RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux komainu 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 12 Jan 11:07:43 ntpdate[3108]: adjust time server 10.211.37.1 offset -0.000069 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5449537', '/home/buildd/filecache-default/85437d411726979c3d865ddb70b8896a411f3906'] Unpacking chroot for build PACKAGEBUILD-5449537 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5449537'] Mounting chroot for build PACKAGEBUILD-5449537 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5449537', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5449537 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5449537', 'i386'] Updating debian chroot for build PACKAGEBUILD-5449537 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-proposed InRelease Get:1 http://archive-team.internal trusty Release [732 B] Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [58.5 kB] Get:7 http://ftpmaster.internal trusty-security Release [58.5 kB] Get:8 http://archive-team.internal trusty/main i386 Packages [1172 B] Get:9 http://ftpmaster.internal trusty-updates Release [58.5 kB] Ign http://archive-team.internal trusty/main Translation-en Get:10 http://ftpmaster.internal trusty-proposed Release [58.5 kB] Get:11 http://ftpmaster.internal trusty/main i386 Packages [1274 kB] Get:12 http://ftpmaster.internal trusty/universe i386 Packages [5856 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [736 kB] Get:14 http://ftpmaster.internal trusty/universe Translation-en [4025 kB] Get:15 http://ftpmaster.internal trusty-security/main i386 Packages [14 B] Get:16 http://ftpmaster.internal trusty-security/universe i386 Packages [14 B] Get:17 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal trusty-updates/main i386 Packages [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe i386 Packages [14 B] Get:21 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-proposed/main i386 Packages [63.7 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe i386 Packages [124 kB] Get:25 http://ftpmaster.internal trusty-proposed/main Translation-en [27.7 kB] Get:26 http://ftpmaster.internal trusty-proposed/universe Translation-en [77.2 kB] Fetched 12.4 MB in 6s (1854 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps1 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: libdebconfclient0 libprocps3 The following packages will be upgraded: base-files base-passwd cpp-4.8 e2fslibs e2fsprogs findutils g++-4.8 gcc-4.8 gcc-4.8-base gzip ifupdown libasan0 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libgcc-4.8-dev libgcc1 libgmp10 libgomp1 libitm1 libquadmath0 libsqlite3-0 libss2 libstdc++-4.8-dev libstdc++6 libudev1 linux-libc-dev multiarch-support procps udev 33 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 31.1 MB of archives. After this operation, 262 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files i386 7.2ubuntu1 [45.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libc6-dev i386 2.18-0ubuntu4 [2680 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libc-dev-bin i386 2.18-0ubuntu4 [63.5 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev i386 3.13.0-2.17 [736 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libc-bin i386 2.18-0ubuntu4 [1101 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libitm1 i386 4.8.2-12ubuntu2 [28.4 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 i386 4.8.2-12ubuntu2 [25.0 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libasan0 i386 4.8.2-12ubuntu2 [64.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base i386 4.8.2-12ubuntu2 [14.7 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 i386 1:4.8.2-12ubuntu2 [46.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 i386 4.8.2-12ubuntu2 [8166 B] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libquadmath0 i386 4.8.2-12ubuntu2 [186 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 i386 4.8.2-12ubuntu2 [4292 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev i386 4.8.2-12ubuntu2 [1060 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 i386 4.8.2-12ubuntu2 [6865 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 i386 4.8.2-12ubuntu2 [4853 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev i386 4.8.2-12ubuntu2 [1736 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 i386 4.8.2-12ubuntu2 [263 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libgmp10 i386 2:5.1.3+dfsg-1ubuntu1 [230 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libc6 i386 2.18-0ubuntu4 [4029 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs i386 1.42.9-2ubuntu1 [192 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs i386 1.42.9-2ubuntu1 [665 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main findutils i386 4.4.2-7 [237 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main gzip i386 1.6-3ubuntu1 [83.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libdebconfclient0 i386 0.185ubuntu1 [7312 B] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main base-passwd i386 3.5.31 [43.8 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 i386 1.42.9-2ubuntu1 [62.4 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main libss2 i386 1.42.9-2ubuntu1 [66.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 i386 3.8.2-1ubuntu2 [344 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main libprocps3 i386 1:3.3.9-1ubuntu2 [30.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main procps i386 1:3.3.9-1ubuntu2 [203 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty-proposed/main udev i386 204-5ubuntu8 [736 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libudev1 i386 204-5ubuntu8 [36.5 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty-proposed/main multiarch-support i386 2.18-0ubuntu4 [4484 B] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main ifupdown i386 0.7.47.2ubuntu1 [51.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.1 MB in 1s (15.7 MB/s) (Reading database ... 11989 files and directories currently installed.) Preparing to replace base-files 6.12ubuntu5 (using .../base-files_7.2ubuntu1_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (7.2ubuntu1) ... Installing new version of config file /etc/debian_version ... (Reading database ... 11989 files and directories currently installed.) Preparing to replace libc6-dev:i386 2.18-0ubuntu2 (using .../libc6-dev_2.18-0ubuntu4_i386.deb) ... Unpacking replacement libc6-dev:i386 ... Preparing to replace libc-dev-bin 2.18-0ubuntu2 (using .../libc-dev-bin_2.18-0ubuntu4_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace linux-libc-dev:i386 3.12.0-7.15 (using .../linux-libc-dev_3.13.0-2.17_i386.deb) ... Unpacking replacement linux-libc-dev:i386 ... Preparing to replace libc-bin 2.18-0ubuntu2 (using .../libc-bin_2.18-0ubuntu4_i386.deb) ... Unpacking replacement libc-bin ... Preparing to replace libc6:i386 2.18-0ubuntu2 (using .../libc6_2.18-0ubuntu4_i386.deb) ... Unpacking replacement libc6:i386 ... Preparing to replace libgcc1:i386 1:4.8.2-10ubuntu2 (using .../libgcc1_1%3a4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libgcc1:i386 ... Preparing to replace gcc-4.8-base:i386 4.8.2-10ubuntu2 (using .../gcc-4.8-base_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement gcc-4.8-base:i386 ... Setting up gcc-4.8-base:i386 (4.8.2-12ubuntu2) ... Setting up libgcc1:i386 (1:4.8.2-12ubuntu2) ... Setting up libc6:i386 (2.18-0ubuntu4) ... Setting up libc-bin (2.18-0ubuntu4) ... (Reading database ... 