RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-17 4.4.0-45-generic #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.2 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.5. Syncing the system clock with the buildd NTP service... 1 Nov 17:26:52 ntpdate[1751]: adjust time server 10.211.37.1 offset 0.001244 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11110960', '/home/buildd/filecache-default/5ce6418ad8acb4cb980a16cd30f1736d3291c7a9'] Unpacking chroot for build PACKAGEBUILD-11110960 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11110960'] Mounting chroot for build PACKAGEBUILD-11110960 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11110960', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11110960 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11110960', 'i386'] Updating debian chroot for build PACKAGEBUILD-11110960 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [92.1 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [95.6 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main i386 Packages [1221 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [583 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe i386 Packages [7726 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4486 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main i386 Packages [36.1 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [22.3 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe i386 Packages [174 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [69.5 kB] Fetched 14.8 MB in 7s (1940 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser base-files binutils cpp-6 dmsetup g++-6 gcc-6 gcc-6-base libapparmor1 libasan3 libatomic1 libcc1-0 libcilkrts5 libdevmapper1.02.1 libgcc-6-dev libgcc1 libgomp1 libitm1 libldap-2.4-2 liblzma5 libmpx2 libquadmath0 libstdc++-6-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev perl perl-base systemd systemd-sysv tzdata ubuntu-keyring xz-utils 35 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 41.3 MB of archives. After this operation, 33.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main i386 base-files i386 9.6ubuntu6 [55.8 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main i386 perl-modules-5.24 all 5.24.1~rc3-3 [2661 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main i386 libperl5.24 i386 5.24.1~rc3-3 [3094 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main i386 perl i386 5.24.1~rc3-3 [237 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main i386 perl-base i386 5.24.1~rc3-3 [1409 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main i386 libapparmor1 i386 2.10.95-4ubuntu5.2 [31.6 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main i386 liblzma5 i386 5.2.2-1.2 [98.7 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main i386 adduser all 3.113+nmu3ubuntu5 [161 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main i386 systemd i386 231-10 [2324 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main i386 libsystemd0 i386 231-10 [227 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main i386 systemd-sysv i386 231-10 [14.3 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main i386 libquadmath0 i386 6.2.0-10ubuntu1 [205 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main i386 libitm1 i386 6.2.0-10ubuntu1 [31.2 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main i386 libcc1-0 i386 6.2.0-10ubuntu1 [32.9 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main i386 libgomp1 i386 6.2.0-10ubuntu1 [80.0 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main i386 libatomic1 i386 6.2.0-10ubuntu1 [9886 B] Get:17 http://ftpmaster.internal/ubuntu zesty/main i386 libasan3 i386 6.2.0-10ubuntu1 [300 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main i386 libubsan0 i386 6.2.0-10ubuntu1 [120 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main i386 libcilkrts5 i386 6.2.0-10ubuntu1 [45.7 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main i386 libmpx2 i386 6.2.0-10ubuntu1 [12.8 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main i386 gcc-6-base i386 6.2.0-10ubuntu1 [17.3 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main i386 libstdc++6 i386 6.2.0-10ubuntu1 [434 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main i386 g++-6 i386 6.2.0-10ubuntu1 [7619 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main i386 libstdc++-6-dev i386 6.2.0-10ubuntu1 [1445 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main i386 libgcc-6-dev i386 6.2.0-10ubuntu1 [2306 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main i386 gcc-6 i386 6.2.0-10ubuntu1 [7362 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main i386 cpp-6 i386 6.2.0-10ubuntu1 [6826 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main i386 libgcc1 i386 1:6.2.0-10ubuntu1 [48.0 kB] Get:29 http://ftpmaster.internal/ubuntu zesty-proposed/main i386 binutils i386 2.27-9ubuntu1 [2504 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main i386 libudev1 i386 231-10 [60.3 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main i386 ubuntu-keyring all 2016.10.27 [16.6 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main i386 tzdata all 2016h-1 [169 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main i386 libdevmapper1.02.1 i386 2:1.02.133-1ubuntu1 [172 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main i386 dmsetup i386 2:1.02.133-1ubuntu1 [79.6 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main i386 libldap-2.4-2 i386 2.4.42+dfsg-2ubuntu5 [173 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main i386 xz-utils i386 5.2.2-1.2 [86.3 kB] Get:37 http://ftpmaster.internal/ubuntu zesty-proposed/main i386 linux-libc-dev i386 4.8.0-27.29 [856 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.3 MB in 7s (5826 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12310 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu6_i386.deb ... Unpacking base-files (9.6ubuntu6) over (9.6ubuntu5) ... Setting up base-files (9.6ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12310 files and directories currently installed.) Preparing to unpack .../0-perl_5.24.1~rc3-3_i386.deb ... Unpacking perl (5.24.1~rc3-3) over (5.22.2-3) ... Selecting previously unselected package perl-modules-5.24. Preparing to unpack .../1-perl-modules-5.24_5.24.1~rc3-3_all.deb ... Unpacking perl-modules-5.24 (5.24.1~rc3-3) ... Selecting previously unselected package libperl5.24:i386. Preparing to unpack .../2-libperl5.24_5.24.1~rc3-3_i386.deb ... Unpacking libperl5.24:i386 (5.24.1~rc3-3) ... Preparing to unpack .../3-perl-base_5.24.1~rc3-3_i386.deb ... Unpacking perl-base (5.24.1~rc3-3) over (5.22.2-3) ... Setting up perl-base (5.24.1~rc3-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14103 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.10.95-4ubuntu5.2_i386.deb ... Unpacking libapparmor1:i386 (2.10.95-4ubuntu5.2) over (2.10.95-4ubuntu5) ... Preparing to unpack .../1-liblzma5_5.2.2-1.2_i386.deb ... Unpacking liblzma5:i386 (5.2.2-1.2) over (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up liblzma5:i386 (5.2.2-1.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14103 files and directories currently installed.) Preparing to unpack .../adduser_3.113+nmu3ubuntu5_all.deb ... Unpacking adduser (3.113+nmu3ubuntu5) over (3.113+nmu3ubuntu4) ... Setting up adduser (3.113+nmu3ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14103 files and directories currently installed.) Preparing to unpack .../0-systemd_231-10_i386.deb ... Unpacking systemd (231-10) over (231-9git1) ... Preparing to unpack .../1-libsystemd0_231-10_i386.deb ... Unpacking libsystemd0:i386 (231-10) over (231-9git1) ... Setting up libsystemd0:i386 (231-10) ... Setting up libapparmor1:i386 (2.10.95-4ubuntu5.2) ... Setting up systemd (231-10) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14099 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_231-10_i386.deb ... Unpacking systemd-sysv (231-10) over (231-9git1) ... Preparing to unpack .../01-libquadmath0_6.2.0-10ubuntu1_i386.deb ... Unpacking libquadmath0:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../02-libitm1_6.2.0-10ubuntu1_i386.deb ... Unpacking libitm1:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../03-libcc1-0_6.2.0-10ubuntu1_i386.deb ... Unpacking libcc1-0:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../04-libgomp1_6.2.0-10ubuntu1_i386.deb ... Unpacking libgomp1:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../05-libatomic1_6.2.0-10ubuntu1_i386.deb ... Unpacking libatomic1:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../06-libasan3_6.2.0-10ubuntu1_i386.deb ... Unpacking libasan3:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../07-libubsan0_6.2.0-10ubuntu1_i386.deb ... Unpacking libubsan0:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../08-libcilkrts5_6.2.0-10ubuntu1_i386.deb ... Unpacking libcilkrts5:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../09-libmpx2_6.2.0-10ubuntu1_i386.deb ... Unpacking libmpx2:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../10-gcc-6-base_6.2.0-10ubuntu1_i386.deb ... Unpacking gcc-6-base:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Setting up gcc-6-base:i386 (6.2.0-10ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14099 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.2.0-10ubuntu1_i386.deb ... Unpacking libstdc++6:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Setting up libstdc++6:i386 (6.2.0-10ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14099 files and directories currently installed.) Preparing to unpack .../0-g++-6_6.2.0-10ubuntu1_i386.deb ... Unpacking g++-6 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../1-libstdc++-6-dev_6.2.0-10ubuntu1_i386.deb ... Unpacking libstdc++-6-dev:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../2-libgcc-6-dev_6.2.0-10ubuntu1_i386.deb ... Unpacking libgcc-6-dev:i386 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../3-gcc-6_6.2.0-10ubuntu1_i386.deb ... Unpacking gcc-6 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../4-cpp-6_6.2.0-10ubuntu1_i386.deb ... Unpacking cpp-6 (6.2.0-10ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../5-libgcc1_1%3a6.2.0-10ubuntu1_i386.deb ... Unpacking libgcc1:i386 (1:6.2.0-10ubuntu1) over (1:6.2.0-5ubuntu12) ... Setting up libgcc1:i386 (1:6.2.0-10ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14096 files and directories currently installed.) Preparing to unpack .../0-binutils_2.27-9ubuntu1_i386.deb ... Unpacking binutils (2.27-9ubuntu1) over (2.27-8ubuntu2) ... Preparing to unpack .../1-libudev1_231-10_i386.deb ... Unpacking libudev1:i386 (231-10) over (231-9git1) ... Setting up libudev1:i386 (231-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14096 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.10.27_all.deb ... Unpacking ubuntu-keyring (2016.10.27) over (2016.09.19) ... Setting up ubuntu-keyring (2016.10.27) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14094 files and directories currently installed.) Preparing to unpack .../0-tzdata_2016h-1_all.deb ... Unpacking tzdata (2016h-1) over (2016g-1) ... Preparing to unpack .../1-libdevmapper1.02.1_2%3a1.02.133-1ubuntu1_i386.deb ... Unpacking libdevmapper1.02.1:i386 (2:1.02.133-1ubuntu1) over (2:1.02.130-1ubuntu1) ... Preparing to unpack .../2-dmsetup_2%3a1.02.133-1ubuntu1_i386.deb ... Unpacking dmsetup (2:1.02.133-1ubuntu1) over (2:1.02.130-1ubuntu1) ... Preparing to unpack .../3-libldap-2.4-2_2.4.42+dfsg-2ubuntu5_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.42+dfsg-2ubuntu5) over (2.4.42+dfsg-2ubuntu4) ... Preparing to unpack .../4-xz-utils_5.2.2-1.2_i386.deb ... Unpacking xz-utils (5.2.2-1.2) over (5.1.1alpha+20120614-2.1ubuntu1) ... Preparing to unpack .../5-linux-libc-dev_4.8.0-27.29_i386.deb ... Unpacking linux-libc-dev:i386 (4.8.0-27.29) over (4.8.0-22.24) ... Setting up libquadmath0:i386 (6.2.0-10ubuntu1) ... Setting up libgomp1:i386 (6.2.0-10ubuntu1) ... Setting up libatomic1:i386 (6.2.0-10ubuntu1) ... Setting up perl-modules-5.24 (5.24.1~rc3-3) ... Setting up libperl5.24:i386 (5.24.1~rc3-3) ... Setting up libcc1-0:i386 (6.2.0-10ubuntu1) ... Setting up libasan3:i386 (6.2.0-10ubuntu1) ... Setting up libcilkrts5:i386 (6.2.0-10ubuntu1) ... Setting up tzdata (2016h-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Nov 1 17:27:43 UTC 2016. Universal Time is now: Tue Nov 1 17:27:43 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (231-10) ... Setting up libubsan0:i386 (6.2.0-10ubuntu1) ... Setting up linux-libc-dev:i386 (4.8.0-27.29) ... Setting up libdevmapper1.02.1:i386 (2:1.02.133-1ubuntu1) ... Setting up perl (5.24.1~rc3-3) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up libmpx2:i386 (6.2.0-10ubuntu1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up libldap-2.4-2:i386 (2.4.42+dfsg-2ubuntu5) ... Setting up xz-utils (5.2.2-1.2) ... Setting up dmsetup (2:1.02.133-1ubuntu1) ... Setting up binutils (2.27-9ubuntu1) ... Setting up cpp-6 (6.2.0-10ubuntu1) ... Setting up libitm1:i386 (6.2.0-10ubuntu1) ... Setting up libgcc-6-dev:i386 (6.2.0-10ubuntu1) ... Setting up libstdc++-6-dev:i386 (6.2.0-10ubuntu1) ... Setting up gcc-6 (6.2.0-10ubuntu1) ... Setting up g++-6 (6.2.0-10ubuntu1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11110960', 'i386', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=zesty-proposed', '--purge=never', '--nolog', 'freecontact_1.0.21-4build3.dsc'] Initiating build PACKAGEBUILD-11110960 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-45-generic #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-17.buildd +==============================================================================+ | freecontact 1.0.21-4build3 (i386) 01 Nov 2016 17:27 | +==============================================================================+ Package: freecontact Version: 1.0.21-4build3 Source Version: 1.0.21-4build3 Distribution: zesty-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/freecontact-KTk8vO/freecontact-1.0.21' with '<>' I: NOTICE: Log filtering will replace 'build/freecontact-KTk8vO' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11110960/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- freecontact_1.0.21-4build3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-F3jr5l/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-F3jr5l/apt_archive ./ InRelease Get:2 copy:/<>/resolver-F3jr5l/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-F3jr5l/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-F3jr5l/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-F3jr5l/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (85.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-F3jr5l/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14094 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9.0.0), automake, autotools-dev, bash-completion, dh-autoreconf, d-shlibs, dpkg-dev (>= 1.16.2), gfortran, libblas-dev | libblas-3.so, libboost-dev, libboost-program-options-dev, liblapack-dev | liblapack-3.so, libtool, libxerces-c-dev, perl, xsdcxx (>= 3.3) Filtered Build-Depends: debhelper (>= 9.0.0), automake, autotools-dev, bash-completion, dh-autoreconf, d-shlibs, dpkg-dev (>= 1.16.2), gfortran, libblas-dev | libblas-3.so, libboost-dev, libboost-program-options-dev, liblapack-dev | liblapack-3.so, libtool, libxerces-c-dev, perl, xsdcxx (>= 3.3) dpkg-deb: building package 'sbuild-build-depends-freecontact-dummy' in '/<>/resolver-8S88fr/apt_archive/sbuild-build-depends-freecontact-dummy.deb'. Ign:1 copy:/<>/resolver-8S88fr/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8S88fr/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-8S88fr/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8S88fr/apt_archive ./ Sources [337 B] Get:5 copy:/<>/resolver-8S88fr/apt_archive ./ Packages [654 B] Fetched 3110 B in 0s (186 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install freecontact build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libboost-dev libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost1.62-dev libcroco3 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libicu-dev libicu57 liblapack-dev liblapack3 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxerces-c-dev libxerces-c3.1 libxml2 m4 man-db po-debconf xsdcxx Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff liblapack-doc-man liblapack-doc libboost-doc libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev icu-doc libtool-doc gcj-jdk libxerces-c-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-common libblas-dev libblas3 libboost-dev libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost1.62-dev libcroco3 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libicu-dev libicu57 liblapack-dev liblapack3 libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxerces-c-dev libxerces-c3.1 libxml2 m4 man-db po-debconf sbuild-build-depends-freecontact-dummy xsdcxx 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 55.5 MB of archives. After this operation, 322 MB of additional disk space will be used. Get:1 copy:/<>/resolver-8S88fr/apt_archive ./ sbuild-build-depends-freecontact-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main i386 bash-completion all 1:2.1-4.3ubuntu1 [150 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main i386 groff-base i386 1.22.3-8 [1150 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main i386 bsdmainutils i386 9.0.6ubuntu3 [175 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main i386 libpipeline1 i386 1.4.1-2 [26.5 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main i386 man-db i386 2.7.5-1 [865 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main i386 libunistring0 i386 0.9.3-5.2ubuntu1 [277 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main i386 libmagic1 i386 1:5.28-2ubuntu1 [240 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main i386 file i386 1:5.28-2ubuntu1 [21.7 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main i386 gettext-base i386 0.19.8.1-1ubuntu2 [49.0 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main i386 libglib2.0-0 i386 2.50.0-1 [1212 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main i386 libicu57 i386 57.1-4 [7816 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main i386 libxml2 i386 2.9.4+dfsg1-2 [733 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main i386 libsigsegv2 i386 2.10-5 [14.3 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main i386 m4 i386 1.4.17-5 [195 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main i386 autoconf all 2.69-10 [321 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main i386 autotools-dev all 20160430.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main i386 automake all 1:1.15-4ubuntu1 [510 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main i386 autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/universe i386 d-shlibs all 0.77ubuntu1 [9250 B] Get:21 http://ftpmaster.internal/ubuntu zesty/main i386 libtool all 2.4.6-1 [194 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main i386 dh-autoreconf all 12 [15.8 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main i386 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main i386 libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main i386 dh-strip-nondeterminism all 0.028-1 [4820 B] Get:27 http://ftpmaster.internal/ubuntu zesty/main i386 libcroco3 i386 0.6.11-1 [87.8 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main i386 gettext i386 0.19.8.1-1ubuntu2 [1086 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main i386 po-debconf all 1.0.19 [234 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main i386 debhelper all 10.2.2ubuntu1 [742 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main i386 libgfortran3 i386 6.2.0-10ubuntu1 [263 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main i386 libgfortran-6-dev i386 6.2.0-10ubuntu1 [288 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main i386 gfortran-6 i386 6.2.0-10ubuntu1 [7196 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main i386 gfortran i386 4:6.1.1-1ubuntu2 [1272 B] Get:36 http://ftpmaster.internal/ubuntu zesty/main i386 icu-devtools i386 57.1-4 [165 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main i386 libblas-common i386 3.6.1-2ubuntu1 [5676 B] Get:38 http://ftpmaster.internal/ubuntu zesty/main i386 libblas3 i386 3.6.1-2ubuntu1 [128 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main i386 libblas-dev i386 3.6.1-2ubuntu1 [7702 B] Get:40 http://ftpmaster.internal/ubuntu zesty/universe i386 libboost1.62-dev i386 1.62.0+dfsg-2 [6986 kB] Get:41 http://ftpmaster.internal/ubuntu zesty-proposed/main i386 libboost-dev i386 1.62.0.0ubuntu1 [3090 B] Get:42 http://ftpmaster.internal/ubuntu zesty/universe i386 libboost-program-options1.62.0 i386 1.62.0+dfsg-2 [143 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/universe i386 libboost-program-options1.62-dev i386 1.62.0+dfsg-2 [154 kB] Get:44 http://ftpmaster.internal/ubuntu zesty-proposed/main i386 libboost-program-options-dev i386 1.62.0.0ubuntu1 [2892 B] Get:45 http://ftpmaster.internal/ubuntu zesty/main i386 libicu-dev i386 57.1-4 [15.5 MB] Get:46 http://ftpmaster.internal/ubuntu zesty/main i386 liblapack3 i386 3.6.1-2ubuntu1 [1766 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main i386 liblapack-dev i386 3.6.1-2ubuntu1 [1694 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/universe i386 libxerces-c3.1 i386 3.1.3+debian-2.1 [885 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/universe i386 libxerces-c-dev i386 3.1.3+debian-2.1 [1644 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/universe i386 xsdcxx i386 4.0.0-6 [1875 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.5 MB in 14s (3827 kB/s) Selecting previously unselected package bash-completion. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14094 files and directories currently installed.) Preparing to unpack .../00-bash-completion_1%3a2.1-4.3ubuntu1_all.deb ... Unpacking bash-completion (1:2.1-4.3ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../01-groff-base_1.22.3-8_i386.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.6ubuntu3_i386.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.4.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.5-1_i386.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:i386. Preparing to unpack .../05-libunistring0_0.9.3-5.2ubuntu1_i386.deb ... Unpacking libunistring0:i386 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../06-libmagic1_1%3a5.28-2ubuntu1_i386.deb ... Unpacking libmagic1:i386 (1:5.28-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.28-2ubuntu1_i386.deb ... Unpacking file (1:5.28-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.19.8.1-1ubuntu2_i386.deb ... Unpacking gettext-base (0.19.8.1-1ubuntu2) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../09-libglib2.0-0_2.50.0-1_i386.deb ... Unpacking libglib2.0-0:i386 (2.50.0-1) ... Selecting previously unselected package libicu57:i386. Preparing to unpack .../10-libicu57_57.1-4_i386.deb ... Unpacking libicu57:i386 (57.1-4) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../11-libxml2_2.9.4+dfsg1-2_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-2) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../12-libsigsegv2_2.10-5_i386.deb ... Unpacking libsigsegv2:i386 (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.17-5_i386.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20160430.1_all.deb ... Unpacking autotools-dev (20160430.