RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux allspice 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_125 python-lpbuildd_125 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.5. Syncing the system clock with the buildd NTP service... 24 Oct 13:44:55 ntpdate[16898]: adjust time server 10.211.37.1 offset 0.000015 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6488402', '/home/buildd/filecache-default/a665269cbd0fd566602516993cd02903b7df1cae'] Unpacking chroot for build PACKAGEBUILD-6488402 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6488402'] Mounting chroot for build PACKAGEBUILD-6488402 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6488402', 'deb http://ftpmaster.internal/ubuntu vivid main universe', 'deb http://ftpmaster.internal/ubuntu vivid-security main universe', 'deb http://ftpmaster.internal/ubuntu vivid-updates main universe', 'deb http://ftpmaster.internal/ubuntu vivid-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6488402 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6488402', 'amd64'] Updating debian chroot for build PACKAGEBUILD-6488402 Ign http://archive-team.internal vivid InRelease Ign http://ftpmaster.internal vivid InRelease Ign http://archive-team.internal vivid Release.gpg Ign http://ftpmaster.internal vivid-security InRelease Get:1 http://archive-team.internal vivid Release [728 B] Ign http://ftpmaster.internal vivid-updates InRelease Ign http://ftpmaster.internal vivid-proposed InRelease Get:2 http://ftpmaster.internal vivid Release.gpg [933 B] Get:3 http://ftpmaster.internal vivid-security Release.gpg [933 B] Get:4 http://ftpmaster.internal vivid-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal vivid-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal vivid Release [112 kB] Get:7 http://archive-team.internal vivid/main amd64 Packages Ign http://archive-team.internal vivid/main Translation-en Get:8 http://ftpmaster.internal vivid-security Release [59.7 kB] Get:9 http://ftpmaster.internal vivid-updates Release [59.7 kB] Get:10 http://ftpmaster.internal vivid-proposed Release [59.7 kB] Get:11 http://ftpmaster.internal vivid/main amd64 Packages [1330 kB] Get:12 http://ftpmaster.internal vivid/universe amd64 Packages [6178 kB] Get:13 http://ftpmaster.internal vivid/main Translation-en [769 kB] Get:14 http://ftpmaster.internal vivid/universe Translation-en [4267 kB] Get:15 http://ftpmaster.internal vivid-security/main amd64 Packages [14 B] Get:16 http://ftpmaster.internal vivid-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal vivid-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal vivid-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal vivid-updates/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal vivid-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal vivid-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal vivid-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal vivid-proposed/main amd64 Packages [49.2 kB] Get:24 http://ftpmaster.internal vivid-proposed/universe amd64 Packages [118 kB] Get:25 http://ftpmaster.internal vivid-proposed/main Translation-en [27.8 kB] Get:26 http://ftpmaster.internal vivid-proposed/universe Translation-en [118 kB] Fetched 13.2 MB in 4s (2955 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils ca-certificates cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base grep libacl1 libasan1 libatomic1 libcilkrts5 libdb5.3 libgcc-4.9-dev libgcc1 libgmp10 libgomp1 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 libquadmath0 libsasl2-2 libsasl2-modules-db libstdc++-4.9-dev libstdc++6 libtsan0 libubsan0 tzdata 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 36.8 MB of archives. After this operation, 170 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main base-files amd64 7.2ubuntu8 [63.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main grep amd64 2.20-4 [146 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libubsan0 amd64 4.9.1-19ubuntu1 [83.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libtsan0 amd64 4.9.1-19ubuntu1 [216 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9-base amd64 4.9.1-19ubuntu1 [15.6 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++6 amd64 4.9.1-19ubuntu1 [277 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgomp1 amd64 4.9.1-19ubuntu1 [38.4 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libitm1 amd64 4.9.1-19ubuntu1 [30.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libatomic1 amd64 4.9.1-19ubuntu1 [9266 B] Get:10 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libasan1 amd64 4.9.1-19ubuntu1 [198 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid-proposed/main liblsan0 amd64 4.9.1-19ubuntu1 [94.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libcilkrts5 amd64 4.9.1-19ubuntu1 [40.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libquadmath0 amd64 4.9.1-19ubuntu1 [130 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc-4.9-dev amd64 4.9.1-19ubuntu1 [2084 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cpp-4.9 amd64 4.9.1-19ubuntu1 [5019 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid-proposed/main binutils amd64 2.24.90.20141023-1ubuntu1 [2198 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9 amd64 4.9.1-19ubuntu1 [5638 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid-proposed/main g++-4.9 amd64 4.9.1-19ubuntu1 [17.5 MB] Get:19 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++-4.9-dev amd64 4.9.1-19ubuntu1 [1123 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc1 amd64 1:4.9.1-19ubuntu1 [39.