https://launchpad.net/ubuntu/+source/gatb-core/1.4.1+dfsg-2/+build/15096089 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-019 4.4.0-130-generic #156-Ubuntu SMP Thu Jun 14 09:18:59 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 Jul 23:26:13 ntpdate[1787]: adjust time server 10.211.37.1 offset 0.015738 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15096089 /home/buildd/filecache-default/17124f3eec304530bbb077109f97da7d4ad52147 Creating target for build PACKAGEBUILD-15096089 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15096089 Starting target for build PACKAGEBUILD-15096089 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15096089 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15096089 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15096089 Updating target for build PACKAGEBUILD-15096089 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x Packages [955 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe s390x Packages [8282 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5014 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x Packages [53.2 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [31.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x Packages [121 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [78.8 kB] Fetched 15.5 MB in 3s (4566 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libprocps6 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libargon2-1 libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 99 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 47.7 MB of archives. After this operation, 2187 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main s390x base-files s390x 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo6 s390x 6.1+20180210-4ubuntu1 [80.5 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x debianutils s390x 4.8.6 [85.2 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x bash s390x 4.4.18-2ubuntu2 [583 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdutils s390x 1:2.32-0.1ubuntu1 [58.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x tar s390x 1.30+dfsg-2 [230 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x dpkg s390x 1.19.0.5ubuntu3 [1121 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libext2fs2 s390x 1.44.2-1 [154 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x e2fsprogs s390x 1.44.2-1 [369 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-bin s390x 6.1+20180210-4ubuntu1 [160 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libperl5.26 s390x 5.26.2-6 [3378 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x perl s390x 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x perl-base s390x 5.26.2-6 [1310 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x sed s390x 4.5-1 [183 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x libuuid1 s390x 2.32-0.1ubuntu1 [20.0 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main s390x libblkid1 s390x 2.32-0.1ubuntu1 [120 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x libfdisk1 s390x 2.32-0.1ubuntu1 [155 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw6 s390x 6.1+20180210-4ubuntu1 [120 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libselinux1 s390x 2.8-1build1 [64.2 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main s390x libmount1 s390x 2.32-0.1ubuntu1 [129 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x libsmartcols1 s390x 2.32-0.1ubuntu1 [81.9 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x fdisk s390x 2.32-0.1ubuntu1 [103 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x util-linux s390x 2.32-0.1ubuntu1 [881 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x base-passwd s390x 3.5.45 [46.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x libgomp1 s390x 8.1.0-9ubuntu1 [69.9 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main s390x libitm1 s390x 8.1.0-9ubuntu1 [26.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-8-base s390x 8.1.0-9ubuntu1 [18.9 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcc1 s390x 1:8.1.0-9ubuntu1 [25.1 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main s390x libcc1-0 s390x 8.1.0-9ubuntu1 [37.2 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main s390x libatomic1 s390x 8.1.0-9ubuntu1 [8420 B] Get:33 http://ftpmaster.internal/ubuntu cosmic/main s390x libstdc++6 s390x 8.1.0-9ubuntu1 [396 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x liblz4-1 s390x 1.8.2-1ubuntu1 [58.4 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libudev1 s390x 238-5ubuntu2 [52.6 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x libapt-pkg5.0 s390x 1.7.0~alpha1 [747 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x debconf all 1.5.67 [124 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x adduser all 3.117ubuntu1 [163 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x libgpg-error0 s390x 1.31-1 [53.1 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcrypt20 s390x 1.8.2-2ubuntu1 [350 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gpgv s390x 2.2.8-1ubuntu1 [181 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x libseccomp2 s390x 2.3.3-3ubuntu1 [41.3 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x apt s390x 1.7.0~alpha1 [1134 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libapparmor1 s390x 2.12-4ubuntu6 [30.3 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x libcap-ng0 s390x 0.7.9-1 [11.0 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libaudit1 s390x 1:2.8.3-1ubuntu2 [37.1 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libargon2-1 s390x 0~20171227-0.1 [35.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libargon2-0 s390x 0~20171227-0.1 [4536 B] Get:50 http://ftpmaster.internal/ubuntu cosmic/main s390x libcryptsetup12 s390x 2:2.0.2-1ubuntu2 [120 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x libkmod2 s390x 25-1ubuntu1 [38.3 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x mount s390x 2.32-0.1ubuntu1 [100 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses6 s390x 6.1+20180210-4ubuntu1 [94.4 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main s390x libprocps7 s390x 2:3.3.15-2ubuntu1 [31.0 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main s390x procps s390x 2:3.3.15-2ubuntu1 [221 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x systemd s390x 238-5ubuntu2 [2654 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsystemd0 s390x 238-5ubuntu2 [191 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x systemd-sysv s390x 238-5ubuntu2 [13.7 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main s390x libcom-err2 s390x 1.44.2-1 [9116 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main s390x libsepol1 s390x 2.8-1 [227 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main s390x libsemanage-common all 2.8-1build1 [7000 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main s390x libsemanage1 s390x 2.8-1build1 [79.0 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main s390x libss2 s390x 1.44.2-1 [10.7 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main s390x libgmp10 s390x 2:6.1.2+dfsg-3 [225 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main s390x libp11-kit0 s390x 0.23.12-2 [188 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main s390x libtasn1-6 s390x 4.13-3 [34.1 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses5 s390x 6.1+20180210-4ubuntu1 [89.1 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw5 s390x 6.1+20180210-4ubuntu1 [108 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo5 s390x 6.1+20180210-4ubuntu1 [76.4 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main s390x readline-common all 7.0-5 [52.2 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main s390x libreadline7 s390x 7.0-5 [117 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main s390x libslang2 s390x 2.3.2-1ubuntu1 [417 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsqlite3-0 s390x 3.24.0-1 [472 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main s390x libssl1.1 s390x 1.1.0g-2ubuntu5 [810 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main s390x openssl s390x 1.1.0g-2ubuntu5 [519 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main s390x tzdata all 2018e-1 [188 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main s390x libbinutils s390x 2.30-22ubuntu1 [306 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-common s390x 2.30-22ubuntu1 [193 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils s390x 2.30-22ubuntu1 [3328 B] Get:80 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-s390x-linux-gnu s390x 2.30-22ubuntu1 [1723 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main s390x libasan4 s390x 7.3.0-24ubuntu1 [318 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main s390x libubsan0 s390x 7.3.0-24ubuntu1 [120 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main s390x g++-7 s390x 7.3.0-24ubuntu1 [5994 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-7 s390x 7.3.0-24ubuntu1 [5892 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main s390x libstdc++-7-dev s390x 7.3.0-24ubuntu1 [1454 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcc-7-dev s390x 7.3.0-24ubuntu1 [640 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main s390x cpp-7 s390x 7.3.0-24ubuntu1 [5185 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-7-base s390x 7.3.0-24ubuntu1 [18.9 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main s390x cpp s390x 4:7.3.0-3ubuntu3 [27.5 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc s390x 4:7.3.0-3ubuntu3 [5204 B] Get:91 http://ftpmaster.internal/ubuntu cosmic/main s390x g++ s390x 4:7.3.0-3ubuntu3 [1592 B] Get:92 http://ftpmaster.internal/ubuntu cosmic/main s390x dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main s390x libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main s390x build-essential s390x 12.5ubuntu2 [4740 B] Get:95 http://ftpmaster.internal/ubuntu cosmic/main s390x e2fslibs s390x 1.44.2-1 [2700 B] Get:96 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x pinentry-curses s390x 1.1.0-1build2 [34.4 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main s390x libnpth0 s390x 1.5-4 [7532 B] Get:98 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gpg s390x 2.2.8-1ubuntu1 [428 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gpgconf s390x 2.2.8-1ubuntu1 [115 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gpg-agent s390x 2.2.8-1ubuntu1 [208 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main s390x libcomerr2 s390x 1.44.2-1 [2700 B] Get:102 http://ftpmaster.internal/ubuntu cosmic/main s390x libusb-0.1-4 s390x 2:0.1.12-32 [16.5 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x linux-libc-dev s390x 4.17.0-4.5 [993 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main s390x pkgbinarymangler all 139 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.7 MB in 1s (62.9 MB/s) (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_s390x.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:s390x. (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:s390x (6.1+20180210-4ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_s390x.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_s390x.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_s390x.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_s390x.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_s390x.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.2-1_s390x.deb ... Unpacking libext2fs2:s390x (1.44.2-1) over (1.44.1-1) ... Setting up libext2fs2:s390x (1.44.2-1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.2-1_s390x.deb ... Unpacking e2fsprogs (1.44.2-1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.2-1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking ncurses-bin (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-4ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-6_s390x.deb ... Unpacking perl (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-6_all.deb ... Unpacking perl-modules-5.26 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-6_s390x.deb ... Unpacking libperl5.26:s390x (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-base_5.26.2-6_s390x.deb ... Unpacking perl-base (5.26.2-6) over (5.26.1-6) ... Setting up perl-base (5.26.2-6) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../archives/sed_4.5-1_s390x.deb ... Unpacking sed (4.5-1) over (4.4-2) ... Setting up sed (4.5-1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libuuid1_2.32-0.1ubuntu1_s390x.deb ... Unpacking libuuid1:s390x (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:s390x (2.32-0.1ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libblkid1_2.32-0.1ubuntu1_s390x.deb ... Unpacking libblkid1:s390x (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:s390x (2.32-0.1ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.32-0.1ubuntu1_s390x.deb ... Unpacking libfdisk1:s390x (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:s390x (2.32-0.1ubuntu1) ... Selecting previously unselected package libncursesw6:s390x. (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking libncursesw6:s390x (6.1+20180210-4ubuntu1) ... Setting up libncursesw6:s390x (6.1+20180210-4ubuntu1) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libselinux1_2.8-1build1_s390x.deb ... Unpacking libselinux1:s390x (2.8-1build1) over (2.7-2build2) ... Setting up libselinux1:s390x (2.8-1build1) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libmount1_2.32-0.1ubuntu1_s390x.deb ... Unpacking libmount1:s390x (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:s390x (2.32-0.1ubuntu1) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.32-0.1ubuntu1_s390x.deb ... Unpacking libsmartcols1:s390x (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:s390x (2.32-0.1ubuntu1) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../fdisk_2.32-0.1ubuntu1_s390x.deb ... Unpacking fdisk (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.32-0.1ubuntu1) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../util-linux_2.32-0.1ubuntu1_s390x.deb ... Unpacking util-linux (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up util-linux (2.32-0.1ubuntu1) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.45_s390x.deb ... Unpacking base-passwd (3.5.45) over (3.5.44) ... Setting up base-passwd (3.5.45) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20180210-4ubuntu1_all.deb ... Unpacking ncurses-base (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-base (6.1+20180210-4ubuntu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libgomp1_8.1.0-9ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (8.1.0-9ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libitm1_8.1.0-9ubuntu1_s390x.deb ... Unpacking libitm1:s390x (8.1.0-9ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../gcc-8-base_8.1.0-9ubuntu1_s390x.deb ... Unpacking gcc-8-base:s390x (8.1.0-9ubuntu1) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:s390x (8.1.0-9ubuntu1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.1.0-9ubuntu1_s390x.deb ... Unpacking libgcc1:s390x (1:8.1.0-9ubuntu1) over (1:8-20180414-1ubuntu2) ... Setting up libgcc1:s390x (1:8.1.0-9ubuntu1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libcc1-0_8.1.0-9ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (8.1.0-9ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libatomic1_8.1.0-9ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (8.1.0-9ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libstdc++6_8.1.0-9ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (8.1.0-9ubuntu1) over (8-20180414-1ubuntu2) ... Setting up libstdc++6:s390x (8.1.0-9ubuntu1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.8.2-1ubuntu1_s390x.deb ... Unpacking liblz4-1:s390x (1.8.2-1ubuntu1) over (0.0~r131-2ubuntu3) ... Setting up liblz4-1:s390x (1.8.2-1ubuntu1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libudev1_238-5ubuntu2_s390x.deb ... Unpacking libudev1:s390x (238-5ubuntu2) over (237-3ubuntu10) ... Setting up libudev1:s390x (238-5ubuntu2) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.7.0~alpha1_s390x.deb ... Unpacking libapt-pkg5.0:s390x (1.7.0~alpha1) over (1.6.1) ... Setting up libapt-pkg5.0:s390x (1.7.0~alpha1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../debconf_1.5.67_all.deb ... Unpacking debconf (1.5.67) over (1.5.66) ... Setting up debconf (1.5.67) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../adduser_3.117ubuntu1_all.deb ... Unpacking adduser (3.117ubuntu1) over (3.116ubuntu1) ... Setting up adduser (3.117ubuntu1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.31-1_s390x.deb ... Unpacking libgpg-error0:s390x (1.31-1) over (1.27-6) ... Setting up libgpg-error0:s390x (1.31-1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.2-2ubuntu1_s390x.deb ... Unpacking libgcrypt20:s390x (1.8.2-2ubuntu1) over (1.8.1-4ubuntu1) ... Setting up libgcrypt20:s390x (1.8.2-2ubuntu1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.8-1ubuntu1_s390x.deb ... Unpacking gpgv (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Setting up gpgv (2.2.8-1ubuntu1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-3ubuntu1_s390x.deb ... Unpacking libseccomp2:s390x (2.3.3-3ubuntu1) over (2.3.1-2.1ubuntu4) ... Setting up libseccomp2:s390x (2.3.3-3ubuntu1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../apt_1.7.0~alpha1_s390x.deb ... Unpacking apt (1.7.0~alpha1) over (1.6.1) ... Setting up apt (1.7.0~alpha1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.12-4ubuntu6_s390x.deb ... Unpacking libapparmor1:s390x (2.12-4ubuntu6) over (2.12-4ubuntu5) ... Preparing to unpack .../libaudit-common_1%3a2.8.3-1ubuntu2_all.deb ... Unpacking libaudit-common (1:2.8.3-1ubuntu2) over (1:2.8.2-1ubuntu1) ... Setting up libaudit-common (1:2.8.3-1ubuntu2) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-1_s390x.deb ... Unpacking libcap-ng0:s390x (0.7.9-1) over (0.7.7-3.1) ... Setting up libcap-ng0:s390x (0.7.9-1) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.3-1ubuntu2_s390x.deb ... Unpacking libaudit1:s390x (1:2.8.3-1ubuntu2) over (1:2.8.2-1ubuntu1) ... Setting up libaudit1:s390x (1:2.8.3-1ubuntu2) ... Selecting previously unselected package libargon2-1:s390x. (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../0-libargon2-1_0~20171227-0.1_s390x.deb ... Unpacking libargon2-1:s390x (0~20171227-0.1) ... Preparing to unpack .../1-libargon2-0_0~20171227-0.1_s390x.deb ... Unpacking libargon2-0 (0~20171227-0.1) over (0~20161029-1.1) ... Preparing to unpack .../2-libcryptsetup12_2%3a2.0.2-1ubuntu2_s390x.deb ... Unpacking libcryptsetup12:s390x (2:2.0.2-1ubuntu2) over (2:2.0.2-1ubuntu1) ... Preparing to unpack .../3-libkmod2_25-1ubuntu1_s390x.deb ... Unpacking libkmod2:s390x (25-1ubuntu1) over (24-1ubuntu3) ... Preparing to unpack .../4-mount_2.32-0.1ubuntu1_s390x.deb ... Unpacking mount (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Selecting previously unselected package libncurses6:s390x. Preparing to unpack .../5-libncurses6_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking libncurses6:s390x (6.1+20180210-4ubuntu1) ... Selecting previously unselected package libprocps7:s390x. Preparing to unpack .../6-libprocps7_2%3a3.3.15-2ubuntu1_s390x.deb ... Unpacking libprocps7:s390x (2:3.3.15-2ubuntu1) ... Preparing to unpack .../7-procps_2%3a3.3.15-2ubuntu1_s390x.deb ... Unpacking procps (2:3.3.15-2ubuntu1) over (2:3.3.12-3ubuntu1) ... Setting up libargon2-1:s390x (0~20171227-0.1) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up libcryptsetup12:s390x (2:2.0.2-1ubuntu2) ... (Reading database ... 12423 files and directories currently installed.) Preparing to unpack .../systemd_238-5ubuntu2_s390x.deb ... Unpacking systemd (238-5ubuntu2) over (237-3ubuntu10) ... Preparing to unpack .../libsystemd0_238-5ubuntu2_s390x.deb ... Unpacking libsystemd0:s390x (238-5ubuntu2) over (237-3ubuntu10) ... Setting up libsystemd0:s390x (238-5ubuntu2) ... Setting up libapparmor1:s390x (2.12-4ubuntu6) ... Setting up libkmod2:s390x (25-1ubuntu1) ... Setting up mount (2.32-0.1ubuntu1) ... Setting up libncurses6:s390x (6.1+20180210-4ubuntu1) ... Setting up libprocps7:s390x (2:3.3.15-2ubuntu1) ... Setting up procps (2:3.3.15-2ubuntu1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Installing new version of config file /etc/sysctl.d/10-network-security.conf ... Setting up systemd (238-5ubuntu2) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../systemd-sysv_238-5ubuntu2_s390x.deb ... Unpacking systemd-sysv (238-5ubuntu2) over (237-3ubuntu10) ... Preparing to unpack .../libcom-err2_1.44.2-1_s390x.deb ... Unpacking libcom-err2:s390x (1.44.2-1) over (1.44.1-1) ... Setting up libcom-err2:s390x (1.44.2-1) ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../libsepol1_2.8-1_s390x.deb ... Unpacking libsepol1:s390x (2.8-1) over (2.7-1) ... Setting up libsepol1:s390x (2.8-1) ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-1build1_all.deb ... Unpacking libsemanage-common (2.8-1build1) over (2.7-2build2) ... Setting up libsemanage-common (2.8-1build1) ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-1build1_s390x.deb ... Unpacking libsemanage1:s390x (2.8-1build1) over (2.7-2build2) ... Setting up libsemanage1:s390x (2.8-1build1) ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../libss2_1.44.2-1_s390x.deb ... Unpacking libss2:s390x (1.44.2-1) over (1.44.1-1) ... Setting up libss2:s390x (1.44.2-1) ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-3_s390x.deb ... Unpacking libgmp10:s390x (2:6.1.2+dfsg-3) over (2:6.1.2+dfsg-2) ... Setting up libgmp10:s390x (2:6.1.2+dfsg-3) ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.12-2_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.12-2) over (0.23.9-2) ... Setting up libp11-kit0:s390x (0.23.12-2) ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3_s390x.deb ... Unpacking libtasn1-6:s390x (4.13-3) over (4.13-2) ... Setting up libtasn1-6:s390x (4.13-3) ... (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../libncurses5_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking libncurses5:s390x (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Preparing to unpack .../libncursesw5_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking libncursesw5:s390x (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking libtinfo5:s390x (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up libtinfo5:s390x (6.1+20180210-4ubuntu1) ... (Reading database ... 12426 files and directories currently installed.) Preparing to unpack .../00-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) over (7.0-3) ... Preparing to unpack .../01-libreadline7_7.0-5_s390x.deb ... Unpacking libreadline7:s390x (7.0-5) over (7.0-3) ... Preparing to unpack .../02-libslang2_2.3.2-1ubuntu1_s390x.deb ... Unpacking libslang2:s390x (2.3.2-1ubuntu1) over (2.3.1a-3ubuntu1) ... Preparing to unpack .../03-libsqlite3-0_3.24.0-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.24.0-1) over (3.22.0-1) ... Preparing to unpack .../04-libssl1.1_1.1.0g-2ubuntu5_s390x.deb ... Unpacking libssl1.1:s390x (1.1.0g-2ubuntu5) over (1.1.0g-2ubuntu4) ... Preparing to unpack .../05-openssl_1.1.0g-2ubuntu5_s390x.deb ... Unpacking openssl (1.1.0g-2ubuntu5) over (1.1.0g-2ubuntu4) ... Preparing to unpack .../06-tzdata_2018e-1_all.deb ... Unpacking tzdata (2018e-1) over (2018d-1) ... Preparing to unpack .../07-libbinutils_2.30-22ubuntu1_s390x.deb ... Unpacking libbinutils:s390x (2.30-22ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../08-binutils-common_2.30-22ubuntu1_s390x.deb ... Unpacking binutils-common:s390x (2.30-22ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../09-binutils_2.30-22ubuntu1_s390x.deb ... Unpacking binutils (2.30-22ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../10-binutils-s390x-linux-gnu_2.30-22ubuntu1_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.30-22ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../11-libasan4_7.3.0-24ubuntu1_s390x.deb ... Unpacking libasan4:s390x (7.3.0-24ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../12-libubsan0_7.3.0-24ubuntu1_s390x.deb ... Unpacking libubsan0:s390x (7.3.0-24ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../13-g++-7_7.3.0-24ubuntu1_s390x.deb ... Unpacking g++-7 (7.3.0-24ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../14-gcc-7_7.3.0-24ubuntu1_s390x.deb ... Unpacking gcc-7 (7.3.0-24ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../15-libstdc++-7-dev_7.3.0-24ubuntu1_s390x.deb ... Unpacking libstdc++-7-dev:s390x (7.3.0-24ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../16-libgcc-7-dev_7.3.0-24ubuntu1_s390x.deb ... Unpacking libgcc-7-dev:s390x (7.3.0-24ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../17-cpp-7_7.3.0-24ubuntu1_s390x.deb ... Unpacking cpp-7 (7.3.0-24ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../18-gcc-7-base_7.3.0-24ubuntu1_s390x.deb ... Unpacking gcc-7-base:s390x (7.3.0-24ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../19-cpp_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking cpp (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../20-gcc_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking gcc (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../21-g++_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking g++ (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../22-dpkg-dev_1.19.0.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../23-libdpkg-perl_1.19.0.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../24-build-essential_12.5ubuntu2_s390x.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../25-e2fslibs_1.44.2-1_s390x.deb ... Unpacking e2fslibs:s390x (1.44.2-1) over (1.44.1-1) ... Preparing to unpack .../26-pinentry-curses_1.1.0-1build2_s390x.deb ... Unpacking pinentry-curses (1.1.0-1build2) over (1.1.0-1) ... Preparing to unpack .../27-libnpth0_1.5-4_s390x.deb ... Unpacking libnpth0:s390x (1.5-4) over (1.5-3) ... Preparing to unpack .../28-gpg_2.2.8-1ubuntu1_s390x.deb ... Unpacking gpg (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../29-gpgconf_2.2.8-1ubuntu1_s390x.deb ... Unpacking gpgconf (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../30-gpg-agent_2.2.8-1ubuntu1_s390x.deb ... Unpacking gpg-agent (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../31-libcomerr2_1.44.2-1_s390x.deb ... Unpacking libcomerr2:s390x (1.44.2-1) over (1.44.1-1) ... Preparing to unpack .../32-libusb-0.1-4_2%3a0.1.12-32_s390x.deb ... Unpacking libusb-0.1-4:s390x (2:0.1.12-32) over (2:0.1.12-31) ... Preparing to unpack .../33-linux-libc-dev_4.17.0-4.5_s390x.deb ... Unpacking linux-libc-dev:s390x (4.17.0-4.5) over (4.15.0-20.21) ... Preparing to unpack .../34-pkgbinarymangler_139_all.deb ... Unpacking pkgbinarymangler (139) over (138) ... Setting up libnpth0:s390x (1.5-4) ... Setting up libncurses5:s390x (6.1+20180210-4ubuntu1) ... Setting up libgomp1:s390x (8.1.0-9ubuntu1) ... Setting up libatomic1:s390x (8.1.0-9ubuntu1) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:s390x (8.1.0-9ubuntu1) ... Setting up pkgbinarymangler (139) ... Setting up e2fslibs:s390x (1.44.2-1) ... Setting up libncursesw5:s390x (6.1+20180210-4ubuntu1) ... Setting up libreadline7:s390x (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jul 7 23:26:33 UTC 2018. Universal Time is now: Sat Jul 7 23:26:33 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (238-5ubuntu2) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:s390x (4.17.0-4.5) ... Setting up perl-modules-5.26 (5.26.2-6) ... Setting up gcc-7-base:s390x (7.3.0-24ubuntu1) ... Setting up binutils-common:s390x (2.30-22ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:s390x (5.26.2-6) ... Setting up libssl1.1:s390x (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:s390x (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libcomerr2:s390x (1.44.2-1) ... Setting up libslang2:s390x (2.3.2-1ubuntu1) ... Setting up libusb-0.1-4:s390x (2:0.1.12-32) ... Setting up libitm1:s390x (8.1.0-9ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libasan4:s390x (7.3.0-24ubuntu1) ... Setting up libbinutils:s390x (2.30-22ubuntu1) ... Setting up libubsan0:s390x (7.3.0-24ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.30-22ubuntu1) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:s390x (7.3.0-24ubuntu1) ... Setting up cpp-7 (7.3.0-24ubuntu1) ... Setting up libstdc++-7-dev:s390x (7.3.0-24ubuntu1) ... Setting up perl (5.26.2-6) ... Setting up binutils (2.30-22ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-24ubuntu1) ... Setting up g++-7 (7.3.0-24ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15096089 s390x cosmic-proposed -c chroot:build-PACKAGEBUILD-15096089 --arch=s390x --dist=cosmic-proposed --nolog gatb-core_1.4.1+dfsg-2.dsc Initiating build PACKAGEBUILD-15096089 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-130-generic #156-Ubuntu SMP Thu Jun 14 09:18:59 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-019.buildd +==============================================================================+ | gatb-core 1.4.1+dfsg-2 (s390x) 07 Jul 2018 23:26 | +==============================================================================+ Package: gatb-core Version: 1.4.1+dfsg-2 Source Version: 1.4.1+dfsg-2 Distribution: cosmic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/gatb-core-bqABm0/gatb-core-1.4.