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.15-4ubuntu1_all.deb ... Unpacking automake (1:1.15-4ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.19.8.1-1ubuntu2_all.deb ... Unpacking autopoint (0.19.8.1-1ubuntu2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../18-d-shlibs_0.77ubuntu1_all.deb ... Unpacking d-shlibs (0.77ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.6-1_all.deb ... Unpacking libtool (2.4.6-1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_0.028-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.028-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../23-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_0.028-1_all.deb ... Unpacking dh-strip-nondeterminism (0.028-1) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../25-libcroco3_0.6.11-1_i386.deb ... Unpacking libcroco3:i386 (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.19.8.1-1ubuntu2_i386.deb ... Unpacking gettext (0.19.8.1-1ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_10.2.2ubuntu1_all.deb ... Unpacking debhelper (10.2.2ubuntu1) ... Selecting previously unselected package libgfortran3:i386. Preparing to unpack .../30-libgfortran3_6.2.0-10ubuntu1_i386.deb ... Unpacking libgfortran3:i386 (6.2.0-10ubuntu1) ... Selecting previously unselected package libgfortran-6-dev:i386. Preparing to unpack .../31-libgfortran-6-dev_6.2.0-10ubuntu1_i386.deb ... Unpacking libgfortran-6-dev:i386 (6.2.0-10ubuntu1) ... Selecting previously unselected package gfortran-6. Preparing to unpack .../32-gfortran-6_6.2.0-10ubuntu1_i386.deb ... Unpacking gfortran-6 (6.2.0-10ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../33-gfortran_4%3a6.1.1-1ubuntu2_i386.deb ... Unpacking gfortran (4:6.1.1-1ubuntu2) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../34-icu-devtools_57.1-4_i386.deb ... Unpacking icu-devtools (57.1-4) ... Selecting previously unselected package libblas-common. Preparing to unpack .../35-libblas-common_3.6.1-2ubuntu1_i386.deb ... Unpacking libblas-common (3.6.1-2ubuntu1) ... Selecting previously unselected package libblas3. Preparing to unpack .../36-libblas3_3.6.1-2ubuntu1_i386.deb ... Unpacking libblas3 (3.6.1-2ubuntu1) ... Selecting previously unselected package libblas-dev. Preparing to unpack .../37-libblas-dev_3.6.1-2ubuntu1_i386.deb ... Unpacking libblas-dev (3.6.1-2ubuntu1) ... Selecting previously unselected package libboost1.62-dev:i386. Preparing to unpack .../38-libboost1.62-dev_1.62.0+dfsg-2_i386.deb ... Unpacking libboost1.62-dev:i386 (1.62.0+dfsg-2) ... Selecting previously unselected package libboost-dev:i386. Preparing to unpack .../39-libboost-dev_1.62.0.0ubuntu1_i386.deb ... Unpacking libboost-dev:i386 (1.62.0.0ubuntu1) ... Selecting previously unselected package libboost-program-options1.62.0:i386. Preparing to unpack .../40-libboost-program-options1.62.0_1.62.0+dfsg-2_i386.deb ... Unpacking libboost-program-options1.62.0:i386 (1.62.0+dfsg-2) ... Selecting previously unselected package libboost-program-options1.62-dev:i386. Preparing to unpack .../41-libboost-program-options1.62-dev_1.62.0+dfsg-2_i386.deb ... Unpacking libboost-program-options1.62-dev:i386 (1.62.0+dfsg-2) ... Selecting previously unselected package libboost-program-options-dev:i386. Preparing to unpack .../42-libboost-program-options-dev_1.62.0.0ubuntu1_i386.deb ... Unpacking libboost-program-options-dev:i386 (1.62.0.0ubuntu1) ... Selecting previously unselected package libicu-dev. Preparing to unpack .../43-libicu-dev_57.1-4_i386.deb ... Unpacking libicu-dev (57.1-4) ... Selecting previously unselected package liblapack3. Preparing to unpack .../44-liblapack3_3.6.1-2ubuntu1_i386.deb ... Unpacking liblapack3 (3.6.1-2ubuntu1) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../45-liblapack-dev_3.6.1-2ubuntu1_i386.deb ... Unpacking liblapack-dev (3.6.1-2ubuntu1) ... Selecting previously unselected package libxerces-c3.1:i386. Preparing to unpack .../46-libxerces-c3.1_3.1.3+debian-2.1_i386.deb ... Unpacking libxerces-c3.1:i386 (3.1.3+debian-2.1) ... Selecting previously unselected package libxerces-c-dev. Preparing to unpack .../47-libxerces-c-dev_3.1.3+debian-2.1_i386.deb ... Unpacking libxerces-c-dev (3.1.3+debian-2.1) ... Selecting previously unselected package xsdcxx. Preparing to unpack .../48-xsdcxx_4.0.0-6_i386.deb ... Unpacking xsdcxx (4.0.0-6) ... Selecting previously unselected package sbuild-build-depends-freecontact-dummy. Preparing to unpack .../49-sbuild-build-depends-freecontact-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-freecontact-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libboost1.62-dev:i386 (1.62.0+dfsg-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:i386 (2.10-5) ... Setting up libboost-program-options1.62.0:i386 (1.62.0+dfsg-2) ... Setting up libblas-common (3.6.1-2ubuntu1) ... Setting up bash-completion (1:2.1-4.3ubuntu1) ... Setting up libgfortran3:i386 (6.2.0-10ubuntu1) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:i386 (2.50.0-1) ... No schema files found: doing nothing. Setting up libgfortran-6-dev:i386 (6.2.0-10ubuntu1) ... Setting up libboost-program-options1.62-dev:i386 (1.62.0+dfsg-2) ... Setting up d-shlibs (0.77ubuntu1) ... Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libpipeline1:i386 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:i386 (57.1-4) ... Setting up libxml2:i386 (2.9.4+dfsg1-2) ... Setting up libmagic1:i386 (1:5.28-2ubuntu1) ... Setting up libcroco3:i386 (0.6.11-1) ... Setting up libblas3 (3.6.1-2ubuntu1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:i386 (0.9.3-5.2ubuntu1) ... Setting up icu-devtools (57.1-4) ... Setting up libboost-dev:i386 (1.62.0.0ubuntu1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libboost-program-options-dev:i386 (1.62.0.0ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up libxerces-c3.1:i386 (3.1.3+debian-2.1) ... Setting up gfortran-6 (6.2.0-10ubuntu1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up liblapack3 (3.6.1-2ubuntu1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-4) ... Setting up file (1:5.28-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up xsdcxx (4.0.0-6) ... Setting up libtool (2.4.6-1) ... Setting up gfortran (4:6.1.1-1ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxerces-c-dev (3.1.3+debian-2.1) ... Setting up po-debconf (1.0.19) ... Setting up libblas-dev (3.6.1-2ubuntu1) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up liblapack-dev (3.6.1-2ubuntu1) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up dh-autoreconf (12) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up sbuild-build-depends-freecontact-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.028-1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-45-generic amd64 (i686) Toolchain package versions: binutils_2.27-9ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.0-10ubuntu1 gcc-6_6.2.0-10ubuntu1 libc6-dev_2.24-3ubuntu1 libstdc++-6-dev_6.2.0-10ubuntu1 libstdc++6_6.2.0-10ubuntu1 linux-libc-dev_4.8.0-27.29 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.20-1 apt_1.3.1 apt-transport-https_1.3.1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20160430.1 base-files_9.6ubuntu6 base-passwd_3.5.40 bash_4.3-15ubuntu1 bash-completion_1:2.1-4.3ubuntu1 binutils_2.27-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28.2-1ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-6_6.2.0-10ubuntu1 d-shlibs_0.77ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.3-3 dmsetup_2:1.02.133-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-6_6.2.0-10ubuntu1 gcc_4:6.1.1-1ubuntu2 gcc-6_6.2.0-10ubuntu1 gcc-6-base_6.2.0-10ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gfortran_4:6.1.1-1ubuntu2 gfortran-6_6.2.0-10ubuntu1 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 icu-devtools_57.1-4 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-10ubuntu1 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libassuan0_2.4.3-1 libatomic1_6.2.0-10ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblas-common_3.6.1-2ubuntu1 libblas-dev_3.6.1-2ubuntu1 libblas3_3.6.1-2ubuntu1 libblkid1_2.28.2-1ubuntu1 libboost-dev_1.62.0.0ubuntu1 libboost-program-options-dev_1.62.0.0ubuntu1 libboost-program-options1.62-dev_1.62.0+dfsg-2 libboost-program-options1.62.0_1.62.0+dfsg-2 libboost1.62-dev_1.62.0+dfsg-2 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-3ubuntu1 libc-dev-bin_2.24-3ubuntu1 libc6_2.24-3ubuntu1 libc6-dev_2.24-3ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.0-10ubuntu1 libcilkrts5_6.2.0-10ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.133-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.28.2-1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libgcc-6-dev_6.2.0-10ubuntu1 libgcc1_1:6.2.0-10ubuntu1 libgcrypt20_1.7.2-2ubuntu1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.0-10ubuntu1 libgfortran3_6.2.0-10ubuntu1 libglib2.0-0_2.50.0-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-5ubuntu1 libgomp1_6.2.0-10ubuntu1 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.3+dfsg-2 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu-dev_57.1-4 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libitm1_6.2.0-10ubuntu1 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.4-4 liblapack-dev_3.6.1-2ubuntu1 liblapack3_3.6.1-2ubuntu1 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic1_1:5.28-2ubuntu1 libmount1_2.28.2-1ubuntu1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libmpx2_6.2.0-10ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libnpth0_1.2-3 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpng16-16_1.6.25-1 libprocps6_2:3.3.12-1ubuntu2 libquadmath0_6.2.0-10ubuntu1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28.2-1ubuntu1 libsqlite3-0_3.14.1-1build1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu9 libstdc++-6-dev_6.2.0-10ubuntu1 libstdc++6_6.2.0-10ubuntu1 libsystemd0_231-10 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libubsan0_6.2.0-10ubuntu1 libudev1_231-10 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1ubuntu1 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxerces-c-dev_3.1.3+debian-2.1 libxerces-c3.1_3.1.3+debian-2.1 libxml2_2.9.4+dfsg1-2 linux-libc-dev_4.8.0-27.29 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28.2-1ubuntu1 multiarch-support_2.24-3ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu9 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-5 pkg-create-dbgsym_0.72 pkgbinarymangler_131 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-freecontact-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 systemd_231-10 systemd-sysv_231-10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 tzdata_2016h-1 ubuntu-keyring_2016.10.27 util-linux_2.28.2-1ubuntu1 xsdcxx_4.0.0-6 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Nov 1 17:02:02 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./freecontact_1.0.21-4build3.dsc dpkg-source: info: extracting freecontact in freecontact-1.0.21 dpkg-source: info: unpacking freecontact_1.0.21.orig.tar.xz dpkg-source: info: unpacking freecontact_1.0.21-4build3.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package freecontact dpkg-buildpackage: info: source version 1.0.21-4build3 dpkg-buildpackage: info: source distribution zesty dpkg-source --before-build freecontact-1.0.21 dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from freecontact-1.0.21/debian/source/options: --single-debian-patch --extend-diff-ignore=(^|/)(config.guess|config.sub|INSTALL)$ fakeroot debian/rules clean dh clean --parallel --with bash-completion --with autoreconf dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -f build-indep-stamp dh_auto_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--parallel dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel --with bash-completion --with autoreconf dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel dh_autoreconf -a -O--parallel libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:29: installing './compile' configure.ac:22: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' dh_auto_configure -- --with-boost-libdir=/usr/lib/i386-linux-gnu ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-boost-libdir=/usr/lib/i386-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/i686-linux-gnu/6 -L/usr/lib/gcc/i686-linux-gnu/6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/6/../../.. -lgfortran -lm -lquadmath checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: -O3 enables: -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops checking for boostlib >= 1.20.0... yes checking whether the Boost::Program_Options library is available... yes checking for exit in -lboost_program_options... yes checking whether HAVE_BOOST_PROGRAM_OPTIONS is declared... yes checking for OpenMP flag of C++ compiler... -fopenmp checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/i686-linux-gnu/6 -L/usr/lib/gcc/i686-linux-gnu/6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/6/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking if sgemm_ is being linked in already... no checking for sgemm_ in -lopenblas... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lmkl_gf... no checking for sgemm_ in -lmkl... no checking for sgemm_ in -framework vecLib... no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for Xerces C++ Parser headers in /usr/include and /usr/include/xercesc... found checking for Xerces C++ Parser libraries... found checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown checking for x86 cpuid 0x00000001 output... 206a1:1000800:ffba2223:f8bfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes checking whether sse3 is supported... yes checking whether ssse3 is supported... yes checking whether sse4.1 is supported... yes checking whether sse4.2 is supported... yes checking whether avx is supported... yes checking whether C++ compiler accepts -mmmx... yes checking whether C++ compiler accepts -msse... yes checking whether C++ compiler accepts -msse2... yes checking whether C++ compiler accepts -msse3... yes checking whether C++ compiler accepts -mssse3... yes checking whether C++ compiler accepts -msse4.1... yes checking whether C++ compiler accepts -msse4.2... yes checking whether C++ compiler accepts -mavx... yes checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Doxyfile config.status: creating lib/Makefile config.status: creating src/Makefile config.status: creating lib/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' dh_auto_build -a -O--parallel make -j4 make[1]: Entering directory '/<>' Making all in lib make[2]: Entering directory '/<>/lib' make all-am make[3]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp /bin/bash ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -fPIC -DPIC -o .libs/libfreecontact_la-freecontact.o libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c glassofast-real.f90 -o libfreecontact_la-glassofast-real.o >/dev/null 2>&1 In file included from freecontact.cpp:32:0: freecontact.h:69:54: warning: ignoring attributes on template argument ‘freecontact::__m128i {aka __vector(2) long long int}’ [-Wignored-attributes] class LIBFREEC_API ali_t : public std::vector<__m128i> ^ freecontact.h: In constructor ‘freecontact::ali_t::ali_t(uint16_t)’: freecontact.h:80:79: warning: ignoring attributes on template argument ‘freecontact::__m128i {aka __vector(2) long long int}’ [-Wignored-attributes] ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) ^ freecontact.cpp: In function ‘freecontact::__m128i freecontact::_mm_setzero_si128()’: freecontact.cpp:192:41: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] static inline __m128i _mm_setzero_si128(){ __m128i m; long long *mp = (long long *)&m; mp[1] = mp[0] = 0; return m; } ^ freecontact.cpp: In destructor ‘virtual freecontact::_glasso_timer::~_glasso_timer()’: freecontact.cpp:232:83: warning: throw will always call terminate() [-Wterminate] if (timer_delete(_timerid) == -1) throw std::runtime_error(strerror(errno)); ^ freecontact.cpp:232:83: note: in C++11 destructors default to noexcept freecontact.cpp: In member function ‘void freecontact::predictor::get_seq_weights(freecontact::predictor::freq_vec_t&, double&, const freecontact::ali_t&, double, bool, int)’: freecontact.cpp:265:17: warning: unused variable ‘cache_holds_nseq’ [-Wunused-variable] uint32_t cache_holds_nseq = _cache_holds_nseq(__ali.alilenpad); ^~~~~~~~~~~~~~~~ freecontact.cpp: In member function ‘freecontact::predictor::cont_res_t freecontact::predictor::run(const freecontact::ali_t&, const freq_vec_t&, double, double, double, uint16_t, double, double, bool, double, bool, bool, double, int, time_t, freecontact::predictor::time_res_t*)’: freecontact.cpp:545:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(__timing) (*__timing)["pairfreq"] = t_diff.tv_sec+t_diff.tv_usec/1e6; if(dbg) fprintf(stderr, "calculated pair frequency table in %g secs\n", t_diff.tv_sec+t_diff.tv_usec/1e6 ); } ^~ freecontact.cpp:545:82: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if(__timing) (*__timing)["pairfreq"] = t_diff.tv_sec+t_diff.tv_usec/1e6; if(dbg) fprintf(stderr, "calculated pair frequency table in %g secs\n", t_diff.tv_sec+t_diff.tv_usec/1e6 ); } ^~ freecontact.cpp:690:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(__timing) (*__timing)["shrink"] = t_diff.tv_sec+t_diff.tv_usec/1e6; if(dbg) fprintf(stderr, "\nshrank covariance matrix in %g secs\n", t_diff.tv_sec+t_diff.tv_usec/1e6 ); } ^~ freecontact.cpp:690:84: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if(__timing) (*__timing)["shrink"] = t_diff.tv_sec+t_diff.tv_usec/1e6; if(dbg) fprintf(stderr, "\nshrank covariance matrix in %g secs\n", t_diff.tv_sec+t_diff.tv_usec/1e6 ); } ^~ freecontact.cpp: In member function ‘freecontact::predictor::cont_res_t freecontact::predictor::run(const freecontact::ali_t&, double, double, double, uint16_t, double, double, bool, double, bool, bool, double, bool, int, time_t, freecontact::predictor::time_res_t*)’: freecontact.cpp:995:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(__timing) (*__timing)["all"] = t_diff.tv_sec+t_diff.tv_usec/1e6; if(dbg) fprintf(stderr, "all done in %g secs\n", t_diff.tv_sec+t_diff.tv_usec/1e6); } ^~ freecontact.cpp:995:77: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if(__timing) (*__timing)["all"] = t_diff.tv_sec+t_diff.tv_usec/1e6; if(dbg) fprintf(stderr, "all done in %g secs\n", t_diff.tv_sec+t_diff.tv_usec/1e6); } ^~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -o libfreecontact_la-freecontact.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libfreecontact.la -rpath /usr/lib/i386-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/i686-linux-gnu/6 -L/usr/lib/gcc/i686-linux-gnu/6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/6/../../.. -lgfortran -lm -lquadmath -lblas -llapack libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/6/crtbeginS.o .libs/libfreecontact_la-freecontact.o .libs/libfreecontact_la-glassofast-real.o -lrt -L/usr/lib/gcc/i686-linux-gnu/6 -L/usr/lib/gcc/i686-linux-gnu/6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/6/../../.. -lgfortran -lquadmath -lblas -llapack -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/6/crtendS.o /usr/lib/gcc/i686-linux-gnu/6/../../../i386-linux-gnu/crtn.o -fopenmp -pthread -g -O2 -fstack-protector-strong -pthread -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -fopenmp -pthread -Wl,-soname -Wl,libfreecontact.so.0 -o .libs/libfreecontact.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfreecontact.so.0" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so.0") libtool: link: (cd ".libs" && rm -f "libfreecontact.so" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so") libtool: link: ar cru .libs/libfreecontact.a libfreecontact_la-freecontact.o libfreecontact_la-glassofast-real.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libfreecontact.a libtool: link: ( cd ".libs" && rm -f "libfreecontact.la" && ln -s "../libfreecontact.la" "libfreecontact.la" ) make[3]: Leaving directory '/<>/lib' make[2]: Leaving directory '/<>/lib' Making all in src make[2]: Entering directory '/<>/src' g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact.o `test -f 'freecontact.cpp' || echo './'`freecontact.cpp xsdcxx cxx-tree --location-map http://bioxsd.org/BioXSD-1.1.xsd=BioXSD-1.1.xsd \ --namespace-map http://rostlab.org/freecontact/input=freecontact_input_xsd \ --namespace-map http://rostlab.org/freecontact/output=freecontact_output_xsd \ --namespace-map http://bioxsd.org/BioXSD-1.1=BioXSD \ --generate-serialization --generate-doxygen \ --generate-polymorphic --polymorphic-type-all \ --omit-default-attributes \ --root-element-all \ --hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \ BioXSD-1.1.xsd sed -e 's|__pkgdatadir__|/usr/share/freecontact|g;s|__examplesdir__|/usr/share/doc/freecontact/examples|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;s|__PACKAGE_VERSION__|1.0.21|g' "freecontact.cpp" | \ pod2man --utf8 -c 'User Commands' -r "1.0.21" -name FREECONTACT > "freecontact.1" xsdcxx cxx-tree --location-map http://bioxsd.org/BioXSD-1.1.xsd=BioXSD-1.1.xsd \ --namespace-map http://rostlab.org/freecontact/input=freecontact_input_xsd \ --namespace-map http://rostlab.org/freecontact/output=freecontact_output_xsd \ --namespace-map http://bioxsd.org/BioXSD-1.1=BioXSD \ --generate-serialization --generate-doxygen \ --generate-polymorphic --polymorphic-type-all \ --omit-default-attributes \ --root-element-all \ --hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \ freecontact_input.xsd xsdcxx cxx-tree --location-map http://bioxsd.org/BioXSD-1.1.xsd=BioXSD-1.1.xsd \ --namespace-map http://rostlab.org/freecontact/input=freecontact_input_xsd \ --namespace-map http://rostlab.org/freecontact/output=freecontact_output_xsd \ --namespace-map http://bioxsd.org/BioXSD-1.1=BioXSD \ --generate-serialization --generate-doxygen \ --generate-polymorphic --polymorphic-type-all \ --omit-default-attributes \ --root-element-all \ --hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \ freecontact_output.xsd g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-BioXSD-1.1_xsd.o `test -f 'BioXSD-1.1_xsd.cxx' || echo './'`BioXSD-1.1_xsd.cxx g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo './'`freecontact_input_xsd.cxx g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo './'`_write_bioxsd.cpp In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:1507:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequence (::std::auto_ptr< sequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:1585:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:1665:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:1741:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:1817:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:1893:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] translationData (::std::auto_ptr< translationData_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:1969:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:1992:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] BiosequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:2105:45: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:2186:44: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:2267:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:2348:37: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:2611:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3051:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3109:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] len (::std::auto_ptr< len_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3287:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3366:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3442:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3500:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3567:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1507:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequence (::std::auto_ptr< sequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3877:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1585:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:3935:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bases (::std::auto_ptr< bases_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1665:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1741:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1817:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4110:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4186:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4262:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1893:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] translationData (::std::auto_ptr< translationData_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4338:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1969:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1992:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] BiosequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4414:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4490:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4566:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4644:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4720:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:4796:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2105:45: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2186:44: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2267:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:5064:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedDirection (::std::auto_ptr< reversedDirection_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2348:37: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2611:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3051:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:5589:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3109:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] len (::std::auto_ptr< len_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:5798:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:5938:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] properties (::std::auto_ptr< properties_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3287:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:6115:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3366:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3442:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3500:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:6385:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3567:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:6627:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:6703:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3877:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:6843:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceName (::std::auto_ptr< occurrenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:6919:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:6995:32: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3935:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bases (::std::auto_ptr< bases_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4110:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4186:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:7203:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] frame (::std::auto_ptr< frame_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:7279:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4262:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4338:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4414:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4490:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4566:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4644:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4720:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4796:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:7419:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignment_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:7588:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] referenceSequence (::std::auto_ptr< referenceSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5064:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedDirection (::std::auto_ptr< reversedDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:7742:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:7901:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] predicted (::std::auto_ptr< predicted_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:7977:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] experimental (::std::auto_ptr< experimental_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:8130:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5589:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:8217:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] MethodResult (::std::auto_ptr< method_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:8357:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:8444:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] Result (::std::auto_ptr< methodIdRef_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:8602:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:8678:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5798:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:8818:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5938:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] properties (::std::auto_ptr< properties_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6115:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:8973:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dataReference (::std::auto_ptr< dataReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:9113:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:9189:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reliability (::std::auto_ptr< reliability_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:9212:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ExperimentalEvidence (::std::auto_ptr< dataReference_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6385:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6627:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6703:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6843:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceName (::std::auto_ptr< occurrenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6919:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6995:32: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7203:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] frame (::std::auto_ptr< frame_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7279:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7419:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignment_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7588:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] referenceSequence (::std::auto_ptr< referenceSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:9566:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:9642:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] index (::std::auto_ptr< index_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:9718:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] unit (::std::auto_ptr< unit_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7742:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7901:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] predicted (::std::auto_ptr< predicted_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7977:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] experimental (::std::auto_ptr< experimental_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:9794:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8130:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8217:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] MethodResult (::std::auto_ptr< method_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:9974:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:10032:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] value (::std::auto_ptr< value_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8357:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:10108:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8444:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] Result (::std::auto_ptr< methodIdRef_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8602:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8678:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:10285:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8818:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:10361:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:10419:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:10679:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:10755:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:10813:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:11072:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:11148:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:11206:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:11465:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:11544:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:11620:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:11678:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:11745:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:12003:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:12061:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8973:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dataReference (::std::auto_ptr< dataReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:12377:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9113:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9189:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reliability (::std::auto_ptr< reliability_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9212:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ExperimentalEvidence (::std::auto_ptr< dataReference_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:12517:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPoint (::std::auto_ptr< nextPoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:12593:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPartition (::std::auto_ptr< nextPartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:12669:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePoint (::std::auto_ptr< samePoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:12745:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePartition (::std::auto_ptr< samePartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:12821:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] outside (::std::auto_ptr< outside_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:13071:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] correspondance (::std::auto_ptr< correspondance_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:13211:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:13351:39: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9566:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:13597:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9642:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] index (::std::auto_ptr< index_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9718:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] unit (::std::auto_ptr< unit_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9794:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:13832:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] geneticCode (::std::auto_ptr< geneticCode_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:13908:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:13984:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14226:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbName (::std::auto_ptr< dbName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14304:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbUri (::std::auto_ptr< dbUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14380:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbVersion (::std::auto_ptr< dbVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14511:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14587:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14663:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14739:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14815:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:14894:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15075:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15151:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryUri (::std::auto_ptr< entryUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15227:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryVersion (::std::auto_ptr< entryVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15305:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15481:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyName (::std::auto_ptr< ontologyName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15559:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyUri (::std::auto_ptr< ontologyUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15635:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9974:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10032:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] value (::std::auto_ptr< value_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15870:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10108:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:15946:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] conceptUri (::std::auto_ptr< conceptUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16028:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] term (::std::auto_ptr< term_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10285:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10361:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16207:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesName (::std::auto_ptr< speciesName_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10419:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16283:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesNote (::std::auto_ptr< speciesNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16459:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10679:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10755:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10813:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16538:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequence (::std::auto_ptr< supersequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16617:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequenceName (::std::auto_ptr< supersequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16693:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16769:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:16845:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17130:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17206:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] uri (::std::auto_ptr< uri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17282:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] version (::std::auto_ptr< version_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17358:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17434:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17510:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17586:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17662:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17738:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:17817:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11072:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11148:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11206:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11465:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11544:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11620:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11678:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11745:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12003:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12061:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12377:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12517:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPoint (::std::auto_ptr< nextPoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12593:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPartition (::std::auto_ptr< nextPartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12669:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePoint (::std::auto_ptr< samePoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12745:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePartition (::std::auto_ptr< samePartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12821:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] outside (::std::auto_ptr< outside_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:22916:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:23505:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13071:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] correspondance (::std::auto_ptr< correspondance_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:23645:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] missing (::std::auto_ptr< missing_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13211:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:23787:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:23961:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24019:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignedSequence (::std::auto_ptr< alignedSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24042:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignedSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24200:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24276:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13351:39: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24352:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24428:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24504:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24580:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24658:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13597:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24734:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24810:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:24970:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:25046:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:25133:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation (::std::auto_ptr< feature_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13832:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] geneticCode (::std::auto_ptr< geneticCode_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13908:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13984:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14226:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbName (::std::auto_ptr< dbName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14304:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbUri (::std::auto_ptr< dbUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14380:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbVersion (::std::auto_ptr< dbVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14511:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14587:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14663:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14739:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14815:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14894:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15075:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15151:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryUri (::std::auto_ptr< entryUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:25778:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15227:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryVersion (::std::auto_ptr< entryVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15305:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:25932:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] code (::std::auto_ptr< code_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15481:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyName (::std::auto_ptr< ontologyName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15559:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyUri (::std::auto_ptr< ontologyUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15635:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:26122:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] aminoacid (::std::auto_ptr< aminoacid_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:26253:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:26781:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:26857:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:26933:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:27009:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:27164:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:27316:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15870:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:27468:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:27620:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:27773:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:27925:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28001:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15946:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] conceptUri (::std::auto_ptr< conceptUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16028:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] term (::std::auto_ptr< term_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28088:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation1 (::std::auto_ptr< feature_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16207:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesName (::std::auto_ptr< speciesName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16283:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesNote (::std::auto_ptr< speciesNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16459:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16538:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequence (::std::auto_ptr< supersequence_type > p); ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28471:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28547:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16617:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequenceName (::std::auto_ptr< supersequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16693:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16769:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16845:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28623:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28699:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17130:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28775:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28851:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17206:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] uri (::std::auto_ptr< uri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:28927:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:29003:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17282:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] version (::std::auto_ptr< version_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17358:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17434:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17510:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:29244:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17586:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17662:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:29415:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17738:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17817:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from