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgmp10 amd64 2:6.0.0+dfsg-6 [240 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main libacl1 amd64 2.2.52-2 [16.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libdb5.3 amd64 5.3.28-6 [671 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgssapi-krb5-2 amd64 1.12.1+dfsg-11 [119 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libkrb5-3 amd64 1.12.1+dfsg-11 [270 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libkrb5support0 amd64 1.12.1+dfsg-11 [30.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libk5crypto3 amd64 1.12.1+dfsg-11 [82.4 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsasl2-modules-db amd64 2.1.26.dfsg1-12 [14.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsasl2-2 amd64 2.1.26.dfsg1-12 [49.5 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main tzdata all 2014i-1 [182 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid-proposed/main ca-certificates all 20141019 [192 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.8 MB in 1s (36.6 MB/s) (Reading database ... 11482 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu8_amd64.deb ... Unpacking base-files (7.2ubuntu8) over (7.2ubuntu7) ... Setting up base-files (7.2ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11482 files and directories currently installed.) Preparing to unpack .../archives/grep_2.20-4_amd64.deb ... Unpacking grep (2.20-4) over (2.20-3) ... Setting up grep (2.20-4) ... (Reading database ... 11482 files and directories currently installed.) Preparing to unpack .../libubsan0_4.9.1-19ubuntu1_amd64.deb ... Unpacking libubsan0:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libtsan0_4.9.1-19ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../gcc-4.9-base_4.9.1-19ubuntu1_amd64.deb ... Unpacking gcc-4.9-base:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up gcc-4.9-base:amd64 (4.9.1-19ubuntu1) ... (Reading database ... 11482 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-19ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up libstdc++6:amd64 (4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11482 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.1-19ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libitm1_4.9.1-19ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libatomic1_4.9.1-19ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libasan1_4.9.1-19ubuntu1_amd64.deb ... Unpacking libasan1:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../liblsan0_4.9.1-19ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libcilkrts5_4.9.1-19ubuntu1_amd64.deb ... Unpacking libcilkrts5:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libquadmath0_4.9.1-19ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc-4.9-dev_4.9.1-19ubuntu1_amd64.deb ... Unpacking libgcc-4.9-dev:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../cpp-4.9_4.9.1-19ubuntu1_amd64.deb ... Unpacking cpp-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../binutils_2.24.90.20141023-1ubuntu1_amd64.deb ... Unpacking binutils (2.24.90.20141023-1ubuntu1) over (2.24.90.20141014-0ubuntu3) ... Preparing to unpack .../gcc-4.9_4.9.1-19ubuntu1_amd64.deb ... Unpacking gcc-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../g++-4.9_4.9.1-19ubuntu1_amd64.deb ... Unpacking g++-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libstdc++-4.9-dev_4.9.1-19ubuntu1_amd64.deb ... Unpacking libstdc++-4.9-dev:amd64 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.1-19ubuntu1_amd64.deb ... Unpacking libgcc1:amd64 (1:4.9.1-19ubuntu1) over (1:4.9.1-16ubuntu6) ... Setting up libgcc1:amd64 (1:4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11486 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_amd64.deb ... Unpacking libgmp10:amd64 (2:6.0.0+dfsg-6) over (2:6.0.0+dfsg-4build1) ... Preparing to unpack .../libacl1_2.2.52-2_amd64.deb ... Unpacking libacl1:amd64 (2.2.52-2) over (2.2.52-1.1) ... Setting up libacl1:amd64 (2.2.52-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11486 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-6_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28-6) over (5.3.28-5) ... Setting up libdb5.3:amd64 (5.3.28-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11486 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-11_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-11_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-11_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-11_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-12_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-12_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../tzdata_2014i-1_all.deb ... Unpacking tzdata (2014i-1) over (2014h-2) ... Setting up tzdata (2014i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 24 13:45:14 