RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux beebe 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Buildd toolchain package versions: launchpad-buildd_125 python-lpbuildd_125 dpkg-dev_1.17.5ubuntu5.3. Syncing the system clock with the buildd NTP service... 24 Oct 18:31:41 ntpdate[20153]: adjust time server 10.211.37.1 offset 0.016047 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6488369', '/home/buildd/filecache-default/bf5dfa8cbd68df3e6a087b8c18a4893dff1c36e4'] Unpacking chroot for build PACKAGEBUILD-6488369 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6488369'] Mounting chroot for build PACKAGEBUILD-6488369 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6488369', 'deb http://ftpmaster.internal/ubuntu vivid main universe', 'deb http://ftpmaster.internal/ubuntu vivid-security main universe', 'deb http://ftpmaster.internal/ubuntu vivid-updates main universe', 'deb http://ftpmaster.internal/ubuntu vivid-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6488369 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6488369', 'arm64'] Updating debian chroot for build PACKAGEBUILD-6488369 Ign http://ftpmaster.internal vivid InRelease Ign http://archive-team.internal vivid InRelease Ign http://ftpmaster.internal vivid-security InRelease Ign http://archive-team.internal vivid Release.gpg Ign http://ftpmaster.internal vivid-updates InRelease Get:1 http://archive-team.internal vivid Release [728 B] Ign http://ftpmaster.internal vivid-proposed InRelease Get:2 http://ftpmaster.internal vivid Release.gpg [933 B] Get:3 http://ftpmaster.internal vivid-security Release.gpg [933 B] Get:4 http://ftpmaster.internal vivid-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal vivid-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal vivid Release [112 kB] Get:7 http://archive-team.internal vivid/main arm64 Packages Ign http://archive-team.internal vivid/main Translation-en Get:8 http://ftpmaster.internal vivid-security Release [59.7 kB] Get:9 http://ftpmaster.internal vivid-updates Release [59.7 kB] Get:10 http://ftpmaster.internal vivid-proposed Release [59.7 kB] Get:11 http://ftpmaster.internal vivid/main arm64 Packages [1277 kB] Get:12 http://ftpmaster.internal vivid/universe arm64 Packages [5877 kB] Get:13 http://ftpmaster.internal vivid/main Translation-en [769 kB] Get:14 http://ftpmaster.internal vivid/universe Translation-en [4273 kB] Get:15 http://ftpmaster.internal vivid-security/main arm64 Packages [14 B] Get:16 http://ftpmaster.internal vivid-security/universe arm64 Packages [14 B] Get:17 http://ftpmaster.internal vivid-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal vivid-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal vivid-updates/main arm64 Packages [14 B] Get:20 http://ftpmaster.internal vivid-updates/universe arm64 Packages [14 B] Get:21 http://ftpmaster.internal vivid-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal vivid-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal vivid-proposed/main arm64 Packages [32.5 kB] Get:24 http://ftpmaster.internal vivid-proposed/universe arm64 Packages [91.3 kB] Get:25 http://ftpmaster.internal vivid-proposed/main Translation-en [25.3 kB] Get:26 http://ftpmaster.internal vivid-proposed/universe Translation-en [159 kB] Fetched 12.8 MB in 10s (1232 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils ca-certificates cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base grep libacl1 libatomic1 libdb5.3 libgcc-4.9-dev libgcc1 libgmp10 libgomp1 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libsasl2-2 libsasl2-modules-db libstdc++-4.9-dev libstdc++6 tzdata 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 25.3 MB of archives. After this operation, 77.8 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main base-files arm64 7.2ubuntu8 [63.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main grep arm64 2.20-4 [131 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9-base arm64 4.9.1-19ubuntu1 [15.8 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++6 arm64 4.9.1-19ubuntu1 [257 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgomp1 arm64 4.9.1-19ubuntu1 [32.3 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libitm1 arm64 4.9.1-19ubuntu1 [26.2 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libatomic1 arm64 4.9.1-19ubuntu1 [6710 B] Get:8 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc-4.9-dev arm64 4.9.1-19ubuntu1 [185 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cpp-4.9 arm64 4.9.1-19ubuntu1 [3911 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid-proposed/main binutils arm64 2.24.90.20141023-1ubuntu1 [2370 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9 arm64 4.9.1-19ubuntu1 [4432 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid-proposed/main g++-4.9 arm64 4.9.1-19ubuntu1 [11.1 MB] Get:13 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++-4.9-dev arm64 4.9.1-19ubuntu1 [1100 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc1 arm64 1:4.9.1-19ubuntu1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main libgmp10 arm64 2:6.0.0+dfsg-6 [205 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main libacl1 arm64 2.2.52-2 [14.0 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libdb5.3 arm64 5.3.28-6 [562 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgssapi-krb5-2 arm64 1.12.1+dfsg-11 [97.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libkrb5-3 arm64 1.12.1+dfsg-11 [225 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libkrb5support0 arm64 1.12.1+dfsg-11 [27.8 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libk5crypto3 arm64 1.12.1+dfsg-11 [78.2 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsasl2-modules-db arm64 2.1.26.dfsg1-12 [13.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsasl2-2 arm64 2.1.26.dfsg1-12 [41.9 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main tzdata all 2014i-1 [182 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid-proposed/main ca-certificates all 20141019 [192 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.3 MB in 7s (3517 kB/s) (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu8_arm64.deb ... Unpacking base-files (7.2ubuntu8) over (7.2ubuntu7) ... Setting up base-files (7.2ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../archives/grep_2.20-4_arm64.deb ... Unpacking grep (2.20-4) over (2.20-3) ... Setting up grep (2.20-4) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../gcc-4.9-base_4.9.1-19ubuntu1_arm64.deb ... Unpacking gcc-4.9-base:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up gcc-4.9-base:arm64 (4.9.1-19ubuntu1) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-19ubuntu1_arm64.deb ... Unpacking libstdc++6:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up libstdc++6:arm64 (4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libitm1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libatomic1_4.9.1-19ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc-4.9-dev_4.9.1-19ubuntu1_arm64.deb ... Unpacking libgcc-4.9-dev:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../cpp-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking cpp-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../binutils_2.24.90.20141023-1ubuntu1_arm64.deb ... Unpacking binutils (2.24.90.20141023-1ubuntu1) over (2.24.90.20141014-0ubuntu3) ... Preparing to unpack .../gcc-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking gcc-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../g++-4.9_4.9.1-19ubuntu1_arm64.deb ... Unpacking g++-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libstdc++-4.9-dev_4.9.1-19ubuntu1_arm64.deb ... Unpacking libstdc++-4.9-dev:arm64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.1-19ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:4.9.1-19ubuntu1) over (1:4.9.1-16ubuntu6) ... Setting up libgcc1:arm64 (1:4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_arm64.deb ... Unpacking libgmp10:arm64 (2:6.0.0+dfsg-6) over (2:6.0.0+dfsg-4build1) ... Preparing to unpack .../libacl1_2.2.52-2_arm64.deb ... Unpacking libacl1:arm64 (2.2.52-2) over (2.2.52-1.1) ... Setting up libacl1:arm64 (2.2.52-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-6_arm64.deb ... Unpacking libdb5.3:arm64 (5.3.28-6) over (5.3.28-5) ... Setting up libdb5.3:arm64 (5.3.28-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11387 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-11_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-11_arm64.deb ... Unpacking libkrb5-3:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-11_arm64.deb ... Unpacking libkrb5support0:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-11_arm64.deb ... Unpacking libk5crypto3:arm64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-12_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-12_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../tzdata_2014i-1_all.deb ... Unpacking tzdata (2014i-1) over (2014h-2) ... Setting up tzdata (2014i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 