11994 files and directories currently installed.) Preparing to replace libitm1:i386 4.8.2-10ubuntu2 (using .../libitm1_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libitm1:i386 ... Preparing to replace libgomp1:i386 4.8.2-10ubuntu2 (using .../libgomp1_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libgomp1:i386 ... Preparing to replace libasan0:i386 4.8.2-10ubuntu2 (using .../libasan0_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libasan0:i386 ... Preparing to replace libatomic1:i386 4.8.2-10ubuntu2 (using .../libatomic1_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libatomic1:i386 ... Preparing to replace libquadmath0:i386 4.8.2-10ubuntu2 (using .../libquadmath0_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libquadmath0:i386 ... Preparing to replace cpp-4.8 4.8.2-10ubuntu2 (using .../cpp-4.8_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace libstdc++-4.8-dev:i386 4.8.2-10ubuntu2 (using .../libstdc++-4.8-dev_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libstdc++-4.8-dev:i386 ... Preparing to replace g++-4.8 4.8.2-10ubuntu2 (using .../g++-4.8_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.2-10ubuntu2 (using .../gcc-4.8_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:i386 4.8.2-10ubuntu2 (using .../libgcc-4.8-dev_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libgcc-4.8-dev:i386 ... Preparing to replace libstdc++6:i386 4.8.2-10ubuntu2 (using .../libstdc++6_4.8.2-12ubuntu2_i386.deb) ... Unpacking replacement libstdc++6:i386 ... Setting up libstdc++6:i386 (4.8.2-12ubuntu2) ... Processing triggers for libc-bin ... (Reading database ... 11994 files and directories currently installed.) Preparing to replace libgmp10:i386 2:5.1.2+dfsg-3ubuntu3 (using .../libgmp10_2%3a5.1.3+dfsg-1ubuntu1_i386.deb) ... Unpacking replacement libgmp10:i386 ... Preparing to replace e2fslibs:i386 1.42.8-1ubuntu3 (using .../e2fslibs_1.42.9-2ubuntu1_i386.deb) ... Unpacking replacement e2fslibs:i386 ... Setting up e2fslibs:i386 (1.42.9-2ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11994 files and directories currently installed.) Preparing to replace e2fsprogs 1.42.8-1ubuntu3 (using .../e2fsprogs_1.42.9-2ubuntu1_i386.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42.9-2ubuntu1) ... (Reading database ... 11997 files and directories currently installed.) Preparing to replace findutils 4.4.2-6ubuntu2 (using .../findutils_4.4.2-7_i386.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.2-7) ... (Reading database ... 11997 files and directories currently installed.) Preparing to replace gzip 1.6-2ubuntu1 (using .../gzip_1.6-3ubuntu1_i386.deb) ... Unpacking replacement gzip ... Setting up gzip (1.6-3ubuntu1) ... Selecting previously unselected package libdebconfclient0. (Reading database ... 11997 files and directories currently installed.) Unpacking libdebconfclient0 (from .../libdebconfclient0_0.185ubuntu1_i386.deb) ... Setting up libdebconfclient0 (0.185ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 12002 files and directories currently installed.) Preparing to replace base-passwd 3.5.28 (using .../base-passwd_3.5.31_i386.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.31) ... Changing shell of daemon from /bin/sh to /usr/sbin/nologin Changing shell of bin from /bin/sh to /usr/sbin/nologin Changing shell of sys from /bin/sh to /usr/sbin/nologin Changing shell of games from /bin/sh to /usr/sbin/nologin Changing shell of man from /bin/sh to /usr/sbin/nologin Changing shell of lp from /bin/sh to /usr/sbin/nologin Changing shell of mail from /bin/sh to /usr/sbin/nologin Changing shell of news from /bin/sh to /usr/sbin/nologin Changing shell of uucp from /bin/sh to /usr/sbin/nologin Changing shell of proxy from /bin/sh to /usr/sbin/nologin Changing shell of www-data from /bin/sh to /usr/sbin/nologin Changing shell of backup from /bin/sh to /usr/sbin/nologin Changing shell of list from /bin/sh to /usr/sbin/nologin Changing shell of irc from /bin/sh to /usr/sbin/nologin Changing shell of gnats from /bin/sh to /usr/sbin/nologin Changing shell of nobody from /bin/sh to /usr/sbin/nologin 16 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 12003 files and directories currently installed.) Preparing to replace libcomerr2:i386 1.42.8-1ubuntu3 (using .../libcomerr2_1.42.9-2ubuntu1_i386.deb) ... Unpacking replacement libcomerr2:i386 ... Setting up libcomerr2:i386 (1.42.9-2ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 12003 files and directories currently installed.) Preparing to replace libss2:i386 1.42.8-1ubuntu3 (using .../libss2_1.42.9-2ubuntu1_i386.deb) ... Unpacking replacement libss2:i386 ... Setting up libss2:i386 (1.42.9-2ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 12003 files and directories currently installed.) Preparing to replace libsqlite3-0:i386 3.8.2-1ubuntu1 (using .../libsqlite3-0_3.8.2-1ubuntu2_i386.deb) ... Unpacking replacement libsqlite3-0:i386 ... Selecting previously unselected package libprocps3:i386. Unpacking libprocps3:i386 (from .../libprocps3_1%3a3.3.9-1ubuntu2_i386.deb) ... Preparing to replace procps 1:3.3.8-2ubuntu3 (using .../procps_1%3a3.3.9-1ubuntu2_i386.deb) ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking replacement procps ... Preparing to replace udev 204-5ubuntu6 (using .../udev_204-5ubuntu8_i386.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:i386 204-5ubuntu6 (using .../libudev1_204-5ubuntu8_i386.deb) ... Unpacking replacement libudev1:i386 ... Preparing to replace multiarch-support 2.18-0ubuntu2 (using .../multiarch-support_2.18-0ubuntu4_i386.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.18-0ubuntu4) ... (Reading database ... 12010 files and directories currently installed.) Preparing to replace ifupdown 0.7.47.1ubuntu1 (using .../ifupdown_0.7.47.2ubuntu1_i386.deb) ... Unpacking replacement ifupdown ... Setting up libc-dev-bin (2.18-0ubuntu4) ... Setting up linux-libc-dev:i386 (3.13.0-2.17) ... Setting up libc6-dev:i386 (2.18-0ubuntu4) ... Setting up libitm1:i386 (4.8.2-12ubuntu2) ... Setting up libgomp1:i386 (4.8.2-12ubuntu2) ... Setting up libasan0:i386 (4.8.2-12ubuntu2) ... Setting up libatomic1:i386 (4.8.2-12ubuntu2) ... Setting up libquadmath0:i386 (4.8.2-12ubuntu2) ... Setting up libgmp10:i386 (2:5.1.3+dfsg-1ubuntu1) ... Setting up cpp-4.8 (4.8.2-12ubuntu2) ... Setting up libgcc-4.8-dev:i386 (4.8.2-12ubuntu2) ... Setting up libstdc++-4.8-dev:i386 (4.8.2-12ubuntu2) ... Setting up gcc-4.8 (4.8.2-12ubuntu2) ... Setting up g++-4.8 (4.8.2-12ubuntu2) ... Setting up libsqlite3-0:i386 (3.8.2-1ubuntu2) ... Setting up libprocps3:i386 (1:3.3.9-1ubuntu2) ... Setting up procps (1:3.3.9-1ubuntu2) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libudev1:i386 (204-5ubuntu8) ... Setting up udev (204-5ubuntu8) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.47.2ubuntu1) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5449537', 'i386', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'fastx-toolkit_0.0.14-1.dsc'] Initiating build PACKAGEBUILD-5449537 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 i686 Automatic build of fastx-toolkit_0.0.14-1 on komainu by sbuild/i386 1.170.5 Build started at 20140112-1108 ****************************************************************************** fastx-toolkit_0.0.14-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), automake, autotools-dev, libtool, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl Checking for already installed source dependencies... debhelper: missing automake: missing autotools-dev: missing libtool: missing pkg-config: missing libgtextutils-dev: missing help2man: missing libgd-graph-perl: missing libperlio-gzip-perl: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper automake autotools-dev libtool pkg-config libgtextutils-dev help2man libgd-graph-perl libperlio-gzip-perl Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps1 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: apparmor-easyprof autoconf bsdmainutils dh-apparmor dh-python file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libfontconfig1 libfreetype6 libgd-gd2-perl libgd-text-perl libgd3 libglib2.0-0 libgtextutils0 libjbig0 libjpeg-turbo8 libjpeg8 liblocale-gettext-perl libmagic1 libmpdec2 libpipeline1 libpopt0 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libssl1.0.0 libtiff5 libunistring0 libvpx1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal ucf Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff ttf-dustin libgd-tools libtool-doc automaken gfortran fortran95-compiler gcj-jdk less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autoconf automake autotools-dev bsdmainutils debhelper dh-apparmor dh-python file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base help2man intltool-debian libasprintf0c2 libcroco3 libexpat1 libfontconfig1 libfreetype6 libgd-gd2-perl libgd-graph-perl libgd-text-perl libgd3 libglib2.0-0 libgtextutils-dev libgtextutils0 libjbig0 libjpeg-turbo8 libjpeg8 liblocale-gettext-perl libmagic1 libmpdec2 libperlio-gzip-perl libpipeline1 libpopt0 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libssl1.0.0 libtiff5 libtool libunistring0 libvpx1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db mime-support pkg-config po-debconf python3 python3-minimal python3.3 python3.3-minimal ucf 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 16.2 MB of archives. After this operation, 62.