UTC 2014. Universal Time is now: Fri Oct 24 13:45:14 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11489 files and directories currently installed.) Preparing to unpack .../ca-certificates_20141019_all.deb ... Unpacking ca-certificates (20141019) over (20140325) ... Setting up libubsan0:amd64 (4.9.1-19ubuntu1) ... Setting up libtsan0:amd64 (4.9.1-19ubuntu1) ... Setting up libgomp1:amd64 (4.9.1-19ubuntu1) ... Setting up libitm1:amd64 (4.9.1-19ubuntu1) ... Setting up libatomic1:amd64 (4.9.1-19ubuntu1) ... Setting up libasan1:amd64 (4.9.1-19ubuntu1) ... Setting up liblsan0:amd64 (4.9.1-19ubuntu1) ... Setting up libcilkrts5:amd64 (4.9.1-19ubuntu1) ... Setting up libquadmath0:amd64 (4.9.1-19ubuntu1) ... Setting up libgcc-4.9-dev:amd64 (4.9.1-19ubuntu1) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-6) ... Setting up cpp-4.9 (4.9.1-19ubuntu1) ... Setting up binutils (2.24.90.20141023-1ubuntu1) ... Setting up gcc-4.9 (4.9.1-19ubuntu1) ... Setting up libstdc++-4.9-dev:amd64 (4.9.1-19ubuntu1) ... Setting up g++-4.9 (4.9.1-19ubuntu1) ... Setting up libkrb5support0:amd64 (1.12.1+dfsg-11) ... Setting up libk5crypto3:amd64 (1.12.1+dfsg-11) ... Setting up libkrb5-3:amd64 (1.12.1+dfsg-11) ... Setting up libgssapi-krb5-2:amd64 (1.12.1+dfsg-11) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-12) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-12) ... Setting up ca-certificates (20141019) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 10 added, 5 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6488402', 'amd64', 'vivid-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=vivid-proposed', '-A', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'flexbar_2.50-1.dsc'] Initiating build PACKAGEBUILD-6488402 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Automatic build of flexbar_2.50-1 on allspice by sbuild/amd64 1.170.5 Build started at 20141024-1345 ****************************************************************************** flexbar_2.50-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), libtbb-dev, cmake, seqan-dev (>= 1.4.1), zlib1g-dev, libbz2-dev Checking for already installed source dependencies... debhelper: missing libtbb-dev: missing cmake: missing seqan-dev: missing zlib1g-dev: missing libbz2-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper libtbb-dev cmake seqan-dev zlib1g-dev libbz2-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data dh-apparmor file gettext gettext-base groff-base intltool-debian libarchive13 libasprintf0c2 libcroco3 libcurl3 libexpat1 libglib2.0-0 liblzo2-2 libmagic1 libpipeline1 libtbb2 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation codeblocks eclipse dh-make apparmor-easyprof gettext-doc groff lrzip tbb-examples libtbb-doc less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper dh-apparmor file gettext gettext-base groff-base intltool-debian libarchive13 libasprintf0c2 libbz2-dev libcroco3 libcurl3 libexpat1 libglib2.0-0 liblzo2-2 libmagic1 libpipeline1 libtbb-dev libtbb2 libunistring0 libxml2 man-db po-debconf seqan-dev zlib1g-dev 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 68.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main libexpat1 amd64 2.1.0-6ubuntu1 [70.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main libmagic1 amd64 1:5.19-1ubuntu1.1 [201 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid/main libasprintf0c2 amd64 0.19.2-2ubuntu1 [6296 B] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main libglib2.0-0 amd64 2.42.0-2 [1088 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main libpipeline1 amd64 1.3.1-1 [24.4 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libxml2 amd64 2.9.1+dfsg1-4ubuntu1 [580 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main groff-base amd64 1.22.2-8 [1165 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main man-db amd64 2.7.0.2-2 [863 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main liblzo2-2 amd64 2.06-1.2ubuntu2 [46.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main libarchive13 amd64 3.1.2-9 [263 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main libcroco3 amd64 0.6.8-3 [83.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid/main libcurl3 amd64 7.37.1-1ubuntu3 [178 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/main libunistring0 amd64 0.9.3-5ubuntu3 [271 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main file amd64 1:5.19-1ubuntu1.1 [20.1 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main gettext-base amd64 0.19.2-2ubuntu1 [48.3 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main cmake-data all 2.8.12.2-0ubuntu6 [678 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main cmake amd64 2.8.12.2-0ubuntu6 [2691 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main gettext amd64 0.19.2-2ubuntu1 [851 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main po-debconf all 1.0.16+nmu3 [207 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main dh-apparmor all 2.8.98-0ubuntu2 [11.