.00-2_all.deb) ... Selecting previously unselected package libhttp-negotiate-perl. Unpacking libhttp-negotiate-perl (from .../libhttp-negotiate-perl_6.00-2_all.deb) ... Selecting previously unselected package libnet-http-perl. Unpacking libnet-http-perl (from .../libnet-http-perl_6.01-1_all.deb) ... Selecting previously unselected package libnet-ssleay-perl. Unpacking libnet-ssleay-perl (from .../libnet-ssleay-perl_1.42-1build1_armhf.deb) ... Selecting previously unselected package libio-socket-ssl-perl. Unpacking libio-socket-ssl-perl (from .../libio-socket-ssl-perl_1.49-1_all.deb) ... Selecting previously unselected package liblwp-protocol-https-perl. Unpacking liblwp-protocol-https-perl (from .../liblwp-protocol-https-perl_6.02-1_all.deb) ... Selecting previously unselected package libwww-robotrules-perl. Unpacking libwww-robotrules-perl (from .../libwww-robotrules-perl_6.01-1_all.deb) ... Selecting previously unselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_6.03-1_all.deb) ... Selecting previously unselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.41-1build1_armhf.deb) ... Selecting previously unselected package intltool. Unpacking intltool (from .../intltool_0.50.0-0ubuntu2_all.deb) ... Selecting previously unselected package dh-translations. Unpacking dh-translations (from .../dh-translations_109_all.deb) ... Selecting previously unselected package python-scour. Unpacking python-scour (from .../python-scour_0.26-2_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.99ubuntu1_all.deb) ... Selecting previously unselected package libgtextutils0. Unpacking libgtextutils0 (from .../libgtextutils0_0.6.2-1_armhf.deb) ... Selecting previously unselected package libgtextutils-dev. Unpacking libgtextutils-dev (from .../libgtextutils-dev_0.6.2-1_armhf.deb) ... Selecting previously unselected package pkg-config. Unpacking pkg-config (from .../pkg-config_0.26-1ubuntu1_armhf.deb) ... Setting up libdb4.8 (4.8.30-10) ... Setting up libexpat1 (2.0.1-7.2) ... Setting up libpopt0 (1.16-1ubuntu1) ... Setting up libsqlite3-0 (3.7.9-2ubuntu1) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxml2 (2.7.8.dfsg-5ubuntu1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up netbase (4.46ubuntu1) ... Setting up python2.7 (2.7.2-8build1) ... Setting up python (2.7.2-9ubuntu1) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up openssl (1.0.0e-2ubuntu4) ... Setting up ca-certificates (20110502+nmu1ubuntu5) ... Updating certificates in /etc/ssl/certs... WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem 156 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up m4 (1.4.16-2ubuntu1) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20110511.1) ... Setting up automake (1:1.11.1-1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1ubuntu1) ... Setting up debhelper (8.9.9ubuntu1) ... Setting up liburi-perl (1.59-1) ... Setting up libencode-locale-perl (1.02-2) ... Setting up libhttp-date-perl (6.00-1) ... Setting up libfile-listing-perl (6.03-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-1build1) ... Setting up libhtml-tree-perl (4.2-1) ... Setting up liblwp-mediatypes-perl (6.01-1) ... Setting up libhttp-message-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-http-perl (6.01-1) ... Setting up libnet-ssleay-perl (1.42-1build1) ... Setting up libio-socket-ssl-perl (1.49-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-2) ... Setting up libgtextutils0 (0.6.2-1) ... Setting up libgtextutils-dev (0.6.2-1) ... Setting up pkg-config (0.26-1ubuntu1) ... Setting up liblwp-protocol-https-perl (6.02-1) ... Setting up libwww-perl (6.03-1) ... Setting up libxml-parser-perl (2.41-1build1) ... Setting up intltool (0.50.0-0ubuntu2) ... Setting up dh-translations (109) ... Setting up cdbs (0.4.99ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu3 gcc-4.6_4.6.2-5ubuntu1 g++-4.6_4.6.2-5ubuntu1 binutils_2.22-1ubuntu1 libstdc++6-4.6-dev_4.6.2-5ubuntu1 libstdc++6_4.6.2-5ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Fri Jul 8 04:45:07 2011 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.13.1-1.dsc dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.13.1 dpkg-source: info: unpacking fastx-toolkit_0.0.13.1.orig.tar.bz2 dpkg-source: info: unpacking fastx-toolkit_0.0.13.1-1.debian.tar.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package fastx-toolkit dpkg-buildpackage: source version 0.0.13.1-1 dpkg-source --before-build fastx-toolkit-0.0.13.1 dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-autotools rmdir --ignore-fail-on-non-empty . rmdir: failed to remove `.': Invalid argument make: [makefile-clean] Error 1 (ignored) for i in ./config/config.guess ./config/config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean rm -f debian/stamp-autotools-files debian/rules build test -x debian/rules mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config/config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config/config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/buildd/fastx-toolkit-0.0.13.1/./configure mkdir -p . cd . && CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" /build/buildd/fastx-toolkit-0.0.13.1/./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/fastx-toolkit" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) none checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long int... yes checking for ISO C++ TR1 include files... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTEXTUTILS... yes configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/libfastx/Makefile config.status: creating src/fastx_clipper/Makefile config.status: creating src/fastq_to_fasta/Makefile config.status: creating src/fastx_quality_stats/Makefile config.status: creating src/fastq_quality_converter/Makefile config.status: creating src/fastx_trimmer/Makefile config.status: creating src/fastq_quality_filter/Makefile config.status: creating src/fastq_quality_trimmer/Makefile config.status: creating src/fastx_artifacts_filter/Makefile config.status: creating src/fastx_reverse_complement/Makefile config.status: creating src/fastx_collapser/Makefile config.status: creating src/fastx_uncollapser/Makefile config.status: creating src/seqalign_test/Makefile config.status: creating src/fasta_formatter/Makefile config.status: creating src/fasta_nucleotide_changer/Makefile config.status: creating src/fastx_renamer/Makefile config.status: creating src/fastq_masker/Makefile config.status: creating galaxy/Makefile config.status: creating galaxy/tools/Makefile config.status: creating galaxy/tools/fastx_toolkit/Makefile config.status: creating galaxy/tools/cshl_custom_fastx_toolkit/Makefile config.status: creating galaxy/test-data/Makefile config.status: creating galaxy/static/Makefile config.status: creating galaxy/static/fastx_icons/Makefile config.status: creating galaxy/tool-data/Makefile config.status: creating scripts/Makefile config.status: creating build_scripts/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules touch debian/stamp-autotools /usr/bin/make -C . make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1' /usr/bin/make all-recursive make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1' Making all in m4 make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/m4' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/m4' Making all in src make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src' Making all in libfastx make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/libfastx' gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c chomp.c gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx.c gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_args.c g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp rm -f libfastx.a ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o ranlib libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/libfastx' Making all in fastx_clipper make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_clipper' g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_clipper' Making all in fastx_trimmer make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_trimmer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_trimmer' Making all in fastx_quality_stats make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_quality_stats' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_quality_stats.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_quality_stats' Making all in fastq_quality_converter make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_converter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_converter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_converter' Making all in fastq_to_fasta make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_to_fasta' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_to_fasta.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_to_fasta' Making all in fastq_quality_filter make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_filter' Making all in fastq_quality_trimmer make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastq_quality_trimmer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_trimmer' Making all in fastx_artifacts_filter make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_artifacts_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_artifacts_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_artifacts_filter' Making all in fastx_reverse_complement make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_reverse_complement' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_reverse_complement.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_reverse_complement' Making all in fastx_collapser make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_collapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_collapser' Making all in fastx_uncollapser make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_uncollapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../libfastx -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp /bin/bash 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`/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_uncollapser' Making all in seqalign_test make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/seqalign_test' g++ -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 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-Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_formatter' Making all in fasta_nucleotide_changer make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_nucleotide_changer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fasta_nucleotide_changer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat 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`/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_renamer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c fastx_renamer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector 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make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/cshl_custom_fastx_toolkit' make[5]: Nothing to be done for `all'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/cshl_custom_fastx_toolkit' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' Making all in test-data make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/test-data' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/test-data' Making all in static make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' Making all in fastx_icons make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static/fastx_icons' make[5]: Nothing to be done for `all'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static/fastx_icons' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' Making all in tool-data make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tool-data' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tool-data' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' Making all in scripts make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/scripts' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/scripts' Making