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 i386 2.1.0-4ubuntu1 [71.4 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main liblocale-gettext-perl i386 1.05-7build3 [19.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 i386 1:5.14-2ubuntu1 [184 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpopt0 i386 1.16-8ubuntu1 [25.8 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 i386 1.0.1f-1ubuntu1 [780 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal i386 3.3.3-6 [394 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libmpdec2 i386 2.4.0-6 [73.3 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib i386 3.3.3-6 [1963 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal i386 3.3.3-6 [1306 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 i386 0.18.3.1-1ubuntu2 [6618 B] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 i386 2.39.2-0ubuntu2 [1017 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 i386 1.2.6-1 [23.3 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libxau6 i386 1:1.0.8-1 [8352 B] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libxdmcp6 i386 1:1.1.1-1 [13.1 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libxcb1 i386 1.9.1-3.1ubuntu1 [39.2 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libx11-data all 2:1.6.2-1ubuntu2 [111 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libx11-6 i386 2:1.6.2-1ubuntu2 [557 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 i386 2.9.1+dfsg1-3ubuntu3 [555 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main groff-base i386 1.22.2-4 [1035 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils i386 9.0.5ubuntu1 [197 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main man-db i386 2.6.5-3 [703 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 i386 0.6.8-2ubuntu1 [81.1 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main fonts-dejavu-core all 2.34-1ubuntu1 [1024 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main ucf all 3.0027+nmu1 [56.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main fontconfig-config all 2.11.0-0ubuntu3 [47.3 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libfreetype6 i386 2.5.2-1ubuntu1 [300 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main libfontconfig1 i386 2.11.0-0ubuntu3 [123 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8 i386 1.3.0-0ubuntu2 [107 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libjbig0 i386 2.0-2ubuntu4 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libtiff5 i386 4.0.3-7 [143 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libvpx1 i386 1.3.0-2 [518 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libxpm4 i386 1:3.5.10-1 [38.2 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libgd3 i386 2.1.0-3 [142 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libsigsegv2 i386 2.10-2 [14.8 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 i386 0.9.3-5ubuntu3 [272 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 i386 3.3.3-6 [131 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty-proposed/main python3-minimal i386 3.3.3-1 [23.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpython3-stdlib i386 3.3.3-1 [7090 B] Get:41 http://ftpmaster.internal/ubuntu/ trusty-proposed/main python3 i386 3.3.3-1 [8682 B] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main dh-python all 1.20131021-1ubuntu8 [50.2 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main file i386 1:5.14-2ubuntu1 [18.4 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base i386 0.18.3.1-1ubuntu2 [47.9 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main m4 i386 1.4.17-2ubuntu1 [191 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main autoconf all 2.69-2 [573 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main automake all 1:1.14.1-2ubuntu1 [510 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main gettext i386 0.18.3.1-1ubuntu2 [815 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu37 [20.3 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu37 [7316 B] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131127ubuntu1 [604 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main help2man i386 1.43.3 [61.7 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/universe libgtextutils0 i386 0.7-1 [19.1 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/universe libgtextutils-dev i386 0.7-1 [23.0 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main libperlio-gzip-perl i386 0.18-1build3 [15.7 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main libtool i386 2.4.2-1.6ubuntu2 [188 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main pkg-config i386 0.26-1ubuntu4 [40.5 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main libgd-gd2-perl i386 1:2.46-3.1build1 [181 kB] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main libgd-text-perl all 0.86-8 [38.2 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main libgd-graph-perl all 1.44-6 [371 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.2 MB in 1s (13.1 MB/s) Selecting previously unselected package libexpat1:i386. (Reading database ... 12009 files and directories currently installed.) Unpacking libexpat1:i386 (from .../libexpat1_2.1.0-4ubuntu1_i386.deb) ... Selecting previously unselected package liblocale-gettext-perl. Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7build3_i386.deb) ... Selecting previously unselected package libmagic1:i386. Unpacking libmagic1:i386 (from .../libmagic1_1%3a5.14-2ubuntu1_i386.deb) ... Selecting previously unselected package libpopt0:i386. Unpacking libpopt0:i386 (from .../libpopt0_1.16-8ubuntu1_i386.deb) ... Selecting previously unselected package libssl1.0.0:i386. Unpacking libssl1.0.0:i386 (from .../libssl1.0.0_1.0.1f-1ubuntu1_i386.deb) ... Selecting previously unselected package libpython3.3-minimal:i386. Unpacking libpython3.3-minimal:i386 (from .../libpython3.3-minimal_3.3.3-6_i386.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libmpdec2:i386. Unpacking libmpdec2:i386 (from .../libmpdec2_2.4.0-6_i386.deb) ... Selecting previously unselected package libpython3.3-stdlib:i386. Unpacking libpython3.3-stdlib:i386 (from .../libpython3.3-stdlib_3.3.3-6_i386.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.3-6_i386.deb) ... Selecting previously unselected package libasprintf0c2:i386. Unpacking libasprintf0c2:i386 (from .../libasprintf0c2_0.18.3.1-1ubuntu2_i386.deb) ... Selecting previously unselected package libglib2.0-0:i386. Unpacking libglib2.0-0:i386 (from .../libglib2.0-0_2.39.2-0ubuntu2_i386.deb) ... Selecting previously unselected package libpipeline1:i386. Unpacking libpipeline1:i386 (from .../libpipeline1_1.2.6-1_i386.deb) ... Selecting previously unselected package libxau6:i386. Unpacking libxau6:i386 (from .../libxau6_1%3a1.0.8-1_i386.deb) ... Selecting previously unselected package libxdmcp6:i386. Unpacking libxdmcp6:i386 (from .../libxdmcp6_1%3a1.1.1-1_i386.deb) ... Selecting previously unselected package libxcb1:i386. Unpacking libxcb1:i386 (from .../libxcb1_1.9.1-3.1ubuntu1_i386.