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main debhelper all 9.20141003ubuntu1 [726 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main libbz2-dev amd64 1.0.6-5ubuntu5 [29.0 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main zlib1g-dev amd64 1:1.2.8.dfsg-1ubuntu1 [183 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid/universe libtbb2 amd64 4.2~20130725-1.1ubuntu1 [94.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/universe libtbb-dev amd64 4.2~20130725-1.1ubuntu1 [176 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/universe seqan-dev all 1.4.1+dfsg-1 [2333 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.1 MB in 0s (20.3 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 11494 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6ubuntu1_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6ubuntu1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1.1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.19-1ubuntu1.1) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.42.0-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.42.0-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.3.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.3.1-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-4ubuntu1_amd64.deb ... 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Setting up libxml2:amd64 (2.9.1+dfsg1-4ubuntu1) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up liblzo2-2:amd64 (2.06-1.2ubuntu2) ... Setting up libarchive13:amd64 (3.1.2-9) ... Setting up libcroco3:amd64 (0.6.8-3) ... Setting up libcurl3:amd64 (7.37.1-1ubuntu3) ... Setting up libunistring0:amd64 (0.9.3-5ubuntu3) ... Setting up file (1:5.19-1ubuntu1.1) ... Setting up gettext-base (0.19.2-2ubuntu1) ... Setting up cmake-data (2.8.12.2-0ubuntu6) ... Setting up cmake (2.8.12.2-0ubuntu6) ... Setting up gettext (0.19.2-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.98-0ubuntu2) ... Setting up debhelper (9.20141003ubuntu1) ... Setting up libbz2-dev:amd64 (1.0.6-5ubuntu5) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up libtbb2 (4.2~20130725-1.1ubuntu1) ... Setting up libtbb-dev (4.2~20130725-1.1ubuntu1) ... Setting up seqan-dev (1.4.1+dfsg-1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-10ubuntu2 make_4.0-8 dpkg-dev_1.17.13ubuntu1 gcc-4.9_4.9.1-19ubuntu1 g++-4.9_4.9.1-19ubuntu1 binutils_2.24.90.20141023-1ubuntu1 libstdc++-4.9-dev_4.9.1-19ubuntu1 libstdc++6_4.9.1-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Thu Aug 21 14:51:33 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./flexbar_2.50-1.dsc dpkg-source: info: extracting flexbar in flexbar-2.50 dpkg-source: info: unpacking flexbar_2.50.orig.tar.gz dpkg-source: info: unpacking flexbar_2.50-1.debian.tar.xz dpkg-buildpackage: source package flexbar dpkg-buildpackage: source version 2.50-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build flexbar-2.50 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/build/buildd/flexbar-2.50' dh_auto_clean rm -f test/result_*fast[aq] make[1]: Leaving directory '/build/buildd/flexbar-2.50' dh_clean debian/rules build dh build dh_testdir dh_auto_configure -- The C compiler identification is GNU 4.9.1 -- The CXX compiler identification is GNU 4.9.1 -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Flexbar 64 bit architecture -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6") -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu dh_auto_build make[1]: Entering directory '/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu' /usr/bin/cmake -H/build/buildd/flexbar-2.50 -B/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/CMakeFiles /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu' make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/depend make[3]: Entering directory '/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu' cd /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/flexbar-2.50 /build/buildd/flexbar-2.50/src /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/src /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/src/CMakeFiles/flexbar.dir/DependInfo.cmake --color= Scanning dependencies of target flexbar make[3]: Leaving directory '/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu' make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/build make[3]: Entering directory '/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/CMakeFiles 1 [100%] Building CXX object src/CMakeFiles/flexbar.dir/Flexbar.cpp.o cd /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/src && /usr/bin/x86_64-linux-gnu-g++ -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -o CMakeFiles/flexbar.dir/Flexbar.cpp.o -c /build/buildd/flexbar-2.50/src/Flexbar.cpp Linking CXX executable ../flexbar cd /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/flexbar.