https://launchpad.net/ubuntu/+source/fastx-toolkit/0.0.14-6/+build/15627326 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-013 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:16:02 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 9 Nov 08:59:27 ntpdate[1801]: adjust time server 10.211.37.1 offset 0.000271 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15627326 /home/buildd/filecache-default/b71572c9405b6ce6ff1d1ad001cf764bb07f52ae Creating target for build PACKAGEBUILD-15627326 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15627326 Starting target for build PACKAGEBUILD-15627326 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15627326 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15627326 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15627326 Updating target for build PACKAGEBUILD-15627326 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1017 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [8764 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5043 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [166 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [89.4 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [276 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [185 kB] Fetched 16.5 MB in 6s (2654 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 libmpx2 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 56 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 46.7 MB of archives. After this operation, 48.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main amd64 base-files amd64 10.1ubuntu8 [60.1 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 dash amd64 0.5.10.2-1 [89.3 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 findutils amd64 4.6.0+git+20181018-1 [295 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 hostname amd64 3.21 [11.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm6 amd64 1.18.1-1 [27.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm-compat4 amd64 1.18.1-1 [6148 B] Get:8 http://ftpmaster.internal/ubuntu disco/main amd64 libperl5.28 amd64 5.28.0-3 [3804 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 perl amd64 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 perl-base amd64 5.28.0-3 [1510 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.2 [672 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 sed amd64 4.5-2 [186 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 systemd-sysv amd64 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 libapparmor1 amd64 2.12-4ubuntu10 [29.9 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main amd64 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 libcap-ng0 amd64 0.7.9-1build1 [10.9 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu3 [38.8 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libgpg-error0 amd64 1.32-3 [56.0 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libkmod2 amd64 25-1ubuntu1.1 [41.8 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 systemd amd64 239-7ubuntu10.1 [2968 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsystemd0 amd64 239-7ubuntu10.1 [211 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 init amd64 1.55 [6480 B] Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 libquadmath0 amd64 8.2.0-9ubuntu1 [134 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 libubsan1 amd64 8.2.0-9ubuntu1 [121 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 libitm1 amd64 8.2.0-9ubuntu1 [28.1 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 libasan5 amd64 8.2.0-9ubuntu1 [364 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-8-base amd64 8.2.0-9ubuntu1 [18.6 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++6 amd64 8.2.0-9ubuntu1 [399 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 libgomp1 amd64 8.2.0-9ubuntu1 [76.4 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 libatomic1 amd64 8.2.0-9ubuntu1 [9076 B] Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 liblsan0 amd64 8.2.0-9ubuntu1 [132 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libtsan0 amd64 8.2.0-9ubuntu1 [288 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libmpx2 amd64 8.2.0-9ubuntu1 [11.7 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 cpp-8 amd64 8.2.0-9ubuntu1 [7222 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libcc1-0 amd64 8.2.0-9ubuntu1 [39.5 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-8 amd64 8.2.0-9ubuntu1 [7999 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 g++-8 amd64 8.2.0-9ubuntu1 [8115 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++-8-dev amd64 8.2.0-9ubuntu1 [1538 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc-8-dev amd64 8.2.0-9ubuntu1 [2304 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc1 amd64 1:8.2.0-9ubuntu1 [40.7 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 libbinutils amd64 2.31.1-7ubuntu1 [483 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-common amd64 2.31.1-7ubuntu1 [194 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 binutils amd64 2.31.1-7ubuntu1 [3392 B] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-7ubuntu1 [1829 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 libselinux1 amd64 2.8-1build2 [68.6 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage-common all 2.8-1build2 [6892 B] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage1 amd64 2.8-1build2 [85.1 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libudev1 amd64 239-7ubuntu10.1 [53.9 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libseccomp2 amd64 2.3.3-3ubuntu2 [38.9 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libdevmapper1.02.1 amd64 2:1.02.145-4.1ubuntu4 [127 kB] Get:52 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 dmsetup amd64 2:1.02.145-4.1ubuntu4 [74.6 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsqlite3-0 amd64 3.25.3-1 [529 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018g-1 [188 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 g++ amd64 4:8.2.0-2ubuntu2 [1608 B] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 gcc amd64 4:8.2.0-2ubuntu2 [5224 B] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 cpp amd64 4:8.2.0-2ubuntu2 [27.6 kB] Get:58 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.18.0-11.12 [1039 kB] Get:59 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 lockfile-progs amd64 0.1.18 [9872 B] debconf: delaying package configuration, since apt-utils is 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Universal Time is now: Fri Nov 9 09:00:18 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.55) ... Setting up libtsan0:amd64 (8.2.0-9ubuntu1) ... Setting up linux-libc-dev:amd64 (4.18.0-11.12) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.145-4.1ubuntu4) ... Setting up liblsan0:amd64 (8.2.0-9ubuntu1) ... Setting up libgdbm6:amd64 (1.18.1-1) ... Setting up binutils-common:amd64 (2.31.1-7ubuntu1) ... Setting up libmpx2:amd64 (8.2.0-9ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:amd64 (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:amd64 (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:amd64 (8.2.0-9ubuntu1) ... Setting up libitm1:amd64 (8.2.0-9ubuntu1) ... Setting up libubsan1:amd64 (8.2.0-9ubuntu1) ... Setting up libbinutils:amd64 (2.31.1-7ubuntu1) ... Setting up libperl5.28:amd64 (5.28.0-3) ... Setting up perl (5.28.0-3) ... Setting up libgcc-8-dev:amd64 (8.2.0-9ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:amd64 (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15627326 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-15627326 --arch=amd64 --dist=disco-proposed --nolog -A fastx-toolkit_0.0.14-6.dsc Initiating build PACKAGEBUILD-15627326 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:16:02 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-013.buildd +==============================================================================+ | fastx-toolkit 0.0.14-6 (amd64) 09 Nov 2018 09:00 | +==============================================================================+ Package: fastx-toolkit Version: 0.0.14-6 Source Version: 0.0.14-6 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/fastx-toolkit-pFaA44/fastx-toolkit-0.0.14' with '<>' I: NOTICE: Log filtering will replace 'build/fastx-toolkit-pFaA44' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15627326/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- fastx-toolkit_0.0.14-6.