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gatb-core-bqABm0' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15096089/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- gatb-core_1.4.1+dfsg-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-6HcDEy/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-6HcDEy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-6HcDEy/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-6HcDEy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-6HcDEy/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-6HcDEy/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps6 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-6HcDEy/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz Filtered Build-Depends: debhelper (>= 11~), d-shlibs, cmake, libcppunit-dev, libhdf5-dev, libboost-dev, libjsoncpp-dev, doxygen, graphviz dpkg-deb: building package 'sbuild-build-depends-gatb-core-dummy' in '/<>/resolver-NSeSWr/apt_archive/sbuild-build-depends-gatb-core-dummy.deb'. Ign:1 copy:/<>/resolver-NSeSWr/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NSeSWr/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-NSeSWr/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NSeSWr/apt_archive ./ Sources [265 B] Get:5 copy:/<>/resolver-NSeSWr/apt_archive ./ Packages [587 B] Fetched 2971 B in 213503982334601d 7h 0min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install gatb-core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps6 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libann0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libboost-dev libboost1.65-dev libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcppunit-1.14-0 libcppunit-dev libcroco3 libcurl4 libdatrie1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran4 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhcrypto4-heimdal libhdf5-100 libhdf5-cpp-100 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu60 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblab-gamut1 libldap-2.4-2 libldap-common libllvm6.0 libltdl7 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsz2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libuv1 libwebp6 libwind0-heimdal libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf ucf x11-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff lrzip libboost-doc libboost1.65-doc libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-iostreams1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-regex1.65-dev libboost-serialization1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-test1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev libcppunit-doc libgd-tools krb5-doc krb5-user libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx fonts-liberation libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libann0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libboost-dev libboost1.65-dev libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcppunit-1.14-0 libcppunit-dev libcroco3 libcurl4 libdatrie1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran4 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhcrypto4-heimdal libhdf5-100 libhdf5-cpp-100 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu60 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblab-gamut1 libldap-2.4-2 libldap-common libllvm6.0 libltdl7 liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsz2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libuv1 libwebp6 libwind0-heimdal libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sbuild-build-depends-gatb-core-dummy ucf x11-common zlib1g-dev 0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 65.4 MB of archives. After this operation, 380 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NSeSWr/apt_archive ./ sbuild-build-depends-gatb-core-dummy 0.invalid.0 [912 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libbsd0 s390x 0.9.1-1 [43.1 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x man-db s390x 2.8.3-2 [1007 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x libexpat1 s390x 2.2.5-3 [79.3 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libfreetype6 s390x 2.8.1-2ubuntu2 [314 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x ucf all 3.0038 [50.5 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x fonts-dejavu-core all 2.37-1 [1041 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x fontconfig-config all 2.12.6-0ubuntu2 [55.8 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libfontconfig1 s390x 2.12.6-0ubuntu2 [132 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x fontconfig s390x 2.12.6-0ubuntu2 [168 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x libjpeg-turbo8 s390x 1.5.2-0ubuntu6 [100 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic-mgc s390x 1:5.33-3 [193 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic1 s390x 1:5.33-3 [68.2 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main s390x file s390x 1:5.33-3 [22.7 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x libelf1 s390x 0.170-0.5 [42.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libfribidi0 s390x 0.19.7-3 [25.5 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-0 s390x 2.56.1-2ubuntu1 [1077 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main s390x libicu60 s390x 60.2-6ubuntu1 [7837 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libxml2 s390x 2.9.4+dfsg1-7build1 [588 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext-base s390x 0.19.8.1-6build1 [48.2 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x libedit2 s390x 3.1-20180525-1 [74.0 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x libkrb5support0 s390x 1.16-2build1 [30.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x libk5crypto3 s390x 1.16-2build1 [84.1 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x libkeyutils1 s390x 1.5.9-9.2ubuntu3 [8496 B] Get:28 http://ftpmaster.internal/ubuntu cosmic/main s390x libkrb5-3 s390x 1.16-2build1 [261 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main s390x libgssapi-krb5-2 s390x 1.16-2build1 [110 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main s390x libpsl5 s390x 0.20.2-1 [49.0 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main s390x libxau6 s390x 1:1.0.8-1 [7420 B] Get:32 http://ftpmaster.internal/ubuntu cosmic/main s390x libxdmcp6 s390x 1:1.1.2-3 [10.7 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb1 s390x 1.13-1 [43.6 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libx11-data all 2:1.6.5-1 [113 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libx11-6 s390x 2:1.6.5-1 [542 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x libxext6 s390x 2:1.3.3-1 [27.8 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x autoconf all 2.69-11 [322 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main s390x automake all 1:1.15.1-3ubuntu2 [509 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x autopoint all 0.19.8.1-6build1 [412 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x cmake-data all 3.11.2-1 [1367 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main s390x liblzo2-2 s390x 2.10-0.1 [46.9 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main s390x libarchive13 s390x 3.2.2-4 [269 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x libroken18-heimdal s390x 7.5.0+dfsg-2 [39.4 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x libasn1-8-heimdal s390x 7.5.0+dfsg-2 [147 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main s390x libheimbase1-heimdal s390x 7.5.0+dfsg-2 [27.5 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main s390x libhcrypto4-heimdal s390x 7.5.0+dfsg-2 [82.7 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main s390x libwind0-heimdal s390x 7.5.0+dfsg-2 [47.8 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x libhx509-5-heimdal s390x 7.5.0+dfsg-2 [98.3 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x libkrb5-26-heimdal s390x 7.5.0+dfsg-2 [190 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x libheimntlm0-heimdal s390x 7.5.0+dfsg-2 [14.1 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main s390x libgssapi3-heimdal s390x 7.5.0+dfsg-2 [86.9 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main s390x libsasl2-modules-db s390x 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.9 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main s390x libsasl2-2 s390x 2.1.27~101-g0780600+dfsg-3ubuntu2 [46.5 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main s390x libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main s390x libldap-2.4-2 s390x 2.4.46+dfsg-5ubuntu1 [143 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main s390x libnghttp2-14 s390x 1.32.0-1 [74.1 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2 [51.1 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main s390x libcurl4 s390x 7.60.0-2ubuntu1 [198 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main s390x libjsoncpp1 s390x 1.7.4-3 [70.8 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main s390x librhash0 s390x 1.3.6-2 [77.1 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libuv1 s390x 1.21.0-2 [61.8 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main s390x cmake s390x 3.11.2-1 [2825 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/universe s390x d-shlibs all 0.82 [9880 B] Get:67 http://ftpmaster.internal/ubuntu cosmic/main s390x libtool all 2.4.6-2.1 [195 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-autoreconf all 19 [16.1 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main s390x libarchive-zip-perl all 1.60-1 [83.9 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main s390x libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-strip-nondeterminism all 0.042-1 [5188 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main s390x dwz s390x 0.12-2 [73.2 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext s390x 0.19.8.1-6build1 [858 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main s390x po-debconf all 1.0.20 [232 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main s390x debhelper all 11.3.2ubuntu1 [883 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main s390x libllvm6.0 s390x 1:6.0.1-2ubuntu1 [13.6 MB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main s390x libclang1-6.0 s390x 1:6.0.1-2ubuntu1 [6305 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main s390x libxapian30 s390x 1.4.6-1 [576 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main s390x doxygen s390x 1.8.13-10 [3554 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/universe s390x libann0 s390x 1.1.2+doc-7 [24.9 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libcdt5 s390x 2.40.1-3 [18.9 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libcgraph6 s390x 2.40.1-3 [39.4 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:87 http://ftpmaster.internal/ubuntu cosmic/main s390x libjbig0 s390x 2.1-3.1build1 [26.3 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main s390x libtiff5 s390x 4.0.9-6 [142 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main s390x libwebp6 s390x 0.6.1-2 [149 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main s390x libxpm4 s390x 1:3.5.12-1 [32.6 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main s390x libgd3 s390x 2.2.5-4 [114 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/universe s390x libgts-0.7-5 s390x 0.7.6+darcs121130-4 [137 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main s390x libpixman-1-0 s390x 0.34.0-2 [135 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb-render0 s390x 1.13-1 [14.7 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main s390x libxcb-shm0 s390x 1.13-1 [5528 B] Get:96 http://ftpmaster.internal/ubuntu cosmic/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main s390x libcairo2 s390x 1.15.10-3 [533 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main s390x libltdl7 s390x 2.4.6-2.1 [37.9 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main s390x libthai-data all 0.1.27-2 [133 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main s390x libdatrie1 s390x 0.2.12-1 [18.0 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main s390x libthai0 s390x 0.1.27-2 [18.2 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main s390x libpango-1.0-0 s390x 1.42.1-2 [147 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main s390x libgraphite2-3 s390x 1.3.11-2 [71.3 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main s390x libharfbuzz0b s390x 1.8.2-2 [241 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main s390x libpangoft2-1.0-0 s390x 1.42.1-2 [32.3 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main s390x libpangocairo-1.0-0 s390x 1.42.1-2 [20.8 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libpathplan4 s390x 2.40.1-3 [22.4 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libgvc6 s390x 2.40.1-3 [557 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libgvpr2 s390x 2.40.1-3 [156 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x liblab-gamut1 s390x 2.40.1-3 [177 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main s390x x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main s390x libice6 s390x 2:1.0.9-2 [36.9 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main s390x libsm6 s390x 2:1.2.2-1 [15.3 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main s390x libxt6 s390x 1:1.1.5-1 [147 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main s390x libxmu6 s390x 2:1.1.2-2 [43.8 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main s390x libxaw7 s390x 2:1.0.13-1 [163 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x graphviz s390x 2.40.1-3 [560 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/universe s390x hdf5-helpers s390x 1.10.0-patch1+docs-4build1 [12.3 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/universe s390x libaec0 s390x 1.0.2-1 [19.6 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost1.65-dev s390x 1.65.1+dfsg-0ubuntu9 [7218 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/main s390x libboost-dev s390x 1.65.1.0ubuntu1 [3128 B] Get:122 http://ftpmaster.internal/ubuntu cosmic/universe s390x libcppunit-1.14-0 s390x 1.14.0-3 [73.5 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/universe s390x libcppunit-dev s390x 1.14.0-3 [129 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic/main s390x libgfortran4 s390x 7.3.0-24ubuntu1 [275 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/universe s390x libsz2 s390x 1.0.2-1 [5084 B] Get:126 http://ftpmaster.internal/ubuntu cosmic/universe s390x libhdf5-100 s390x 1.10.0-patch1+docs-4build1 [1087 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/universe s390x libhdf5-cpp-100 s390x 1.10.0-patch1+docs-4build1 [95.5 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-0ubuntu2 [173 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main s390x libjpeg-turbo8-dev s390x 1.5.2-0ubuntu6 [210 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main s390x libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:131 http://ftpmaster.internal/ubuntu cosmic/main s390x libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:132 http://ftpmaster.internal/ubuntu cosmic/universe s390x libaec-dev s390x 1.0.2-1 [39.2 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic/universe s390x libhdf5-dev s390x 1.10.0-patch1+docs-4build1 [2342 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/main s390x libjsoncpp-dev s390x 1.7.4-3 [82.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 65.4 MB in 2s (29.0 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 12443 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-1_s390x.deb ... Unpacking libbsd0:s390x (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.3-10_s390x.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../003-libpipeline1_1.5.0-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.8.3-2_s390x.