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.6.2-1ubuntu2_all.deb) ... Selecting previously unselected package libx11-6:i386. Unpacking libx11-6:i386 (from .../libx11-6_2%3a1.6.2-1ubuntu2_i386.deb) ... Selecting previously unselected package libxml2:i386. Unpacking libxml2:i386 (from .../libxml2_2.9.1+dfsg1-3ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-4_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-3_i386.deb) ... Selecting previously unselected package libcroco3:i386. Unpacking libcroco3:i386 (from .../libcroco3_0.6.8-2ubuntu1_i386.deb) ... Selecting previously unselected package fonts-dejavu-core. Unpacking fonts-dejavu-core (from .../fonts-dejavu-core_2.34-1ubuntu1_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0027+nmu1_all.deb) ... Moving old data out of the way Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.11.0-0ubuntu3_all.deb) ... Selecting previously unselected package libfreetype6:i386. Unpacking libfreetype6:i386 (from .../libfreetype6_2.5.2-1ubuntu1_i386.deb) ... Selecting previously unselected package libfontconfig1:i386. Unpacking libfontconfig1:i386 (from .../libfontconfig1_2.11.0-0ubuntu3_i386.deb) ... Selecting previously unselected package libjpeg-turbo8:i386. Unpacking libjpeg-turbo8:i386 (from .../libjpeg-turbo8_1.3.0-0ubuntu2_i386.deb) ... Selecting previously unselected package libjpeg8:i386. Unpacking libjpeg8:i386 (from .../libjpeg8_8c-2ubuntu8_i386.deb) ... Selecting previously unselected package libjbig0:i386. Unpacking libjbig0:i386 (from .../libjbig0_2.0-2ubuntu4_i386.deb) ... Selecting previously unselected package libtiff5:i386. Unpacking libtiff5:i386 (from .../libtiff5_4.0.3-7_i386.deb) ... Selecting previously unselected package libvpx1:i386. Unpacking libvpx1:i386 (from .../libvpx1_1.3.0-2_i386.deb) ... Selecting previously unselected package libxpm4:i386. Unpacking libxpm4:i386 (from .../libxpm4_1%3a3.5.10-1_i386.deb) ... Selecting previously unselected package libgd3:i386. Unpacking libgd3:i386 (from .../libgd3_2.1.0-3_i386.deb) ... Selecting previously unselected package libsigsegv2:i386. Unpacking libsigsegv2:i386 (from .../libsigsegv2_2.10-2_i386.deb) ... Selecting previously unselected package libunistring0:i386. Unpacking libunistring0:i386 (from .../libunistring0_0.9.3-5ubuntu3_i386.deb) ... Selecting previously unselected package python3.3. Unpacking python3.3 (from .../python3.3_3.3.3-6_i386.deb) ... Selecting previously unselected package python3-minimal. Unpacking python3-minimal (from .../python3-minimal_3.3.3-1_i386.deb) ... Selecting previously unselected package libpython3-stdlib:i386. Unpacking libpython3-stdlib:i386 (from .../libpython3-stdlib_3.3.3-1_i386.deb) ... Selecting previously unselected package python3. Unpacking python3 (from .../python3_3.3.3-1_i386.deb) ... Selecting previously unselected package dh-python. Unpacking dh-python (from .../dh-python_1.20131021-1ubuntu8_all.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_1%3a5.14-2ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.3.1-1ubuntu2_i386.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../m4_1.4.17-2ubuntu1_i386.deb) ... 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Selecting previously unselected package libgd-gd2-perl. Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.46-3.1build1_i386.deb) ... Selecting previously unselected package libgd-text-perl. Unpacking libgd-text-perl (from .../libgd-text-perl_0.86-8_all.deb) ... Selecting previously unselected package libgd-graph-perl. Unpacking libgd-graph-perl (from .../libgd-graph-perl_1.44-6_all.deb) ... Setting up libexpat1:i386 (2.1.0-4ubuntu1) ... Setting up liblocale-gettext-perl (1.05-7build3) ... Setting up libmagic1:i386 (1:5.14-2ubuntu1) ... Setting up libpopt0:i386 (1.16-8ubuntu1) ... Setting up libssl1.0.0:i386 (1.0.1f-1ubuntu1) ... Setting up libpython3.3-minimal:i386 (3.3.3-6) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libmpdec2:i386 (2.4.0-6) ... Setting up libpython3.3-stdlib:i386 (3.3.3-6) ... Setting up python3.3-minimal (3.3.3-6) ... Setting up libasprintf0c2:i386 (0.18.3.1-1ubuntu2) ... Setting up libglib2.0-0:i386 (2.39.2-0ubuntu2) ... No schema files found: doing nothing. Setting up libpipeline1:i386 (1.2.6-1) ... Setting up libxau6:i386 (1:1.0.8-1) ... Setting up libxdmcp6:i386 (1:1.1.1-1) ... Setting up libxcb1:i386 (1.9.1-3.1ubuntu1) ... Setting up libx11-data (2:1.6.2-1ubuntu2) ... Setting up libx11-6:i386 (2:1.6.2-1ubuntu2) ... Setting up libxml2:i386 (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-4) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:i386 (0.6.8-2ubuntu1) ... Setting up fonts-dejavu-core (2.34-1ubuntu1) ... Setting up ucf (3.0027+nmu1) ... Setting up fontconfig-config (2.11.0-0ubuntu3) ... Setting up libfreetype6:i386 (2.5.2-1ubuntu1) ... Setting up libfontconfig1:i386 (2.11.0-0ubuntu3) ... Setting up libjpeg-turbo8:i386 (1.3.0-0ubuntu2) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjbig0:i386 (2.0-2ubuntu4) ... Setting up libtiff5:i386 (4.0.3-7) ... Setting up libvpx1:i386 (1.3.0-2) ... Setting up libxpm4:i386 (1:3.5.10-1) ... Setting up libgd3:i386 (2.1.0-3) ... Setting up libsigsegv2:i386 (2.10-2) ... Setting up libunistring0:i386 (0.9.3-5ubuntu3) ... Setting up python3.3 (3.3.3-6) ... Setting up python3-minimal (3.3.3-1) ... Setting up libpython3-stdlib:i386 (3.3.3-1) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up m4 (1.4.17-2ubuntu1) ... Setting up autoconf (2.69-2) ... Setting up autotools-dev (20130810.1) ... Setting up automake (1:1.14.1-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up help2man (1.43.3) ... Setting up libgtextutils0:i386 (0.7-1) ... Setting up libgtextutils-dev:i386 (0.7-1) ... Setting up libperlio-gzip-perl (0.18-1build3) ... Setting up libtool (2.4.2-1.6ubuntu2) ... Setting up pkg-config (0.26-1ubuntu4) ... Setting up libgd-gd2-perl (1:2.46-3.1build1) ... Setting up libgd-text-perl (0.86-8) ... Setting up libgd-graph-perl (1.44-6) ... Setting up python3 (3.3.3-1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20131021-1ubuntu8) ... Setting up apparmor-easyprof (2.8.0-0ubuntu37) ... Setting up dh-apparmor (2.8.0-0ubuntu37) ... Setting up debhelper (9.20131127ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.17.1ubuntu1 gcc-4.8_4.8.2-12ubuntu2 g++-4.8_4.8.2-12ubuntu2 binutils_2.24-2ubuntu2 libstdc++-4.8-dev_4.8.2-12ubuntu2 libstdc++6_4.8.2-12ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sun Jan 12 06:56:58 2014 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.14-1.dsc dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.14 dpkg-source: info: unpacking fastx-toolkit_0.0.14.orig.tar.gz dpkg-source: info: unpacking fastx-toolkit_0.0.14-1.debian.tar.gz dpkg-buildpackage: source package fastx-toolkit dpkg-buildpackage: source version 0.0.14-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build fastx-toolkit-0.0.14 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh clean --with autotools_dev dh_testdir dh_auto_clean dh_autotools-dev_restoreconfig for c_g in `find . -type f -name config.guess` ; do if test -e "$c_g.dh-orig" ; then mv -f "$c_g.dh-orig" "$c_g" ; fi ; done for c_s in `find . -type f -name config.sub` ; do if test -e "$c_s.dh-orig" ; then mv -f "$c_s.dh-orig" "$c_s" ; fi ; done find . -type f \( -name config.guess.dh-orig -o -name config.sub.dh-orig \) -delete dh_clean rm -f debian/fastx-toolkit.substvars rm -f debian/fastx-toolkit.*.debhelper rm -rf debian/fastx-toolkit/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with autotools_dev dh_testdir dh_autotools-dev_updateconfig for c_g in `find -type f -name config.guess` ; do if ! test -e "$c_g.dh-orig" ; then mv -f "$c_g" "$c_g.dh-orig" ; cp -f /usr/share/misc/config.guess "$c_g" ; fi ; done for c_s in `find -type f -name config.sub` ; do if ! test -e "$c_s.dh-orig" ; then mv -f "$c_s" "$c_s.dh-orig" ; cp -f /usr/share/misc/config.sub "$c_s" ; fi ; done debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' ./reconf - libtoolize. libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `config'. libtoolize: linking file `config/config.guess' libtoolize: linking file `config/config.sub' libtoolize: linking file `config/install-sh' libtoolize: linking file `config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' - aclocal. - autoconf. - autoheader. - automake. configure.ac:20: installing 'config/compile' configure.ac:18: installing 'config/missing' Makefile.am: installing './INSTALL' src/fasta_formatter/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long int... yes checking for ISO C++ TR1 include files... yes checking whether g++ supports C++11 features by default... no checking whether g++ supports C++11 features with -std=c++11... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTEXTUTILS... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/libfastx/Makefile config.status: creating src/fastx_clipper/Makefile config.status: creating src/fastq_to_fasta/Makefile config.status: creating src/fastx_quality_stats/Makefile config.status: creating src/fastq_quality_converter/Makefile config.status: creating src/fastx_trimmer/Makefile config.status: creating src/fastq_quality_filter/Makefile config.status: creating src/fastq_quality_trimmer/Makefile config.status: creating src/fastx_artifacts_filter/Makefile config.status: creating src/fastx_reverse_complement/Makefile config.status: creating src/fastx_collapser/Makefile config.status: creating src/fastx_uncollapser/Makefile config.status: creating src/seqalign_test/Makefile config.status: creating src/fasta_formatter/Makefile config.status: creating src/fasta_nucleotide_changer/Makefile config.status: creating src/fastx_renamer/Makefile config.status: creating src/fastq_masker/Makefile config.status: creating galaxy/Makefile config.status: creating galaxy/tools/Makefile config.status: creating galaxy/tools/fastx_toolkit/Makefile config.status: creating galaxy/test-data/Makefile config.status: creating galaxy/static/Makefile config.status: creating galaxy/static/fastx_icons/Makefile config.status: creating galaxy/tool-data/Makefile config.status: creating scripts/Makefile config.status: creating build_scripts/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' dh_auto_build make -j1 make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' make all-recursive make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' Making all in m4 make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/m4' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/m4' Making all in src make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src' Making all in libfastx make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/libfastx' gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o chomp.o chomp.c gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx.o fastx.c gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_args.o fastx_args.c g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp rm -f libfastx.a ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o ranlib libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/libfastx' Making all in fastx_clipper make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_clipper' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_clipper' Making all in fastx_trimmer make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_trimmer.o fastx_trimmer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_trimmer' Making all in fastx_quality_stats make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_quality_stats' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_quality_stats.o fastx_quality_stats.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_quality_stats' Making all in fastq_quality_converter make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_converter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_converter.o fastq_quality_converter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_converter' Making all in fastq_to_fasta make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_to_fasta' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_to_fasta.o fastq_to_fasta.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_to_fasta' Making all in fastq_quality_filter make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_filter.o fastq_quality_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_filter' Making all in fastq_quality_trimmer make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_trimmer.o fastq_quality_trimmer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' Making all in fastx_artifacts_filter make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_artifacts_filter.o fastx_artifacts_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' Making all in fastx_reverse_complement make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_reverse_complement' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_reverse_complement.o fastx_reverse_complement.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_reverse_complement' Making all in fastx_collapser make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_collapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_collapser' Making all in fastx_uncollapser make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_uncollapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_uncollapser' Making all in seqalign_test make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/seqalign_test' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/seqalign_test' Making all in fasta_formatter make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_formatter' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_formatter' Making all in fasta_nucleotide_changer make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_nucleotide_changer.o fasta_nucleotide_changer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' Making all in fastx_renamer make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_renamer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_renamer.o fastx_renamer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_renamer' Making all in fastq_masker make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_masker' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_masker.o fastq_masker.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o 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`/build/buildd/fastx-toolkit-0.0.14/src/fastq_to_fasta' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_to_fasta' Making check in fastq_quality_filter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_filter' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_filter' Making check in fastq_quality_trimmer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' Making check in fastx_artifacts_filter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' Making check in fastx_reverse_complement make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_reverse_complement' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_reverse_complement' Making check in fastx_collapser make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_collapser' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_collapser' Making check in fastx_uncollapser make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_uncollapser' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_uncollapser' Making check in seqalign_test make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/seqalign_test' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/seqalign_test' Making check in fasta_formatter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_formatter' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_formatter' Making check in fasta_nucleotide_changer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' Making check in fastx_renamer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_renamer' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_renamer' Making check in fastq_masker make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_masker' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_masker' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src' Making check in doc make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/doc' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/doc' Making check in galaxy make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' Making check in tools make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' Making check in fastx_toolkit make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Nothing to be done for `check'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' make[4]: Nothing to be done for `check-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' Making check in test-data make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/test-data' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/test-data' Making check in static make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' Making check in fastx_icons make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Nothing to be done for `check'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' make[4]: Nothing to be done for `check-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' Making check in tool-data make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tool-data' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tool-data' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' Making check in scripts make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/scripts' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/scripts' Making check in build_scripts make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/build_scripts' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/build_scripts' make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' /usr/bin/fakeroot debian/rules binary dh binary --with autotools_dev dh_testroot dh_prep rm -f debian/fastx-toolkit.substvars rm -f debian/fastx-toolkit.