BioXSD-1.1_xsd.cxx:41:0: BioXSD-1.1_xsd.hxx:29826:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localIdRef (::std::auto_ptr< localIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1507:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequence (::std::auto_ptr< sequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1585:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1665:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1741:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1817:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1893:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] translationData (::std::auto_ptr< translationData_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1969:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1992:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] BiosequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:110:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequence (::std::auto_ptr< sequence_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:140:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:170:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:200:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2105:45: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:230:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:260:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] translationData (::std::auto_ptr< translationData_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:290:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2186:44: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:376:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2267:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2348:37: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:420:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:444:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] len (::std::auto_ptr< len_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:478:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:508:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:2611:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:538:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:562:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3051:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3109:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] len (::std::auto_ptr< len_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:592:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:634:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:22916:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3287:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:658:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bases (::std::auto_ptr< bases_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3366:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3442:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3500:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:692:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3567:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:722:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:752:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:782:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:812:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3877:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:3935:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bases (::std::auto_ptr< bases_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:842:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4110:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:872:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4186:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4262:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4338:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4414:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4490:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4566:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4644:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4720:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:4796:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:902:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:932:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23505:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:962:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23645:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] missing (::std::auto_ptr< missing_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23787:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:1046:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedDirection (::std::auto_ptr< reversedDirection_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1114:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23961:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24019:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignedSequence (::std::auto_ptr< alignedSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24042:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignedSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1180:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5064:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedDirection (::std::auto_ptr< reversedDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5589:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24200:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24276:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24352:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24428:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24504:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:1228:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] properties (::std::auto_ptr< properties_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5798:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24580:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:5938:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] properties (::std::auto_ptr< properties_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24658:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24734:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:1262:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24810:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6115:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1346:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > x) ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24970:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6385:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6627:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6703:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25046:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6843:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceName (::std::auto_ptr< occurrenceName_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:1398:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6919:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:6995:32: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1428:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25133:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation (::std::auto_ptr< feature_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1476:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceName (::std::auto_ptr< occurrenceName_type > x) ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7203:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] frame (::std::auto_ptr< frame_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7279:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7419:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignment_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1506:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1536:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1602:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] frame (::std::auto_ptr< frame_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7588:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] referenceSequence (::std::auto_ptr< referenceSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7742:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7901:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] predicted (::std::auto_ptr< predicted_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25778:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:7977:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] experimental (::std::auto_ptr< experimental_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25932:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] code (::std::auto_ptr< code_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1632:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26122:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] aminoacid (::std::auto_ptr< aminoacid_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8130:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26253:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8217:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] MethodResult (::std::auto_ptr< method_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1680:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignment_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8357:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8444:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] Result (::std::auto_ptr< methodIdRef_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26781:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:1708:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] referenceSequence (::std::auto_ptr< referenceSequence_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8602:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8678:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26857:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8818:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26933:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27009:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:8973:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dataReference (::std::auto_ptr< dataReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9113:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9189:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reliability (::std::auto_ptr< reliability_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9212:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ExperimentalEvidence (::std::auto_ptr< dataReference_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27164:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9566:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9642:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] index (::std::auto_ptr< index_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9718:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] unit (::std::auto_ptr< unit_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9794:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:9974:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:10032:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] value (::std::auto_ptr< value_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:10108:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:10285:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:10361:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:10419:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:10679:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:10755:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:10813:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27316:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27468:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27620:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11072:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27773:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11148:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11206:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27925:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28001:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11465:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11544:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28088:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation1 (::std::auto_ptr< feature_type >); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11620:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11678:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1778:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] predicted (::std::auto_ptr< predicted_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:11745:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12003:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12061:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28471:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28547:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28623:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12377:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28699:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28775:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:1808:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] experimental (::std::auto_ptr< experimental_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28851:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28927:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12517:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPoint (::std::auto_ptr< nextPoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29003:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:1836:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12593:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPartition (::std::auto_ptr< nextPartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12669:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePoint (::std::auto_ptr< samePoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12745:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePartition (::std::auto_ptr< samePartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1882:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:12821:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] outside (::std::auto_ptr< outside_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29244:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29415:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13071:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] correspondance (::std::auto_ptr< correspondance_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13211:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from freecontact_input_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29826:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localIdRef (::std::auto_ptr< localIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13351:39: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13597:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13832:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] geneticCode (::std::auto_ptr< geneticCode_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13908:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:13984:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1934:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14226:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbName (::std::auto_ptr< dbName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14304:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbUri (::std::auto_ptr< dbUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:1964:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14380:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbVersion (::std::auto_ptr< dbVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14511:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14587:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14663:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:2012:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14739:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14815:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2040:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dataReference (::std::auto_ptr< dataReference_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:14894:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2088:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:723:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] flat (::std::auto_ptr< flat_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:746:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] FcAlignment (::std::auto_ptr< flat_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15075:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15151:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryUri (::std::auto_ptr< entryUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15227:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryVersion (::std::auto_ptr< entryVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:847:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15305:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15481:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyName (::std::auto_ptr< ontologyName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:863:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15559:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyUri (::std::auto_ptr< ontologyUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15635:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:881:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:897:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:913:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:931:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:951:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:973:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:996:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:1013:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:1029:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:1047:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2118:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reliability (::std::auto_ptr< reliability_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:1061:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.cxx:41:0: freecontact_input_xsd.hxx:1078:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15870:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:15946:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] conceptUri (::std::auto_ptr< conceptUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16028:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] term (::std::auto_ptr< term_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16207:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesName (::std::auto_ptr< speciesName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2206:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16283:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesNote (::std::auto_ptr< speciesNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2236:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] index (::std::auto_ptr< index_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16459:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2266:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] unit (::std::auto_ptr< unit_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16538:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequence (::std::auto_ptr< supersequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16617:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequenceName (::std::auto_ptr< supersequenceName_type > p); ^~~~~~~~ BioXSD-1.1_xsd.cxx:2296:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16693:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2330:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16769:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:16845:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2354:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] value (::std::auto_ptr< value_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2384:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2418:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17130:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2448:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17206:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] uri (::std::auto_ptr< uri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17282:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] version (::std::auto_ptr< version_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17358:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17434:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17510:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17586:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17662:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17738:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:17817:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2472:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2516:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2546:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2570:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2614:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:67:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] flat (::std::auto_ptr< flat_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2644:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2668:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2712:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2742:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2772:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2796:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2826:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2870:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2894:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:2956:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3004:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPoint (::std::auto_ptr< nextPoint_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3034:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPartition (::std::auto_ptr< nextPartition_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3064:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePoint (::std::auto_ptr< samePoint_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3094:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePartition (::std::auto_ptr< samePartition_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3124:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] outside (::std::auto_ptr< outside_type > x) ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:22916:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3162:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] correspondance (::std::auto_ptr< correspondance_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3210:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3258:37: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23505:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3296:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3348:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] geneticCode (::std::auto_ptr< geneticCode_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3378:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3408:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3446:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbName (::std::auto_ptr< dbName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3476:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbUri (::std::auto_ptr< dbUri_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3506:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbVersion (::std::auto_ptr< dbVersion_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3560:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23645:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] missing (::std::auto_ptr< missing_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23787:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3590:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:23961:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24019:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignedSequence (::std::auto_ptr< alignedSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24042:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignedSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3620:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3650:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24200:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24276:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3680:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24352:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24428:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24504:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24580:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24658:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24734:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24810:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:24970:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:25046:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3710:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3744:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3774:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryUri (::std::auto_ptr< entryUri_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3804:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryVersion (::std::auto_ptr< entryVersion_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3834:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3868:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyName (::std::auto_ptr< ontologyName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3898:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyUri (::std::auto_ptr< ontologyUri_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3928:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:3986:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4016:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] conceptUri (::std::auto_ptr< conceptUri_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4046:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] term (::std::auto_ptr< term_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4080:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesName (::std::auto_ptr< speciesName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4110:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesNote (::std::auto_ptr< speciesNote_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4144:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4174:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequence (::std::auto_ptr< supersequence_type > x) ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:25133:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation (::std::auto_ptr< feature_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4204:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequenceName (::std::auto_ptr< supersequenceName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4234:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4264:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4294:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4358:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4388:15: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] uri (::std::auto_ptr< uri_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4418:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] version (::std::auto_ptr< version_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4448:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4478:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4508:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4538:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4568:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4598:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:4628:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:25778:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:25932:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] code (::std::auto_ptr< code_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:26122:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] aminoacid (::std::auto_ptr< aminoacid_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:26253:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5311:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5439:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5487:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] missing (::std::auto_ptr< missing_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5535:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:26781:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:26857:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:26933:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27009:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5569:32: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5593:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignedSequence (::std::auto_ptr< alignedSequence_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27164:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5627:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27316:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5657:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27468:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5687:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5717:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27620:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5747:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5777:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5807:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5837:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5867:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5895:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:5925:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6089:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27773:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:27925:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6117:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] code (::std::auto_ptr< code_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28001:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28088:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation1 (::std::auto_ptr< feature_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6195:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] aminoacid (::std::auto_ptr< aminoacid_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6249:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28471:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28547:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28623:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28699:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6359:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28775:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28851:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:28927:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:29003:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6389:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6419:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6449:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6477:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6505:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6533:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6561:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6589:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6617:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6647:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6707:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6737:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:29244:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6767:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6797:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:29415:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6827:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6857:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6887:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6917:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:6969:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7003:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_input_xsd.hxx:646:0, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:29826:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localIdRef (::std::auto_ptr< localIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7103:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localIdRef (::std::auto_ptr< localIdRef_type > x) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:97:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] FcAlignment (::std::auto_ptr< flat_type > flat) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:723:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] flat (::std::auto_ptr< flat_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:746:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] FcAlignment (::std::auto_ptr< flat_type >); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:847:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:863:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:881:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:897:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:913:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:931:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:951:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:973:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:996:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:1013:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:1029:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:1047:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:1061:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:20:0: freecontact_input_xsd.hxx:1078:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In member function ‘void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: freecontact_input_xsd.cxx:139:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:681:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:697:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:715:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:731:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:747:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:765:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:785:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:807:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:830:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:847:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:863:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:881:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:895:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:21:0: freecontact_output_xsd.hxx:912:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:150:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< flat_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:212:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In function ‘std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::flags, const properties&)’: freecontact_input_xsd.cxx:229:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:234:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7570:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In function ‘std::auto_ptr freecontact_input_xsd::alignment(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)’: freecontact_input_xsd.cxx:251:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from _write_bioxsd.cpp:22:0: ../lib/freecontact.h:69:54: warning: ignoring attributes on template argument ‘freecontact::__m128i {aka __vector(2) long long int}’ [-Wignored-attributes] class LIBFREEC_API ali_t : public std::vector<__m128i> ^ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:256:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In function ‘std::auto_ptr freecontact_input_xsd::alignment(const string&, xercesc_3_1::DOMErrorHandler&, xml_schema::flags, const properties&)’: freecontact_input_xsd.cxx:269:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:274:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:287:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::BiosequenceRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:7630:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:301:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:311:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:325:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ ../lib/freecontact.h: In constructor ‘freecontact::ali_t::ali_t(uint16_t)’: ../lib/freecontact.h:80:79: warning: ignoring attributes on template argument ‘freecontact::__m128i {aka __vector(2) long long int}’ [-Wignored-attributes] ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) ^ freecontact_input_xsd.cxx:340:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:351:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In function ‘std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_1::InputSource&, xml_schema::flags, const properties&)’: freecontact_input_xsd.cxx:364:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:369:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In function ‘std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_1::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)’: freecontact_input_xsd.cxx:382:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:387:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In function ‘std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_1::InputSource&, xercesc_3_1::DOMErrorHandler&, xml_schema::flags, const properties&)’: freecontact_input_xsd.cxx:400:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:405:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In function ‘std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_1::DOMDocument&, xml_schema::flags, const properties&)’: freecontact_input_xsd.cxx:415:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:424:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:433:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: At global scope: freecontact_input_xsd.cxx:451:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx: In function ‘std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)’: freecontact_input_xsd.cxx:473:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_input_xsd.cxx:483:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_input_xsd.hxx:66, from freecontact_input_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7641:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7658:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7669:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< species_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7686:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7697:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< reference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7714:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7725:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< name_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7742:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7753:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< note_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7770:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7781:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< translationData_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7798:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7809:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< inlineBaseQuality_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:7880:43: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7929:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp: At global scope: _write_bioxsd.cpp:30:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr _get_bxScore(const fc::contact_t& __ct, const std::string& __scid); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp: In function ‘std::__cxx11::string _xml_flatali(std::istream&, bool)’: _write_bioxsd.cpp:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr xml( fix::alignment(__is) ); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:7978:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] NucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp: In function ‘void _write_bioxsd(const freecontact::ali_t&, const resn_mapper_t&, const std::map, std::vector >&, bool)’: _write_bioxsd.cpp:53:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr seqSeg_p(new BioXSD::SequenceSegment()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8027:35: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] AminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:56:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr seqPos_p(new BioXSD::SequencePosition()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:59:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr seqRef_p(new BioXSD::SequenceReference()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:63:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr seqRec_p( new BioXSD::GeneralAminoacidSequenceRecord( BioXSD::GeneralAminoacidSequence( ucq ))); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::BiosequenceAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:8118:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8127:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< alignedBy_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:67:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr refSeq_p(new BioXSD::referenceSequence()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr metCatCon_p(new BioXSD::SemanticConcept()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8143:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8152:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< alignedSequence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8168:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8179:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< note_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:79:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr metCit_p(new BioXSD::EntryReference()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:82:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr method_p(new BioXSD::method1("freecontact", "M#fc")); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:86:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr sc_l1_p(new BioXSD::scoreType("S#l1")); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:88:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr metCit_p(new BioXSD::EntryReference()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:94:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr method_p(new BioXSD::Method("l1-norm")); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:100:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr sc_MI_p(new BioXSD::scoreType("S#MI")); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr metCit_p(new BioXSD::EntryReference()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr method_p(new BioXSD::Method("Mutual information")); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr sc_fr_p(new BioXSD::scoreType("S#fr")); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:116:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr metCit_p(new BioXSD::EntryReference()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:122:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr method_p(new BioXSD::Method("Frobenius norm")); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:128:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr featCon_p(new BioXSD::SemanticConcept()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:135:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr feat_p(new BioXSD::FeatureType()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:139:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr cref_p(new BioXSD::condensedReferences1()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:142:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ann_p(new BioXSD::annotation1(feat_p)); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:156:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr pt1_p(new BioXSD::SequencePoint()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:158:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr pt2_p(new BioXSD::SequencePoint()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:161:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr pos_p(new BioXSD::SequencePosition()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:165:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr occ_p(new BioXSD::occurrence()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp:177:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr occRef_p(new BioXSD::blockWithOccurrenceReferences()); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp: At global scope: _write_bioxsd.cpp:199:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr _get_bxScore( const fc::contact_t& __ct, const std::string& __scid ) ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ _write_bioxsd.cpp: In function ‘std::auto_ptr _get_bxScore(const freecontact::contact_t&, const string&)’: _write_bioxsd.cpp:201:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr MI_score_p(new BioXSD::Score( bo::str(bo::format("%g") % __ct.score) )); ^~~~~~~~ In file included from /usr/include/c++/6/bits/locale_conv.h:41:0, from /usr/include/c++/6/locale:43, from /usr/include/boost/format.hpp:23, from _write_bioxsd.