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-yoDGrt/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-yoDGrt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-yoDGrt/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-yoDGrt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-yoDGrt/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-yoDGrt/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (60.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-yoDGrt/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14539 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libtool, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl Filtered Build-Depends: debhelper (>= 11~), libtool, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl dpkg-deb: building package 'sbuild-build-depends-fastx-toolkit-dummy' in '/<>/resolver-Q_NNwk/apt_archive/sbuild-build-depends-fastx-toolkit-dummy.deb'. Ign:1 copy:/<>/resolver-Q_NNwk/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Q_NNwk/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Q_NNwk/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Q_NNwk/apt_archive ./ Sources [263 B] Get:5 copy:/<>/resolver-Q_NNwk/apt_archive ./ Packages [582 B] Fetched 2964 B in 0s (60.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install fastx-toolkit build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd-graph-perl libgd-perl libgd-text-perl libgd3 libglib2.0-0 libgtextutils-dev libgtextutils0v5 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 liblocale-gettext-perl libmagic-mgc libmagic1 libperlio-gzip-perl libpipeline1 libsigsegv2 libtiff5 libtool libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db pkg-config po-debconf ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff fonts-dustin libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd-graph-perl libgd-perl libgd-text-perl libgd3 libglib2.0-0 libgtextutils-dev libgtextutils0v5 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 liblocale-gettext-perl libmagic-mgc libmagic1 libperlio-gzip-perl libpipeline1 libsigsegv2 libtiff5 libtool libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db pkg-config po-debconf sbuild-build-depends-fastx-toolkit-dummy ucf 0 upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 20.6 MB of archives. After this operation, 75.8 MB of additional disk space will be used. 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disco/universe amd64 help2man amd64 1.47.6 [162 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libfreetype6 amd64 2.8.1-2ubuntu2 [335 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libfontconfig1 amd64 2.13.0-5ubuntu3 [112 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8 amd64 2.0.0-0ubuntu2 [117 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libtiff5 amd64 4.0.9+git181026-1 [157 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 libgd3 amd64 2.2.5-4ubuntu1 [118 kB] Get:52 http://ftpmaster.internal/ubuntu disco/universe amd64 libgtextutils0v5 amd64 0.7-5 [19.4 kB] Get:53 http://ftpmaster.internal/ubuntu disco/universe amd64 libgtextutils-dev amd64 0.7-5 [23.1 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 libperlio-gzip-perl amd64 0.19-1build4 [14.4 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 libgd-perl amd64 2.66-1build2 [163 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libgd-text-perl all 0.86-9 [36.3 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 libgd-graph-perl all 1.48-2 [379 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.6 MB in 1s (14.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14539 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3build3_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3build3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../01-libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../02-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../03-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../04-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../05-libpipeline1_1.5.0-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-2) ... 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Setting up libelf1:amd64 (0.170-0.5.0ubuntu1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.58.1-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-8) ... Setting up libjpeg-turbo8:amd64 (2.0.0-0ubuntu2) ... Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up m4 (1.4.18-1ubuntu1) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up ucf (3.0038) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7ubuntu2) ... Setting up libfreetype6:amd64 (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:amd64 (1:5.34-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libgtextutils-dev:amd64 (0.7-5) ... Setting up liblocale-gettext-perl (1.07-3build3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-8) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up gettext (0.19.8.1-8) ... Setting up libtiff5:amd64 (4.0.9+git181026-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.6) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:amd64 (1.13.1-1) ... Setting up libtool (2.4.6-6) ... Setting up libfontconfig1:amd64 (2.13.0-5ubuntu3) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libgd3:amd64 (2.2.5-4ubuntu1) ... Setting up libgd-perl (2.66-1build2) ... Setting up libgd-text-perl (0.86-9) ... Setting up libgd-graph-perl (1.48-2) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up sbuild-build-depends-fastx-toolkit-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic amd64 (x86_64) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 binutils-x86-64-linux-gnu_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-9ubuntu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.044-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.0.5ubuntu5 dpkg-dev_1.19.0.5ubuntu5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig-config_2.13.0-5ubuntu3 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-9ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-9ubuntu1 gcc-8-base_8.2.0-9ubuntu1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-2ubuntu1 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 help2man_1.47.6 hostname_3.21 init_1.55 init-system-helpers_1.55 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-7ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.0.5ubuntu5 libelf1_0.170-0.5.0ubuntu1 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.044-1 libfontconfig1_2.13.0-5ubuntu3 libfreetype6_2.8.1-2ubuntu2 libgcc-8-dev_8.2.0-9ubuntu1 libgcc1_1:8.2.0-9ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgd-graph-perl_1.48-2 libgd-perl_2.66-1build2 libgd-text-perl_0.86-9 libgd3_2.2.5-4ubuntu1 libgdbm-compat4_1.18.1-1 libgdbm5_1.14.1-6 libgdbm6_1.18.1-1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.6.4-2ubuntu1 libgomp1_8.2.0-9ubuntu1 libgpg-error0_1.32-3 libgtextutils-dev_0.7-5 libgtextutils0v5_0.7-5 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-9ubuntu1 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1.1 