*.debhelper rm -rf debian/fastx-toolkit/ dh_auto_install install -d debian/fastx-toolkit make -j1 install DESTDIR=/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' Making install in m4 make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/m4' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/m4' make[3]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/aclocal' /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_compile_stdcxx_11.m4 ax_cxx_header_stdcxx_tr1.m4 '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/aclocal' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/m4' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/m4' Making install in src make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src' Making install in libfastx make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/libfastx' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/libfastx' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/libfastx' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/libfastx' Making install in fastx_clipper make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_clipper' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_clipper' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_clipper /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_clipper make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_clipper' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_clipper' Making install in fastx_trimmer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_trimmer' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_trimmer' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_trimmer /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_trimmer make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_trimmer' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_trimmer' Making install in fastx_quality_stats make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_quality_stats' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_quality_stats' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_quality_stats /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_quality_stats make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_quality_stats' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_quality_stats' Making install in fastq_quality_converter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_converter' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_converter' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_converter /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_converter make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_converter' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_converter' Making install in fastq_to_fasta make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_to_fasta' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_to_fasta' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_to_fasta /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_to_fasta make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_to_fasta' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_to_fasta' Making install in fastq_quality_filter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_filter' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_filter' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_filter /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_filter make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_filter' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_filter' Making install in fastq_quality_trimmer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' Making install in fastx_artifacts_filter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' Making install in fastx_reverse_complement make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_reverse_complement' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_reverse_complement' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_reverse_complement /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_reverse_complement make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_reverse_complement' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_reverse_complement' Making install in fastx_collapser make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_collapser' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_collapser' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_collapser /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_collapser make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_collapser' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_collapser' Making install in fastx_uncollapser make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_uncollapser' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_uncollapser' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_uncollapser /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_uncollapser make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_uncollapser' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_uncollapser' Making install in seqalign_test make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/seqalign_test' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/seqalign_test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/seqalign_test' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/seqalign_test' Making install in fasta_formatter make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_formatter' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_formatter' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_formatter /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_formatter make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_formatter' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_formatter' Making install in fasta_nucleotide_changer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' Making install in fastx_renamer make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_renamer' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_renamer' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_renamer /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_renamer make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_renamer' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastx_renamer' Making install in fastq_masker make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_masker' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_masker' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_masker /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_masker make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_masker' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src/fastq_masker' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/src' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/src' Making install in doc make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/doc' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/doc' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/doc' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/doc' Making install in galaxy make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' Making install in tools