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::AlignedBiosequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:8924:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8935:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< localAlignmentPosition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8952:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8963:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceRecord_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8980:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:8991:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9008:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9019:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9036:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9047:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< species_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9064:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9075:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< genomeBuild_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9092:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9103:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< chromosome_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9120:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9131:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< subsequencePosition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9148:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9159:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< variantAccession_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9176:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9187:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< variantNote_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9204:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9213:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< gap_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9229:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9238:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< insert_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9254:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9263:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< frameshift_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9279:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9290:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< reversedDirection_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9307:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9316:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceScore_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:9610:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9621:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< name_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9638:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9647:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< equalConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9663:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9672:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< equalAlias_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9688:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9699:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< className_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9716:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9725:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< classConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9741:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9752:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< properties_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:9866:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9877:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< specificFeatureName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9894:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9903:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< specificFeatureConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9919:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9928:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< specificFeatureAlias_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9944:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9953:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< databaseEntry_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9969:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9980:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< note_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:9998:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< association_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:10123:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10134:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< appliesToWholeSequence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10151:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10162:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< position_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10179:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10188:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< occurrenceEntryReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10204:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10215:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< occurrenceName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10232:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10243:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< occurrenceNote_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10260:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10271:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< featureTypeDetails_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10288:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10297:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< score_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10313:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10322:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< evidence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10339:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< frame_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10352:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10363:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< phase_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10381:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< variation_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10392:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< alignment_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:10460:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:10509:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< referenceSequence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10523:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< annotation_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10534:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::Evidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:10633:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10644:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< predicted_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10661:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10672:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< experimental_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:10733:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] MethodResult (::std::auto_ptr< method_type > method) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::MethodResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:10779:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< method_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10792:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10801:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< score_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:10868:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] Result (::std::auto_ptr< methodIdRef_type > methodIdRef) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:10913:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10924:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< methodIdRef_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10941:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:10950:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< score_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:11060:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11071:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< method_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11088:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11099:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< methodIdRef_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11116:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11125:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< score_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11141:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11152:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< verdict_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:11217:32: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ExperimentalEvidence (::std::auto_ptr< dataReference_type > dataReference) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::ExperimentalEvidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:11268:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11279:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< dataReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11296:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11305:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< citation_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11321:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11332:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< verdict_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11349:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11360:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< reliability_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::ScoreType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:11482:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11491:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< concept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11507:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11516:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< method_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11532:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11541:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< methodIdRef_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::Score::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:11679:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:11690:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< position_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::GeneralSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:12613:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12622:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< point_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12638:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12649:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< insertion_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12666:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12675:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< segment_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12691:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12702:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< nextPoint_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12719:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12730:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< nextPartition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12747:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12758:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< samePoint_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12775:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12786:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< samePartition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12803:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12814:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< outside_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:12970:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12981:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< correspondance_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:12998:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13007:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< point_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13023:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13034:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< insertion_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13051:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13060:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< segment_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13076:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13087:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< explicitSequenceReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:13231:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13242:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< reference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13260:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< codon_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:13354:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13365:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< geneticCode_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13382:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13393:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< phase_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13410:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:13421:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< reversedTranslationDirection_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:14184:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:14195:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< subsequencePosition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:14212:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:14223:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< supersequence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:14240:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:14251:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< supersequenceName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:14410:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:14419:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< categoryConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:14435:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:14444:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< citation_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:17632:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17643:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< relationName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17660:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17669:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< relationConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17685:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17694:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< associatedConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17710:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17719:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< associatedDatabaseEntry_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17735:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17744:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< associatedDatabase_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17760:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17769:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< associatedFeature_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:17927:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17938:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< canonicalVariant_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17955:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17964:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< variant_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17980:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:17991:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< missing_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18008:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18017:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< score_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18033:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18044:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< position_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:18102:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:18148:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< alignmentOfReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18161:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18172:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< alignedSequence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::referenceSequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:18292:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18303:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceRecord_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18320:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18331:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceReference_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18348:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18359:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18376:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18387:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< species_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18404:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18415:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< genomeBuild_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18432:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18443:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< chromosome_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18460:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18471:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< subsequencePosition_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18488:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18499:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< variantAccession_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18516:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18527:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< variantNote_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:18590:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation (::std::auto_ptr< feature_type > feature) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::annotation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:18638:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18649:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< feature_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18667:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< condensedReferences_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18680:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18689:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< occurrence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::blockWithOccurrenceReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:18801:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< database_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18812:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ontology_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18823:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< semanticConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18834:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< method_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18845:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< scoreType_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:18856:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< annotation_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::alignmentOfReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:19177:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19186:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< gap_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19202:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19211:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< insert_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19227:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19236:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< frameshift_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19252:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19261:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< sequenceScore_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::condensedReferences::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:19360:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19371:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< method_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19388:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19399:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ontology_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19416:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19427:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< database_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19444:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:19455:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< scoreType_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:19944:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation1 (::std::auto_ptr< feature_type > feature) ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::annotation1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:19992:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20003:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< feature_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20021:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< condensedReferences_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20035:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< occurrence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::condensedReferences1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:20290:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20301:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< method_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20318:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20329:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< methodIdRef_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20346:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20357:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ontology_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20374:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20385:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ontologyIdRef_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20402:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20413:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< database_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20430:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20441:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< databaseIdRef_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20458:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20469:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< scoreType_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20486:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20497:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< scoreTypeIdRef_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::occurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:20598:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< association_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::association1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:20702:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20713:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< relationName_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20730:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20739:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< relationConcept_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20755:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20764:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< relationConceptIdRef_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20781:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< associatedFeatureOccurrence_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function ‘void BioXSD::associatedFeatureOccurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)’: BioXSD-1.1_xsd.cxx:20868:16: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ BioXSD-1.1_xsd.cxx:20877:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< score_type > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from BioXSD-1.1_xsd.hxx:66, from BioXSD-1.1_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact.cpp:25:0: ../lib/freecontact.h:69:54: warning: ignoring attributes on template argument ‘freecontact::__m128i {aka __vector(2) long long int}’ [-Wignored-attributes] class LIBFREEC_API ali_t : public std::vector<__m128i> ^ ../lib/freecontact.h: In constructor ‘freecontact::ali_t::ali_t(uint16_t)’: ../lib/freecontact.h:80:79: warning: ignoring attributes on template argument ‘freecontact::__m128i {aka __vector(2) long long int}’ [-Wignored-attributes] ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) ^ freecontact.cpp: In function ‘int main(int, char**)’: freecontact.cpp:165:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ali_ifs_p; ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:18, from /usr/include/boost/function/function1.hpp:11, from /usr/include/boost/program_options/value_semantic.hpp:13, from /usr/include/boost/program_options/options_description.hpp:13, from /usr/include/boost/program_options.hpp:15, from freecontact.