24 18:32:35 UTC 2014. Universal Time is now: Fri Oct 24 18:32:35 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11390 files and directories currently installed.) Preparing to unpack .../ca-certificates_20141019_all.deb ... Unpacking ca-certificates (20141019) over (20140325) ... Setting up libgomp1:arm64 (4.9.1-19ubuntu1) ... Setting up libitm1:arm64 (4.9.1-19ubuntu1) ... Setting up libatomic1:arm64 (4.9.1-19ubuntu1) ... Setting up libgcc-4.9-dev:arm64 (4.9.1-19ubuntu1) ... Setting up libgmp10:arm64 (2:6.0.0+dfsg-6) ... Setting up cpp-4.9 (4.9.1-19ubuntu1) ... Setting up binutils (2.24.90.20141023-1ubuntu1) ... Setting up gcc-4.9 (4.9.1-19ubuntu1) ... Setting up libstdc++-4.9-dev:arm64 (4.9.1-19ubuntu1) ... Setting up g++-4.9 (4.9.1-19ubuntu1) ... Setting up libkrb5support0:arm64 (1.12.1+dfsg-11) ... Setting up libk5crypto3:arm64 (1.12.1+dfsg-11) ... Setting up libkrb5-3:arm64 (1.12.1+dfsg-11) ... Setting up libgssapi-krb5-2:arm64 (1.12.1+dfsg-11) ... Setting up libsasl2-modules-db:arm64 (2.1.26.dfsg1-12) ... Setting up libsasl2-2:arm64 (2.1.26.dfsg1-12) ... Setting up ca-certificates (20141019) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 10 added, 5 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6488369', 'arm64', 'vivid-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=vivid-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'fitgcp_0.0.20130418-2.dsc'] Initiating build PACKAGEBUILD-6488369 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Automatic build of fitgcp_0.0.20130418-2 on beebe by sbuild/arm64 1.170.5 Build started at 20141024-1832 ****************************************************************************** fitgcp_0.0.20130418-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), python, python-pysam Checking for already installed source dependencies... debhelper: missing python: missing python-pysam: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python python-pysam Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cython dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libexpat1-dev libglib2.0-0 libmagic1 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libunistring0 libxml2 man-db mime-support po-debconf python-dev python-minimal python-pyrex python2.7 python2.7-dev python2.7-minimal Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl python-all-dev The following NEW packages will be installed: bsdmainutils cython debhelper dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libexpat1-dev libglib2.0-0 libmagic1 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libunistring0 libxml2 man-db mime-support po-debconf python python-dev python-minimal python-pyrex python-pysam python2.7 python2.7-dev python2.7-minimal 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 14.4 MB of archives. After this operation, 65.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main libexpat1 arm64 2.1.0-6ubuntu1 [59.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main libmagic1 arm64 1:5.19-1ubuntu1.1 [195 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid/main libasprintf0c2 arm64 0.19.2-2ubuntu1 [6314 B] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main libglib2.0-0 arm64 2.42.0-2 [900 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main libpipeline1 arm64 1.3.1-1 [21.4 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libxml2 arm64 2.9.1+dfsg1-4ubuntu1 [473 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main groff-base arm64 1.22.2-8 [1139 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main man-db arm64 2.7.0.2-2 [836 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main libcroco3 arm64 0.6.8-3 [67.5 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7-minimal arm64 2.7.8-10ubuntu1 [332 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main mime-support all 3.55ubuntu1 [31.1 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7-stdlib arm64 2.7.8-10ubuntu1 [1723 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7 arm64 2.7.8-10ubuntu1 [887 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main libexpat1-dev arm64 2.1.0-6ubuntu1 [105 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7-dev arm64 2.7.8-10ubuntu1 [1669 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main libunistring0 arm64 0.9.3-5ubuntu3 [255 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main python2.7-minimal arm64 2.7.8-10ubuntu1 [921 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main file arm64 1:5.19-1ubuntu1.1 [20.1 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main gettext-base arm64 0.19.2-2ubuntu1 [45.8 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main python2.7 arm64 2.7.8-10ubuntu1 [204 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main python-minimal arm64 2.7.8-1 [28.