make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' Making install in fastx_toolkit make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tools' Making install in test-data make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/test-data' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/test-data' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/test-data' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/test-data' Making install in static make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' Making install in fastx_icons make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' make[5]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/static' Making install in tool-data make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tool-data' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tool-data' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tool-data' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy/tool-data' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' make[4]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/galaxy' Making install in scripts make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/scripts' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/scripts' /bin/mkdir -p '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/scripts' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/scripts' Making install in build_scripts make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/build_scripts' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14/build_scripts' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/build_scripts' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14/build_scripts' make[2]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' make[3]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' make[2]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' dh_install rm --recursive /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/aclocal make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' dh_installdocs install -g 0 -o 0 -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit chown -R 0:0 debian/fastx-toolkit/usr/share/doc chmod -R go=rX debian/fastx-toolkit/usr/share/doc chmod -R u\+rw debian/fastx-toolkit/usr/share/doc install -g 0 -o 0 -m 644 -p debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian install -g 0 -o 0 -m 644 -p debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' dh_installchangelogs -k NEWS install -o 0 -g 0 -p -m644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian install -o 0 -g 0 -p -m644 debian/NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.Debian install -o 0 -g 0 -p -m644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' debian/rules override_dh_installman make[1]: Entering directory `/build/buildd/fastx-toolkit-0.0.14' mkdir -p /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1 # The name strings are obtained from # http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools") # and # http://hannonlab.cshl.edu/fastx_toolkit/commandline.html help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='changes the width of sequences line in a FASTA file' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_formatter > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convets FASTA sequences from/to RNA/DNA' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name="Masks nucleotides with 'N' (or other character) based on quality" \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_masker > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 # FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Converts sequences based on quality' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Filters sequences based on quality' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 dh_installman debian/fastq_quality_trimmer.1 install -p -m644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new chmod 644 fastq_quality_trimmer.1.new mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1 man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new chmod 644 fasta_nucleotide_changer.1.new mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1 man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new chmod 644 fastq_quality_filter.1.new mv -f fastq_quality_filter.1.new fastq_quality_filter.1 man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new chmod 644 fastq_quality_converter.1.new mv -f fastq_quality_converter.1.new fastq_quality_converter.1 man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new chmod 644 fastq_masker.1.new mv -f fastq_masker.1.new fastq_masker.1 man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new chmod 644 fasta_formatter.1.new mv -f fasta_formatter.1.new fasta_formatter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convert FASTQ files to FASTA files' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTQ/A Artifacts Filter' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Clipper' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_clipper > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Collapser' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_collapser > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTX Statistics' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Renamer' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_renamer > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTQ/A Reverse Complement' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Trimmer' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_trimmer > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Uncollapser' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1 # Perl scripts add the full path to usage advise which needs to be removed # The script fasta_clipping_histogram.pl does not feature a '-h' option help2man --no-info --no-discard-stderr --version-string='0.0.14' -h '' \ --name='Create a Linker Clipping Information Histogram' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \ > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTX Barcode Splitter' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \ > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Solexa-Quality BoxPlot plotter' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Nucleotide Distribution Plotter' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Nucleotide Distribution Plotter' \ /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 for man in `find /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done find: `*.1': No such file or directory /bin/sh: 1: cannot create /build/buildd/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1: Is a directory make[1]: Leaving directory `/build/buildd/fastx-toolkit-0.0.14' dh_perl (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars dh_link rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS dh_compress cd debian/fastx-toolkit chmod a-x usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fasta_formatter.1 usr/share/doc/fastx-toolkit/README usr/share/doc/fastx-toolkit/changelog usr/share/doc/fastx-toolkit/NEWS.Debian usr/share/doc/fastx-toolkit/changelog.Debian gzip -9nf usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fasta_formatter.1 usr/share/doc/fastx-toolkit/README usr/share/doc/fastx-toolkit/changelog usr/share/doc/fastx-toolkit/NEWS.Debian usr/share/doc/fastx-toolkit/changelog.Debian cd '/build/buildd/fastx-toolkit-0.0.14' rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz dh_fixperms find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/fastx-toolkit/usr/lib/perl5 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: fastx-toolkit dh_strip debug symbol extraction: packages to act on: fastx-toolkit dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `fastx-toolkit-dbgsym' in `../fastx-toolkit-dbgsym_0.0.14-1_i386.ddeb'. strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer dh_makeshlibs rm -f debian/fastx-toolkit/DEBIAN/shlibs dh_shlibdeps install -o 0 -g 0 -d debian/fastx-toolkit/DEBIAN dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastx_trimmer dh_installdeb dh_gencontrol echo misc:Depends= >> debian/fastx-toolkit.substvars dpkg-gencontrol -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends} chmod 644 debian/fastx-toolkit/DEBIAN/control chown 0:0 debian/fastx-toolkit/DEBIAN/control dh_md5sums (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/fastx-toolkit/DEBIAN/md5sums chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/fastx-toolkit .. INFO: pkgstriptranslations version 118 pkgstriptranslations: processing fastx-toolkit (in debian/fastx-toolkit); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastx-toolkit/DEBIAN/control, package fastx-toolkit, directory debian/fastx-toolkit .. removing usr/share/doc/fastx-toolkit/changelog.gz pkgstripfiles: PNG optimization for package fastx-toolkit took 0 s dpkg-deb: warning: 'debian/fastx-toolkit/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `fastx-toolkit' in `../fastx-toolkit_0.0.14-1_i386.deb'. dpkg-genchanges -b -mUbuntu/amd64 Build Daemon >../fastx-toolkit_0.0.14-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build fastx-toolkit-0.0.14 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20140112-1110 Publishing debug debs. chroot-autobuild/build/buildd/fastx-toolkit_0.0.14-1_i386.deb: new debian package, version 2.0. size 84258 bytes: control archive= 2185 bytes. 