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact.cpp:169:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:18, from /usr/include/boost/function/function1.hpp:11, from /usr/include/boost/program_options/value_semantic.hpp:13, from /usr/include/boost/program_options/options_description.hpp:13, from /usr/include/boost/program_options.hpp:15, from freecontact.cpp:17: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_output_xsd.o `test -f 'freecontact_output_xsd.cxx' || echo './'`freecontact_output_xsd.cxx In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1507:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequence (::std::auto_ptr< sequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1585:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1665:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1741:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1817:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1893:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] translationData (::std::auto_ptr< translationData_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1969:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:1992:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] BiosequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2105:45: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2186:44: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2267:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2348:37: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:2611:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3051:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3109:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] len (::std::auto_ptr< len_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3287:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3366:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3442:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3500:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3567:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3877:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:3935:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bases (::std::auto_ptr< bases_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4110:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4186:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4262:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4338:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4414:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4490:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4566:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4644:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4720:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:4796:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5064:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedDirection (::std::auto_ptr< reversedDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5589:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5798:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] className (::std::auto_ptr< className_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:5938:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] properties (::std::auto_ptr< properties_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6115:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6385:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6627:36: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6703:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6843:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceName (::std::auto_ptr< occurrenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6919:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:6995:32: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7203:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] frame (::std::auto_ptr< frame_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7279:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7419:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignment_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7588:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] referenceSequence (::std::auto_ptr< referenceSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7742:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] FeatureRecord (::std::auto_ptr< referenceSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7901:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] predicted (::std::auto_ptr< predicted_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:7977:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] experimental (::std::auto_ptr< experimental_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8130:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8217:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] MethodResult (::std::auto_ptr< method_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8357:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8444:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] Result (::std::auto_ptr< methodIdRef_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8602:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8678:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8818:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:8973:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dataReference (::std::auto_ptr< dataReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9113:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] verdict (::std::auto_ptr< verdict_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9189:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reliability (::std::auto_ptr< reliability_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9212:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ExperimentalEvidence (::std::auto_ptr< dataReference_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9566:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9642:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] index (::std::auto_ptr< index_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9718:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] unit (::std::auto_ptr< unit_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9794:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:9974:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10032:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] value (::std::auto_ptr< value_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10108:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10285:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10361:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10419:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10679:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10755:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:10813:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11072:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] pos (::std::auto_ptr< pos_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11148:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11206:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11465:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] min (::std::auto_ptr< min_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11544:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11620:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] strand (::std::auto_ptr< strand_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11678:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] minCertainty (::std::auto_ptr< minCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:11745:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] maxCertainty (::std::auto_ptr< maxCertainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12003:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] max (::std::auto_ptr< max_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12061:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] certainty (::std::auto_ptr< certainty_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12377:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12517:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPoint (::std::auto_ptr< nextPoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12593:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] nextPartition (::std::auto_ptr< nextPartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12669:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePoint (::std::auto_ptr< samePoint_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12745:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] samePartition (::std::auto_ptr< samePartition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:12821:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] outside (::std::auto_ptr< outside_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13071:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] correspondance (::std::auto_ptr< correspondance_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13211:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] insertion (::std::auto_ptr< insertion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13351:39: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13597:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reference (::std::auto_ptr< reference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13832:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] geneticCode (::std::auto_ptr< geneticCode_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13908:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] phase (::std::auto_ptr< phase_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:13984:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14226:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbName (::std::auto_ptr< dbName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14304:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbUri (::std::auto_ptr< dbUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14380:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] dbVersion (::std::auto_ptr< dbVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14511:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14587:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14663:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14739:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14815:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:14894:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15075:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15151:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryUri (::std::auto_ptr< entryUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15227:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] entryVersion (::std::auto_ptr< entryVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15305:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15481:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyName (::std::auto_ptr< ontologyName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15559:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyUri (::std::auto_ptr< ontologyUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15635:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15870:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] accession (::std::auto_ptr< accession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:15946:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] conceptUri (::std::auto_ptr< conceptUri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16028:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] term (::std::auto_ptr< term_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16207:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesName (::std::auto_ptr< speciesName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16283:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] speciesNote (::std::auto_ptr< speciesNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16459:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16538:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequence (::std::auto_ptr< supersequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16617:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] supersequenceName (::std::auto_ptr< supersequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16693:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16769:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:16845:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17130:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] name (::std::auto_ptr< name_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17206:17: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] uri (::std::auto_ptr< uri_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17282:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] version (::std::auto_ptr< version_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17358:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] date (::std::auto_ptr< date_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17434:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdl (::std::auto_ptr< wsdl_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17510:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlService (::std::auto_ptr< wsdlService_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17586:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] wsdlPort (::std::auto_ptr< wsdlPort_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17662:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17738:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:17817:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] webserviceDate (::std::auto_ptr< webserviceDate_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:22916:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23505:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23645:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] missing (::std::auto_ptr< missing_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23787:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] position (::std::auto_ptr< position_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:23961:34: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24019:29: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignedSequence (::std::auto_ptr< alignedSequence_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24042:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] alignment (::std::auto_ptr< alignedSequence_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24200:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24276:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceReference (::std::auto_ptr< sequenceReference_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24352:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] sequenceName (::std::auto_ptr< sequenceName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24428:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] species (::std::auto_ptr< species_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24504:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] genomeBuild (::std::auto_ptr< genomeBuild_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24580:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] chromosome (::std::auto_ptr< chromosome_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24658:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24734:30: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantAccession (::std::auto_ptr< variantAccession_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24810:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] variantNote (::std::auto_ptr< variantNote_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:24970:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25046:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25133:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation (::std::auto_ptr< feature_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25778:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:25932:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] code (::std::auto_ptr< code_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26122:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] aminoacid (::std::auto_ptr< aminoacid_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26253:18: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] note (::std::auto_ptr< note_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26781:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26857:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:26933:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27009:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27164:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27316:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27468:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27620:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27773:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:27925:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] feature (::std::auto_ptr< feature_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28001:33: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] condensedReferences (::std::auto_ptr< condensedReferences_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28088:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] annotation1 (::std::auto_ptr< feature_type >); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28471:20: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] method (::std::auto_ptr< method_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28547:25: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] methodIdRef (::std::auto_ptr< methodIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28623:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontology (::std::auto_ptr< ontology_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28699:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28775:22: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] database (::std::auto_ptr< database_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28851:27: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:28927:23: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreType (::std::auto_ptr< scoreType_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29003:28: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29244:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localId (::std::auto_ptr< localId_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29415:26: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] relationName (::std::auto_ptr< relationName_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.hxx:645:0, from freecontact_output_xsd.cxx:41: BioXSD-1.1_xsd.hxx:29826:24: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] localIdRef (::std::auto_ptr< localIdRef_type > p); ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:681:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:697:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:715:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:731:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:747:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:765:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:785:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:807:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:830:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:847:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:863:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:881:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:895:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from freecontact_output_xsd.cxx:41:0: freecontact_output_xsd.hxx:912:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:68:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: In function ‘std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::flags, const properties&)’: freecontact_output_xsd.cxx:85:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:90:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: In function ‘std::auto_ptr freecontact_output_xsd::contactMap(const string&, xml_schema::error_handler&, xml_schema::flags, const properties&)’: freecontact_output_xsd.cxx:107:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:112:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: In function ‘std::auto_ptr freecontact_output_xsd::contactMap(const string&, xercesc_3_1::DOMErrorHandler&, xml_schema::flags, const properties&)’: freecontact_output_xsd.cxx:125:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:130:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:143:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:157:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:167:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:181:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:196:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:207:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: In function ‘std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_1::InputSource&, xml_schema::flags, const properties&)’: freecontact_output_xsd.cxx:220:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:225:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: In function ‘std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_1::InputSource&, xml_schema::error_handler&, xml_schema::flags, const properties&)’: freecontact_output_xsd.cxx:238:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:243:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: In function ‘std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_1::InputSource&, xercesc_3_1::DOMErrorHandler&, xml_schema::flags, const properties&)’: freecontact_output_xsd.cxx:256:19: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:261:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: In function ‘std::auto_ptr freecontact_output_xsd::contactMap(const xercesc_3_1::DOMDocument&, xml_schema::flags, const properties&)’: freecontact_output_xsd.cxx:271:21: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:280:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:289:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:307:10: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx: In function ‘std::auto_ptr freecontact_output_xsd::contactMap(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const properties&)’: freecontact_output_xsd.cxx:329:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ freecontact_output_xsd.cxx:339:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] ::std::auto_ptr< ::BioXSD::FeatureRecord > r ( ^~~~~~~~ In file included from /usr/include/c++/6/memory:81:0, from /usr/include/xsd/cxx/tree/elements.hxx:23, from freecontact_output_xsd.hxx:66, from freecontact_output_xsd.cxx:41: /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la libtool: link: g++ -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -L/usr/lib -lboost_program_options -lxerces-c ../lib/.libs/libfreecontact.so -pthread -fopenmp make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a -O--parallel make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in lib make[2]: Entering directory '/<>/lib' make[2]: Leaving directory '/<>/lib' Making check in src make[2]: Entering directory '/<>/src' make test_freecontact make[3]: Entering directory '/<>/src' make[3]: Nothing to be done for 'test_freecontact'. make[3]: Leaving directory '/<>/src' make check-TESTS make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' PASS: test_freecontact ============================================================================ Testsuite summary for freecontact 1.0.21 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --parallel --with bash-completion --with autoreconf dh_testroot -a -O--parallel dh_prep -a -O--parallel dh_auto_install -a -O--parallel make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in lib make[2]: Entering directory '/<>/lib' make[3]: Entering directory '/<>/lib' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include' /bin/bash ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' /usr/bin/install -c -m 644 freecontact.h '/<>/debian/tmp/usr/include' libtool: install: /usr/bin/install -c .libs/libfreecontact.so.0.0.0 /<>/debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so.0 || { rm -f libfreecontact.so.0 && ln -s libfreecontact.so.0.0.0 libfreecontact.