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/flexbar.dir/Flexbar.cpp.o -o ../flexbar -rdynamic -ltbb -lz -lbz2 make[3]: Leaving directory '/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/CMakeFiles 1 [100%] Built target flexbar make[2]: Leaving directory '/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/buildd/flexbar-2.50' cd test ; \ export PATH="/build/buildd/flexbar-2.50/obj-x86_64-linux-gnu:$PATH" ; \ echo $PATH ; \ which flexbar ; \ ./flexbar_validate.sh /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/usr/games /build/buildd/flexbar-2.50/obj-x86_64-linux-gnu/flexbar Testing fasta: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing csfasta: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing fastq: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing csfastq: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing decompression: Test gzip OK Test bzip2 OK make[1]: Leaving directory '/build/buildd/flexbar-2.50' /usr/bin/fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_compress dh_fixperms dh_strip dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: flexbar dh_strip debug symbol extraction: packages to act on: flexbar dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `flexbar-dbgsym' in `../flexbar-dbgsym_2.50-1_amd64.ddeb'. dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums dh_builddeb INFO: pkgstriptranslations version 121 pkgstriptranslations: processing flexbar (in debian/flexbar); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/flexbar/DEBIAN/control, package flexbar, directory debian/flexbar pkgstripfiles: PNG optimization for package flexbar took 0 s dpkg-deb: warning: 'debian/flexbar/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `flexbar' in `../flexbar_2.50-1_amd64.deb'. dpkg-genchanges -b -mUbuntu/amd64 Build Daemon >../flexbar_2.50-1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build flexbar-2.50 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20141024-1346 Publishing debug debs. chroot-autobuild/build/buildd/flexbar_2.50-1_amd64.deb: new debian package, version 2.0. size 238364 bytes: control archive= 2240 bytes. 1193 bytes, 22 lines control 5249 bytes, 61 lines md5sums Package: flexbar Version: 2.50-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1247 Depends: libbz2-1.0, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.9), libtbb2, zlib1g (>= 1:1.2.3.4) Section: science Priority: optional Homepage: https://sourceforge.net/projects/flexbar/ Description: flexible barcode and adapter removal for sequencing platforms Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports next-generation sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, and the SOLiD platform. . Parameter names changed in Flexbar. Please review scripts. The recent months, default settings were optimised, several bugs were fixed and various improvements were made, e.g. revamped command-line interface, new trimming modes as well as lower time and memory requirements. chroot-autobuild/build/buildd/flexbar_2.50-1_amd64.deb: drwxr-xr-x root/root 0 2014-10-24 13:46 ./ drwxr-xr-x root/root 0 2014-10-24 13:46 ./usr/ drwxr-xr-x root/root 0 2014-10-24 13:46 ./usr/share/ drwxr-xr-x root/root 0 2014-10-24 13:46 ./usr/share/man/ drwxr-xr-x root/root 0 2014-10-24 13:46 ./usr/share/man/man1/ -rw-r--r-- root/root 1883 2014-10-24 13:46 ./usr/share/man/man1/flexbar.1.gz drwxr-xr-x root/root 0 2014-10-24 13:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-24 13:46 ./usr/share/doc/flexbar/ -rw-r--r-- root/root 323 2014-01-31 14:05 ./usr/share/doc/flexbar/README.test -rw-r--r-- root/root 2050 2014-07-04 12:52 ./usr/share/doc/flexbar/copyright drwxr-xr-x root/root 0 2014-10-24 13:46 ./usr/share/doc/flexbar/examples/ -rw-r--r-- root/root 1131 2013-07-13 21:15 ./usr/share/doc/flexbar/examples/correct_result_left_tail.csfastq -rw-r--r-- root/root 1940 2013-05-25 15:32 ./usr/share/doc/flexbar/examples/correct_result_right_tail.fastq -rw-r--r-- root/root 932 2013-07-13 21:15 ./usr/share/doc/flexbar/examples/correct_result_right.csfastq -rwxr-xr-x root/root 1837 2014-06-29 22:16 ./usr/share/doc/flexbar/examples/flexbar_test_csfastq.sh -rw-r--r-- root/root 1940 2014-10-24 13:46 ./usr/share/doc/flexbar/examples/result_right_tail.fastq -rw-r--r-- root/root 953 2014-10-24 13:46 ./usr/share/doc/flexbar/examples/result_left.fastq -rw-r--r-- root/root 1430 2014-10-24 13:46 ./usr/share/doc/flexbar/examples/result_gz.fastq -rw-r--r-- root/root 839 2013-07-13 21:15 ./usr/share/doc/flexbar/examples/correct_result_right_tail.csfasta -rw-r--r-- root/root 767 2014-10-24 13:46 ./usr/share/doc/flexbar/examples/result_left.fasta -rw-r--r-- root/root 701 2013-07-13 21:15 ./usr/share/doc/flexbar/examples/correct_result_any.csfasta -rw-r--r-- root/root 701 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flexbar - flexible barcode and adapter removal for sequencing platforms Changes: flexbar (2.50-1) unstable; urgency=medium . * New upstream version (patches applied) * Add zlib1g-dev and libbz2-dev as Build-Depends * Fixed upstream contact Checksums-Sha1: 0156fc7febb845fbd4722af45553b37aa6643c6d 238364 flexbar_2.50-1_amd64.deb Checksums-Sha256: 7837bc317cac2050cda64b5be37100b7308be63311bb5b517ec89ca3158b39e8 238364 flexbar_2.50-1_amd64.deb Files: 77787b43647cd1ca38e04efca06fe5e5 238364 science optional flexbar_2.50-1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20141024-1346 Build needed 00:01:04, 40980k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6488402'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6488402/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6488402'] Unmounting chroot for build PACKAGEBUILD-6488402... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6488402'] Removing build PACKAGEBUILD-6488402