RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-29-server #1 SMP Tue Oct 11 15:33:51 UTC 2011 i686 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 1 May 01:59:09 ntpdate[25942]: adjust time server 10.211.37.1 offset 0.000565 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '5bf67c1c8984e73ffdae199ff2f864b604daa3a9', '/home/buildd/filecache-default/f010eb6e290ac0cbe310e969eafd7aa9163e57db'] Unpacking chroot for build 5bf67c1c8984e73ffdae199ff2f864b604daa3a9 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '5bf67c1c8984e73ffdae199ff2f864b604daa3a9'] Mounting chroot for build 5bf67c1c8984e73ffdae199ff2f864b604daa3a9 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '5bf67c1c8984e73ffdae199ff2f864b604daa3a9', 'deb http://ftpmaster.internal/ubuntu quantal main universe'] Overriding sources.list in build-5bf67c1c8984e73ffdae199ff2f864b604daa3a9 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '5bf67c1c8984e73ffdae199ff2f864b604daa3a9', 'i386'] Updating debian chroot for build 5bf67c1c8984e73ffdae199ff2f864b604daa3a9 Ign http://ftpmaster.internal quantal InRelease Get:1 http://ftpmaster.internal quantal Release.gpg [198 B] Get:2 http://ftpmaster.internal quantal Release [49.6 kB] Get:3 http://ftpmaster.internal quantal/main i386 Packages [1307 kB] Get:4 http://ftpmaster.internal quantal/universe i386 Packages [4815 kB] Get:5 http://ftpmaster.internal quantal/main TranslationIndex [74 B] Get:6 http://ftpmaster.internal quantal/universe TranslationIndex [75 B] Get:7 http://ftpmaster.internal quantal/main Translation-en [728 kB] Get:8 http://ftpmaster.internal quantal/universe Translation-en [3346 kB] Fetched 10.2 MB in 8s (1277 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: ca-certificates grep libdb5.1 libidn11 libkeyutils1 libncurses5 libncursesw5 libpciaccess0 libpcre3 librtmp0 libsasl2-2 libsqlite3-0 libtinfo5 ncurses-base ncurses-bin python-minimal 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2507 kB of archives. After this operation, 53.2 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! grep ncurses-bin ncurses-base python-minimal libdb5.1 libncursesw5 libtinfo5 libncurses5 libsqlite3-0 libpciaccess0 libpcre3 libidn11 libkeyutils1 librtmp0 libsasl2-2 ca-certificates Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ quantal/main grep i386 2.11-3 [250 kB] Get:2 http://ftpmaster.internal/ubuntu/ quantal/main ncurses-bin i386 5.9-6 [150 kB] Get:3 http://ftpmaster.internal/ubuntu/ quantal/main ncurses-base all 5.9-6 [21.8 kB] Get:4 http://ftpmaster.internal/ubuntu/ quantal/main python-minimal i386 2.7.3-0ubuntu3 [29.5 kB] Get:5 http://ftpmaster.internal/ubuntu/ quantal/main libdb5.1 i386 5.1.29-1 [737 kB] Get:6 http://ftpmaster.internal/ubuntu/ quantal/main libncursesw5 i386 5.9-6 [145 kB] Get:7 http://ftpmaster.internal/ubuntu/ quantal/main libtinfo5 i386 5.9-6 [90.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ quantal/main libncurses5 i386 5.9-6 [116 kB] Get:9 http://ftpmaster.internal/ubuntu/ quantal/main libsqlite3-0 i386 3.7.11-2 [363 kB] Get:10 http://ftpmaster.internal/ubuntu/ quantal/main libpciaccess0 i386 0.13.1-2 [22.0 kB] Get:11 http://ftpmaster.internal/ubuntu/ quantal/main libpcre3 i386 1:8.30-4 [156 kB] Get:12 http://ftpmaster.internal/ubuntu/ quantal/main libidn11 i386 1.24-2 [121 kB] Get:13 http://ftpmaster.internal/ubuntu/ quantal/main libkeyutils1 i386 1.5.5-2 [8054 B] Get:14 http://ftpmaster.internal/ubuntu/ quantal/main librtmp0 i386 2.4+20111222.git4e06e21-1 [58.3 kB] Get:15 http://ftpmaster.internal/ubuntu/ quantal/main libsasl2-2 i386 2.1.25.dfsg1-4 [68.4 kB] Get:16 http://ftpmaster.internal/ubuntu/ quantal/main ca-certificates all 20120212 [170 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2507 kB in 0s (13.8 MB/s) (Reading database ... 12281 files and directories currently installed.) Preparing to replace grep 2.10-1 (using .../archives/grep_2.11-3_i386.deb) ... Unpacking replacement grep ... Setting up grep (2.11-3) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace ncurses-bin 5.9-4 (using .../ncurses-bin_5.9-6_i386.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.9-6) ... (Reading database ... 12281 files and directories currently installed.) Preparing to replace ncurses-base 5.9-4 (using .../ncurses-base_5.9-6_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.9-6) ... (Reading database ... 12283 files and directories currently installed.) Preparing to replace python-minimal 2.7.3-0ubuntu2 (using .../python-minimal_2.7.3-0ubuntu3_i386.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.7.3-0ubuntu3) ... (Reading database ... 12283 files and directories currently installed.) Preparing to replace libdb5.1 5.1.25-11build1 (using .../libdb5.1_5.1.29-1_i386.deb) ... Unpacking replacement libdb5.1 ... Setting up libdb5.1 (5.1.29-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12283 files and directories currently installed.) Preparing to replace libncursesw5 5.9-4 (using .../libncursesw5_5.9-6_i386.deb) ... Unpacking replacement libncursesw5 ... Preparing to replace libtinfo5 5.9-4 (using .../libtinfo5_5.9-6_i386.deb) ... Unpacking replacement libtinfo5 ... Setting up libtinfo5 (5.9-6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12283 files and directories currently installed.) Preparing to replace libncurses5 5.9-4 (using .../libncurses5_5.9-6_i386.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.9-6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12283 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.9-2ubuntu1 (using .../libsqlite3-0_3.7.11-2_i386.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libpciaccess0 0.12.902-1 (using .../libpciaccess0_0.13.1-2_i386.deb) ... Unpacking replacement libpciaccess0 ... Preparing to replace libpcre3 8.12-4 (using .../libpcre3_1%3a8.30-4_i386.deb) ... Unpacking replacement libpcre3 ... Preparing to replace libidn11 1.23-2 (using .../libidn11_1.24-2_i386.deb) ... Unpacking replacement libidn11 ... Preparing to replace libkeyutils1 1.5.2-2 (using .../libkeyutils1_1.5.5-2_i386.deb) ... Unpacking replacement libkeyutils1 ... Preparing to replace librtmp0 2.4~20110711.gitc28f1bab-1 (using .../librtmp0_2.4+20111222.git4e06e21-1_i386.deb) ... Unpacking replacement librtmp0 ... Preparing to replace libsasl2-2 2.1.25.dfsg1-3 (using .../libsasl2-2_2.1.25.dfsg1-4_i386.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace ca-certificates 20111211 (using .../ca-certificates_20120212_all.deb) ... Unpacking replacement ca-certificates ... Setting up libncursesw5 (5.9-6) ... Setting up libsqlite3-0 (3.7.11-2) ... Setting up libpciaccess0 (0.13.1-2) ... Setting up libpcre3 (1:8.30-4) ... Setting up libidn11 (1.24-2) ... Setting up libkeyutils1 (1.5.5-2) ... Setting up librtmp0 (2.4+20111222.git4e06e21-1) ... Setting up libsasl2-2 (2.1.25.dfsg1-4) ... Setting up ca-certificates (20120212) ... Updating certificates in /etc/ssl/certs... 3 added, 4 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '5bf67c1c8984e73ffdae199ff2f864b604daa3a9', 'i386', 'quantal', '--nolog', '--batch', '--archive=ubuntu', '--dist=quantal', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'garlic_1.6-1.1.dsc'] Initiating build 5bf67c1c8984e73ffdae199ff2f864b604daa3a9 with 2 jobs across 2 processor cores. Automatic build of garlic_1.6-1.1 on zirconium by sbuild/i386 1.170.5 Build started at 20120501-0159 ****************************************************************************** garlic_1.6-1.1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>> 5), cdbs, libx11-dev Checking for already installed source dependencies... debhelper: missing cdbs: missing libx11-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs libx11-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils dh-apparmor dh-translations file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpthread-stubs0 libpthread-stubs0-dev libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml-parser-perl libxml2 m4 man-db mime-support netbase po-debconf python python-scour python2.7 x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl libxcb-doc less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc Recommended packages: curl wget lynx-cur libio-socket-inet6-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-apparmor dh-translations file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpthread-stubs0 libpthread-stubs0-dev libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml-parser-perl libxml2 m4 man-db mime-support netbase po-debconf python python-scour python2.7 x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev 0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 14.4 MB of archives. After this operation, 47.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libmagic1 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxml2 libcroco3 libunistring0 libgettextpo0 file mime-support netbase python2.7 python bsdmainutils gettext-base groff-base man-db m4 autoconf autotools-dev automake html2text gettext intltool-debian po-debconf dh-apparmor debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libnet-http-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations python-scour cdbs libpthread-stubs0 libpthread-stubs0-dev xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libxcb1-dev libx11-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ quantal/main libexpat1 i386 2.0.1-7.2ubuntu1 [130 kB] Get:2 http://ftpmaster.internal/ubuntu/ quantal/main libmagic1 i386 5.11-1 [219 kB] Get:3 http://ftpmaster.internal/ubuntu/ quantal/main libpipeline1 i386 1.2.1-1 [26.1 kB] Get:4 http://ftpmaster.internal/ubuntu/ quantal/main libxau6 i386 1:1.0.7-1 [8582 B] Get:5 http://ftpmaster.internal/ubuntu/ quantal/main libxdmcp6 i386 1:1.1.1-1 [13.