all in build_scripts make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/build_scripts' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/build_scripts' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1' make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config/config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config/config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . install DESTDIR=/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit/ make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1' Making install in m4 make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/m4' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/m4' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/share/aclocal" /usr/bin/install -c -m 644 'ax_c_long_long.m4' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/share/aclocal/ax_c_long_long.m4' /usr/bin/install -c -m 644 'ax_cxx_header_stdcxx_tr1.m4' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/share/aclocal/ax_cxx_header_stdcxx_tr1.m4' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/m4' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/m4' Making install in src make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src' Making install in libfastx make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/libfastx' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/libfastx' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/libfastx' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/libfastx' Making install in fastx_clipper make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_clipper' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_clipper' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_clipper' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_clipper' libtool: install: /usr/bin/install -c fastx_clipper /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_clipper make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_clipper' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_clipper' Making install in fastx_trimmer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_trimmer' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_trimmer' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_trimmer' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_trimmer' libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_trimmer make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_trimmer' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_trimmer' Making install in fastx_quality_stats make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_quality_stats' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_quality_stats' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_quality_stats' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_quality_stats' libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_quality_stats make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_quality_stats' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_quality_stats' Making install in fastq_quality_converter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_converter' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_converter' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_converter' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_quality_converter' libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_quality_converter make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_converter' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_converter' Making install in fastq_to_fasta make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_to_fasta' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_to_fasta' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_to_fasta' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_to_fasta' libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_to_fasta make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_to_fasta' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_to_fasta' Making install in fastq_quality_filter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_filter' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_filter' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_filter' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_quality_filter' libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_quality_filter make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_filter' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_filter' Making install in fastq_quality_trimmer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_trimmer' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_trimmer' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_quality_trimmer' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_quality_trimmer' libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_quality_trimmer make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_trimmer' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_quality_trimmer' Making install in fastx_artifacts_filter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_artifacts_filter' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_artifacts_filter' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_artifacts_filter' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_artifacts_filter' libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_artifacts_filter make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_artifacts_filter' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_artifacts_filter' Making install in fastx_reverse_complement make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_reverse_complement' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_reverse_complement' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_reverse_complement' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_reverse_complement' libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_reverse_complement