liblocale-gettext-perl_1.07-3build3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-9ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.2.0-9ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.0-3 libperlio-gzip-perl_0.19-1build4 libpipeline1_1.5.0-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libquadmath0_8.2.0-9ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.25.3-1 libss2_1.44.4-2 libssl1.1_1.1.1-1ubuntu2 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 libsystemd0_239-7ubuntu10.1 libtasn1-6_4.13-3 libtiff5_4.0.9+git181026-1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtsan0_8.2.0-9ubuntu1 libubsan1_8.2.0-9ubuntu1 libudev1_239-7ubuntu10.1 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-7ubuntu2 libxpm4_1:3.5.12-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastx-toolkit-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Sep 23 15:15:49 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.14-6.dsc dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.14 dpkg-source: info: unpacking fastx-toolkit_0.0.14.orig.tar.gz dpkg-source: info: unpacking fastx-toolkit_0.0.14-6.debian.tar.xz dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying Q_option_documentation.patch dpkg-source: info: applying reproducible_build.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15627326 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15627326 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15627326 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package fastx-toolkit dpkg-buildpackage: info: source version 0.0.14-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build fastx-toolkit-0.0.14 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/fastx-toolkit.substvars debian/files rm -fr -- debian/fastx-toolkit/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:20: installing 'config/compile' configure.ac:22: installing 'config/config.guess' configure.ac:22: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing './INSTALL' src/fasta_formatter/Makefile.am: installing 'config/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' ./reconf - libtoolize. - aclocal. - autoconf. - autoheader. - automake. dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long int... yes checking for ISO C++ TR1 include files... yes checking whether g++ supports C++11 features by default... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTEXTUTILS... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/libfastx/Makefile config.status: creating src/fastx_clipper/Makefile config.status: creating src/fastq_to_fasta/Makefile config.status: creating src/fastx_quality_stats/Makefile config.status: creating src/fastq_quality_converter/Makefile config.status: creating src/fastx_trimmer/Makefile config.status: creating src/fastq_quality_filter/Makefile config.status: creating src/fastq_quality_trimmer/Makefile config.status: creating src/fastx_artifacts_filter/Makefile config.status: creating src/fastx_reverse_complement/Makefile config.status: creating src/fastx_collapser/Makefile config.status: creating src/fastx_uncollapser/Makefile config.status: creating src/seqalign_test/Makefile config.status: creating src/fasta_formatter/Makefile config.status: creating src/fasta_nucleotide_changer/Makefile config.status: creating src/fastx_renamer/Makefile config.status: creating src/fastq_masker/Makefile config.status: creating galaxy/Makefile config.status: creating galaxy/tools/Makefile config.status: creating galaxy/tools/fastx_toolkit/Makefile config.status: creating galaxy/test-data/Makefile config.status: creating galaxy/static/Makefile config.status: creating galaxy/static/fastx_icons/Makefile config.status: creating galaxy/tool-data/Makefile config.status: creating scripts/Makefile config.status: creating build_scripts/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' dh_auto_build make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in m4 make[3]: Entering directory '/<>/m4' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/m4' Making all in src make[3]: Entering directory '/<>/src' Making all in libfastx make[4]: Entering directory '/<>/src/libfastx' gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o chomp.o chomp.c gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx.o fastx.c gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_args.o fastx_args.c g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp rm -f libfastx.a ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libfastx.a make[4]: Leaving directory '/<>/src/libfastx' Making all in fastx_clipper make[4]: Entering directory '/<>/src/fastx_clipper' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastx_clipper' Making all in fastx_trimmer make[4]: Entering directory '/<>/src/fastx_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_trimmer.o fastx_trimmer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastx_trimmer' Making all in fastx_quality_stats make[4]: Entering directory '/<>/src/fastx_quality_stats' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_quality_stats.o fastx_quality_stats.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastx_quality_stats' Making all in fastq_quality_converter make[4]: Entering directory '/<>/src/fastq_quality_converter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_converter.o fastq_quality_converter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastq_quality_converter' Making all in fastq_to_fasta make[4]: Entering directory '/<>/src/fastq_to_fasta' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_to_fasta.o fastq_to_fasta.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastq_to_fasta' Making all in fastq_quality_filter make[4]: Entering directory '/<>/src/fastq_quality_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_filter.o fastq_quality_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastq_quality_filter' Making all in fastq_quality_trimmer make[4]: Entering directory '/<>/src/fastq_quality_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_trimmer.o fastq_quality_trimmer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastq_quality_trimmer' Making all in fastx_artifacts_filter make[4]: Entering directory '/<>/src/fastx_artifacts_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_artifacts_filter.o fastx_artifacts_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastx_artifacts_filter' Making all in fastx_reverse_complement make[4]: Entering directory '/<>/src/fastx_reverse_complement' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_reverse_complement.o fastx_reverse_complement.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastx_reverse_complement' Making all in fastx_collapser make[4]: Entering directory '/<>/src/fastx_collapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastx_collapser' Making all in fastx_uncollapser make[4]: Entering directory '/<>/src/fastx_uncollapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastx_uncollapser' Making all in seqalign_test make[4]: Entering directory '/<>/src/seqalign_test' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o seqalign_test seqalign_test.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o seqalign_test seqalign_test.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/seqalign_test' Making all in fasta_formatter make[4]: Entering directory '/<>/src/fasta_formatter' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fasta_formatter' Making all in fasta_nucleotide_changer make[4]: Entering directory '/<>/src/fasta_nucleotide_changer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_nucleotide_changer.o fasta_nucleotide_changer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fasta_nucleotide_changer' Making all in fastx_renamer make[4]: Entering directory '/<>/src/fastx_renamer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_renamer.o fastx_renamer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastx_renamer' Making all in fastq_masker make[4]: Entering directory '/<>/src/fastq_masker' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_masker.o fastq_masker.