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ quantal/main libxcb1 i386 1.8.1-1 [48.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ quantal/main libx11-data all 2:1.4.99.1-0ubuntu2 [168 kB] Get:8 http://ftpmaster.internal/ubuntu/ quantal/main libx11-6 i386 2:1.4.99.1-0ubuntu2 [770 kB] Get:9 http://ftpmaster.internal/ubuntu/ quantal/main libxml2 i386 2.7.8.dfsg-5.1ubuntu4 [662 kB] Get:10 http://ftpmaster.internal/ubuntu/ quantal/main libcroco3 i386 0.6.5-1 [99.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ quantal/main libunistring0 i386 0.9.3-5 [432 kB] Get:12 http://ftpmaster.internal/ubuntu/ quantal/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB] Get:13 http://ftpmaster.internal/ubuntu/ quantal/main file i386 5.11-1 [19.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ quantal/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ quantal/main netbase all 4.47ubuntu1 [15.0 kB] Get:16 http://ftpmaster.internal/ubuntu/ quantal/main python2.7 i386 2.7.3-0ubuntu3 [2635 kB] Get:17 http://ftpmaster.internal/ubuntu/ quantal/main python i386 2.7.3-0ubuntu3 [166 kB] Get:18 http://ftpmaster.internal/ubuntu/ quantal/main bsdmainutils i386 8.2.3ubuntu1 [194 kB] Get:19 http://ftpmaster.internal/ubuntu/ quantal/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB] Get:20 http://ftpmaster.internal/ubuntu/ quantal/main groff-base i386 1.21-7 [1024 kB] Get:21 http://ftpmaster.internal/ubuntu/ quantal/main man-db i386 2.6.1-2 [747 kB] Get:22 http://ftpmaster.internal/ubuntu/ quantal/main m4 i386 1.4.16-2ubuntu1 [195 kB] Get:23 http://ftpmaster.internal/ubuntu/ quantal/main autoconf all 2.68-1ubuntu2 [560 kB] Get:24 http://ftpmaster.internal/ubuntu/ quantal/main autotools-dev all 20120210.1ubuntu1 [42.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ quantal/main automake all 1:1.11.5-1 [575 kB] Get:26 http://ftpmaster.internal/ubuntu/ quantal/main html2text i386 1.3.2a-15 [101 kB] Get:27 http://ftpmaster.internal/ubuntu/ quantal/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB] Get:28 http://ftpmaster.internal/ubuntu/ quantal/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ quantal/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:30 http://ftpmaster.internal/ubuntu/ quantal/main dh-apparmor all 2.7.102-0ubuntu3 [9622 B] Get:31 http://ftpmaster.internal/ubuntu/ quantal/main debhelper all 9.20120419ubuntu2 [609 kB] Get:32 http://ftpmaster.internal/ubuntu/ quantal/main liburi-perl all 1.60-1 [89.6 kB] Get:33 http://ftpmaster.internal/ubuntu/ quantal/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:34 http://ftpmaster.internal/ubuntu/ quantal/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:35 http://ftpmaster.internal/ubuntu/ quantal/main libfile-listing-perl all 6.04-1 [9774 B] Get:36 http://ftpmaster.internal/ubuntu/ quantal/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:37 http://ftpmaster.internal/ubuntu/ quantal/main libhtml-parser-perl i386 3.69-2 [99.4 kB] Get:38 http://ftpmaster.internal/ubuntu/ quantal/main libhtml-tree-perl all 4.2-1 [205 kB] Get:39 http://ftpmaster.internal/ubuntu/ quantal/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:40 http://ftpmaster.internal/ubuntu/ quantal/main libhttp-message-perl all 6.03-1 [77.6 kB] Get:41 http://ftpmaster.internal/ubuntu/ quantal/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:42 http://ftpmaster.internal/ubuntu/ quantal/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ quantal/main libnet-ssleay-perl i386 1.47-1 [314 kB] Get:44 http://ftpmaster.internal/ubuntu/ quantal/main libio-socket-ssl-perl all 1.66-1 [50.1 kB] Get:45 http://ftpmaster.internal/ubuntu/ quantal/main libnet-http-perl all 6.03-1 [23.8 kB] Get:46 http://ftpmaster.internal/ubuntu/ quantal/main liblwp-protocol-https-perl all 6.03-1 [7178 B] Get:47 http://ftpmaster.internal/ubuntu/ quantal/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:48 http://ftpmaster.internal/ubuntu/ quantal/main libwww-perl all 6.04-1 [156 kB] Get:49 http://ftpmaster.internal/ubuntu/ quantal/main libxml-parser-perl i386 2.41-1build1 [264 kB] Get:50 http://ftpmaster.internal/ubuntu/ quantal/main intltool all 0.50.2-2 [52.0 kB] Get:51 http://ftpmaster.internal/ubuntu/ quantal/main dh-translations all 116 [21.6 kB] Get:52 http://ftpmaster.internal/ubuntu/ quantal/main python-scour all 0.26-3 [46.5 kB] Get:53 http://ftpmaster.internal/ubuntu/ quantal/main cdbs all 0.4.111ubuntu1 [48.3 kB] Get:54 http://ftpmaster.internal/ubuntu/ quantal/main libpthread-stubs0 i386 0.3-3 [3264 B] Get:55 http://ftpmaster.internal/ubuntu/ quantal/main libpthread-stubs0-dev i386 0.3-3 [2860 B] Get:56 http://ftpmaster.internal/ubuntu/ quantal/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:57 http://ftpmaster.internal/ubuntu/ quantal/main x11proto-core-dev all 7.0.22-1 [299 kB] Get:58 http://ftpmaster.internal/ubuntu/ quantal/main libxau-dev i386 1:1.0.7-1 [10.0 kB] Get:59 http://ftpmaster.internal/ubuntu/ quantal/main libxdmcp-dev i386 1:1.1.1-1 [26.8 kB] Get:60 http://ftpmaster.internal/ubuntu/ quantal/main x11proto-input-dev all 2.2-1 [133 kB] Get:61 http://ftpmaster.internal/ubuntu/ quantal/main x11proto-kb-dev all 1.0.6-1 [273 kB] Get:62 http://ftpmaster.internal/ubuntu/ quantal/main xtrans-dev all 1.2.6-2 [82.9 kB] Get:63 http://ftpmaster.internal/ubuntu/ quantal/main libxcb1-dev i386 1.8.1-1 [82.4 kB] Get:64 http://ftpmaster.internal/ubuntu/ quantal/main libx11-dev i386 2:1.4.99.1-0ubuntu2 [894 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.4 MB in 1s (14.0 MB/s) Selecting previously unselected package libexpat1. (Reading database ... 12282 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2ubuntu1_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.11-1_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_i386.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.7-1_i386.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.1-1_i386.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.8.1-1_i386.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.1-0ubuntu2_all.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.99.1-0ubuntu2_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_i386.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_i386.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.51-1ubuntu1_all.deb) ... Selecting previously unselected package netbase. Unpacking netbase (from .../netbase_4.47ubuntu1_all.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.3-0ubuntu3_i386.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.3-0ubuntu3_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../m4_1.4.16-2ubuntu1_i386.deb) ... Selecting previously unselected package autoconf. Unpacking autoconf (from .../autoconf_2.68-1ubuntu2_all.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1ubuntu1_all.deb) ... Selecting previously unselected package automake. Unpacking automake (from .../automake_1%3a1.11.5-1_all.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419ubuntu2_all.deb) ... Selecting previously unselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.60-1_all.deb) ... Selecting previously unselected package libencode-locale-perl. 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Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up netbase (4.47ubuntu1) ... Setting up python2.7 (2.7.3-0ubuntu3) ... Setting up python (2.7.3-0ubuntu3) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up m4 (1.4.16-2ubuntu1) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20120210.1ubuntu1) ... Setting up automake (1:1.11.5-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3) ... Setting up debhelper (9.20120419ubuntu2) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-2) ... Setting up libhtml-tree-perl (4.2-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.03-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.47-1) ... Setting up libio-socket-ssl-perl (1.66-1) ... Setting up libnet-http-perl (6.03-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-3) ... Setting up libpthread-stubs0 (0.3-3) ... Setting up libpthread-stubs0-dev (0.3-3) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.7-1) ... Setting up libxdmcp-dev (1:1.1.1-1) ... Setting up x11proto-input-dev (2.2-1) ... Setting up x11proto-kb-dev (1.0.6-1) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libxcb1-dev (1.8.1-1) ... Setting up libx11-dev (2:1.4.99.1-0ubuntu2) ... Setting up liblwp-protocol-https-perl (6.03-1) ... Setting up libwww-perl (6.04-1) ... Setting up libxml-parser-perl (2.41-1build1) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (116) ... Setting up cdbs (0.4.111ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu8 gcc-4.7_4.7.0-5ubuntu1 g++-4.7_4.7.0-5ubuntu1 binutils_2.22-6ubuntu1 libstdc++6-4.7-dev_4.7.0-5ubuntu1 libstdc++6_4.7.0-5ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Sun Apr 15 12:17:23 2012 UTC using RSA key ID 8649AA06 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./garlic_1.6-1.1.dsc dpkg-source: info: extracting garlic in garlic-1.6 dpkg-source: info: unpacking garlic_1.6.orig.tar.gz dpkg-source: info: applying garlic_1.6-1.1.diff.gz dpkg-buildpackage: source package garlic dpkg-buildpackage: source version 1.6-1.1 dpkg-source --before-build garlic-1.6 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean rm -f *.o garlic rm -f garlicrc debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make CCOPT="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" make[1]: Entering directory `/build/buildd/garlic-1.6' gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall garlic.