make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_reverse_complement' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_reverse_complement' Making install in fastx_collapser make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_collapser' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_collapser' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_collapser' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_collapser' libtool: install: /usr/bin/install -c fastx_collapser /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_collapser make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_collapser' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_collapser' Making install in fastx_uncollapser make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_uncollapser' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_uncollapser' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_uncollapser' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_uncollapser' libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_uncollapser make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_uncollapser' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_uncollapser' Making install in seqalign_test make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/seqalign_test' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/seqalign_test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/seqalign_test' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/seqalign_test' Making install in fasta_formatter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_formatter' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_formatter' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fasta_formatter' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fasta_formatter' libtool: install: /usr/bin/install -c fasta_formatter /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fasta_formatter make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_formatter' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_formatter' Making install in fasta_nucleotide_changer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_nucleotide_changer' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_nucleotide_changer' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fasta_nucleotide_changer' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fasta_nucleotide_changer' libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fasta_nucleotide_changer make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_nucleotide_changer' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fasta_nucleotide_changer' Making install in fastx_renamer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_renamer' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_renamer' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastx_renamer' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_renamer' libtool: install: /usr/bin/install -c fastx_renamer /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_renamer make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_renamer' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastx_renamer' Making install in fastq_masker make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_masker' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_masker' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fastq_masker' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_masker' libtool: install: /usr/bin/install -c fastq_masker /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_masker make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_masker' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src/fastq_masker' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/src' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/src' Making install in doc make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/doc' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/doc' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/doc' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/doc' Making install in galaxy make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' Making install in tools make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' Making install in fastx_toolkit make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/fastx_toolkit' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/fastx_toolkit' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/fastx_toolkit' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/fastx_toolkit' Making install in cshl_custom_fastx_toolkit make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/cshl_custom_fastx_toolkit' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/cshl_custom_fastx_toolkit' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/cshl_custom_fastx_toolkit' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools/cshl_custom_fastx_toolkit' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tools' Making install in test-data make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/test-data' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/test-data' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/test-data' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/test-data' Making install in static make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' Making install in fastx_icons make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static/fastx_icons' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static/fastx_icons' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static/fastx_icons' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static/fastx_icons' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/static' Making install in tool-data make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tool-data' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tool-data' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tool-data' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy/tool-data' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/galaxy' Making