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastq_masker fastq_masker.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_masker fastq_masker.o ../libfastx/libfastx.a make[4]: Leaving directory '/<>/src/fastq_masker' make[4]: Entering directory '/<>/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' Making all in doc make[3]: Entering directory '/<>/doc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/doc' Making all in galaxy make[3]: Entering directory '/<>/galaxy' Making all in tools make[4]: Entering directory '/<>/galaxy/tools' Making all in fastx_toolkit make[5]: Entering directory '/<>/galaxy/tools/fastx_toolkit' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/galaxy/tools/fastx_toolkit' make[5]: Entering directory '/<>/galaxy/tools' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/galaxy/tools' make[4]: Leaving directory '/<>/galaxy/tools' Making all in test-data make[4]: Entering directory '/<>/galaxy/test-data' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/galaxy/test-data' Making all in static make[4]: Entering directory '/<>/galaxy/static' Making all in fastx_icons make[5]: Entering directory '/<>/galaxy/static/fastx_icons' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/galaxy/static/fastx_icons' make[5]: Entering directory '/<>/galaxy/static' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/galaxy/static' make[4]: Leaving directory '/<>/galaxy/static' Making all in tool-data make[4]: Entering directory '/<>/galaxy/tool-data' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/galaxy/tool-data' make[4]: Entering directory '/<>/galaxy' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/galaxy' make[3]: Leaving directory '/<>/galaxy' Making all in scripts make[3]: Entering directory '/<>/scripts' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/scripts' Making all in build_scripts make[3]: Entering directory '/<>/build_scripts' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/build_scripts' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in m4 make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/m4' Making check in src make[2]: Entering directory '/<>/src' Making check in libfastx make[3]: Entering directory '/<>/src/libfastx' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/libfastx' Making check in fastx_clipper make[3]: Entering directory '/<>/src/fastx_clipper' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastx_clipper' Making check in fastx_trimmer make[3]: Entering directory '/<>/src/fastx_trimmer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastx_trimmer' Making check in fastx_quality_stats make[3]: Entering directory '/<>/src/fastx_quality_stats' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastx_quality_stats' Making check in fastq_quality_converter make[3]: Entering directory '/<>/src/fastq_quality_converter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastq_quality_converter' Making check in fastq_to_fasta make[3]: Entering directory '/<>/src/fastq_to_fasta' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastq_to_fasta' Making check in fastq_quality_filter make[3]: Entering directory '/<>/src/fastq_quality_filter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastq_quality_filter' Making check in fastq_quality_trimmer make[3]: Entering directory '/<>/src/fastq_quality_trimmer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastq_quality_trimmer' Making check in fastx_artifacts_filter make[3]: Entering directory '/<>/src/fastx_artifacts_filter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastx_artifacts_filter' Making check in fastx_reverse_complement make[3]: Entering directory '/<>/src/fastx_reverse_complement' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastx_reverse_complement' Making check in fastx_collapser make[3]: Entering directory '/<>/src/fastx_collapser' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastx_collapser' Making check in fastx_uncollapser make[3]: Entering directory '/<>/src/fastx_uncollapser' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastx_uncollapser' Making check in seqalign_test make[3]: Entering directory '/<>/src/seqalign_test' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/seqalign_test' Making check in fasta_formatter make[3]: Entering directory '/<>/src/fasta_formatter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fasta_formatter' Making check in fasta_nucleotide_changer make[3]: Entering directory '/<>/src/fasta_nucleotide_changer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fasta_nucleotide_changer' Making check in fastx_renamer make[3]: Entering directory '/<>/src/fastx_renamer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastx_renamer' Making check in fastq_masker make[3]: Entering directory '/<>/src/fastq_masker' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/fastq_masker' make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making check in doc make[2]: Entering directory '/<>/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/doc' Making check in galaxy make[2]: Entering directory '/<>/galaxy' Making check in tools make[3]: Entering directory '/<>/galaxy/tools' Making check in fastx_toolkit make[4]: Entering directory '/<>/galaxy/tools/fastx_toolkit' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/galaxy/tools/fastx_toolkit' make[4]: Entering directory '/<>/galaxy/tools' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>/galaxy/tools' make[3]: Leaving directory '/<>/galaxy/tools' Making check in test-data make[3]: Entering directory '/<>/galaxy/test-data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/galaxy/test-data' Making check in static make[3]: Entering directory '/<>/galaxy/static' Making check in fastx_icons make[4]: Entering directory '/<>/galaxy/static/fastx_icons' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/galaxy/static/fastx_icons' make[4]: Entering directory '/<>/galaxy/static' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>/galaxy/static' make[3]: Leaving directory '/<>/galaxy/static' Making check in tool-data make[3]: Entering directory '/<>/galaxy/tool-data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/galaxy/tool-data' make[3]: Entering directory '/<>/galaxy' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/galaxy' make[2]: Leaving directory '/<>/galaxy' Making check in scripts make[2]: Entering directory '/<>/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/scripts' Making check in build_scripts make[2]: Entering directory '/<>/build_scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/build_scripts' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep rm -f -- debian/fastx-toolkit.substvars rm -fr -- debian/.debhelper/generated/fastx-toolkit/ debian/fastx-toolkit/ debian/tmp/ dh_auto_install make -j1 install DESTDIR=/<>/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in m4 make[2]: Entering directory '/<>/m4' make[3]: Entering directory '/<>/m4' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/share/aclocal' /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_compile_stdcxx_11.m4 ax_cxx_header_stdcxx_tr1.m4 '/<>/debian/fastx-toolkit/usr/share/aclocal' make[3]: Leaving directory '/<>/m4' make[2]: Leaving directory '/<>/m4' Making install in src make[2]: Entering directory '/<>/src' Making install in libfastx make[3]: Entering directory '/<>/src/libfastx' make[4]: Entering directory '/<>/src/libfastx' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/libfastx' make[3]: Leaving directory '/<>/src/libfastx' Making install in fastx_clipper make[3]: Entering directory '/<>/src/fastx_clipper' make[4]: Entering directory '/<>/src/fastx_clipper' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_clipper /<>/debian/fastx-toolkit/usr/bin/fastx_clipper make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastx_clipper' make[3]: Leaving directory '/<>/src/fastx_clipper' Making install in fastx_trimmer make[3]: Entering directory '/<>/src/fastx_trimmer' make[4]: Entering directory '/<>/src/fastx_trimmer' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_trimmer /<>/debian/fastx-toolkit/usr/bin/fastx_trimmer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastx_trimmer' make[3]: Leaving directory '/<>/src/fastx_trimmer' Making install in fastx_quality_stats make[3]: Entering directory '/<>/src/fastx_quality_stats' make[4]: Entering directory '/<>/src/fastx_quality_stats' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_quality_stats /<>/debian/fastx-toolkit/usr/bin/fastx_quality_stats make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastx_quality_stats' make[3]: Leaving directory '/<>/src/fastx_quality_stats' Making install in fastq_quality_converter make[3]: Entering directory '/<>/src/fastq_quality_converter' make[4]: Entering directory '/<>/src/fastq_quality_converter' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_converter /<>/debian/fastx-toolkit/usr/bin/fastq_quality_converter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastq_quality_converter' make[3]: Leaving directory '/<>/src/fastq_quality_converter' Making install in fastq_to_fasta make[3]: Entering directory '/<>/src/fastq_to_fasta' make[4]: Entering directory '/<>/src/fastq_to_fasta' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_to_fasta /<>/debian/fastx-toolkit/usr/bin/fastq_to_fasta make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastq_to_fasta' make[3]: Leaving directory '/<>/src/fastq_to_fasta' Making install in fastq_quality_filter make[3]: Entering directory '/<>/src/fastq_quality_filter' make[4]: Entering directory '/<>/src/fastq_quality_filter' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_filter /<>/debian/fastx-toolkit/usr/bin/fastq_quality_filter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastq_quality_filter' make[3]: Leaving directory '/<>/src/fastq_quality_filter' Making install in fastq_quality_trimmer make[3]: Entering directory '/<>/src/fastq_quality_trimmer' make[4]: Entering directory '/<>/src/fastq_quality_trimmer' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_trimmer /<>/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastq_quality_trimmer' make[3]: Leaving directory '/<>/src/fastq_quality_trimmer' Making install in fastx_artifacts_filter make[3]: Entering directory '/<>/src/fastx_artifacts_filter' make[4]: Entering directory '/<>/src/fastx_artifacts_filter' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_artifacts_filter /<>/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastx_artifacts_filter' make[3]: Leaving directory '/<>/src/fastx_artifacts_filter' Making install in fastx_reverse_complement make[3]: Entering directory '/<>/src/fastx_reverse_complement' make[4]: Entering directory '/<>/src/fastx_reverse_complement' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_reverse_complement /<>/debian/fastx-toolkit/usr/bin/fastx_reverse_complement make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastx_reverse_complement' make[3]: Leaving directory '/<>/src/fastx_reverse_complement' Making install in fastx_collapser make[3]: Entering directory '/<>/src/fastx_collapser' make[4]: Entering directory '/<>/src/fastx_collapser' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_collapser /<>/debian/fastx-toolkit/usr/bin/fastx_collapser make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastx_collapser' make[3]: Leaving directory '/<>/src/fastx_collapser' Making install in fastx_uncollapser make[3]: Entering directory '/<>/src/fastx_uncollapser' make[4]: Entering directory '/<>/src/fastx_uncollapser' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_uncollapser /<>/debian/fastx-toolkit/usr/bin/fastx_uncollapser make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastx_uncollapser' make[3]: Leaving directory '/<>/src/fastx_uncollapser' Making install in seqalign_test make[3]: Entering directory '/<>/src/seqalign_test' make[4]: Entering directory '/<>/src/seqalign_test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/seqalign_test' make[3]: Leaving directory '/<>/src/seqalign_test' Making install in fasta_formatter make[3]: Entering directory '/<>/src/fasta_formatter' make[4]: Entering directory '/<>/src/fasta_formatter' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_formatter /<>/debian/fastx-toolkit/usr/bin/fasta_formatter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fasta_formatter' make[3]: Leaving directory '/<>/src/fasta_formatter' Making install in fasta_nucleotide_changer make[3]: Entering directory '/<>/src/fasta_nucleotide_changer' make[4]: Entering directory '/<>/src/fasta_nucleotide_changer' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_nucleotide_changer /<>/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fasta_nucleotide_changer' make[3]: Leaving directory '/<>/src/fasta_nucleotide_changer' Making install in fastx_renamer make[3]: Entering directory '/<>/src/fastx_renamer' make[4]: Entering directory '/<>/src/fastx_renamer' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_renamer /<>/debian/fastx-toolkit/usr/bin/fastx_renamer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastx_renamer' make[3]: Leaving directory '/<>/src/fastx_renamer' Making install in fastq_masker make[3]: Entering directory '/<>/src/fastq_masker' make[4]: Entering directory '/<>/src/fastq_masker' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/<>/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_masker /<>/debian/fastx-toolkit/usr/bin/fastq_masker make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src/fastq_masker' make[3]: Leaving directory '/<>/src/fastq_masker' make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' Making install in doc make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>/doc' Making install in galaxy make[2]: Entering directory '/<>/galaxy' Making install in tools make[3]: Entering directory '/<>/galaxy/tools' Making install in fastx_toolkit make[4]: Entering directory '/<>/galaxy/tools/fastx_toolkit' make[5]: Entering directory '/<>/galaxy/tools/fastx_toolkit' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/galaxy/tools/fastx_toolkit' make[4]: Leaving directory '/<>/galaxy/tools/fastx_toolkit' make[4]: Entering directory '/<>/galaxy/tools' make[5]: Entering directory '/<>/galaxy/tools' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/galaxy/tools' make[4]: Leaving directory '/<>/galaxy/tools' make[3]: Leaving directory '/<>/galaxy/tools' Making install in test-data make[3]: Entering directory '/<>/galaxy/test-data' make[4]: Entering directory '/<>/galaxy/test-data' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/galaxy/test-data' make[3]: Leaving directory '/<>/galaxy/test-data' Making install in static make[3]: Entering directory '/<>/galaxy/static' Making install in fastx_icons make[4]: Entering directory '/<>/galaxy/static/fastx_icons' make[5]: Entering directory '/<>/galaxy/static/fastx_icons' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/galaxy/static/fastx_icons' make[4]: Leaving directory '/<>/galaxy/static/fastx_icons' make[4]: Entering directory '/<>/galaxy/static' make[5]: Entering directory '/<>/galaxy/static' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/galaxy/static' make[4]: Leaving