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall print_usage.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall print_help.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall print_version.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall register.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall alloc_gui.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall alloc_config.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall alloc_mol_complex.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall free_memory.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall display_init.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall disp_color_cap.c disp_color_cap.c: In function 'DisplayColorCapabilities_': disp_color_cap.c:50:6: warning: variable 'n' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall color_shifts.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall calc_params.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall errmsg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall warnmsg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall openfile_r.c openfile_r.c: In function 'OpenFileForReading_': openfile_r.c:123:13: warning: array subscript is below array bounds [-Warray-bounds] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall read_config.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall open_config_file.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_int.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ex2ints.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_double.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ex2doubles.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_phrase.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_index.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ex_rot_steps.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ex_trans_steps.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ex_slab_steps.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ex_fading_steps.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_args.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall parse_options.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall parse_color.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall load_font.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall prepare_cursor.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall print_config.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall create_windows.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall make_pixmap.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall make_pixmap2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rgbs_from_xcolor.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall pixel_from_rgbs.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall size_hints.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall wmhints.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_events.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hide_control.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall load_complex.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall read_file.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall fileformat.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall is_pdb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall read_pdb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_header.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall pdb_atom.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_field.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall copypur.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall realloc_pdb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall headerline.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall geomcenter.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall flip_vector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall translate_complex.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extent.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall stereo_data.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall strong_bonds.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall pseudo_bonds.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall check_dist.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall add_bond.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall event_loop.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall alloc_nearest.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_nearest.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall main_refresh.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall key_press.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rotation_angle.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rotate.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall translation_shift.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall translate.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall slab_shift.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall move_back_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall move_front_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall fading_shift.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall move_back_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall move_front_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall key_release.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall refresh_pixmap.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall no_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall planar_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall sphere_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall half_sphere_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall cylin_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall half_cylin_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall project_atoms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall prepare_color.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall no_fading.c no_fading.c: In function 'NoFading_': no_fading.c:50:10: warning: variable 'colorS' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall planar_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall sphere_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall half_sphere_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall cylin_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall half_cylin_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall reset_pos_flag.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atoms_style1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atoms_style2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atoms_style3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atoms_style4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atoms_style5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atoms_style6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atoms_style7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bonds_style1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style1_quad1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style1_quad2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style1_quad3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style1_quad4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bonds_style2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style2_quad1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style2_quad2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style2_quad3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style2_quad4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bonds_style3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall interpolate_color.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style3_quad1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style3_quad2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style3_quad3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style3_quad4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bonds_style4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall add_two_colors.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style4_quad1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style4_quad2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style4_quad3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style4_quad4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bonds_style5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall add_three_colors.