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so || { rm -f libfreecontact.so && ln -s libfreecontact.so.0.0.0 libfreecontact.so; }; }) libtool: install: /usr/bin/install -c .libs/libfreecontact.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.la libtool: install: /usr/bin/install -c .libs/libfreecontact.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.a libtool: install: ranlib /<>/debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' make[3]: Leaving directory '/<>/lib' make[2]: Leaving directory '/<>/lib' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/mkdir -p '/<>/debian/tmp/usr/share/freecontact' /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/freecontact/examples' /bin/mkdir -p '/<>/debian/tmp/usr/share/freecontact' /usr/bin/install -c -m 644 BioXSD-1.1.xsd freecontact_input.xsd freecontact_output.xsd '/<>/debian/tmp/usr/share/freecontact' /bin/bash ../libtool --mode=install /usr/bin/install -c freecontact '/<>/debian/tmp/usr/bin' /usr/bin/install -c a2m2aln '/<>/debian/tmp/usr/share/freecontact' /usr/bin/install -c -m 644 demo_1000.aln demo_1000.psicov.50 PF00071_v25_999.fa PF00071_v25_999.xml PF00071_v25_999.evfold.50 PF00071_v25_999.evfold.50.xml '/<>/debian/tmp/usr/share/doc/freecontact/examples' /bin/mkdir -p '/<>/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 freecontact.1 '/<>/debian/tmp/usr/share/man/man1' libtool: warning: '../lib/libfreecontact.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/freecontact /<>/debian/tmp/usr/bin/freecontact make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --devunversioned \ --override s/libblas3-dev/libblas-dev/ \ --v5 \ --override s/libgfortran3-dev/libgfortran-5-dev/ \ --override s/libquadmath0-dev/libgcc-5-dev/ \ --override s/liblapack3-dev/liblapack-dev/ \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libblas-dev package exists. --> libgfortran-5-dev package exists. --> liblapack-dev package exists. set -e install -d -m 755 debian/libfreecontact-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libfreecontact0v5/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.a debian/libfreecontact-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.so debian/libfreecontact-dev/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.so.0 debian/libfreecontact0v5/usr/lib/i386-linux-gnu mv /<>/debian/tmp/usr/lib/i386-linux-gnu/libfreecontact.so.0.0.0 debian/libfreecontact0v5/usr/lib/i386-linux-gnu PKGDEV=libfreecontact-dev PKGSHL=libfreecontact0v5 install -d -m 755 debian/libfreecontact-dev/usr/include mv debian/tmp/usr/include/freecontact.h debian/libfreecontact-dev/usr/include make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs find debian -name jquery.js -delete make[1]: Leaving directory '/<>' dh_installchangelogs -a -O--parallel dh_installman -a -O--parallel debian/rules override_dh_bash-completion make[1]: Entering directory '/<>' echo "Until bug #668254 is fixed we need to override this" Until bug #668254 is fixed we need to override this mkdir -p debian/freecontact/usr/share/bash-completion/completions cp -a freecontact.bash-completion debian/freecontact/usr/share/bash-completion/completions make[1]: Leaving directory '/<>' dh_perl -a -O--parallel dh_link -a -O--parallel dh_strip_nondeterminism -a -O--parallel debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xlibfreecontact.tag -Xdemo_1000.aln -XPF00071_v25_999.fa -XPF00071_v25_999.xml make[1]: Leaving directory '/<>' dh_fixperms -a -O--parallel debian/rules override_dh_strip make[1]: Entering directory '/<>' dh_strip --dbg-package=libfreecontact0-dbg dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: freecontact libfreecontact0v5 libfreecontact-dev libfreecontact0-dbg dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given dh_strip debug symbol extraction: packages to act on: freecontact libfreecontact0v5 libfreecontact-dev libfreecontact0-dbg dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 we have -dbg package(s), not installing anything into ddeb find: ‘/<>/debian/freecontact-dbgsym’: No such file or directory dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package freecontact: unknown substitution variable ${Description} dpkg-gencontrol: warning: package freecontact: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 we have -dbg package(s), not installing anything into ddeb find: ‘/<>/debian/libfreecontact0v5-dbgsym’: No such file or directory dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libfreecontact0v5: unknown substitution variable ${Description} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 libfreecontact-dev has no unstripped objects, ignoring find: ‘/<>/debian/libfreecontact-dev-dbgsym’: No such file or directory dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libfreecontact-dev: unknown substitution variable ${Description} dpkg-gencontrol: warning: package libfreecontact-dev: unused substitution variable ${devlibs:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol make[1]: Leaving directory '/<>' dh_makeshlibs -a -O--parallel dh_shlibdeps -a -O--parallel dh_installdeb -a -O--parallel debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libfreecontact-dev: unused substitution variable ${devlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform i386: freecontact libfreecontact0v5 libfreecontact-dev libfreecontact0-dbg dh_gencontrol debug symbol wrapper: packages to act on: freecontact libfreecontact0v5 libfreecontact-dev libfreecontact0-dbg dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package freecontact (pkgdir debian/freecontact, ddeb package dir debian/freecontact-dbgsym) dh_gencontrol debug symbol wrapper: building freecontact-dbgsym_1.0.21-4build3_i386.ddeb dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-4build3_i386.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile freecontact-dbgsym_1.0.21-4build3_i386.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package libfreecontact0v5 (pkgdir debian/libfreecontact0v5, ddeb package dir debian/libfreecontact0v5-dbgsym) dh_gencontrol debug symbol wrapper: building libfreecontact0v5-dbgsym_1.0.21-4build3_i386.ddeb dpkg-deb: building package 'libfreecontact0v5-dbgsym' in '../libfreecontact0v5-dbgsym_1.0.21-4build3_i386.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile libfreecontact0v5-dbgsym_1.0.21-4build3_i386.ddeb libs extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package libfreecontact-dev (pkgdir debian/libfreecontact-dev, ddeb package dir debian/libfreecontact-dev-dbgsym) dh_gencontrol debug symbol wrapper: building libfreecontact-dev-dbgsym_1.0.21-4build3_i386.ddeb dpkg-deb: building package 'libfreecontact-dev-dbgsym' in '../libfreecontact-dev-dbgsym_1.0.21-4build3_i386.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile libfreecontact-dev-dbgsym_1.0.21-4build3_i386.ddeb libdevel extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe make[1]: Leaving directory '/<>' dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libfreecontact0-dbg (in debian/libfreecontact0-dbg); do_strip: , oemstrip: pkgstriptranslations: processing libfreecontact-dev (in debian/libfreecontact-dev); do_strip: , oemstrip: pkgstriptranslations: processing libfreecontact0v5 (in debian/libfreecontact0v5); do_strip: , oemstrip: pkgstriptranslations: processing freecontact (in debian/freecontact); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libfreecontact0-dbg/DEBIAN/control, package libfreecontact0-dbg, directory debian/libfreecontact0-dbg INFO: pkgstripfiles: waiting for lock (libfreecontact0-dbg) ... pkgstripfiles: processing control file: debian/libfreecontact-dev/DEBIAN/control, package libfreecontact-dev, directory debian/libfreecontact-dev INFO: pkgstripfiles: waiting for lock (libfreecontact-dev) ... INFO: pkgstripfiles: waiting for lock (libfreecontact0-dbg) ... INFO: pkgstripfiles: waiting for lock (libfreecontact-dev) ... INFO: pkgstripfiles: waiting for lock (libfreecontact0-dbg) ... INFO: pkgstripfiles: waiting for lock (libfreecontact-dev) ... INFO: pkgstripfiles: waiting for lock (libfreecontact0-dbg) ... INFO: pkgstripfiles: waiting for lock (libfreecontact-dev) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com INFO: pkgstripfiles: waiting for lock (libfreecontact0-dbg) ... INFO: pkgstripfiles: waiting for lock (libfreecontact-dev) ... pkgstripfiles: processing control file: debian/freecontact/DEBIAN/control, package freecontact, directory debian/freecontact Searching for duplicated docs in dependency libfreecontact0v5... pkgstripfiles: processing control file: debian/libfreecontact0v5/DEBIAN/control, package libfreecontact0v5, directory debian/libfreecontact0v5 INFO: pkgstripfiles: waiting for lock (libfreecontact0v5) ... symlinking changelog.Debian.gz in freecontact to file in libfreecontact0v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package freecontact ... pkgstripfiles: No PNG files. dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-4build3_i386.deb'. INFO: pkgstripfiles: waiting for lock (libfreecontact0-dbg) ... INFO: pkgstripfiles: waiting for lock (libfreecontact-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libfreecontact0v5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libfreecontact0v5' in '../libfreecontact0v5_1.0.21-4build3_i386.deb'. INFO: pkgstripfiles: waiting for lock (libfreecontact0-dbg) ... Searching for duplicated docs in dependency libfreecontact0v5... symlinking changelog.Debian.gz in libfreecontact-dev to file in libfreecontact0v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libfreecontact-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-4build3_i386.deb'. Searching for duplicated docs in dependency libfreecontact0v5... symlinking changelog.Debian.gz in libfreecontact0-dbg to file in libfreecontact0v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libfreecontact0-dbg ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libfreecontact0-dbg' in '../libfreecontact0-dbg_1.0.21-4build3_i386.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../freecontact_1.0.21-4build3_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build freecontact-1.0.21 dpkg-source: info: using options from freecontact-1.0.21/debian/source/options: --single-debian-patch --extend-diff-ignore=(^|/)(config.guess|config.sub|INSTALL)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161101-1733 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ freecontact_1.0.21-4build3_i386.changes: ---------------------------------------- Format: 1.8 Date: Tue, 01 Nov 2016 16:20:10 +0000 Source: freecontact Binary: freecontact libfreecontact0v5 libfreecontact-dev libfreecontact0-dbg libfreecontact-doc Architecture: i386 Version: 1.0.21-4build3 Distribution: zesty-proposed Urgency: high Maintainer: Launchpad Build Daemon Changed-By: Dimitri John Ledkov Description: freecontact - fast protein contact predictor libfreecontact-dev - fast protein contact predictor library - development files libfreecontact-doc - documentation for libfreecontact libfreecontact0-dbg - debugging symbols for libfreecontact libfreecontact0v5 - fast protein contact predictor library Changes: freecontact (1.0.21-4build3) zesty; urgency=high . * No change rebuild against boost1.62. Checksums-Sha1: 041a23c4e9da02aa1df8d809f8ed2679c3be93b8 834 freecontact-dbgsym_1.0.21-4build3_i386.ddeb d10f8bb8c26ce635ce32bb3b6f5d506f582c67b5 316598 freecontact_1.0.21-4build3_i386.deb 75658443be9d434cacb475a0a107925b4ed350a3 850 libfreecontact-dev-dbgsym_1.0.21-4build3_i386.ddeb a2ae1cf7fb6c194d5ff294572846382a02bffcf3 63038 libfreecontact-dev_1.0.21-4build3_i386.deb e6ef6ab1e56f6a3202176b90ce8e6bba4d895aeb 3153792 libfreecontact0-dbg_1.0.21-4build3_i386.deb 824acb614d60af7cf6fddeaed49bb4b7c1860c7a 848 libfreecontact0v5-dbgsym_1.0.21-4build3_i386.ddeb 4da4d23f7aea1c6e433834d97aa8e6c332033bb5 59048 libfreecontact0v5_1.0.21-4build3_i386.deb Checksums-Sha256: 457cafed78524e5352d1f4f27448125bdad9b22aac1703df299aeaf5d27d76f5 834 freecontact-dbgsym_1.0.21-4build3_i386.ddeb e2b350c0cea81bead7e627f16f322ca42f8fcde098273885fad37c36e5c01d7c 316598 freecontact_1.0.21-4build3_i386.deb 8d0706ded002a82aeb636847549fb08c7aeed64c74b180cda36b308e7361fa3c 850 libfreecontact-dev-dbgsym_1.0.21-4build3_i386.ddeb 0d8721035f5df2453c69d4eff78b2ff125a293963c4d4c12ab0df232b10a1a73 63038 libfreecontact-dev_1.0.21-4build3_i386.deb 2ede3c050609e0a37ae5442163e4f321a2dc64ef3463c6f06bb3f8b1cec95b84 3153792 libfreecontact0-dbg_1.0.21-4build3_i386.deb 68fdb11ed147223dc067f22f473c648e7a1654426707e5961bda31cf63abb5d3 848 libfreecontact0v5-dbgsym_1.0.21-4build3_i386.ddeb fb39400368ca8bb67b91bcfcf9d6d9b63fac7898873b19e8e501965e8626ed86 59048 libfreecontact0v5_1.0.21-4build3_i386.deb Files: bc88258d5d65b5dbf5489fb52dd9eb1a 834 science extra freecontact-dbgsym_1.0.21-4build3_i386.ddeb 10e988c4f89bb2cfda3c1c3a794b6f59 316598 science optional freecontact_1.0.21-4build3_i386.deb 52b780dde93b3d9524a9e5a249500974 850 libdevel extra libfreecontact-dev-dbgsym_1.0.21-4build3_i386.ddeb 8ee50f8594a44be6c2f61a5b8d0aa85a 63038 libdevel optional libfreecontact-dev_1.0.21-4build3_i386.deb 8501ea53da41da15fda2add5f06303b3 3153792 debug extra libfreecontact0-dbg_1.0.21-4build3_i386.deb ea24545e85219421a22af6184dfa00e5 848 libs extra libfreecontact0v5-dbgsym_1.0.21-4build3_i386.ddeb 3576a69965612abb77dae68393265cdc 59048 libs optional libfreecontact0v5_1.0.21-4build3_i386.deb Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ freecontact_1.0.21-4build3_i386.deb ----------------------------------- new debian package, version 2.0. size 316598 bytes: control archive=1466 bytes. 1501 bytes, 31 lines control 1132 bytes, 14 lines md5sums Package: freecontact Version: 1.0.21-4build3 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 1522 Depends: libboost-program-options1.62.0, libc6 (>= 2.4), libfreecontact0v5, libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), libxerces-c3.1, perl:any Suggests: bash-completion, hhsuite, hmmer Section: science Priority: optional Homepage: http://rostlab.org/ Description: fast protein contact predictor FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package contains the command line tool freecontact(1). Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2016-11-01 16:20 ./ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/bin/ -rwxr-xr-x root/root 964812 2016-11-01 16:20 ./usr/bin/freecontact drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 1408 2013-07-15 13:07 ./usr/share/bash-completion/completions/freecontact.bash-completion drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/freecontact/ lrwxrwxrwx root/root 0 2016-11-01 16:20 ./usr/share/doc/freecontact/changelog.Debian.gz -> ../libfreecontact0v5/changelog.Debian.gz -rw-r--r-- root/root 1341 2015-08-19 20:34 ./usr/share/doc/freecontact/copyright drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/freecontact/examples/ -rw-r--r-- root/root 1374 2016-11-01 16:20 ./usr/share/doc/freecontact/examples/PF00071_v25_999.evfold.50 -rw-r--r-- root/root 2130 2016-11-01 16:20 ./usr/share/doc/freecontact/examples/PF00071_v25_999.evfold.50.xml.gz -rw-r--r-- root/root 166738 2016-11-01 16:20 ./usr/share/doc/freecontact/examples/PF00071_v25_999.fa -rw-r--r-- root/root 160326 2016-11-01 16:20 ./usr/share/doc/freecontact/examples/PF00071_v25_999.xml -rw-r--r-- root/root 127000 2016-11-01 16:20 ./usr/share/doc/freecontact/examples/demo_1000.aln -rw-r--r-- root/root 956 2016-11-01 16:20 ./usr/share/doc/freecontact/examples/demo_1000.psicov.50 drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/freecontact/ -rw-r--r-- root/root 95654 2016-11-01 16:20 ./usr/share/freecontact/BioXSD-1.1.xsd -rwxr-xr-x root/root 4769 2016-11-01 16:20 ./usr/share/freecontact/a2m2aln -rw-r--r-- root/root 2166 2016-11-01 16:20 ./usr/share/freecontact/freecontact_input.xsd -rw-r--r-- root/root 1679 2016-11-01 16:20 ./usr/share/freecontact/freecontact_output.xsd drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/man/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/man/man1/ -rw-r--r-- root/root 4822 2016-11-01 16:20 ./usr/share/man/man1/freecontact.1.gz libfreecontact-dev_1.0.21-4build3_i386.deb ------------------------------------------ new debian package, version 2.0. size 63038 bytes: control archive=1089 bytes. 1534 bytes, 35 lines control 211 bytes, 3 lines md5sums Package: libfreecontact-dev Source: freecontact Version: 1.0.21-4build3 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 259 Depends: libfreecontact0v5 (= 1.0.21-4build3) Suggests: libfreecontact-doc Conflicts: libfreecontact-dev Provides: libfreecontact-dev Section: libdevel Priority: optional Homepage: http://rostlab.org/ Description: fast protein contact predictor library - development files FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package contains files necessary for developing applications with libfreecontact. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2016-11-01 16:20 ./ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/include/ -rw-r--r-- root/root 12665 2016-11-01 16:20 ./usr/include/freecontact.h drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 236842 2016-11-01 16:20 ./usr/lib/i386-linux-gnu/libfreecontact.a lrwxrwxrwx root/root 0 2016-11-01 16:20 ./usr/lib/i386-linux-gnu/libfreecontact.so -> libfreecontact.so.0.0.0 drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/libfreecontact-dev/ lrwxrwxrwx root/root 0 2016-11-01 16:20 ./usr/share/doc/libfreecontact-dev/changelog.Debian.gz -> ../libfreecontact0v5/changelog.Debian.gz -rw-r--r-- root/root 1341 2015-08-19 20:34 ./usr/share/doc/libfreecontact-dev/copyright libfreecontact0-dbg_1.0.21-4build3_i386.deb ------------------------------------------- new debian package, version 2.0. size 3153792 bytes: control archive=1115 bytes. 1470 bytes, 33 lines control 290 bytes, 3 lines md5sums Package: libfreecontact0-dbg Source: freecontact Version: 1.0.21-4build3 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 3654 Depends: libfreecontact0v5 (= 1.0.21-4build3) Section: debug Priority: extra Multi-Arch: same Homepage: http://rostlab.org/ Description: debugging symbols for libfreecontact FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package provides the detached debug symbols for libfreecontact. Build-Ids: cc3ca487bf9ff1f92f39deb616251e1c8c705258 Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2016-11-01 16:20 ./ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/debug/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/debug/.build-id/46/ -rw-r--r-- root/root 377284 2016-11-01 16:20 ./usr/lib/debug/.build-id/46/60f17dae03333fd86c3f5218f4b6f6dc605503.debug drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/debug/.build-id/cc/ -rw-r--r-- root/root 3347704 2016-11-01 16:20 ./usr/lib/debug/.build-id/cc/3ca487bf9ff1f92f39deb616251e1c8c705258.debug drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/libfreecontact0-dbg/ lrwxrwxrwx root/root 0 2016-11-01 16:20 ./usr/share/doc/libfreecontact0-dbg/changelog.Debian.gz -> ../libfreecontact0v5/changelog.Debian.gz -rw-r--r-- root/root 1341 2015-08-19 20:34 ./usr/share/doc/libfreecontact0-dbg/copyright libfreecontact0v5_1.0.21-4build3_i386.deb ----------------------------------------- new debian package, version 2.0. size 59048 bytes: control archive=1227 bytes. 1586 bytes, 34 lines control 243 bytes, 3 lines md5sums 35 bytes, 1 lines shlibs 60 bytes, 2 lines triggers Package: libfreecontact0v5 Source: freecontact Version: 1.0.21-4build3 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 153 Depends: libblas3 | libblas.so.3, libc6 (>= 2.15), libgcc1 (>= 1:3.0), libgfortran3 (>= 4.6), libgomp1 (>= 4.9), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2) Conflicts: libfreecontact0 Replaces: libfreecontact0 Section: libs Priority: optional Multi-Arch: same Homepage: http://rostlab.org/ Description: fast protein contact predictor library FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package contains the shared library implementing freecontact. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2016-11-01 16:20 ./ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2016-11-01 16:20 ./usr/lib/i386-linux-gnu/libfreecontact.so.0 -> libfreecontact.so.0.0.0 -rw-r--r-- root/root 141112 2016-11-01 16:20 ./usr/lib/i386-linux-gnu/libfreecontact.so.0.0.0 drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-11-01 16:20 ./usr/share/doc/libfreecontact0v5/ -rw-r--r-- root/root 1074 2016-11-01 16:20 ./usr/share/doc/libfreecontact0v5/changelog.Debian.gz -rw-r--r-- root/root 1341 2015-08-19 20:34 ./usr/share/doc/libfreecontact0v5/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 72664 Build-Time: 288 Distribution: zesty-proposed Host Architecture: i386 Install-Time: 57 Job: freecontact_1.0.21-4build3.dsc Machine Architecture: amd64 Package: freecontact Package-Time: 348 Source-Version: 1.0.21-4build3 Space: 72664 Status: successful Version: 1.0.21-4build3 -------------------------------------------------------------------------------- Finished at 20161101-1733 Build needed 00:05:48, 72664k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11110960'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11110960/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11110960'] Unmounting chroot for build PACKAGEBUILD-11110960... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11110960'] Removing build PACKAGEBUILD-11110960