directory '/<>/galaxy/static' make[3]: Leaving directory '/<>/galaxy/static' Making install in tool-data make[3]: Entering directory '/<>/galaxy/tool-data' make[4]: Entering directory '/<>/galaxy/tool-data' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/galaxy/tool-data' make[3]: Leaving directory '/<>/galaxy/tool-data' make[3]: Entering directory '/<>/galaxy' make[4]: Entering directory '/<>/galaxy' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/galaxy' make[3]: Leaving directory '/<>/galaxy' make[2]: Leaving directory '/<>/galaxy' Making install in scripts make[2]: Entering directory '/<>/scripts' make[3]: Entering directory '/<>/scripts' /bin/mkdir -p '/<>/debian/fastx-toolkit/usr/bin' /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/<>/debian/fastx-toolkit/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/scripts' make[2]: Leaving directory '/<>/scripts' Making install in build_scripts make[2]: Entering directory '/<>/build_scripts' make[3]: Entering directory '/<>/build_scripts' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/build_scripts' make[2]: Leaving directory '/<>/build_scripts' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' rm -f debian/fastx-toolkit.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install install -d debian/.debhelper/generated/fastx-toolkit rm --recursive /<>/debian/fastx-toolkit/usr/share/aclocal make[1]: Leaving directory '/<>' dh_installdocs install -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./README debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit cd './galaxy/test-data/..' && find 'test-data' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./debian/README.test debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a ./debian/tests/run-unit-test debian/fastx-toolkit/usr/share/doc/fastx-toolkit chown -R 0:0 debian/fastx-toolkit/usr/share/doc chmod -R u\+rw,go=rX debian/fastx-toolkit/usr/share/doc install -p -m0644 debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian install -p -m0644 debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright rm -f debian/fastx-toolkit.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs -k NEWS install -p -m0644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian install -p -m0644 debian/NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.Debian install -p -m0644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS make[1]: Leaving directory '/<>' rm -f debian/fastx-toolkit.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/fastx-toolkit/usr/share/man/man1 # The name strings are obtained from # http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools") # and # http://hannonlab.cshl.edu/fastx_toolkit/commandline.html help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='changes the width of sequences line in a FASTA file' \ /<>/debian/fastx-toolkit/usr/bin/fasta_formatter > /<>/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convets FASTA sequences from/to RNA/DNA' \ /<>/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /<>/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name="Masks nucleotides with 'N' (or other character) based on quality" \ /<>/debian/fastx-toolkit/usr/bin/fastq_masker > /<>/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 # hmmmm: The tool `fasta_quality_converter` was NOT described at the URLs above help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Converts sequences based on quality' \ /<>/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /<>/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Filters sequences based on quality' \ /<>/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /<>/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 dh_installman debian/fastq_quality_trimmer.1 install -p -m0644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 > debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1.dh-new mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 > debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1.dh-new mv debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1.dh-new mv debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1.dh-new mv debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convert FASTQ files to FASTA files' \ /<>/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /<>/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTQ/A Artifacts Filter' \ /<>/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Clipper' \ /<>/debian/fastx-toolkit/usr/bin/fastx_clipper > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Collapser' \ /<>/debian/fastx-toolkit/usr/bin/fastx_collapser > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTX Statistics' \ /<>/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Renamer' \ /<>/debian/fastx-toolkit/usr/bin/fastx_renamer > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTQ/A Reverse Complement' \ /<>/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Trimmer' \ /<>/debian/fastx-toolkit/usr/bin/fastx_trimmer > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Uncollapser' \ /<>/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1 # Perl scripts add the full path to usage advise which needs to be removed # The script fasta_clipping_histogram.pl does not feature a '-h' option help2man --no-info --no-discard-stderr --version-string='0.0.14' -h '' \ --name='Create a Linker Clipping Information Histogram' \ /<>/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \ > /<>/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTX Barcode Splitter' \ /<>/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \ > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Solexa-Quality BoxPlot plotter' \ /<>/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /<>/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Nucleotide Distribution Plotter' \ /<>/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Nucleotide Distribution Plotter' \ /<>/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /<>/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 for man in `find /<>/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done find: ‘*.1’: No such file or directory /bin/sh: 1: cannot create /<>/debian/fastx-toolkit/usr/share/man/man1: Is a directory make[1]: Leaving directory '/<>' dh_lintian install -d debian/fastx-toolkit/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/fastx-toolkit/usr/share/lintian/overrides/fastx-toolkit dh_perl (grep -a -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl:any) > debian/fastx-toolkit.substvars.new mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars dh_link rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS ln -s changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS dh_strip_nondeterminism dh_compress cd debian/fastx-toolkit chmod a-x usr/share/doc/fastx-toolkit/NEWS.Debian usr/share/doc/fastx-toolkit/README usr/share/doc/fastx-toolkit/changelog usr/share/doc/fastx-toolkit/changelog.Debian usr/share/doc/fastx-toolkit/test-data/Makefile usr/share/doc/fastx-toolkit/test-data/Makefile.in usr/share/doc/fastx-toolkit/test-data/fasta_formatter1.fasta usr/share/doc/fastx-toolkit/test-data/fasta_formatter1.out usr/share/doc/fastx-toolkit/test-data/fasta_formatter2.out usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_uncollapser.1 gzip -9nf usr/share/doc/fastx-toolkit/NEWS.Debian usr/share/doc/fastx-toolkit/README usr/share/doc/fastx-toolkit/changelog usr/share/doc/fastx-toolkit/changelog.Debian usr/share/doc/fastx-toolkit/test-data/Makefile usr/share/doc/fastx-toolkit/test-data/Makefile.in usr/share/doc/fastx-toolkit/test-data/fasta_formatter1.fasta usr/share/doc/fastx-toolkit/test-data/fasta_formatter1.out usr/share/doc/fastx-toolkit/test-data/fasta_formatter2.out usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastx_uncollapser.1 cd '/<>' rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz ln -s changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz dh_fixperms find debian/fastx-toolkit -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastx-toolkit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastx-toolkit/usr/share/doc -type f -a -true -a ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_strip install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/11/7cc062f2617bcd64ea4f1ecd846463280e9fdb.