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style5_quad1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style5_quad2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style5_quad3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_style5_quad4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_system.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall motion_notify.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall assign_hyphob.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall control_refresh.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall print_cursor_names.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall main_resize.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_runtime.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall add_char.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall input_refresh.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall eat_left_char.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall eat_right_char.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall execute_command1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall execute_command2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall truncate_comm.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall create_log_file.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall load.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall catch.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall discard.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall full_select.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall include.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chains.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall residue_ranges.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_token.c extract_token.c: In function 'ExtractToken_': extract_token.c:40:24: warning: variable 'token_foundF' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_serials.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall residue_names.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atom_names.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall exclude.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall skip_keyword.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall apply_selection.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall show.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hide.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall color_schemes.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_colors.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall color.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall special_select.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_hetero.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_element.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_atoms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall quick_select.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall replace_command.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall atoms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bonds.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall execute_script.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall comm_rotate.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall comm_translate.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall comm_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall comm_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall log.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall prepare_backbone.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall background.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall text_background.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall text_foreground.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall change_slab.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall change_fading.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall full_colors.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall is_old.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall font.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall cpk.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall zebra.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chain.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall color_hyphob.c color_hyphob.c: In function 'ColorHyphob_': color_hyphob.c:49:10: warning: variable 'rgb_struct_size' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall mix_colors.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall comm_backbone.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hide_no_refresh.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall show_no_refresh.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall backbone.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hybonds.c hybonds.c: In function 'HydrogenBonds_': hybonds.c:72:7: warning: variable 'l' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall generate_hybonds.c generate_hybonds.c: In function 'GenerateHyBonds_': generate_hybonds.c:100:9: warning: variable 'min_dist' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hybond_style.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall show_backbone.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hide_backbone.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall pdb_id.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall generate_plane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall stereo.c stereo.c: In function 'CommandStereo_': stereo.c:90:1: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false [-Wstrict-overflow] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall mono.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall position.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall copy_doubles.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall title.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall free_runtime.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_titles.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall foreground.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall prepare_oc.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_complement.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall labels.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_labels.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall assign_radii.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall spacefill.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall spacefill_color.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_balls.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall center.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall save.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall write_line.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall big_spheres.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall tag.c tag.c: In function 'Tag_': tag.c:86:8: warning: variable 'dummyP' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_tags.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall tag_position.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall button_press.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall control_click.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall identify_button.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_buttons.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall write_hints.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_sequence.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall count_residues.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall sequence.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall parse_sequence.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall sequence_from.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall load_sequence.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_sequence.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall compare_sequences.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall dihedral_angles.c dihedral_angles.c: In function 'DihedralAngles_': dihedral_angles.c:159:10: warning: variable 'vector_struct_size' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_ncaco.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall phi_from_cncac.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall psi_from_ncaco.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall vector_product.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall absolute_value.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall scalar_product.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall omega_from_cacnca.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_cis_trans.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ramachandran.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_ramachandran.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rama_frame.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rama_mouse.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall read_fasta.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall save_sequence.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall wheel.