1152 bytes, 20 lines control 3344 bytes, 46 lines md5sums Package: fastx-toolkit Version: 0.0.14-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 383 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgtextutils0 (>= 0.7), libstdc++6 (>= 4.8), libgd-graph-perl, libperlio-gzip-perl Section: science Priority: optional Homepage: http://hannonlab.cshl.edu/fastx_toolkit/ Description: FASTQ/A short nucleotide reads pre-processing tools The FASTX-Toolkit is a collection of command line tools for preprocessing short nucleotide reads in FASTA and FASTQ formats, usually produced by Next-Generation sequencing machines. The main processing of such FASTA/FASTQ files is mapping (aligning) the sequences to reference genomes or other databases using specialized programs like BWA, Bowtie and many others. However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome—manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks. chroot-autobuild/build/buildd/fastx-toolkit_0.0.14-1_i386.deb: drwxr-xr-x root/root 0 2014-01-12 11:10 ./ drwxr-xr-x root/root 0 2014-01-12 11:10 ./usr/ drwxr-xr-x root/root 0 2014-01-12 11:10 ./usr/bin/ -rwxr-xr-x root/root 5907 2014-01-12 11:10 ./usr/bin/fastx_nucleotide_distribution_graph.sh -rwxr-xr-x root/root 17952 2014-01-12 11:10 ./usr/bin/fastq_quality_filter -rwxr-xr-x root/root 6080 2014-01-12 11:10 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh -rwxr-xr-x root/root 17980 2014-01-12 11:10 ./usr/bin/fastx_quality_stats -rwxr-xr-x root/root 22232 2014-01-12 11:10 ./usr/bin/fastx_collapser -rwxr-xr-x root/root 13852 2014-01-12 11:10 ./usr/bin/fastx_artifacts_filter -rwxr-xr-x root/root 13956 2014-01-12 11:10 ./usr/bin/fasta_formatter -rwxr-xr-x root/root 38784 2014-01-12 11:10 ./usr/bin/fastx_clipper -rwxr-xr-x root/root 13856 2014-01-12 11:10 ./usr/bin/fastx_reverse_complement -rwxr-xr-x root/root 13856 2014-01-12 11:10 ./usr/bin/fastq_quality_converter -rwxr-xr-x root/root 13860 2014-01-12 11:10 ./usr/bin/fastq_quality_trimmer -rwxr-xr-x root/root 13860 2014-01-12 11:10 ./usr/bin/fastx_renamer -rwxr-xr-x root/root 2775 2014-01-12 11:10 ./usr/bin/fasta_clipping_histogram.pl -rwxr-xr-x root/root 13860 2014-01-12 11:10 ./usr/bin/fastq_masker -rwxr-xr-x root/root 13860 2014-01-12 11:10 ./usr/bin/fastq_to_fasta -rwxr-xr-x root/root 5391 2014-01-12 11:10 ./usr/bin/fastq_quality_boxplot_graph.sh -rwxr-xr-x root/root 13852 2014-01-12 11:10 ./usr/bin/fasta_nucleotide_changer -rwxr-xr-x root/root 22268 2014-01-12 11:10 ./usr/bin/fastx_uncollapser -rwxr-xr-x root/root 17956 2014-01-12 11:10 ./usr/bin/fastx_trimmer -rwxr-xr-x root/root 13942 2014-01-12 11:10 ./usr/bin/fastx_barcode_splitter.pl drwxr-xr-x root/root 0 2014-01-12 11:10 ./usr/share/ drwxr-xr-x root/root 0 2014-01-12 11:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-01-12 11:10 ./usr/share/doc/fastx-toolkit/ -rw-r--r-- root/root 372 2014-01-05 21:17 ./usr/share/doc/fastx-toolkit/THANKS -rw-r--r-- root/root 1250 2014-01-12 06:52 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz -rw-r--r-- root/root 482 2014-01-12 06:38 ./usr/share/doc/fastx-toolkit/README.Debian -rw-r--r-- root/root 37703 2014-01-12 06:51 ./usr/share/doc/fastx-toolkit/copyright -rw-r--r-- root/root 3736 2014-01-05 21:17 ./usr/share/doc/fastx-toolkit/README.gz -rw-r--r-- root/root 364 2014-01-12 06:52 ./usr/share/doc/fastx-toolkit/NEWS.Debian.gz drwxr-xr-x root/root 0 2014-01-12 11:10 ./usr/share/man/ drwxr-xr-x root/root 0 2014-01-12 11:10 ./usr/share/man/man1/ -rw-r--r-- root/root 512 2014-01-12 11:10 ./usr/share/man/man1/fastx_collapser.1.gz -rw-r--r-- root/root 2204 2014-01-12 11:10 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz -rw-r--r-- root/root 596 2014-01-12 11:10 ./usr/share/man/man1/fastx_uncollapser.1.gz -rw-r--r-- root/root 525 2014-01-12 11:10 ./usr/share/man/man1/fastx_reverse_complement.1.gz -rw-r--r-- root/root 613 2014-01-12 11:10 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz -rw-r--r-- root/root 590 2014-01-12 11:10 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz -rw-r--r-- root/root 605 2014-01-12 11:10 ./usr/share/man/man1/fastx_artifacts_filter.1.gz -rw-r--r-- root/root 564 2014-01-12 11:10 ./usr/share/man/man1/fastq_quality_converter.1.gz -rw-r--r-- root/root 911 2014-01-12 11:10 ./usr/share/man/man1/fastx_clipper.1.gz -rw-r--r-- root/root 695 2014-01-12 11:10 ./usr/share/man/man1/fastq_masker.1.gz -rw-r--r-- root/root 564 2014-01-12 11:10 ./usr/share/man/man1/fastx_renamer.1.gz -rw-r--r-- root/root 668 2014-01-12 11:10 ./usr/share/man/man1/fastq_to_fasta.1.gz -rw-r--r-- root/root 653 2014-01-12 11:10 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz -rw-r--r-- root/root 646 2014-01-12 11:10 ./usr/share/man/man1/fastx_trimmer.1.gz -rw-r--r-- root/root 666 2014-01-12 11:10 ./usr/share/man/man1/fastq_quality_filter.1.gz -rw-r--r-- root/root 935 2014-01-12 11:10 ./usr/share/man/man1/fastx_quality_stats.1.gz -rw-r--r-- root/root 471 2014-01-12 11:10 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz -rw-r--r-- root/root 583 2014-01-12 11:10 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz -rw-r--r-- root/root 728 2014-01-12 11:10 ./usr/share/man/man1/fastq_quality_trimmer.1.gz -rw-r--r-- root/root 929 2014-01-12 11:10 ./usr/share/man/man1/fasta_formatter.1.gz lrwxrwxrwx root/root 0 2014-01-12 11:10 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz fastx-toolkit_0.0.14-1_i386.changes: Format: 1.8 Date: Sun, 12 Jan 2014 15:52:14 +0900 Source: fastx-toolkit Binary: fastx-toolkit Architecture: i386 Version: 0.0.14-1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Charles Plessy Description: fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools Closes: 715887 715888 Changes: fastx-toolkit (0.0.14-1) unstable; urgency=low . 53f820d New upstream release (Closes: 715887, 715888) 6a99f79 Default source package branch is now ‘debian/unstable’. 5028533 Conforms with the Policy version 3.9.5. 450b05d debian/watch: follow GitHub. d2de0ee Build-depend on libtool. ee94435 debian/rules: adapt for building from Git repository. 6d9b972 Document backward-incompatible changes in debian/NEWS. d0c8ed5 Mangle upstream version number for release candidates. 58a04c9 Document the repository structure in ‘debian/gbp.conf’. 4786502 Build-depend on automake. Checksums-Sha1: 18debca70b104d2d806d20aafb7b6ad258784099 84258 fastx-toolkit_0.0.14-1_i386.deb Checksums-Sha256: c0a5ae8c36cf8e86a32e7d0882ffa8340d8764ab29f85265ca9d509078f9051e 84258 fastx-toolkit_0.0.14-1_i386.deb Files: 396641db404c32cff76c895ea35dcd1b 84258 science optional fastx-toolkit_0.0.14-1_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140112-1110 Build needed 00:00:35, 9304k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5449537'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5449537/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5449537'] Unmounting chroot for build PACKAGEBUILD-5449537... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5449537'] Removing build PACKAGEBUILD-5449537