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../005-libexpat1_2.2.5-3_s390x.deb ... Unpacking libexpat1:s390x (2.2.5-3) ... Selecting previously unselected package libfreetype6:s390x. Preparing to unpack .../006-libfreetype6_2.8.1-2ubuntu2_s390x.deb ... Unpacking libfreetype6:s390x (2.8.1-2ubuntu2) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../008-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../009-fontconfig-config_2.12.6-0ubuntu2_all.deb ... Unpacking fontconfig-config (2.12.6-0ubuntu2) ... Selecting previously unselected package libfontconfig1:s390x. Preparing to unpack .../010-libfontconfig1_2.12.6-0ubuntu2_s390x.deb ... Unpacking libfontconfig1:s390x (2.12.6-0ubuntu2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../011-fontconfig_2.12.6-0ubuntu2_s390x.deb ... Unpacking fontconfig (2.12.6-0ubuntu2) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../012-libjpeg-turbo8_1.5.2-0ubuntu6_s390x.deb ... Unpacking libjpeg-turbo8:s390x (1.5.2-0ubuntu6) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../013-libmagic-mgc_1%3a5.33-3_s390x.deb ... Unpacking libmagic-mgc (1:5.33-3) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../014-libmagic1_1%3a5.33-3_s390x.deb ... Unpacking libmagic1:s390x (1:5.33-3) ... Selecting previously unselected package file. Preparing to unpack .../015-file_1%3a5.33-3_s390x.deb ... Unpacking file (1:5.33-3) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../016-libelf1_0.170-0.5_s390x.deb ... Unpacking libelf1:s390x (0.170-0.5) ... Selecting previously unselected package libfribidi0:s390x. Preparing to unpack .../017-libfribidi0_0.19.7-3_s390x.deb ... Unpacking libfribidi0:s390x (0.19.7-3) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../018-libglib2.0-0_2.56.1-2ubuntu1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.56.1-2ubuntu1) ... Selecting previously unselected package libicu60:s390x. Preparing to unpack .../019-libicu60_60.2-6ubuntu1_s390x.deb ... Unpacking libicu60:s390x (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../020-libxml2_2.9.4+dfsg1-7build1_s390x.deb ... Unpacking libxml2:s390x (2.9.4+dfsg1-7build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../021-gettext-base_0.19.8.1-6build1_s390x.deb ... Unpacking gettext-base (0.19.8.1-6build1) ... Selecting previously unselected package libedit2:s390x. Preparing to unpack .../022-libedit2_3.1-20180525-1_s390x.deb ... Unpacking libedit2:s390x (3.1-20180525-1) ... Selecting previously unselected package libkrb5support0:s390x. Preparing to unpack .../023-libkrb5support0_1.16-2build1_s390x.deb ... Unpacking libkrb5support0:s390x (1.16-2build1) ... Selecting previously unselected package libk5crypto3:s390x. Preparing to unpack .../024-libk5crypto3_1.16-2build1_s390x.deb ... Unpacking libk5crypto3:s390x (1.16-2build1) ... Selecting previously unselected package libkeyutils1:s390x. Preparing to unpack .../025-libkeyutils1_1.5.9-9.2ubuntu3_s390x.deb ... Unpacking libkeyutils1:s390x (1.5.9-9.2ubuntu3) ... Selecting previously unselected package libkrb5-3:s390x. Preparing to unpack .../026-libkrb5-3_1.16-2build1_s390x.deb ... Unpacking libkrb5-3:s390x (1.16-2build1) ... Selecting previously unselected package libgssapi-krb5-2:s390x. Preparing to unpack .../027-libgssapi-krb5-2_1.16-2build1_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.16-2build1) ... Selecting previously unselected package libpsl5:s390x. Preparing to unpack .../028-libpsl5_0.20.2-1_s390x.deb ... Unpacking libpsl5:s390x (0.20.2-1) ... Selecting previously unselected package libxau6:s390x. Preparing to unpack .../029-libxau6_1%3a1.0.8-1_s390x.deb ... Unpacking libxau6:s390x (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:s390x. Preparing to unpack .../030-libxdmcp6_1%3a1.1.2-3_s390x.deb ... Unpacking libxdmcp6:s390x (1:1.1.2-3) ... Selecting previously unselected package libxcb1:s390x. Preparing to unpack .../031-libxcb1_1.13-1_s390x.deb ... Unpacking libxcb1:s390x (1.13-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../032-libx11-data_2%3a1.6.5-1_all.deb ... Unpacking libx11-data (2:1.6.5-1) ... Selecting previously unselected package libx11-6:s390x. Preparing to unpack .../033-libx11-6_2%3a1.6.5-1_s390x.deb ... Unpacking libx11-6:s390x (2:1.6.5-1) ... Selecting previously unselected package libxext6:s390x. Preparing to unpack .../034-libxext6_2%3a1.3.3-1_s390x.deb ... Unpacking libxext6:s390x (2:1.3.3-1) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../035-libsigsegv2_2.12-2_s390x.deb ... Unpacking libsigsegv2:s390x (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../036-m4_1.4.18-1_s390x.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../037-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../038-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../039-automake_1%3a1.15.1-3ubuntu2_all.deb ... Unpacking automake (1:1.15.1-3ubuntu2) ... Selecting previously unselected package autopoint. Preparing to unpack .../040-autopoint_0.19.8.1-6build1_all.deb ... Unpacking autopoint (0.19.8.1-6build1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../041-cmake-data_3.11.2-1_all.deb ... Unpacking cmake-data (3.11.2-1) ... Selecting previously unselected package liblzo2-2:s390x. Preparing to unpack .../042-liblzo2-2_2.10-0.1_s390x.deb ... Unpacking liblzo2-2:s390x (2.10-0.1) ... Selecting previously unselected package libarchive13:s390x. Preparing to unpack .../043-libarchive13_3.2.2-4_s390x.deb ... Unpacking libarchive13:s390x (3.2.2-4) ... Selecting previously unselected package libroken18-heimdal:s390x. Preparing to unpack .../044-libroken18-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libroken18-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libasn1-8-heimdal:s390x. Preparing to unpack .../045-libasn1-8-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libasn1-8-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libheimbase1-heimdal:s390x. Preparing to unpack .../046-libheimbase1-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libheimbase1-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libhcrypto4-heimdal:s390x. Preparing to unpack .../047-libhcrypto4-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libhcrypto4-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libwind0-heimdal:s390x. Preparing to unpack .../048-libwind0-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libwind0-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libhx509-5-heimdal:s390x. Preparing to unpack .../049-libhx509-5-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libhx509-5-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libkrb5-26-heimdal:s390x. Preparing to unpack .../050-libkrb5-26-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libkrb5-26-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libheimntlm0-heimdal:s390x. Preparing to unpack .../051-libheimntlm0-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libheimntlm0-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libgssapi3-heimdal:s390x. Preparing to unpack .../052-libgssapi3-heimdal_7.5.0+dfsg-2_s390x.deb ... Unpacking libgssapi3-heimdal:s390x (7.5.0+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../053-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../054-libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../055-libldap-common_2.4.46+dfsg-5ubuntu1_all.deb ... Unpacking libldap-common (2.4.46+dfsg-5ubuntu1) ... Selecting previously unselected package libldap-2.4-2:s390x. Preparing to unpack .../056-libldap-2.4-2_2.4.46+dfsg-5ubuntu1_s390x.deb ... Unpacking libldap-2.4-2:s390x (2.4.46+dfsg-5ubuntu1) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../057-libnghttp2-14_1.32.0-1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.32.0-1) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../058-librtmp1_2.4+20151223.gitfa8646d.1-2_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libcurl4:s390x. Preparing to unpack .../059-libcurl4_7.60.0-2ubuntu1_s390x.deb ... Unpacking libcurl4:s390x (7.60.0-2ubuntu1) ... Selecting previously unselected package libjsoncpp1:s390x. Preparing to unpack .../060-libjsoncpp1_1.7.4-3_s390x.deb ... Unpacking libjsoncpp1:s390x (1.7.4-3) ... Selecting previously unselected package librhash0:s390x. Preparing to unpack .../061-librhash0_1.3.6-2_s390x.deb ... Unpacking librhash0:s390x (1.3.6-2) ... Selecting previously unselected package libuv1:s390x. Preparing to unpack .../062-libuv1_1.21.0-2_s390x.deb ... Unpacking libuv1:s390x (1.21.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../063-cmake_3.11.2-1_s390x.deb ... Unpacking cmake (3.11.2-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../064-d-shlibs_0.82_all.deb ... Unpacking d-shlibs (0.82) ... Selecting previously unselected package libtool. Preparing to unpack .../065-libtool_2.4.6-2.1_all.deb ... Unpacking libtool (2.4.6-2.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../066-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../067-libarchive-zip-perl_1.60-1_all.deb ... Unpacking libarchive-zip-perl (1.60-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../068-libfile-stripnondeterminism-perl_0.042-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.042-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../069-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../070-dh-strip-nondeterminism_0.042-1_all.deb ... Unpacking dh-strip-nondeterminism (0.042-1) ... Selecting previously unselected package dwz. Preparing to unpack .../071-dwz_0.12-2_s390x.deb ... Unpacking dwz (0.12-2) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../072-libcroco3_0.6.12-2_s390x.deb ... Unpacking libcroco3:s390x (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../073-gettext_0.19.8.1-6build1_s390x.deb ... Unpacking gettext (0.19.8.1-6build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../074-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../075-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../076-debhelper_11.3.2ubuntu1_all.deb ... Unpacking debhelper (11.3.2ubuntu1) ... Selecting previously unselected package libllvm6.0:s390x. Preparing to unpack .../077-libllvm6.0_1%3a6.0.1-2ubuntu1_s390x.deb ... Unpacking libllvm6.0:s390x (1:6.0.1-2ubuntu1) ... Selecting previously unselected package libclang1-6.0:s390x. Preparing to unpack .../078-libclang1-6.0_1%3a6.0.1-2ubuntu1_s390x.deb ... Unpacking libclang1-6.0:s390x (1:6.0.1-2ubuntu1) ... Selecting previously unselected package libxapian30:s390x. Preparing to unpack .../079-libxapian30_1.4.6-1_s390x.deb ... Unpacking libxapian30:s390x (1.4.6-1) ... Selecting previously unselected package doxygen. Preparing to unpack .../080-doxygen_1.8.13-10_s390x.deb ... Unpacking doxygen (1.8.13-10) ... Selecting previously unselected package libann0. Preparing to unpack .../081-libann0_1.1.2+doc-7_s390x.deb ... Unpacking libann0 (1.1.2+doc-7) ... Selecting previously unselected package libcdt5. Preparing to unpack .../082-libcdt5_2.40.1-3_s390x.deb ... Unpacking libcdt5 (2.40.1-3) ... Selecting previously unselected package libcgraph6. Preparing to unpack .../083-libcgraph6_2.40.1-3_s390x.deb ... Unpacking libcgraph6 (2.40.1-3) ... Selecting previously unselected package libjpeg8:s390x. Preparing to unpack .../084-libjpeg8_8c-2ubuntu8_s390x.deb ... Unpacking libjpeg8:s390x (8c-2ubuntu8) ... Selecting previously unselected package libjbig0:s390x. Preparing to unpack .../085-libjbig0_2.1-3.1build1_s390x.deb ... Unpacking libjbig0:s390x (2.1-3.1build1) ... Selecting previously unselected package libtiff5:s390x. Preparing to unpack .../086-libtiff5_4.0.9-6_s390x.deb ... Unpacking libtiff5:s390x (4.0.9-6) ... Selecting previously unselected package libwebp6:s390x. Preparing to unpack .../087-libwebp6_0.6.1-2_s390x.deb ... Unpacking libwebp6:s390x (0.6.1-2) ... Selecting previously unselected package libxpm4:s390x. Preparing to unpack .../088-libxpm4_1%3a3.5.12-1_s390x.deb ... Unpacking libxpm4:s390x (1:3.5.12-1) ... Selecting previously unselected package libgd3:s390x. Preparing to unpack .../089-libgd3_2.2.5-4_s390x.deb ... Unpacking libgd3:s390x (2.2.5-4) ... Selecting previously unselected package libgts-0.7-5:s390x. Preparing to unpack .../090-libgts-0.7-5_0.7.6+darcs121130-4_s390x.deb ... Unpacking libgts-0.7-5:s390x (0.7.6+darcs121130-4) ... Selecting previously unselected package libpixman-1-0:s390x. Preparing to unpack .../091-libpixman-1-0_0.34.0-2_s390x.deb ... Unpacking libpixman-1-0:s390x (0.34.0-2) ... Selecting previously unselected package libxcb-render0:s390x. Preparing to unpack .../092-libxcb-render0_1.13-1_s390x.deb ... Unpacking libxcb-render0:s390x (1.13-1) ... Selecting previously unselected package libxcb-shm0:s390x. Preparing to unpack .../093-libxcb-shm0_1.13-1_s390x.deb ... Unpacking libxcb-shm0:s390x (1.13-1) ... Selecting previously unselected package libxrender1:s390x. Preparing to unpack .../094-libxrender1_1%3a0.9.10-1_s390x.deb ... Unpacking libxrender1:s390x (1:0.9.10-1) ... Selecting previously unselected package libcairo2:s390x. Preparing to unpack .../095-libcairo2_1.15.10-3_s390x.deb ... Unpacking libcairo2:s390x (1.15.10-3) ... Selecting previously unselected package libltdl7:s390x. Preparing to unpack .../096-libltdl7_2.4.6-2.1_s390x.deb ... Unpacking libltdl7:s390x (2.4.6-2.1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../097-libthai-data_0.1.27-2_all.deb ... Unpacking libthai-data (0.1.27-2) ... Selecting previously unselected package libdatrie1:s390x. Preparing to unpack .../098-libdatrie1_0.2.12-1_s390x.deb ... Unpacking libdatrie1:s390x (0.2.12-1) ... Selecting previously unselected package libthai0:s390x. Preparing to unpack .../099-libthai0_0.1.27-2_s390x.deb ... Unpacking libthai0:s390x (0.1.27-2) ... Selecting previously unselected package libpango-1.0-0:s390x. Preparing to unpack .../100-libpango-1.0-0_1.42.1-2_s390x.deb ... Unpacking libpango-1.0-0:s390x (1.42.1-2) ... Selecting previously unselected package libgraphite2-3:s390x. Preparing to unpack .../101-libgraphite2-3_1.3.11-2_s390x.deb ... Unpacking libgraphite2-3:s390x (1.3.11-2) ... Selecting previously unselected package libharfbuzz0b:s390x. Preparing to unpack .../102-libharfbuzz0b_1.8.2-2_s390x.deb ... Unpacking libharfbuzz0b:s390x (1.8.2-2) ... Selecting previously unselected package libpangoft2-1.0-0:s390x. Preparing to unpack .../103-libpangoft2-1.0-0_1.42.1-2_s390x.deb ... Unpacking libpangoft2-1.0-0:s390x (1.42.1-2) ... Selecting previously unselected package libpangocairo-1.0-0:s390x. Preparing to unpack .../104-libpangocairo-1.0-0_1.42.1-2_s390x.deb ... Unpacking libpangocairo-1.0-0:s390x (1.42.1-2) ... Selecting previously unselected package libpathplan4. Preparing to unpack .../105-libpathplan4_2.40.1-3_s390x.deb ... Unpacking libpathplan4 (2.40.1-3) ... Selecting previously unselected package libgvc6. Preparing to unpack .../106-libgvc6_2.40.1-3_s390x.deb ... Unpacking libgvc6 (2.40.1-3) ... Selecting previously unselected package libgvpr2. Preparing to unpack .../107-libgvpr2_2.40.1-3_s390x.deb ... Unpacking libgvpr2 (2.40.1-3) ... Selecting previously unselected package liblab-gamut1. Preparing to unpack .../108-liblab-gamut1_2.40.1-3_s390x.deb ... Unpacking liblab-gamut1 (2.40.1-3) ... Selecting previously unselected package x11-common. Preparing to unpack .../109-x11-common_1%3a7.7+19ubuntu8_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu8) ... Selecting previously unselected package libice6:s390x. Preparing to unpack .../110-libice6_2%3a1.0.9-2_s390x.deb ... Unpacking libice6:s390x (2:1.0.9-2) ... Selecting previously unselected package libsm6:s390x. Preparing to unpack .../111-libsm6_2%3a1.2.2-1_s390x.deb ... Unpacking libsm6:s390x (2:1.2.2-1) ... Selecting previously unselected package libxt6:s390x. Preparing to unpack .../112-libxt6_1%3a1.1.5-1_s390x.deb ... Unpacking libxt6:s390x (1:1.1.5-1) ... Selecting previously unselected package libxmu6:s390x. Preparing to unpack .../113-libxmu6_2%3a1.1.2-2_s390x.deb ... Unpacking libxmu6:s390x (2:1.1.2-2) ... Selecting previously unselected package libxaw7:s390x. Preparing to unpack .../114-libxaw7_2%3a1.0.13-1_s390x.deb ... Unpacking libxaw7:s390x (2:1.0.13-1) ... Selecting previously unselected package graphviz. Preparing to unpack .../115-graphviz_2.40.1-3_s390x.deb ... Unpacking graphviz (2.40.1-3) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../116-hdf5-helpers_1.10.0-patch1+docs-4build1_s390x.deb ... Unpacking hdf5-helpers (1.10.0-patch1+docs-4build1) ... Selecting previously unselected package libaec0:s390x. Preparing to unpack .../117-libaec0_1.0.2-1_s390x.deb ... Unpacking libaec0:s390x (1.0.2-1) ... Selecting previously unselected package libboost1.65-dev:s390x. Preparing to unpack .../118-libboost1.65-dev_1.65.1+dfsg-0ubuntu9_s390x.deb ... Unpacking libboost1.65-dev:s390x (1.65.1+dfsg-0ubuntu9) ... Selecting previously unselected package libboost-dev:s390x. Preparing to unpack .../119-libboost-dev_1.65.1.0ubuntu1_s390x.deb ... Unpacking libboost-dev:s390x (1.65.1.0ubuntu1) ... Selecting previously unselected package libcppunit-1.14-0:s390x. Preparing to unpack .../120-libcppunit-1.14-0_1.14.0-3_s390x.deb ... Unpacking libcppunit-1.14-0:s390x (1.14.0-3) ... Selecting previously unselected package libcppunit-dev. Preparing to unpack .../121-libcppunit-dev_1.14.0-3_s390x.deb ... Unpacking libcppunit-dev (1.14.0-3) ... Selecting previously unselected package libgfortran4:s390x. Preparing to unpack .../122-libgfortran4_7.3.0-24ubuntu1_s390x.deb ... Unpacking libgfortran4:s390x (7.3.0-24ubuntu1) ... Selecting previously unselected package libsz2:s390x. Preparing to unpack .../123-libsz2_1.0.2-1_s390x.deb ... Unpacking libsz2:s390x (1.0.2-1) ... Selecting previously unselected package libhdf5-100:s390x. Preparing to unpack .../124-libhdf5-100_1.10.0-patch1+docs-4build1_s390x.deb ... Unpacking libhdf5-100:s390x (1.10.0-patch1+docs-4build1) ... Selecting previously unselected package libhdf5-cpp-100:s390x. Preparing to unpack .../125-libhdf5-cpp-100_1.10.0-patch1+docs-4build1_s390x.deb ... Unpacking libhdf5-cpp-100:s390x (1.10.0-patch1+docs-4build1) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../126-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package libjpeg-turbo8-dev:s390x. Preparing to unpack .../127-libjpeg-turbo8-dev_1.5.2-0ubuntu6_s390x.deb ... Unpacking libjpeg-turbo8-dev:s390x (1.5.2-0ubuntu6) ... Selecting previously unselected package libjpeg8-dev:s390x. Preparing to unpack .../128-libjpeg8-dev_8c-2ubuntu8_s390x.deb ... Unpacking libjpeg8-dev:s390x (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:s390x. Preparing to unpack .../129-libjpeg-dev_8c-2ubuntu8_s390x.deb ... Unpacking libjpeg-dev:s390x (8c-2ubuntu8) ... Selecting previously unselected package libaec-dev:s390x. Preparing to unpack .../130-libaec-dev_1.0.2-1_s390x.deb ... Unpacking libaec-dev:s390x (1.0.2-1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../131-libhdf5-dev_1.10.0-patch1+docs-4build1_s390x.deb ... Unpacking libhdf5-dev (1.10.0-patch1+docs-4build1) ... Selecting previously unselected package libjsoncpp-dev:s390x. Preparing to unpack .../132-libjsoncpp-dev_1.7.4-3_s390x.deb ... Unpacking libjsoncpp-dev:s390x (1.7.4-3) ... Selecting previously unselected package sbuild-build-depends-gatb-core-dummy. Preparing to unpack .../133-sbuild-build-depends-gatb-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-gatb-core-dummy (0.invalid.0) ... Setting up libedit2:s390x (3.1-20180525-1) ... Setting up libcppunit-1.14-0:s390x (1.14.0-3) ... Setting up libxapian30:s390x (1.4.6-1) ... Setting up libpathplan4 (2.40.1-3) ... Setting up libaec0:s390x (1.0.2-1) ... Setting up libexpat1:s390x (2.2.5-3) ... Setting up libicu60:s390x (60.2-6ubuntu1) ... Setting up liblab-gamut1 (2.40.1-3) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libnghttp2-14:s390x (1.32.0-1) ... Setting up libgfortran4:s390x (7.3.0-24ubuntu1) ... Setting up libllvm6.0:s390x (1:6.0.1-2ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:s390x (2.1-3.1build1) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libuv1:s390x (1.21.0-2) ... Setting up libpsl5:s390x (0.20.2-1) ... Setting up libelf1:s390x (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:s390x (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up libcppunit-dev (1.14.0-3) ... Setting up libsasl2-modules-db:s390x (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:s390x (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libclang1-6.0:s390x (1:6.0.1-2ubuntu1) ... Setting up d-shlibs (0.82) ... Setting up libdatrie1:s390x (0.2.12-1) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up cmake-data (3.11.2-1) ... Setting up libjpeg-turbo8:s390x (1.5.2-0ubuntu6) ... Setting up libpipeline1:s390x (1.5.0-1) ... Setting up libroken18-heimdal:s390x (7.5.0+dfsg-2) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:s390x (0.9.1-1) ... Setting up libkrb5support0:s390x (1.16-2build1) ... Setting up ucf (3.0038) ... Setting up libxml2:s390x (2.9.4+dfsg1-7build1) ... Setting up libfreetype6:s390x (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:s390x (1:5.33-3) ... Setting up libgraphite2-3:s390x (1.3.11-2) ... Setting up librhash0:s390x (1.3.6-2) ... Setting up libcroco3:s390x (0.6.12-2) ... Setting up libpixman-1-0:s390x (0.34.0-2) ... Setting up libjpeg-turbo8-dev:s390x (1.5.2-0ubuntu6) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:s390x (7.5.0+dfsg-2) ... Processing triggers for systemd (238-5ubuntu2) ... Setting up libltdl7:s390x (2.4.6-2.1) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libfribidi0:s390x (0.19.7-3) ... Setting up libthai-data (0.1.27-2) ... Setting up libxdmcp6:s390x (1:1.1.2-3) ... Setting up libkeyutils1:s390x (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libboost1.65-dev:s390x (1.65.1+dfsg-0ubuntu9) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4build1) ... Setting up libcdt5 (2.40.1-3) ... Setting up libx11-data (2:1.6.5-1) ... Setting up libxau6:s390x (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up liblzo2-2:s390x (2.10-0.1) ... Setting up libcgraph6 (2.40.1-3) ... Setting up libsz2:s390x (1.0.2-1) ... Setting up libwebp6:s390x (0.6.1-2) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libjsoncpp1:s390x (1.7.4-3) ... Setting up libjsoncpp-dev:s390x (1.7.4-3) ... Setting up libgts-0.7-5:s390x (0.7.6+darcs121130-4) ... Setting up libk5crypto3:s390x (1.16-2build1) ... Setting up fontconfig-config (2.12.6-0ubuntu2) ... Setting up libhdf5-100:s390x (1.10.0-patch1+docs-4build1) ... Setting up libwind0-heimdal:s390x (7.5.0+dfsg-2) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libarchive13:s390x (3.2.2-4) ... Setting up libgvpr2 (2.40.1-3) ... Setting up libasn1-8-heimdal:s390x (7.5.0+dfsg-2) ... Setting up libhcrypto4-heimdal:s390x (7.5.0+dfsg-2) ... Setting up doxygen (1.8.13-10) ... Setting up libaec-dev:s390x (1.0.2-1) ... Setting up libharfbuzz0b:s390x (1.8.2-2) ... Setting up libtiff5:s390x (4.0.9-6) ... Setting up autoconf (2.69-11) ... Setting up libthai0:s390x (0.1.27-2) ... Setting up file (1:5.33-3) ... Setting up libhx509-5-heimdal:s390x (7.5.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:s390x (2:1.0.9-2) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:s390x (1.16-2build1) ... Setting up libkrb5-26-heimdal:s390x (7.5.0+dfsg-2) ... Setting up libboost-dev:s390x (1.65.1.0ubuntu1) ... Setting up libxcb1:s390x (1.13-1) ... Setting up libheimntlm0-heimdal:s390x (7.5.0+dfsg-2) ... Setting up libtool (2.4.6-2.1) ... Setting up libfontconfig1:s390x (2.12.6-0ubuntu2) ... Setting up libsm6:s390x (2:1.2.2-1) ... Setting up libhdf5-cpp-100:s390x (1.10.0-patch1+docs-4build1) ... Setting up libxcb-render0:s390x (1.13-1) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:s390x (2:1.6.5-1) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4build1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libgssapi-krb5-2:s390x (1.16-2build1) ... Setting up libxcb-shm0:s390x (1.13-1) ... Setting up libxpm4:s390x (1:3.5.12-1) ... Setting up libxt6:s390x (1:1.1.5-1) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up libgssapi3-heimdal:s390x (7.5.0+dfsg-2) ... Setting up fontconfig (2.12.6-0ubuntu2) ... Regenerating fonts cache... done. Setting up libxext6:s390x (2:1.3.3-1) ... Setting up libgd3:s390x (2.2.5-4) ... Setting up libxmu6:s390x (2:1.1.2-2) ... Setting up libldap-2.4-2:s390x (2.4.46+dfsg-5ubuntu1) ... Setting up libpango-1.0-0:s390x (1.42.1-2) ... Setting up libxaw7:s390x (2:1.0.13-1) ... Setting up libcairo2:s390x (1.15.10-3) ... Setting up libcurl4:s390x (7.60.0-2ubuntu1) ... Setting up libpangoft2-1.0-0:s390x (1.42.1-2) ... Setting up cmake (3.11.2-1) ... Setting up libpangocairo-1.0-0:s390x (1.42.1-2) ... Setting up libgvc6 (2.40.1-3) ... Setting up graphviz (2.40.1-3) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-gatb-core-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for systemd (238-5ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-130-generic s390x (s390x) Toolchain package versions: binutils_2.30-22ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-24ubuntu1 gcc-7_7.3.0-24ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-24ubuntu1 libstdc++6_8.1.0-9ubuntu1 linux-libc-dev_4.17.0-4.5 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-22ubuntu1 binutils-common_2.30-22ubuntu1 binutils-s390x-linux-gnu_2.30-22ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 cmake_3.11.2-1 cmake-data_3.11.2-1 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-24ubuntu1 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 doxygen_1.8.13-10 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0ubuntu2 fontconfig-config_2.12.6-0ubuntu2 fonts-dejavu-core_2.37-1 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-24ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-24ubuntu1 gcc-7-base_7.3.0-24ubuntu1 gcc-8-base_8.1.0-9ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 graphviz_2.40.1-3 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hdf5-helpers_1.10.0-patch1+docs-4build1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libann0_1.1.2+doc-7 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-4 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-24ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2 libassuan0_2.5.1-2 libatomic1_8.1.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.30-22ubuntu1 libblkid1_2.32-0.1ubuntu1 libboost-dev_1.65.1.0ubuntu1 libboost1.65-dev_1.65.1+dfsg-0ubuntu9 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcairo2_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-9ubuntu1 libcdt5_2.40.1-3 libcgraph6_2.40.1-3 libclang1-6.0_1:6.0.1-2ubuntu1 libcom-err2_1.44.2-1 libcomerr2_1.44.2-1 libcppunit-1.14-0_1.14.0-3 libcppunit-dev_1.14.0-3 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu2 libcurl4_7.60.0-2ubuntu1 libdatrie1_0.2.12-1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfontconfig1_2.12.6-0ubuntu2 libfreetype6_2.8.1-2ubuntu2 libfribidi0_0.19.7-3 libgcc-7-dev_7.3.0-24ubuntu1 libgcc1_1:8.1.0-9ubuntu1 libgcrypt20_1.8.2-2ubuntu1 libgd3_2.2.5-4 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran4_7.3.0-24ubuntu1 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-9ubuntu1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-2 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.40.1-3 libgvpr2_2.40.1-3 libharfbuzz0b_1.8.2-2 libhcrypto4-heimdal_7.5.0+dfsg-2 libhdf5-100_1.10.0-patch1+docs-4build1 libhdf5-cpp-100_1.10.0-patch1+docs-4build1 libhdf5-dev_1.10.0-patch1+docs-4build1 libheimbase1-heimdal_7.5.0+dfsg-2 libheimntlm0-heimdal_7.5.0+dfsg-2 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-2 libice6_2:1.0.9-2 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-9ubuntu1 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.5.2-0ubuntu6 libjpeg-turbo8-dev_1.5.2-0ubuntu6 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu3 libkmod2_25-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-2 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 liblab-gamut1_2.40.1-3 libldap-2.4-2_2.4.46+dfsg-5ubuntu1 libldap-common_2.4.46+dfsg-5ubuntu1 libllvm6.0_1:6.0.1-2ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.32.0-1 libnpth0_1.5-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpango-1.0-0_1.42.1-2 libpangocairo-1.0-0_1.42.1-2 libpangoft2-1.0-0_1.42.1-2 libpathplan4_2.40.1-3 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-1 libreadline7_7.0-5 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-24ubuntu1 libstdc++6_8.1.0-9ubuntu1 libsystemd0_238-5ubuntu2 libsz2_1.0.2-1 libtasn1-6_4.13-3 libthai-data_0.1.27-2 libthai0_0.1.27-2 libtiff5_4.0.9-6 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1 libubsan0_7.3.0-24ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu1 libuv1_1.21.0-2 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libxapian30_1.4.6-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.13-1 libxcb-shm0_1.13-1 libxcb1_1.13-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxml2_2.9.4+dfsg1-7build1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-4.5 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkgbinarymangler_139 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gatb-core-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 ucf_3.0038 util-linux_2.32-0.1ubuntu1 x11-common_1:7.7+19ubuntu8 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jul 6 10:42:50 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gatb-core_1.4.1+dfsg-2.dsc dpkg-source: info: extracting gatb-core in gatb-core-1.4.1+dfsg dpkg-source: info: unpacking gatb-core_1.4.1+dfsg.orig.tar.xz dpkg-source: info: unpacking gatb-core_1.4.1+dfsg-2.debian.tar.xz dpkg-source: info: applying use_debian_packaged_hdf5.patch dpkg-source: info: applying fix_hdf5_includes.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying fix_install_location.patch dpkg-source: info: applying set_soversion.patch dpkg-source: info: applying dynamic_linking_of_tools.patch dpkg-source: info: applying multiarch.patch dpkg-source: info: applying spelling.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15096089 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15096089 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15096089 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build gatb-core-1.4.1+dfsg dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --sourcedirectory=gatb-core dh_auto_clean -O--sourcedirectory=gatb-core dh_clean -O--sourcedirectory=gatb-core debian/rules build-arch dh build-arch --sourcedirectory=gatb-core dh_update_autotools_config -a -O--sourcedirectory=gatb-core dh_autoreconf -a -O--sourcedirectory=gatb-core dh_auto_configure -a -O--sourcedirectory=gatb-core cd obj-s390x-linux-gnu && cmake ../gatb-core -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- CppUnit: found headers (in /usr/include) but not the static library (/usr/include/../lib/libcppunit.a) -- CppUnit FOUND (/usr/include) -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed -- Check size of __uint128_t -- Check size of __uint128_t - done -- Options: -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/s390x-linux-gnu/libpthread.so;/usr/lib/s390x-linux-gnu/libsz.so;/usr/lib/s390x-linux-gnu/libz.so;/usr/lib/s390x-linux-gnu/libdl.so;/usr/lib/s390x-linux-gnu/libm.so (found version "1.10.0.1") -- HDF5_LIBRARIES="/usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so/usr/lib/s390x-linux-gnu/libpthread.so/usr/lib/s390x-linux-gnu/libsz.so/usr/lib/s390x-linux-gnu/libz.so/usr/lib/s390x-linux-gnu/libdl.so/usr/lib/s390x-linux-gnu/libm.so" -- OPTIMIZED KMER SIZES INTERVALS ARE 32 64 96 128 <-- max supported kmer size without recompilation CMake Warning (dev) at CMakeLists.txt:238 (set): Cannot set "gatb-core-klist": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------- GATB TESTS ---------- -- ---------- GATB TOOLS ---------- DYNAMIC BINARIES for dbgh5 DYNAMIC BINARIES for dbginfo DYNAMIC BINARIES for leon -- Found HDF5: /usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/s390x-linux-gnu/libpthread.so;/usr/lib/s390x-linux-gnu/libsz.so;/usr/lib/s390x-linux-gnu/libz.so;/usr/lib/s390x-linux-gnu/libdl.so;/usr/lib/s390x-linux-gnu/libm.so (found version "1.10.0.1") found components: C CMake Warning (dev) at CMakeLists.txt:265 (set): Cannot set "gatb-core-flags": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:266 (set): Cannot set "gatb-core-includes": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:267 (set): Cannot set "gatb-core-libraries": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:268 (set): Cannot set "gatb-core-cmake": current scope has no parent. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu dh_auto_build -a -O--sourcedirectory=gatb-core cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -H/<>/gatb-core-1.4.1+dfsg/gatb-core -B/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/CMakeFiles /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/src /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/src /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= Scanning dependencies of target thirdparty_copy make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/json cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/ cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty/json/json.hpp /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/json/ make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 0%] Built target thirdparty_copy Scanning dependencies of target gatbcore-dynamic make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build Scanning dependencies of target gatbcore-static make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp [ 0%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp [ 0%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp [ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (&value, sizeof(value), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp:23: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function ‘bool gatb::core::bank::impl::checkMagic(FILE*)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (&value, sizeof(value), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In member function ‘virtual void gatb::core::bank::impl::BankBinary::Iterator::next()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp [ 9%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/logging.cpp /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp [ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ [ 11%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 13%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 13%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp [ 14%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp [ 15%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 16%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp [ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp [ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 17%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp [ 19%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 19%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 20%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 21%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 22%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/LinearCounter.cpp [ 25%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp [ 26%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/ModelData.cpp [ 27%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartiInfo.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 28%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp [ 29%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/RepartitionAlgorithm.cpp [ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp [ 31%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp [ 32%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/System.cpp [ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/System.cpp [ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 34%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor ‘gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] int ret = pthread_attr_init ( &tattr ) ; ^~~ [ 35%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o [ 36%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 37%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 37%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp: In constructor ‘gatb::core::system::impl::ThreadLinux::ThreadLinux(void* (*)(void*), void*)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/ThreadLinux.cpp:51:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] int ret = pthread_attr_init ( &tattr ) ; ^~~ [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp [ 38%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp [ 38%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeNumeric()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:707:32: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] snprintf(temp,200,"%llu",value); ^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeDelta()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:727:32: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] snprintf(temp,200,"%llu",value); ^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeDelta2()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:746:32: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] snprintf(temp,200,"%llu",value); ^ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function ‘kmer_type DnaDecoder::extendAnchor(kmer_type, int, bool)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript is above array bounds [-Warray-bounds] return bin2ntTab[nt]; ~~~~~~~~~~~~^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript is above array bounds [-Warray-bounds] return bin2ntTab[nt]; ~~~~~~~~~~~~^ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.hpp:27:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/DnaCoder.cpp:21: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function ‘kmer_type DnaDecoder::extendAnchor(kmer_type, int, bool)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript is above array bounds [-Warray-bounds] return bin2ntTab[nt]; ~~~~~~~~~~~~^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript is above array bounds [-Warray-bounds] return bin2ntTab[nt]; ~~~~~~~~~~~~^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp: In member function ‘void DnaDecoder::decodeAnchorRead()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript is above array bounds [-Warray-bounds] return bin2ntTab[nt]; ~~~~~~~~~~~~^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript is above array bounds [-Warray-bounds] return bin2ntTab[nt]; ~~~~~~~~~~~~^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript is above array bounds [-Warray-bounds] return bin2ntTab[nt]; ~~~~~~~~~~~~^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:205:23: warning: array subscript is above array bounds [-Warray-bounds] return bin2ntTab[nt]; ~~~~~~~~~~~~^ [ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 40%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 40%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:21: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeNumeric()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:707:32: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] snprintf(temp,200,"%llu",value); ^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeDelta()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:727:32: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] snprintf(temp,200,"%llu",value); ^ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp: In member function ‘void HeaderDecoder::decodeDelta2()’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp:746:32: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘u_int64_t {aka long unsigned int}’ [-Wformat=] snprintf(temp,200,"%llu",value); ^ [ 41%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/RangeCoder.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 42%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 43%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::tools::math::NativeInt64]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::tools::math::NativeInt64]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::tools::math::NativeInt8]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::tools::math::NativeInt8]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp [ 44%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 45%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Progress.cpp [ 46%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 47%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Property.cpp In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/impl/System.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.cpp:23: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::tools::math::NativeInt64]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::tools::math::NativeInt64]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::tools::math::NativeInt8]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::tools::math::NativeInt8]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 47%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 48%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 50%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 50%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:13:17: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp [ 52%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:13:17: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp [ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp:13:17: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:13:17: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp:13:17: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:13:17: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 55%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp [ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp:13:17: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp:20:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp:13:17: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:3:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:747:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, bool) [with long unsigned int SPAN = 128; std::__cxx11::string = std::__cxx11::basic_string]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:28:9: required from here /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:839:10: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ totalsizeBitset, 100*(float)totalsizeBitset/totalsize); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:3:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:747:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, bool) [with long unsigned int SPAN = 128; std::__cxx11::string = std::__cxx11::basic_string]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:28:9: required from here /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:839:10: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ totalsizeBitset, 100*(float)totalsizeBitset/totalsize); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp [ 57%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:3:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:3:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:747:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, bool) [with long unsigned int SPAN = 32; std::__cxx11::string = std::__cxx11::basic_string]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:28:9: required from here /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:839:10: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ totalsizeBitset, 100*(float)totalsizeBitset/totalsize); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:747:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, bool) [with long unsigned int SPAN = 32; std::__cxx11::string = std::__cxx11::basic_string]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:28:9: required from here /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:839:10: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ totalsizeBitset, 100*(float)totalsizeBitset/totalsize); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:41, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:41, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:41, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:41, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:3:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:3:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:747:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, bool) [with long unsigned int SPAN = 64; std::__cxx11::string = std::__cxx11::basic_string]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:28:9: required from here /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:839:10: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ totalsizeBitset, 100*(float)totalsizeBitset/totalsize); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:747:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, bool) [with long unsigned int SPAN = 64; std::__cxx11::string = std::__cxx11::basic_string]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:28:9: required from here /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:839:10: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ totalsizeBitset, 100*(float)totalsizeBitset/totalsize); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp [ 58%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:3:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:3:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp: In member function ‘void gatb::core::debruijn::impl::graph3::addtuple(std::tuple, std::allocator >, unsigned int, unsigned int, unsigned int>&)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:372:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:374:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ if(minimizer==get<2>(tuple)){ ^~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:389:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/ograph.cpp:391:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ ++indiceUnitigs; ^~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:747:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, bool) [with long unsigned int SPAN = 96; std::__cxx11::string = std::__cxx11::basic_string]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:28:9: required from here /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:839:10: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ totalsizeBitset, 100*(float)totalsizeBitset/totalsize); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:8:0, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In instantiation of ‘uint64_t boomphf::mphf::totalBitSize() [with elem_t = long unsigned int; Hasher_t = gatb::core::debruijn::impl::hasher_t; uint64_t = long unsigned int]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp:747:60: required from ‘void gatb::core::debruijn::impl::bglue(gatb::core::tools::storage::impl::Storage*, std::__cxx11::string, int, int, bool) [with long unsigned int SPAN = 96; std::__cxx11::string = std::__cxx11::basic_string]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:28:9: required from here /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:839:10: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("Bitarray %12llu bits (%.2f %%) (array + ranks )\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ totalsizeBitset, 100*(float)totalsizeBitset/totalsize); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:41, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:41, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:41, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:41, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.hpp:24, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp:1, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 59%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 128]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(filenames.size() > _reduceTarget) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:956:5: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 128; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<128>::SuperKmer]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:18:7: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 32]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(filenames.size() > _reduceTarget) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:956:5: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 32; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<>::SuperKmer]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:18:7: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp [ 60%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 