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall wheel_top_view.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall wheel_bottom_view.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hydrophobicity.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall weight_colors.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall angle.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall radius.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_sphere.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall disulfide_bonds.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall venn.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_venn.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall spacefill2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall sp2_color.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall save_seq_w_numbers.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ssb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_alternate.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_model.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall color_model.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall window.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall plot.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_plots.c draw_plots.c: In function 'DrawPlots_': draw_plots.c:126:19: warning: variable 'text_ascent' set but not used [-Wunused-but-set-variable] draw_plots.c:126:6: warning: variable 'text_height' set but not used [-Wunused-but-set-variable] draw_plots.c:125:6: warning: variable 'string_length' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall weighted_hydrophobicity.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall average_hydrophobicity.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_hyphob.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall plot_mouse.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall project_planes.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_planes.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall plane_extent.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rotate_plane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall translate_plane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall comm_move.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall plane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_above.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_below.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall big2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall scale.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall pattern.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall dock.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall align_normal.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall align_complexes.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall docking_window.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall docking_resize.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall docking_refresh.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall docking_project.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall list_exposed_polar.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall is_polar.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall representative_atoms.c representative_atoms.c: In function 'RepresentativeAtoms_': representative_atoms.c:58:8: warning: variable 'exposed_atomIP' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall exclude_distant.c exclude_distant.c: In function 'ExcludeDistant_': exclude_distant.c:46:8: warning: variable 'exposed_atomIP' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_bottom.c draw_bottom.c: In function 'DrawBottom_': draw_bottom.c:46:7: warning: variable 'geom_returnF' set but not used [-Wunused-but-set-variable] draw_bottom.c:44:8: warning: variable 'exposed_atomIP' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_top.c draw_top.c: In function 'DrawTop_': draw_top.c:52:23: warning: variable 'screen_delta_y' set but not used [-Wunused-but-set-variable] draw_top.c:52:7: warning: variable 'screen_delta_x' set but not used [-Wunused-but-set-variable] draw_top.c:45:7: warning: variable 'geom_returnF' set but not used [-Wunused-but-set-variable] draw_top.c:43:8: warning: variable 'exposed_atomIP' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall copy_sequence.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall compare.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_comparison.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall neighborhood.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_balls2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall comparison_mouse.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall structure.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall parse_sec_structure.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall copy_sec_structure.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall load_sec_structure.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall save_sec_structure.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall alloc_sec_structure.c alloc_sec_structure.c: In function 'AllocSecondaryStructure_': alloc_sec_structure.c:51:16: warning: variable 'char_size' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall sec_structure_from.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall create.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall open_template_file.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall read_template_file.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall ex_template_residues.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall count_template_res.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall create_structure.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall required_atoms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall copy_template_atoms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall fix_chain.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall reset_phi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_hncac.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall phi_from_hncac.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rotate_atom.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall parallel_part.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall reset_psi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall build_chain.c build_chain.c: In function 'BuildChain_': build_chain.c:59:38: warning: variable 'cac2' set but not used [-Wunused-but-set-variable] build_chain.c:59:32: warning: variable 'cac1' set but not used [-Wunused-but-set-variable] build_chain.c:57:10: warning: variable 'vector_struct_size' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_ncac.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall translate_range.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rotate_range.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall apply_structure.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall generate_phi_psi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_nca.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_c.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall replace.c replace.c: In function 'Replace_': replace.c:105:10: warning: variable 'char_size' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_n.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall refresh_backbone.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall edit.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_edit_symbol.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_squid.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_seahorse.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall are_atoms_bound.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall bond_partners.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall edit_phi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall edit_psi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_cac.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall small_ramachandran.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall edit_omega.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall small_omega.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_h.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_o.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall psi_from_ncacn.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall is_standard.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_four_atoms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi1_from_ncacbcg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi1_from_ncacbsg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi1_from_ncacbcg1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi1_from_ncacbog.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi1_from_ncacbog1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi2_from_cacbcgcd.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi2_from_cacbcgod1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi2_from_cacbcgnd1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi2_from_cacbcg1cd.