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/11/7cc062f2617bcd64ea4f1ecd846463280e9fdb.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/11/7cc062f2617bcd64ea4f1ecd846463280e9fdb.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/11/7cc062f2617bcd64ea4f1ecd846463280e9fdb.debug debian/fastx-toolkit/usr/bin/fastq_quality_converter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ae objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ae/a6fe396ac1090c047f610289fe297f394f710e.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ae/a6fe396ac1090c047f610289fe297f394f710e.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ae/a6fe396ac1090c047f610289fe297f394f710e.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ae/a6fe396ac1090c047f610289fe297f394f710e.debug debian/fastx-toolkit/usr/bin/fastq_quality_trimmer install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a7/be8bdbb54acd3a4d69c03471cca175af0966fc.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a7/be8bdbb54acd3a4d69c03471cca175af0966fc.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a7/be8bdbb54acd3a4d69c03471cca175af0966fc.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a7/be8bdbb54acd3a4d69c03471cca175af0966fc.debug debian/fastx-toolkit/usr/bin/fastx_reverse_complement install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fasta_formatter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/87/aae42868290e88a19c73cd0b62dc45964be75e.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/87/aae42868290e88a19c73cd0b62dc45964be75e.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/87/aae42868290e88a19c73cd0b62dc45964be75e.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/87/aae42868290e88a19c73cd0b62dc45964be75e.debug debian/fastx-toolkit/usr/bin/fasta_formatter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/68/2181218df7155158bb7f6eca5d289bb1b8f977.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/68/2181218df7155158bb7f6eca5d289bb1b8f977.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/68/2181218df7155158bb7f6eca5d289bb1b8f977.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/68/2181218df7155158bb7f6eca5d289bb1b8f977.debug debian/fastx-toolkit/usr/bin/fastx_quality_stats install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fe objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_trimmer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fe/bdca06f192a2d691ae658131756d1a1a2f1424.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fe/bdca06f192a2d691ae658131756d1a1a2f1424.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fe/bdca06f192a2d691ae658131756d1a1a2f1424.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/fe/bdca06f192a2d691ae658131756d1a1a2f1424.debug debian/fastx-toolkit/usr/bin/fastx_trimmer install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_renamer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a4/380f2c400fdba78223b8a8eb8ac6db163c2fb3.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a4/380f2c400fdba78223b8a8eb8ac6db163c2fb3.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a4/380f2c400fdba78223b8a8eb8ac6db163c2fb3.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/a4/380f2c400fdba78223b8a8eb8ac6db163c2fb3.debug debian/fastx-toolkit/usr/bin/fastx_renamer install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23/9cd3cf7e3a58c22a31f089f0caea380038e783.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23/9cd3cf7e3a58c22a31f089f0caea380038e783.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23/9cd3cf7e3a58c22a31f089f0caea380038e783.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/23/9cd3cf7e3a58c22a31f089f0caea380038e783.debug debian/fastx-toolkit/usr/bin/fastq_to_fasta install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d8 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_collapser debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d8/15e573a92bf5e47344fcaae366c2f7c9d360cf.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d8/15e573a92bf5e47344fcaae366c2f7c9d360cf.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d8/15e573a92bf5e47344fcaae366c2f7c9d360cf.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d8/15e573a92bf5e47344fcaae366c2f7c9d360cf.debug debian/fastx-toolkit/usr/bin/fastx_collapser install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/43 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/43/b4e76a054f1fbaa6c28cc9d05223e665dd4746.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/43/b4e76a054f1fbaa6c28cc9d05223e665dd4746.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/43/b4e76a054f1fbaa6c28cc9d05223e665dd4746.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/43/b4e76a054f1fbaa6c28cc9d05223e665dd4746.debug debian/fastx-toolkit/usr/bin/fastq_quality_filter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8e objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8e/473184eecbfa09da42686f975ff66899fc18a0.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8e/473184eecbfa09da42686f975ff66899fc18a0.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8e/473184eecbfa09da42686f975ff66899fc18a0.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/8e/473184eecbfa09da42686f975ff66899fc18a0.debug debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_clipper debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/09/0e5703bd69a1420b2d3aadb693ee345bae53b6.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/09/0e5703bd69a1420b2d3aadb693ee345bae53b6.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/09/0e5703bd69a1420b2d3aadb693ee345bae53b6.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/09/0e5703bd69a1420b2d3aadb693ee345bae53b6.debug debian/fastx-toolkit/usr/bin/fastx_clipper install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_masker debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1a/ec6353657d86df6f0ef526d83f5b6412619599.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1a/ec6353657d86df6f0ef526d83f5b6412619599.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1a/ec6353657d86df6f0ef526d83f5b6412619599.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/1a/ec6353657d86df6f0ef526d83f5b6412619599.debug debian/fastx-toolkit/usr/bin/fastq_masker install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ef/edc4af030c4925b64eabf8a0959de7ccf01718.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ef/edc4af030c4925b64eabf8a0959de7ccf01718.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ef/edc4af030c4925b64eabf8a0959de7ccf01718.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/ef/edc4af030c4925b64eabf8a0959de7ccf01718.debug debian/fastx-toolkit/usr/bin/fastx_artifacts_filter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/31 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/31/c256d23ea195b1dbd0c3afb03b695e75f11774.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/31/c256d23ea195b1dbd0c3afb03b695e75f11774.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/31/c256d23ea195b1dbd0c3afb03b695e75f11774.