128]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 128]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(filenames.size() > _reduceTarget) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 128]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:956:5: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 128; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<128>::SuperKmer]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp:18:7: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 64]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(filenames.size() > _reduceTarget) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:956:5: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 64; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<64>::SuperKmer]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:18:7: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp [ 61%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 32]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 32]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(filenames.size() > _reduceTarget) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 64]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 64]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(filenames.size() > _reduceTarget) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 32]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:956:5: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 32; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<>::SuperKmer]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp:18:7: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 64]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:956:5: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 64; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<64>::SuperKmer]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:18:7: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::tools::math::LargeInt<2>]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::tools::math::LargeInt<2>]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::tools::math::NativeInt64]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::tools::math::NativeInt64]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 96]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(filenames.size() > _reduceTarget) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:956:5: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 96; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<96>::SuperKmer]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:18:7: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ [ 62%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:563:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:587:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:599:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:708:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:715:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountFileNames.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp: In instantiation of ‘std::vector > gatb::core::kmer::impl::TempCountFileMerger::mergeFiles(std::vector >) [with long unsigned int span = 96]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:556:22: required from ‘void gatb::core::kmer::impl::PartitionsByHashCommand::execute() [with long unsigned int span = 96]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:14:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:239:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(filenames.size() > _reduceTarget) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:335:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< _tmpCountIterators.size(); ii++) /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:342:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int ii=0; ii< currentFiles.size(); ii++) ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/api/ICountProcessor.hpp:25:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:5: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp: In instantiation of ‘void gatb::core::kmer::impl::Kmer::SuperKmer::save(gatb::core::tools::storage::impl::CacheSuperKmerBinFiles&, int) [with long unsigned int span = 96]’: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:956:5: required from ‘void gatb::core::kmer::impl::FillPartitions::processSuperkmer(gatb::core::kmer::impl::FillPartitions::SuperKmer&) [with long unsigned int span = 96; gatb::core::kmer::impl::FillPartitions::SuperKmer = gatb::core::kmer::impl::Kmer<96>::SuperKmer]’ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_96.cpp:18:7: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1442:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while(uid<4 && skid < superKmerLen) ~~~~~^~~~~~~~~~~~~~ /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/Model.hpp:1460:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(skid >= superKmerLen) break; ~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:24, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_64.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::tools::math::LargeInt<2>]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::tools::math::LargeInt<2>]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::tools::math::NativeInt64]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::tools::math::NativeInt64]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 62%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp [ 63%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp [ 64%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 65%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 128; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:13:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:310:21: warning: unused variable ‘abundance’ [-Wunused-variable] Abundance_t abundance = (*_abundanceMap)[count.value]; ^~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 32; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:13:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:310:21: warning: unused variable ‘abundance’ [-Wunused-variable] Abundance_t abundance = (*_abundanceMap)[count.value]; ^~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp [ 66%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp [ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 128; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp:13:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:310:21: warning: unused variable ‘abundance’ [-Wunused-variable] Abundance_t abundance = (*_abundanceMap)[count.value]; ^~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 32; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp:13:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:310:21: warning: unused variable ‘abundance’ [-Wunused-variable] Abundance_t abundance = (*_abundanceMap)[count.value]; ^~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 64; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:13:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:310:21: warning: unused variable ‘abundance’ [-Wunused-variable] Abundance_t abundance = (*_abundanceMap)[count.value]; ^~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 64; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp:13:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:310:21: warning: unused variable ‘abundance’ [-Wunused-variable] Abundance_t abundance = (*_abundanceMap)[count.value]; ^~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp [ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 96; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:13:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:310:21: warning: unused variable ‘abundance’ [-Wunused-variable] Abundance_t abundance = (*_abundanceMap)[count.value]; ^~~~~~~~~ In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:6:0: /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp: In instantiation of ‘void gatb::core::kmer::impl::MPHFAlgorithm::check() [with long unsigned int span = 96; Abundance_t = unsigned char; NodeState_t = unsigned char]’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_96.cpp:13:16: required from here /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:310:21: warning: unused variable ‘abundance’ [-Wunused-variable] Abundance_t abundance = (*_abundanceMap)[count.value]; ^~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp [ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 71%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp [ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp [ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_32.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 75%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 76%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp [ 76%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_128.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_32.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_64.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 77%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_64.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:21, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization6.cpp.in_96.cpp:2: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 78%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization5.cpp.in_96.cpp:5: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp [ 79%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_128.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 81%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp [ 81%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 83%] Linking CXX static library ../lib/None/libgatbcore.a cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/LinkTigs.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Simplifications.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/LinearCounter.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ModelData.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartiInfo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/Leon.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/RangeCoder.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o /usr/bin/ranlib ../lib/None/libgatbcore.a [ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 84%] Built target gatbcore-static make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/depend make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= Scanning dependencies of target gatb-core-cppunit make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 85%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/bank/TestBank.cpp In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 85%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/bank/TestLeon.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/compression/Leon.hpp:33, from /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/bank/TestLeon.cpp:32: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 85%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/bcalm/TestBcalm.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/depend make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake --color= Scanning dependencies of target dbginfo make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 86%] Building CXX object tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/tools/dbginfo.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/tools/dbginfo.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijn.cpp:33: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 87%] Linking CXX executable ../bin/None/dbginfo cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo -Wl,-rpath,/usr/lib/s390x-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 87%] Built target dbginfo [ 87%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/debruijn/TestDebruijnUnitigs.cpp:33: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 87%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/depend make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake --color= Scanning dependencies of target dbgh5 make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 88%] Building CXX object tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/tools/dbgh5.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/debruijn/TestSimplifications.cpp:33: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/tools/dbgh5.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] /<>/gatb-core-1.4.1+dfsg/gatb-core/tools/dbgh5.cpp: In function ‘void sendEmail(gatb::core::tools::misc::IProperties*, gatb::core::tools::misc::IProperties*)’: /<>/gatb-core-1.4.1+dfsg/gatb-core/tools/dbgh5.cpp:127:13: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] ::system (cmd.str().c_str()); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:494:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/Exception.hpp:34, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/system/api/IThread.hpp:31, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:35, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp:1: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 88%] Linking CXX executable ../bin/None/dbgh5 In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/s390x-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘bool gatb::core::tools::collections::impl::IteratorCountCompressedFile::readChunkIfNeeded(size_t) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:461:20, inlined from ‘void gatb::core::tools::collections::impl::IteratorCountCompressedFile::next() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]’ at /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:412:36: /usr/include/s390x-linux-gnu/bits/string_fortified.h:34:71: warning: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’: specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); ^ [ 88%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:27, from /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/debruijn/TestSimplificationsUnitigs.cpp:33: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 88%] Built target dbgh5 [ 89%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, from /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/kmer/TestDSK.cpp make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/depend make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools/CMakeFiles/leon.dir/DependInfo.cmake --color= Scanning dependencies of target leon make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 90%] Building CXX object tools/CMakeFiles/leon.dir/leon.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/leon.dir/leon.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/tools/leon.cpp [ 90%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:43, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/gatb_core.hpp:78, from /<>/gatb-core-1.4.1+dfsg/gatb-core/tools/leon.cpp:20: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 90%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/kmer/TestDebloom.cpp [ 91%] Linking CXX executable ../bin/None/leon cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/leon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/s390x-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 91%] Built target leon [ 92%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp [ 92%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 92%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp [ 92%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/kmer/TestKmer.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/kmer/TestKmerBank.cpp [ 93%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/kmer/TestMPHF.cpp [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/main.