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi2_from_cacbcgcd1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi2_from_cacbcgsd.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi3_from_cbcgcdne.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi3_from_cbcgcdoe1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi3_from_cbcgcdce.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi3_from_cbcgsdce.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi4_from_cgcdnecz.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi4_from_cgcdcenz.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall chi5_from_cdnecznh1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall is_part_of_ring.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall edit_bond.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall edit_chi2.c edit_chi2.c: In function 'EditChi2_': edit_chi2.c:57:10: warning: variable 'atomsN' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_cacb.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall edit_chi1.c edit_chi1.c: In function 'EditChi1_': edit_chi1.c:53:10: warning: variable 'atomsN' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_cbxg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall resize_complex.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall membrane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall inform_user.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall alpha_membrane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_ca.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_vector.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall alpha_membrane_center.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall init_membrane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall alpha_normal.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall project_membranes.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_membranes.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall rotate_membrane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall translate_membrane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_triplet.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set_phi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set_psi.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set_omega.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set_chi1.c set_chi1.c: In function 'SetChi1_': set_chi1.c:58:10: warning: variable 'atomsN' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set_chi2.c set_chi2.c: In function 'SetChi2_': set_chi2.c:59:10: warning: variable 'atomsN' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set_chi3.c set_chi3.c: In function 'SetChi3_': set_chi3.c:58:10: warning: variable 'atomsN' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_cgxd.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set_chi4.c set_chi4.c: In function 'SetChi4_': set_chi4.c:56:10: warning: variable 'atomsN' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_cdxe.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall set_chi5.c set_chi5.c: In function 'SetChi5_': set_chi5.c:55:10: warning: variable 'atomsN' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_necz.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall pick_bond.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall nice_bonds.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall covalent.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall covalent2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall half_nice_bond.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall probe.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall small_atoms.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall small_atoms2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall draw_sticks.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall half_stick.c half_stick.c: In function 'HalfStick_': half_stick.c:90:27: warning: variable 'surface_y' set but not used [-Wunused-but-set-variable] half_stick.c:90:16: warning: variable 'surface_x' set but not used [-Wunused-but-set-variable] half_stick.c:79:34: warning: variable 'double_linear_increment' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall command_refresh.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall acceptor_dipole.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall donor_dipole.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall sticks.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall balls.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall blur.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall blur_main_window.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall group.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall beta_membrane.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall extract_cg.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_tm.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall parse_pattern.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_pattern.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hyphob_function1.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hyphob_function2.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hyphob_function3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hyphob_function4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hyphob_function5.c hyphob_function5.c: In function 'HyphobFunction5_': hyphob_function5.c:70:9: warning: unused variable 'average_value' [-Wunused-variable] hyphob_function5.c:69:9: warning: unused variable 'weightA' [-Wunused-variable] hyphob_function5.c:68:36: warning: unused variable 'right_value' [-Wunused-variable] hyphob_function5.c:68:21: warning: unused variable 'central_value' [-Wunused-variable] hyphob_function5.c:68:9: warning: unused variable 'left_value' [-Wunused-variable] hyphob_function5.c:67:15: warning: unused variable 'combinedI' [-Wunused-variable] hyphob_function5.c:67:6: warning: unused variable 'windowI' [-Wunused-variable] hyphob_function5.c:65:9: warning: unused variable 'f4' [-Wunused-variable] hyphob_function5.c:64:27: warning: unused variable 'f3before' [-Wunused-variable] hyphob_function5.c:63:27: warning: unused variable 'f2before' [-Wunused-variable] hyphob_function5.c:63:9: warning: unused variable 'f2' [-Wunused-variable] hyphob_function5.c:62:27: warning: unused variable 'f1before' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hyphob_function6.c hyphob_function6.c: In function 'HyphobFunction6_': hyphob_function6.c:65:9: warning: variable 'f4' set but not used [-Wunused-but-set-variable] hyphob_function6.c:64:9: warning: variable 'f3' set but not used [-Wunused-but-set-variable] hyphob_function6.c:62:27: warning: variable 'f1after' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall hyphob_function7.c hyphob_function7.c: In function 'HyphobFunction7_': hyphob_function7.c:67:9: warning: unused variable 'weightA' [-Wunused-variable] hyphob_function7.c:66:15: warning: unused variable 'combinedI' [-Wunused-variable] hyphob_function7.c:66:6: warning: unused variable 'windowI' [-Wunused-variable] hyphob_function7.c:65:9: warning: unused variable 'average_value' [-Wunused-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall color_size.c color_size.c: In function 'ColorSize_': color_size.c:50:9: warning: variable 'rgb_struct_size' set but not used [-Wunused-but-set-variable] gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall command_dump.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall is_aromatic.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_2c3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_2cz3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_2nz3.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3c4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3cz4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3nz4.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3c5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3cz5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3nz5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3p5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4c5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4cz5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4nz5.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3c6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3cz6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_3nz6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4c6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4cz6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4nz6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4p6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5c6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5cz6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5nz6.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4c7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4cz7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4nz7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5c7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5cz7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5nz7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5p7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_6p7.