install in scripts make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/scripts' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/scripts' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin" /usr/bin/install -c 'fastx_barcode_splitter.pl' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_barcode_splitter.pl' /usr/bin/install -c 'fastx_nucleotide_distribution_graph.sh' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_nucleotide_distribution_graph.sh' /usr/bin/install -c 'fastx_nucleotide_distribution_line_graph.sh' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastx_nucleotide_distribution_line_graph.sh' /usr/bin/install -c 'fastq_quality_boxplot_graph.sh' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fastq_quality_boxplot_graph.sh' /usr/bin/install -c 'fasta_clipping_histogram.pl' '/build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit//usr/bin/fasta_clipping_histogram.pl' make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/scripts' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/scripts' Making install in build_scripts make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/build_scripts' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1/build_scripts' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/build_scripts' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1/build_scripts' make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.13.1' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1' make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.13.1' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/fastx-toolkit.substvars dh_installdirs -pfastx-toolkit rm --recursive /build/buildd/fastx-toolkit-0.0.13.1/debian/fastx-toolkit/usr/share/aclocal dh_installdocs -pfastx-toolkit ./README ./NEWS ./AUTHORS ./THANKS dh_installexamples -pfastx-toolkit dh_installman -pfastx-toolkit dh_installinfo -pfastx-toolkit dh_installmenu -pfastx-toolkit dh_installcron -pfastx-toolkit dh_installinit -pfastx-toolkit dh_installdebconf -pfastx-toolkit dh_installemacsen -pfastx-toolkit dh_installcatalogs -pfastx-toolkit dh_installpam -pfastx-toolkit dh_installlogrotate -pfastx-toolkit dh_installlogcheck -pfastx-toolkit dh_installchangelogs -pfastx-toolkit NEWS dh_installudev -pfastx-toolkit dh_lintian -pfastx-toolkit dh_bugfiles -pfastx-toolkit dh_install -pfastx-toolkit dh_link -pfastx-toolkit dh_installmime -pfastx-toolkit dh_installgsettings -pfastx-toolkit dh_strip -pfastx-toolkit dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: fastx-toolkit dh_strip debug symbol extraction: packages to act on: fastx-toolkit dh_strip debug symbol extraction: ignored packages: dpkg-deb: building package `fastx-toolkit-dbgsym' in `../fastx-toolkit-dbgsym_0.0.13.1-1_armhf.ddeb'. dh_compress -pfastx-toolkit dh_fixperms -pfastx-toolkit dh_makeshlibs -pfastx-toolkit dh_installdeb -pfastx-toolkit dh_perl -pfastx-toolkit dh_shlibdeps -pfastx-toolkit dpkg-shlibdeps: warning: debian/fastx-toolkit/usr/bin/fastx_uncollapser contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dpkg-shlibdeps: warning: debian/fastx-toolkit/usr/bin/fasta_formatter contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dh_gencontrol -pfastx-toolkit dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends} # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pfastx-toolkit ; fi dh_md5sums -pfastx-toolkit dh_builddeb -pfastx-toolkit INFO: pkgstriptranslations version 109 pkgstriptranslations: processing fastx-toolkit (in debian/fastx-toolkit); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastx-toolkit/DEBIAN/control, package fastx-toolkit, directory debian/fastx-toolkit .. removing usr/share/doc/fastx-toolkit/changelog.gz dpkg-deb: warning: 'debian/fastx-toolkit/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.13.1-1_armhf.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../fastx-toolkit_0.0.13.1-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build fastx-toolkit-0.0.13.1 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111208-2246 Publishing debug debs. chroot-autobuild/build/buildd/fastx-toolkit_0.0.13.1-1_armhf.deb: new debian package, version 2.0. size 100696 bytes: control archive= 1643 bytes. 1118 bytes, 20 lines control 1723 bytes, 26 lines md5sums Package: fastx-toolkit Version: 0.0.13.1-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 348 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgtextutils0 (>= 0.6.2), libstdc++6 (>= 4.6) Section: science Priority: optional Homepage: http://hannonlab.cshl.edu/fastx_toolkit/ Description: FASTQ/A short nucleotide reads pre-processing tools The FASTX-Toolkit is a collection of command line tools for preprocessing short nucleotide reads in FASTA and FASTQ formats, usually produced by Next-Generation sequencing machines. The main processing of such FASTA/FASTQ files is mapping (aligning) the sequences to reference genomes or other databases using specialized programs like BWA, Bowtie and many others. However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome—manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks. chroot-autobuild/build/buildd/fastx-toolkit_0.0.13.1-1_armhf.deb: drwxr-xr-x root/root 0 2011-12-08 22:46 ./ drwxr-xr-x root/root 0 2011-12-08 22:46 ./usr/ drwxr-xr-x root/root 0 2011-12-08 22:46 ./usr/bin/ -rwxr-xr-x root/root 13912 2011-12-08 22:46 ./usr/bin/fastq_quality_trimmer -rwxr-xr-x root/root 13904 2011-12-08 22:46 ./usr/bin/fastx_renamer -rwxr-xr-x root/root 22320 2011-12-08 22:46 ./usr/bin/fastx_uncollapser -rwxr-xr-x root/root 5380 2011-12-08 22:46 ./usr/bin/fastq_quality_boxplot_graph.sh -rwxr-xr-x root/root 6069 2011-12-08 22:46 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh -rwxr-xr-x root/root 13904 2011-12-08 22:46 ./usr/bin/fastx_artifacts_filter -rwxr-xr-x root/root 13908 2011-12-08 22:46 ./usr/bin/fastx_reverse_complement -rwxr-xr-x root/root 13904 2011-12-08 22:46 ./usr/bin/fastq_quality_converter -rwxr-xr-x root/root 2764 2011-12-08 22:46 ./usr/bin/fasta_clipping_histogram.pl -rwxr-xr-x