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/31/c256d23ea195b1dbd0c3afb03b695e75f11774.debug debian/fastx-toolkit/usr/bin/fastx_uncollapser install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/share/doc ln -s fastx-toolkit debian/.debhelper/fastx-toolkit/dbgsym-root/usr/share/doc/fastx-toolkit-dbgsym dh_makeshlibs rm -f debian/fastx-toolkit/DEBIAN/shlibs dh_shlibdeps install -d debian/fastx-toolkit/DEBIAN dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_uncollapser dh_installdeb dh_gencontrol echo misc:Depends= >> debian/fastx-toolkit.substvars echo misc:Pre-Depends= >> debian/fastx-toolkit.substvars install -d debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN dpkg-gencontrol -pfastx-toolkit -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/.debhelper/fastx-toolkit/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=fastx-toolkit-dbgsym "-DDepends=fastx-toolkit (= \${binary:Version})" "-DDescription=debug symbols for fastx-toolkit" "-DBuild-Ids=090e5703bd69a1420b2d3aadb693ee345bae53b6 117cc062f2617bcd64ea4f1ecd846463280e9fdb 1aec6353657d86df6f0ef526d83f5b6412619599 239cd3cf7e3a58c22a31f089f0caea380038e783 31c256d23ea195b1dbd0c3afb03b695e75f11774 43b4e76a054f1fbaa6c28cc9d05223e665dd4746 682181218df7155158bb7f6eca5d289bb1b8f977 87aae42868290e88a19c73cd0b62dc45964be75e 8e473184eecbfa09da42686f975ff66899fc18a0 a4380f2c400fdba78223b8a8eb8ac6db163c2fb3 a7be8bdbb54acd3a4d69c03471cca175af0966fc aea6fe396ac1090c047f610289fe297f394f710e d815e573a92bf5e47344fcaae366c2f7c9d360cf efedc4af030c4925b64eabf8a0959de7ccf01718 febdca06f192a2d691ae658131756d1a1a2f1424" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends} chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/control dpkg-gencontrol -pfastx-toolkit -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit -UMulti-Arch dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends} chmod 0644 -- debian/fastx-toolkit/DEBIAN/control chown 0:0 -- debian/fastx-toolkit/DEBIAN/control dh_md5sums (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/fastx-toolkit/DEBIAN/md5sums chown 0:0 -- debian/fastx-toolkit/DEBIAN/md5sums (cd debian/.debhelper/fastx-toolkit/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/fastx-toolkit .. install -d debian/.debhelper/scratch-space/build-fastx-toolkit dpkg-deb --build debian/.debhelper/fastx-toolkit/dbgsym-root debian/.debhelper/scratch-space/build-fastx-toolkit INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing fastx-toolkit (in debian/fastx-toolkit); do_strip: , oemstrip: pkgstriptranslations: processing fastx-toolkit-dbgsym (in debian/.debhelper/fastx-toolkit/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fastx-toolkit/DEBIAN/control, package fastx-toolkit, directory debian/fastx-toolkit .. removing usr/share/doc/fastx-toolkit/changelog.gz pkgstripfiles: Running PNG optimization (using 4 cpus) for package fastx-toolkit ... pkgstripfiles: No PNG files. dpkg-deb: building package 'fastx-toolkit' in '../fastx-toolkit_0.0.14-6_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/fastx-toolkit/dbgsym-root/DEBIAN/control, package fastx-toolkit-dbgsym, directory debian/.debhelper/fastx-toolkit/dbgsym-root dpkg-deb: building package 'fastx-toolkit-dbgsym' in 'debian/.debhelper/scratch-space/build-fastx-toolkit/fastx-toolkit-dbgsym_0.0.14-6_amd64.deb'. Renaming fastx-toolkit-dbgsym_0.0.14-6_amd64.deb to fastx-toolkit-dbgsym_0.0.14-6_amd64.ddeb mv debian/.debhelper/scratch-space/build-fastx-toolkit/fastx-toolkit-dbgsym_0.0.14-6_amd64.deb ../fastx-toolkit-dbgsym_0.0.14-6_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../fastx-toolkit_0.0.14-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build fastx-toolkit-0.0.14 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181109-0902 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ fastx-toolkit_0.0.14-6_amd64.changes: ------------------------------------- Format: 1.8 Date: Sun, 23 Sep 2018 17:12:39 +0200 Source: fastx-toolkit Binary: fastx-toolkit Architecture: amd64 Version: 0.0.14-6 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools Changes: fastx-toolkit (0.0.14-6) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Override script-with-language-extension ( see https://lists.debian.org/debian-med/2018/06/msg00043.html ) Checksums-Sha1: 74e55edacecde2de43bc1de012fbbf36b96e4435 553812 fastx-toolkit-dbgsym_0.0.14-6_amd64.ddeb 2c99ee3c6f85f788266d9492f3b5d2f20c0908bf 5804 fastx-toolkit_0.0.14-6_amd64.buildinfo 2979a94a75958a0bd86f538b752e8c6087af6562 115000 fastx-toolkit_0.0.14-6_amd64.deb Checksums-Sha256: 1a5176f6c093584f55646d8b58a33170b61ce3ec196c7ca2c03b0cc37268797f 553812 fastx-toolkit-dbgsym_0.0.14-6_amd64.ddeb 78e7b514946f147030d7e25f38b7497fae806746f7372ba2e8a10445d250e3e8 5804 fastx-toolkit_0.0.14-6_amd64.buildinfo 4270956fad04d98df6bc53d0272395240a654cd8e218267880880d6d109ea2fb 115000 fastx-toolkit_0.0.14-6_amd64.deb Files: 38e4faa310faeab96e33972003473273 553812 debug optional fastx-toolkit-dbgsym_0.0.14-6_amd64.ddeb e4a0940341b7f77e72c44f646d3aeec5 5804 science optional fastx-toolkit_0.0.14-6_amd64.buildinfo 56c606b68e593f3319c919914c27e778 115000 science optional fastx-toolkit_0.0.14-6_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ fastx-toolkit_0.0.14-6_amd64.deb -------------------------------- new debian package, version 2.0. size 115000 bytes: control archive=3352 bytes. 1145 bytes, 20 lines control 8779 bytes, 104 lines md5sums Package: fastx-toolkit Version: 0.0.14-6 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 619 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgtextutils0v5, libstdc++6 (>= 5.2), libgd-graph-perl, libperlio-gzip-perl Section: science Priority: optional Homepage: http://hannonlab.cshl.edu/fastx_toolkit/ Description: FASTQ/A short nucleotide reads pre-processing tools The FASTX-Toolkit is a collection of command line tools for preprocessing short nucleotide reads in FASTA and FASTQ formats, usually produced by Next-Generation sequencing machines. The main processing of such FASTA/FASTQ files is mapping (aligning) the sequences to reference genomes or other databases using specialized programs like BWA, Bowtie and many others. However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome—manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks. drwxr-xr-x root/root 0 2018-09-23 15:12 ./ drwxr-xr-x root/root 0 2018-09-23 15:12 ./usr/ drwxr-xr-x root/root 0 2018-09-23 15:12 ./usr/bin/ -rwxr-xr-x root/root 2825 2018-09-23 15:12 ./usr/bin/fasta_clipping_histogram.pl -rwxr-xr-x root/root 22696 2018-09-23 15:12 ./usr/bin/fasta_formatter -rwxr-xr-x root/root 22552 2018-09-23 15:12 ./usr/bin/fasta_nucleotide_changer -rwxr-xr-x root/root 22560 2018-09-23 15:12 ./usr/bin/fastq_masker -rwxr-xr-x root/root 5391 2018-09-23 15:12 ./usr/bin/fastq_quality_boxplot_graph.sh -rwxr-xr-x root/root 22560 2018-09-23 15:12 ./usr/bin/fastq_quality_converter -rwxr-xr-x root/root 22552 2018-09-23 15:12 ./usr/bin/fastq_quality_filter -rwxr-xr-x root/root 22552 2018-09-23 15:12 ./usr/bin/fastq_quality_trimmer -rwxr-xr-x root/root 22560 2018-09-23 15:12 ./usr/bin/fastq_to_fasta -rwxr-xr-x root/root 22552 2018-09-23 15:12 ./usr/bin/fastx_artifacts_filter -rwxr-xr-x root/root 13995 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root/root 600 2018-09-23 15:12 ./usr/share/man/man1/fastx_uncollapser.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 17016 Build-Time: 117 Distribution: disco-proposed Host Architecture: amd64 Install-Time: 23 Job: fastx-toolkit_0.0.14-6.dsc Machine Architecture: amd64 Package: fastx-toolkit Package-Time: 143 Source-Version: 0.0.14-6 Space: 17016 Status: successful Version: 0.0.14-6 -------------------------------------------------------------------------------- Finished at 20181109-0902 Build needed 00:02:23, 17016k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15627326 Scanning for processes to kill in build PACKAGEBUILD-15627326