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4c9.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4cz9.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_4nz9.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5c9.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5cz9.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall select_5nz9.c gcc -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall color_weighted.c color_weighted.c: In function 'ColorWeighted_': color_weighted.c:85:17: warning: variable 'inverse_range' set but not used [-Wunused-but-set-variable] color_weighted.c:64:10: warning: variable 'rgb_struct_size' set but not used [-Wunused-but-set-variable] gcc -o garlic -L/usr/X11R6/lib garlic.o print_usage.o print_help.o print_version.o register.o alloc_gui.o alloc_config.o alloc_mol_complex.o free_memory.o display_init.o disp_color_cap.o color_shifts.o calc_params.o errmsg.o warnmsg.o openfile_r.o read_config.o open_config_file.o extract_int.o ex2ints.o extract_double.o ex2doubles.o extract_phrase.o extract_index.o ex_rot_steps.o ex_trans_steps.o ex_slab_steps.o ex_fading_steps.o extract_args.o parse_options.o parse_color.o load_font.o prepare_cursor.o print_config.o create_windows.o make_pixmap.o make_pixmap2.o rgbs_from_xcolor.o pixel_from_rgbs.o size_hints.o wmhints.o select_events.o hide_control.o load_complex.o read_file.o fileformat.o is_pdb.o read_pdb.o init_header.o pdb_atom.o extract_field.o copypur.o realloc_pdb.o headerline.o geomcenter.o init_slab.o init_fading.o flip_vector.o translate_complex.o extent.o stereo_data.o strong_bonds.o pseudo_bonds.o check_dist.o add_bond.o event_loop.o alloc_nearest.o init_nearest.o main_refresh.o key_press.o rotation_angle.o rotate.o translation_shift.o translate.o slab_shift.o move_back_slab.o move_front_slab.o fading_shift.o move_back_fading.o move_front_fading.o key_release.o refresh_pixmap.o slab.o no_slab.o planar_slab.o sphere_slab.o half_sphere_slab.o cylin_slab.o half_cylin_slab.o project_atoms.o fading.o prepare_color.o no_fading.o planar_fading.o sphere_fading.o half_sphere_fading.o cylin_fading.o half_cylin_fading.o reset_pos_flag.o atoms_style1.o atoms_style2.o atoms_style3.o atoms_style4.o atoms_style5.o atoms_style6.o atoms_style7.o bonds_style1.o bond_style1_quad1.o bond_style1_quad2.o bond_style1_quad3.o bond_style1_quad4.o bonds_style2.o bond_style2_quad1.o bond_style2_quad2.o bond_style2_quad3.o bond_style2_quad4.o bonds_style3.o interpolate_color.o bond_style3_quad1.o bond_style3_quad2.o bond_style3_quad3.o bond_style3_quad4.o bonds_style4.o add_two_colors.o bond_style4_quad1.o bond_style4_quad2.o bond_style4_quad3.o bond_style4_quad4.o bonds_style5.o add_three_colors.o bond_style5_quad1.o bond_style5_quad2.o bond_style5_quad3.o bond_style5_quad4.o draw_system.o motion_notify.o assign_hyphob.o control_refresh.o print_cursor_names.o main_resize.o init_runtime.o add_char.o input_refresh.o eat_left_char.o eat_right_char.o execute_command1.o execute_command2.o truncate_comm.o create_log_file.o load.o catch.o discard.o select.o full_select.o include.o chains.o residue_ranges.o extract_token.o extract_serials.o residue_names.o atom_names.o exclude.o skip_keyword.o apply_selection.o show.o hide.o color_schemes.o init_colors.o color.o special_select.o select_hetero.o select_element.o select_atoms.o quick_select.o replace_command.o atoms.o bonds.o execute_script.o comm_rotate.o comm_translate.o comm_slab.o comm_fading.o log.o prepare_backbone.o background.o text_background.o text_foreground.o change_slab.o change_fading.o full_colors.o is_old.o font.o cpk.o zebra.o chain.o color_hyphob.o mix_colors.o comm_backbone.o hide_no_refresh.o show_no_refresh.o backbone.o hybonds.o generate_hybonds.o hybond_style.o show_backbone.o hide_backbone.o pdb_id.o generate_plane.o stereo.o mono.o position.o copy_doubles.o title.o free_runtime.o draw_titles.o foreground.o prepare_oc.o select_complement.o labels.o draw_labels.o assign_radii.o spacefill.o spacefill_color.o draw_balls.o center.o save.o write_line.o big_spheres.o tag.o draw_tags.o tag_position.o button_press.o control_click.o identify_button.o init_buttons.o write_hints.o extract_sequence.o count_residues.o sequence.o parse_sequence.o sequence_from.o load_sequence.o select_sequence.o compare_sequences.o dihedral_angles.o extract_ncaco.o phi_from_cncac.o psi_from_ncaco.o vector_product.o absolute_value.o scalar_product.o omega_from_cacnca.o select_cis_trans.o ramachandran.o draw_ramachandran.o rama_frame.o rama_mouse.o read_fasta.o save_sequence.o wheel.o wheel_top_view.o wheel_bottom_view.o hydrophobicity.o weight_colors.o angle.o radius.o select_sphere.o disulfide_bonds.o venn.o draw_venn.o spacefill2.o sp2_color.o save_seq_w_numbers.o ssb.o select_alternate.o select_model.o color_model.o window.o plot.o draw_plots.o weighted_hydrophobicity.o average_hydrophobicity.o init_hyphob.o plot_mouse.o project_planes.o draw_planes.o plane_extent.o rotate_plane.o translate_plane.o comm_move.o plane.o select_above.o select_below.o big2.o scale.o pattern.o dock.o align_normal.o align_complexes.o docking_window.o docking_resize.o docking_refresh.o docking_project.o list_exposed_polar.o is_polar.o representative_atoms.o exclude_distant.o draw_bottom.o draw_top.o copy_sequence.o compare.o draw_comparison.o neighborhood.o draw_balls2.o comparison_mouse.o structure.o parse_sec_structure.o copy_sec_structure.o load_sec_structure.o save_sec_structure.o alloc_sec_structure.o sec_structure_from.o create.o open_template_file.o read_template_file.o ex_template_residues.o count_template_res.o create_structure.o required_atoms.o copy_template_atoms.o fix_chain.o reset_phi.o extract_hncac.o phi_from_hncac.o rotate_atom.o parallel_part.o reset_psi.o build_chain.o extract_ncac.o translate_range.o rotate_range.o apply_structure.o generate_phi_psi.o extract_nca.o extract_c.o replace.o extract_n.o refresh_backbone.o edit.o draw_edit_symbol.o draw_squid.o draw_seahorse.o are_atoms_bound.o bond_partners.o edit_phi.o edit_psi.o extract_cac.o small_ramachandran.o edit_omega.o small_omega.o extract_h.o extract_o.o psi_from_ncacn.o is_standard.o extract_four_atoms.o chi1_from_ncacbcg.o chi1_from_ncacbsg.o chi1_from_ncacbcg1.o chi1_from_ncacbog.o chi1_from_ncacbog1.o chi2_from_cacbcgcd.o chi2_from_cacbcgod1.o chi2_from_cacbcgnd1.o chi2_from_cacbcg1cd.o chi2_from_cacbcgcd1.o chi2_from_cacbcgsd.o chi3_from_cbcgcdne.o chi3_from_cbcgcdoe1.o chi3_from_cbcgcdce.o chi3_from_cbcgsdce.o chi4_from_cgcdnecz.o chi4_from_cgcdcenz.o chi5_from_cdnecznh1.o is_part_of_ring.o edit_bond.o edit_chi2.o extract_cacb.o edit_chi1.o extract_cbxg.o resize_complex.o membrane.o inform_user.o alpha_membrane.o extract_ca.o extract_vector.o alpha_membrane_center.o init_membrane.o alpha_normal.o project_membranes.o draw_membranes.o rotate_membrane.o translate_membrane.o select_triplet.o set.o set_phi.o set_psi.o set_omega.o set_chi1.o set_chi2.o set_chi3.o extract_cgxd.o set_chi4.o extract_cdxe.o set_chi5.o extract_necz.o pick_bond.o nice_bonds.o covalent.o covalent2.o half_nice_bond.o probe.o small_atoms.o small_atoms2.o draw_sticks.o half_stick.o command_refresh.o acceptor_dipole.o donor_dipole.o sticks.o balls.o blur.o blur_main_window.o group.o beta_membrane.o extract_cg.o select_tm.o parse_pattern.o select_pattern.o hyphob_function1.o hyphob_function2.o hyphob_function3.o hyphob_function4.o hyphob_function5.o hyphob_function6.o hyphob_function7.o color_size.o command_dump.o is_aromatic.o select_2c3.o select_2cz3.o select_2nz3.o select_3c4.o select_3cz4.o select_3nz4.o select_3c5.o select_3cz5.o select_3nz5.o select_3p5.o select_4c5.o select_4cz5.o select_4nz5.o select_3c6.o select_3cz6.o select_3nz6.o select_4c6.o select_4cz6.o select_4nz6.o select_4p6.o select_5c6.o select_5cz6.o select_5nz6.o select_4c7.o select_4cz7.o select_4nz7.o select_5c7.o select_5cz7.o select_5nz7.o select_5p7.o select_6p7.o select_4c9.o select_4cz9.o select_4nz9.o select_5c9.o select_5cz9.o select_5nz9.o color_weighted.o -lX11 -lm make[1]: Leaving directory `/build/buildd/garlic-1.6' cp .garlicrc garlicrc /usr/bin/fakeroot debian/rules binary test -x debian/rules dh_testroot dh_clean -k dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_installdirs -A mkdir -p "." Adding cdbs dependencies to debian/garlic.substvars dh_installdirs -pgarlic dh_installdocs -pgarlic ./README ./TODO ./BUGS dh_installexamples -pgarlic dh_installman -pgarlic dh_installinfo -pgarlic dh_installmenu -pgarlic dh_installcron -pgarlic dh_installinit -pgarlic dh_installdebconf -pgarlic dh_installemacsen -pgarlic dh_installcatalogs -pgarlic dh_installpam -pgarlic dh_installlogrotate -pgarlic dh_installlogcheck -pgarlic dh_installchangelogs -pgarlic dh_installudev -pgarlic dh_lintian -pgarlic dh_bugfiles -pgarlic dh_install -pgarlic dh_link -pgarlic dh_installmime -pgarlic dh_installgsettings -pgarlic dh_strip -pgarlic dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: garlic dh_strip debug symbol extraction: packages to act on: garlic dh_strip debug symbol extraction: ignored packages: dpkg-deb: building package `garlic-dbgsym' in `../garlic-dbgsym_1.6-1.1_i386.ddeb'. dh_compress -pgarlic dh_fixperms -pgarlic dh_makeshlibs -pgarlic dh_installdeb -pgarlic dh_perl -pgarlic dh_shlibdeps -pgarlic dh_gencontrol -pgarlic # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pgarlic ; fi dh_md5sums -pgarlic dh_builddeb -pgarlic INFO: pkgstriptranslations version 116 pkgstriptranslations: processing garlic (in debian/garlic); do_strip: , oemstrip: debian/garlic/usr/share/applications/garlic.