root/root 38760 2011-12-08 22:46 ./usr/bin/fastx_clipper -rwxr-xr-x root/root 13925 2011-12-08 22:46 ./usr/bin/fastx_barcode_splitter.pl -rwxr-xr-x root/root 13904 2011-12-08 22:46 ./usr/bin/fasta_nucleotide_changer -rwxr-xr-x root/root 5896 2011-12-08 22:46 ./usr/bin/fastx_nucleotide_distribution_graph.sh -rwxr-xr-x root/root 13900 2011-12-08 22:46 ./usr/bin/fastq_masker -rwxr-xr-x root/root 18024 2011-12-08 22:46 ./usr/bin/fastx_quality_stats -rwxr-xr-x root/root 18172 2011-12-08 22:46 ./usr/bin/fastx_collapser -rwxr-xr-x root/root 13908 2011-12-08 22:46 ./usr/bin/fastq_quality_filter -rwxr-xr-x root/root 13900 2011-12-08 22:46 ./usr/bin/fastx_trimmer -rwxr-xr-x root/root 13980 2011-12-08 22:46 ./usr/bin/fasta_formatter -rwxr-xr-x root/root 13904 2011-12-08 22:46 ./usr/bin/fastq_to_fasta drwxr-xr-x root/root 0 2011-12-08 22:46 ./usr/share/ drwxr-xr-x root/root 0 2011-12-08 22:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-08 22:46 ./usr/share/doc/fastx-toolkit/ -rw-r--r-- root/root 306 2011-07-08 04:11 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz -rw-r--r-- root/root 372 2010-01-29 22:32 ./usr/share/doc/fastx-toolkit/THANKS -rw-r--r-- root/root 425 2010-01-29 22:32 ./usr/share/doc/fastx-toolkit/NEWS.gz -rw-r--r-- root/root 37672 2011-07-08 03:55 ./usr/share/doc/fastx-toolkit/copyright -rw-r--r-- root/root 121 2008-12-26 18:51 ./usr/share/doc/fastx-toolkit/AUTHORS -rw-r--r-- root/root 3728 2009-01-20 07:06 ./usr/share/doc/fastx-toolkit/README.gz fastx-toolkit_0.0.13.1-1_armhf.changes: Format: 1.8 Date: Fri, 08 Jul 2011 13:11:37 +0900 Source: fastx-toolkit Binary: fastx-toolkit Architecture: armhf Version: 0.0.13.1-1 Distribution: precise Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Charles Plessy Description: fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools Closes: 626761 Changes: fastx-toolkit (0.0.13.1-1) unstable; urgency=low . * New upstream release (Closes: #626761). * Incremented Standards-Version to reflect conformance with Policy 3.9.2 (debian/control, no changes needed). * Corrected Vcs-Git URL (debian/control). Checksums-Sha1: db0842e6d4362c09d9408647db1395e33734dd2f 100696 fastx-toolkit_0.0.13.1-1_armhf.deb Checksums-Sha256: ffeea2afe0ee0de6e9716cfbe56988b60f4f38d13c1cd9b49aa166457e5f3900 100696 fastx-toolkit_0.0.13.1-1_armhf.deb Files: 46c83266ec257e0a11c1e1bff2a825bb 100696 science optional fastx-toolkit_0.0.13.1-1_armhf.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/fastx-toolkit-0.0.13.1 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libhttp-message-perl mime-support m4 gettext file libhtml-parser-perl intltool libhttp-cookies-perl openssl libwww-perl liburi-perl libhtml-tree-perl autotools-dev po-debconf libnet-http-perl libdb4.8 dh-translations libxml-parser-perl libcroco3 libhtml-tagset-perl libxml2 libpopt0 netbase pkg-config libgettextpo0 automake python-scour libhttp-date-perl man-db libnet-ssleay-perl libfile-listing-perl libencode-locale-perl intltool-debian libhttp-negotiate-perl python2.7 libio-socket-ssl-perl liblwp-protocol-https-perl cdbs ca-certificates html2text libwww-robotrules-perl libgtextutils0 gettext-base debhelper libunistring0 python libmagic1 libpipeline1 libexpat1 libsqlite3-0 bsdmainutils libgtextutils-dev liblwp-mediatypes-perl autoconf (Reading database ... 14502 files and directories currently installed.) Removing pkg-config ... Removing cdbs ... Removing libgtextutils-dev ... Removing dh-translations ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing python-scour ... Removing libgtextutils0 ... Purging configuration files for libgtextutils0 ... Removing debhelper ... Removing python ... Purging configuration files for python ... Removing intltool ... Removing po-debconf ... Removing libxml-parser-perl ... Removing automake ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing python2.7 ... Purging configuration files for python2.7 ... Removing html2text ... Purging configuration files for html2text ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing autoconf ... Purging configuration files for autoconf ... Removing groff-base ... Purging configuration files for groff-base ... Removing mime-support ... Purging configuration files for mime-support ... Removing m4 ... Removing gettext ... Removing file ... Removing autotools-dev ... Removing libdb4.8 ... Removing libgettextpo0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing libfile-listing-perl ... Removing libhttp-negotiate-perl ... Removing liblwp-protocol-https-perl ... Removing ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libwww-robotrules-perl ... Removing libhttp-cookies-perl ... Removing openssl ... Purging configuration files for openssl ... Removing libnet-http-perl ... Removing libio-socket-ssl-perl ... Removing libhttp-message-perl ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libhtml-tagset-perl ... Removing netbase ... Purging configuration files for netbase ... Removing libhttp-date-perl ... Removing libnet-ssleay-perl ... Removing libencode-locale-perl ... Removing liblwp-mediatypes-perl ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111208-2249 Build needed 00:01:46, 8560k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'e8fd624de1dfad73bae06f0578741fb37f28461e'] Scanning for processes to kill in build /home/buildd/build-e8fd624de1dfad73bae06f0578741fb37f28461e/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'e8fd624de1dfad73bae06f0578741fb37f28461e'] Unmounting chroot for build e8fd624de1dfad73bae06f0578741fb37f28461e... none /home/buildd/build-e8fd624de1dfad73bae06f0578741fb37f28461e/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-e8fd624de1dfad73bae06f0578741fb37f28461e/chroot-autobuild/dev/pts devpts rw,relatime,mode=600 0 0 none /home/buildd/build-e8fd624de1dfad73bae06f0578741fb37f28461e/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-e8fd624de1dfad73bae06f0578741fb37f28461e/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'e8fd624de1dfad73bae06f0578741fb37f28461e'] Removing build e8fd624de1dfad73bae06f0578741fb37f28461e