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main libpython-stdlib arm64 2.7.8-1 [7716 B] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main python arm64 2.7.8-1 [137 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main cython arm64 0.21.1-1 [1312 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid/main gettext arm64 0.19.2-2ubuntu1 [792 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main po-debconf all 1.0.16+nmu3 [207 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main dh-apparmor all 2.8.98-0ubuntu2 [11.0 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main debhelper all 9.20141003ubuntu1 [726 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid/main libpython-dev arm64 2.7.8-1 [7798 B] Get:32 http://ftpmaster.internal/ubuntu/ vivid/main python2.7-dev arm64 2.7.8-10ubuntu1 [276 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main python-dev arm64 2.7.8-1 [1224 B] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main python-pyrex all 0.9.8.5-2.1ubuntu1 [181 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/universe python-pysam arm64 0.7.7-1ubuntu1 [544 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.4 MB in 12s (1192 kB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 11395 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6ubuntu1_arm64.deb ... Unpacking libexpat1:arm64 (2.1.0-6ubuntu1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1.1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.19-1ubuntu1.1) ... Selecting previously unselected package libasprintf0c2:arm64. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_arm64.deb ... Unpacking libasprintf0c2:arm64 (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../libglib2.0-0_2.42.0-2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.42.0-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../libpipeline1_1.3.1-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.3.1-1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../libxml2_2.9.1+dfsg1-4ubuntu1_arm64.deb ... 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Setting up libmagic1:arm64 (1:5.19-1ubuntu1.1) ... Setting up libasprintf0c2:arm64 (0.19.2-2ubuntu1) ... Setting up libglib2.0-0:arm64 (2.42.0-2) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.3.1-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-4ubuntu1) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:arm64 (0.6.8-3) ... Setting up libpython2.7-minimal:arm64 (2.7.8-10ubuntu1) ... Setting up mime-support (3.55ubuntu1) ... Setting up libpython2.7-stdlib:arm64 (2.7.8-10ubuntu1) ... Setting up libpython2.7:arm64 (2.7.8-10ubuntu1) ... Setting up libexpat1-dev:arm64 (2.1.0-6ubuntu1) ... Setting up libpython2.7-dev:arm64 (2.7.8-10ubuntu1) ... 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Toolchain package versions: libc6-dev_2.19-10ubuntu2 make_4.0-8 dpkg-dev_1.17.13ubuntu1 gcc-4.9_4.9.1-19ubuntu1 g++-4.9_4.9.1-19ubuntu1 binutils_2.24.90.20141023-1ubuntu1 libstdc++-4.9-dev_4.9.1-19ubuntu1 libstdc++6_4.9.1-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Tue Sep 30 11:49:08 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./fitgcp_0.0.20130418-2.dsc dpkg-source: info: extracting fitgcp in fitgcp-0.0.20130418 dpkg-source: info: unpacking fitgcp_0.0.20130418.orig.tar.xz dpkg-source: info: unpacking fitgcp_0.0.20130418-2.debian.tar.xz dpkg-buildpackage: source package fitgcp dpkg-buildpackage: source version 0.0.20130418-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build fitgcp-0.0.20130418 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean --with python2 dh_testdir dh_auto_clean dh_clean debian/rules build-arch dh build-arch --with python2 dh_testdir -a dh_auto_configure -a dh_auto_build -a dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_python2 -a dh_perl -a dh_link -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/build/buildd/fitgcp-0.0.20130418' dh_fixperms find debian -name "*.py" -exec chmod 755 \{\} \; make[1]: Leaving directory '/build/buildd/fitgcp-0.0.20130418' dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: fitgcp dh_strip debug symbol extraction: packages to act on: fitgcp dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 fitgcp has no unstripped objects, ignoring find: `/build/buildd/fitgcp-0.0.20130418/debian/fitgcp-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/fitgcp-0.0.20130418/debian/fitgcp-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package fitgcp: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 121 pkgstriptranslations: processing fitgcp (in debian/fitgcp); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/fitgcp/DEBIAN/control, package fitgcp, directory debian/fitgcp pkgstripfiles: PNG optimization for package fitgcp took 0 s dpkg-deb: warning: 'debian/fitgcp/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `fitgcp' in `../fitgcp_0.0.20130418-2_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../fitgcp_0.0.20130418-2_arm64.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build fitgcp-0.0.20130418 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20141024-1833 chroot-autobuild/build/buildd/fitgcp_0.0.20130418-2_arm64.deb: new debian package, version 2.0. size 12308 bytes: control archive=1507 bytes. 1391 bytes, 26 lines control 409 bytes, 6 lines md5sums 181 bytes, 9 lines * postinst #!/bin/sh 249 bytes, 14 lines * prerm #!/bin/sh Package: fitgcp Version: 0.0.20130418-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 80 Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-pysam Section: science Priority: optional Homepage: http://sourceforge.net/projects/fitgcp/ Description: fitting genome coverage distributions with mixture models Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for. Making this information accessible can improve the quality of sequencing experiments and quantitative analyses. . fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. chroot-autobuild/build/buildd/fitgcp_0.0.20130418-2_arm64.deb: drwxr-xr-x root/root 0 2014-10-24 18:33 ./ drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/ drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/bin/ drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/share/ drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/share/python/ drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/share/python/runtime.d/ -rwxr-xr-x root/root 133 2014-10-24 18:33 ./usr/share/python/runtime.d/fitgcp.rtupdate drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/share/doc/fitgcp/ -rw-r--r-- root/root 1832 2014-09-30 11:48 ./usr/share/doc/fitgcp/copyright -rw-r--r-- root/root 465 2014-09-30 11:48 ./usr/share/doc/fitgcp/changelog.Debian.gz -rw-r--r-- root/root 3809 2013-03-26 16:57 ./usr/share/doc/fitgcp/README.txt drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/share/fitgcp/ -rwxr-xr-x root/root 24598 2014-02-07 15:52 ./usr/share/fitgcp/fitGCP.py drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/share/man/ drwxr-xr-x root/root 0 2014-10-24 18:33 ./usr/share/man/man1/ -rw-r--r-- root/root 1159 2014-10-24 18:33 ./usr/share/man/man1/fitgcp.1.gz lrwxrwxrwx root/root 0 2014-10-24 18:33 ./usr/bin/fitgcp -> ../share/fitgcp/fitGCP.py fitgcp_0.0.20130418-2_arm64.changes: Format: 1.8 Date: Tue, 30 Sep 2014 13:46:48 +0200 Source: fitgcp Binary: fitgcp Architecture: arm64 Version: 0.0.20130418-2 Distribution: vivid-proposed Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: fitgcp - fitting genome coverage distributions with mixture models Changes: fitgcp (0.0.20130418-2) unstable; urgency=medium . [ James McCoy ] * Move debian/upstream to debian/upstream/metadata . [ Charles Plessy ] * Build-depend on python instead of python-all-dev. * Rely on ${python:Depends} for the dependency on Python. * Normalised debian/control with config-model-edit. * Conforms with Policy 3.9.6. . [ Andreas Tille ] * Assume Build-Depends: python-pysam to make implicitly clear that the package can exist only on those architectures where python-pysam is available (thanks to Charles Plessy for the hint) Checksums-Sha1: 2b0ac55c67b1e52d256b97b9878e9919aef61208 12308 fitgcp_0.0.20130418-2_arm64.deb Checksums-Sha256: b0af870b186c4bdc18a917bc6348dc2b53bf23cf56e8c34a0e28d9f66a806488 12308 fitgcp_0.0.20130418-2_arm64.deb Files: 568e0e9e814ce87a01e1af9cae4bab76 12308 science optional fitgcp_0.0.20130418-2_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20141024-1833 Build needed 00:00:09, 272k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6488369'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6488369/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6488369'] Unmounting chroot for build PACKAGEBUILD-6488369... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6488369'] Removing build PACKAGEBUILD-6488369