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/garlic/DEBIAN/control, package garlic, directory debian/garlic pkgstripfiles: Truncating usr/share/doc/garlic/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package garlic took 0 s dpkg-deb: warning: 'debian/garlic/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `garlic' in `../garlic_1.6-1.1_i386.deb'. chmod 644 *.script dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../garlic_1.6-1.1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build garlic-1.6 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120501-0202 Publishing debug debs. chroot-autobuild/build/buildd/garlic_1.6-1.1_i386.deb: new debian package, version 2.0. size 258544 bytes: control archive= 2877 bytes. 14 bytes, 1 lines conffiles 1574 bytes, 35 lines control 4112 bytes, 55 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: garlic Version: 1.6-1.1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 787 Depends: libc6 (>= 2.7), libx11-6 Suggests: garlic-doc, openbabel Section: science Priority: optional Homepage: http://www.zucic.org/garlic/ Description: A visualization program for biomolecules Garlic is written for the investigation of membrane proteins. It may be used to visualize other proteins, as well as some geometric objects. This version of garlic recognizes PDB format version 2.1. Garlic may also be used to analyze protein sequences. . It only depends on the X libraries, no other libraries are needed. . Features include: - The slab position and thickness are visible in a small window. - Atomic bonds as well as atoms are treated as independent drawable objects. - The atomic and bond colors depend on position. Five mapping modes are available (as for slab). - Capable to display stereo image. - Capable to display other geometric objects, like membrane. - Atomic information is available for atom covered by the mouse pointer. No click required, just move the mouse pointer over the structure! - Capable to load more than one structure. - Capable to draw Ramachandran plot, helical wheel, Venn diagram, averaged hydrophobicity and hydrophobic moment plot. - The command prompt is available at the bottom of the main window. It is able to display one error message and one command string. chroot-autobuild/build/buildd/garlic_1.6-1.1_i386.deb: drwxr-xr-x root/root 0 2012-05-01 02:02 ./ drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/ drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/ drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/doc/garlic/ -rw-r--r-- root/root 108 2003-04-01 09:46 ./usr/share/doc/garlic/BUGS -rw-r--r-- root/root 2110 2001-02-05 12:40 ./usr/share/doc/garlic/ENVIRONMENT -rw-r--r-- root/root 758 2003-04-01 09:56 ./usr/share/doc/garlic/HISTORY -rw-r--r-- root/root 1944 2006-01-21 19:37 ./usr/share/doc/garlic/README -rw-r--r-- root/root 364 2006-01-12 13:53 ./usr/share/doc/garlic/TODO -rw-r--r-- root/root 1203 2012-05-01 02:00 ./usr/share/doc/garlic/copyright drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/doc/garlic/examples/ -rw-r--r-- root/root 2106 2002-01-24 16:52 ./usr/share/doc/garlic/examples/adrenalin.pdb -rw-r--r-- root/root 2106 2002-01-24 16:52 ./usr/share/doc/garlic/examples/adrenaline.pdb -rw-r--r-- root/root 162 2003-03-12 14:30 ./usr/share/doc/garlic/examples/arrow.pdb -rw-r--r-- root/root 1444 2006-01-21 19:43 ./usr/share/doc/garlic/examples/ascorbic-acid.pdb -rw-r--r-- root/root 3995 2003-02-24 10:34 ./usr/share/doc/garlic/examples/borneol.pdb -rw-r--r-- root/root 2814 2003-01-03 20:51 ./usr/share/doc/garlic/examples/box.pdb -rw-r--r-- root/root 1265 2001-02-28 09:28 ./usr/share/doc/garlic/examples/phe.pdb -rw-r--r-- root/root 81 2003-04-15 12:43 ./usr/share/doc/garlic/examples/singleatom.pdb -rw-r--r-- root/root 162 2002-03-11 22:21 ./usr/share/doc/garlic/examples/singlebond.pdb -rw-r--r-- root/root 2187 2000-03-20 12:36 ./usr/share/doc/garlic/examples/trp.pdb -rw-r--r-- root/root 284 2003-10-20 08:15 ./usr/share/doc/garlic/examples/water.pdb -rw-r--r-- root/root 3110 2004-10-28 12:42 ./usr/share/doc/garlic/examples/18-porins.script -rw-r--r-- root/root 163 2000-02-09 19:05 ./usr/share/doc/garlic/examples/1mal.script -rw-r--r-- root/root 2462 2006-04-04 15:10 ./usr/share/doc/garlic/examples/22porins.script -rw-r--r-- root/root 212 2000-02-13 12:42 ./usr/share/doc/garlic/examples/2fcp.script -rw-r--r-- root/root 129 2000-02-09 19:05 ./usr/share/doc/garlic/examples/2omf.script -rw-r--r-- root/root 218 2004-10-28 07:28 ./usr/share/doc/garlic/examples/2por.script -rw-r--r-- root/root 1519 2002-09-13 12:52 ./usr/share/doc/garlic/examples/atoms.script -rwxr-xr-x root/root 622 2006-05-26 10:21 ./usr/share/doc/garlic/examples/backup-hyd.script -rw-r--r-- root/root 147 2004-09-09 11:14 ./usr/share/doc/garlic/examples/barrel.script -rw-r--r-- root/root 838 2003-02-10 22:47 ./usr/share/doc/garlic/examples/bonds.script -rw-r--r-- root/root 96 2004-04-26 12:36 ./usr/share/doc/garlic/examples/ccacaa.script -rw-r--r-- root/root 1239 2002-09-13 12:54 ./usr/share/doc/garlic/examples/colors.script -rw-r--r-- root/root 475 2000-03-14 08:10 ./usr/share/doc/garlic/examples/dance.script -rw-r--r-- root/root 1115 2003-04-04 09:25 ./usr/share/doc/garlic/examples/gallery.script -rw-r--r-- root/root 239 2000-03-29 19:41 ./usr/share/doc/garlic/examples/geo.script -rw-r--r-- root/root 203 2002-11-30 17:09 ./usr/share/doc/garlic/examples/hyb.script -rw-r--r-- root/root 2862 2002-12-15 21:52 ./usr/share/doc/garlic/examples/many-proteins.script -rw-r--r-- root/root 314 2006-05-02 11:47 ./usr/share/doc/garlic/examples/patt.script -rw-r--r-- root/root 514 2003-05-20 08:08 ./usr/share/doc/garlic/examples/patterns.script -rw-r--r-- root/root 346 2003-04-17 08:53 ./usr/share/doc/garlic/examples/patterns2.script -rw-r--r-- root/root 338 2003-04-17 08:53 ./usr/share/doc/garlic/examples/patterns3.script -rw-r--r-- root/root 440 2004-04-26 09:03 ./usr/share/doc/garlic/examples/porins.script -rw-r--r-- root/root 485 2004-04-26 08:55 ./usr/share/doc/garlic/examples/porins2.script -rw-r--r-- root/root 812 2004-08-30 07:42 ./usr/share/doc/garlic/examples/porins3.script -rw-r--r-- root/root 938 2004-04-26 09:25 ./usr/share/doc/garlic/examples/porins4.script -rw-r--r-- root/root 1189 2002-09-19 21:48 ./usr/share/doc/garlic/examples/probes.script -rw-r--r-- root/root 712 2000-06-01 12:36 ./usr/share/doc/garlic/examples/rainbow.script -rw-r--r-- root/root 338 2000-02-01 17:55 ./usr/share/doc/garlic/examples/sample.script -rw-r--r-- root/root 73 2003-03-31 08:52 ./usr/share/doc/garlic/examples/test.script -rw-r--r-- root/root 284 2004-09-10 08:20 ./usr/share/doc/garlic/examples/two-positive.script -rw-r--r-- root/root 5988 2001-06-13 19:00 ./usr/share/doc/garlic/examples/residues.pdb.gz -rw-r--r-- root/root 647 2006-03-09 09:31 ./usr/share/doc/garlic/examples/18porins2.script.gz -rw-r--r-- root/root 1748 2012-05-01 02:02 ./usr/share/doc/garlic/changelog.Debian.gz drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/man/man1/ -rw-r--r-- root/root 2411 2012-05-01 02:02 ./usr/share/man/man1/garlic.1.gz drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/menu/ -rw-r--r-- root/root 202 2012-05-01 02:00 ./usr/share/menu/garlic drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/applications/ -rw-r--r-- root/root 414 2012-05-01 02:00 ./usr/share/applications/garlic.desktop drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/share/pixmaps/ -rw-r--r-- root/root 2865 2001-05-25 09:58 ./usr/share/pixmaps/garlic.xpm drwxr-xr-x root/root 0 2012-05-01 02:02 ./usr/bin/ -rwxr-xr-x root/root 678132 2012-05-01 02:02 ./usr/bin/garlic drwxr-xr-x root/root 0 2012-05-01 02:02 ./etc/ -rw-r--r-- root/root 9201 2012-05-01 02:02 ./etc/garlicrc garlic_1.6-1.1_i386.changes: Format: 1.8 Date: Sun, 15 Apr 2012 14:16:47 +0200 Source: garlic Binary: garlic Architecture: i386 Version: 1.6-1.1 Distribution: quantal Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: gregor herrmann Description: garlic - A visualization program for biomolecules Closes: 666285 Changes: garlic (1.6-1.1) unstable; urgency=low . * Non-maintainer upload. * Fix "FTBFS: cp: cannot stat `./garlic': No such file or directory": add build-arch target in debian/rules. (Closes: #666285) Checksums-Sha1: 1597919a7be918fafdc6b808e18b4ef64b80da91 258544 garlic_1.6-1.1_i386.deb Checksums-Sha256: 54faf0e5f8e0bd40fe49c158ca2b333d15e60b444109921f81db64b9f534bbfa 258544 garlic_1.6-1.1_i386.deb Files: 82f2e675fbd42cf5b6c8948c51bfa91a 258544 science optional garlic_1.6-1.1_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120501-0202 Build needed 00:01:25, 22160k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '5bf67c1c8984e73ffdae199ff2f864b604daa3a9'] Scanning for processes to kill in build /home/buildd/build-5bf67c1c8984e73ffdae199ff2f864b604daa3a9/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '5bf67c1c8984e73ffdae199ff2f864b604daa3a9'] Unmounting chroot for build 5bf67c1c8984e73ffdae199ff2f864b604daa3a9... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '5bf67c1c8984e73ffdae199ff2f864b604daa3a9'] Removing build 5bf67c1c8984e73ffdae199ff2f864b604daa3a9