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/kmer/TestMPHF.cpp:27: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 95%] Linking CXX shared library ../lib/None/libgatbcore.so cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.0 -o ../lib/None/libgatbcore.so.0 CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/logging.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/ograph.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Graph.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/BloomBuilder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Configuration.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/LinearCounter.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/Model.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ModelData.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartiInfo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/PartitionsCommand.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemCommon.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemLinux.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/FileSystemMacos.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/System.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/SystemInfoCommon.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadLinux.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/system/impl/ThreadMacos.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/collections/impl/Bloom.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/DnaCoder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/HeaderCoder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/Leon.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/compression/RangeCoder.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Command.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/designpattern/impl/Observer.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization2.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/system/TestSystem.cpp [ 95%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/collections/TestBag.cpp [ 96%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/collections/TestCollection.cpp [ 96%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/collections/TestContainer.cpp [ 97%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/collections/TestIterable.cpp cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.0 ../lib/None/libgatbcore.so.0 ../lib/None/libgatbcore.so make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 97%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/collections/TestMap.cpp [ 97%] Built target gatbcore-dynamic [ 97%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/designpattern/TestIterators.cpp In file included from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/BooPHF.hpp:33:0, from /<>/gatb-core-1.4.1+dfsg/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/collections/TestMap.cpp:24: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector::print() const’: /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:535:45: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("bit array of size %lli: \n",_size); ~~~~~^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:539:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf(" (%llu) ",ii); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘uint64_t {aka long unsigned int}’ [-Wformat=] printf("%llu : %lli, ",ii,_ranks[ii]); ^ /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/BooPHF.h:548:43: warning: format ‘%lli’ expects argument of type ‘long long int’, but argument 3 has type ‘__gnu_cxx::__alloc_traits >::value_type {aka long unsigned int}’ [-Wformat=] [ 98%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/math/TestMath.cpp [ 98%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/misc/TestMisc.cpp [100%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include -I/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None -I/<>/gatb-core-1.4.1+dfsg/gatb-core/src -I/<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty -I/<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -Wall -Wno-unused-function -Wno-unknown-pragmas -Wno-invalid-offsetof -o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -c /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit/src/tools/storage/TestStorage.cpp [100%] Linking CXX executable ../../bin/None/gatb-core-cppunit cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-core-cppunit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/gatb-core-1.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/gatb-core-cppunit.dir/src/bank/TestBank.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bank/TestLeon.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/bcalm/TestBcalm.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijn.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestDebruijnUnitigs.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplifications.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/debruijn/TestSimplificationsUnitigs.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDSK.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestDebloom.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestMPHF.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/main.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/system/TestSystem.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestBag.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestIterable.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestMap.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/designpattern/TestIterators.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/math/TestMath.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -o ../../bin/None/gatb-core-cppunit -Wl,-rpath,/usr/lib/s390x-linux-gnu/hdf5/serial: ../../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/s390x-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -lz -ldl -lm -lcppunit make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [100%] Built target gatb-core-cppunit make[2]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' dh_auto_test -a -O--sourcedirectory=gatb-core create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=gatb-core dh_testroot -a -O--sourcedirectory=gatb-core dh_prep -a -O--sourcedirectory=gatb-core dh_auto_install -a -O--sourcedirectory=gatb-core cd obj-s390x-linux-gnu && make -j4 install DESTDIR=/<>/gatb-core-1.4.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -H/<>/gatb-core-1.4.1+dfsg/gatb-core -B/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/CMakeFiles /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/depend make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/json cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/src /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/src /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake --color= cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/BooPHF/ cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /<>/gatb-core-1.4.1+dfsg/gatb-core/thirdparty/json/json.hpp /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/include/None/json/ make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 0%] Built target thirdparty_copy make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/gatbcore-dynamic.dir/build'. make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/gatbcore-static.dir/build'. make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 43%] Built target gatbcore-dynamic [ 87%] Built target gatbcore-static make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/depend make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/depend make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/depend make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/depend make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/tools/CMakeFiles/leon.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' cd /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/gatb-core-1.4.1+dfsg/gatb-core /<>/gatb-core-1.4.1+dfsg/gatb-core/test/unit /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/test/unit/CMakeFiles/gatb-core-cppunit.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f tools/CMakeFiles/leon.dir/build.make tools/CMakeFiles/leon.dir/build make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f tools/CMakeFiles/dbgh5.dir/build.make tools/CMakeFiles/dbgh5.dir/build make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f tools/CMakeFiles/dbginfo.dir/build.make tools/CMakeFiles/dbginfo.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'tools/CMakeFiles/leon.dir/build'. make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make -f test/unit/CMakeFiles/gatb-core-cppunit.dir/build.make test/unit/CMakeFiles/gatb-core-cppunit.dir/build make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'tools/CMakeFiles/dbginfo.dir/build'. make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'tools/CMakeFiles/dbgh5.dir/build'. make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [ 88%] Built target leon [ 88%] Built target dbgh5 [ 89%] Built target dbginfo make[3]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[3]: Nothing to be done for 'test/unit/CMakeFiles/gatb-core-cppunit.dir/build'. make[3]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' [100%] Built target gatb-core-cppunit make[2]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/MicroSNP.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/Makefile -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank16.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank27.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank25.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank9.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank4.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank12.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank28.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank23.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank7.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank22.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank17.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank13.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank10.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank24.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank6.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank2.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank26.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank21.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank11.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank8.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank18.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank14.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank15.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank19.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank20.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank5.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank3.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn12.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn26.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn3.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn4.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn5.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn18.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn19.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn6.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn25.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn24.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/traversal1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn21.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn10.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn7.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn16.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn23.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn22.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn20.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn2.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn17.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn9.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn14.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn15.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn11.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn8.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/traversal2.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn27.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn13.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/CMakeLists.txt -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer8.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer12.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer4.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer7.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer17.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer9.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer16.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer3.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer5.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer2.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer13.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer10.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer14.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer11.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer15.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/kmer/kmer6.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage9.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage7.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage8.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage10.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage2.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage3.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage4.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage5.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage6.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/README.md -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators2.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading7.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators4.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading8.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators9.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/observer1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators8.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading6.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators3.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators6.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators5.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading2.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/iterators7.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/ToyTool.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/optionsparser1.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading5.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/optionsparser2.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading3.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading4.cpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/./README.txt -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/lib/s390x-linux-gnu/libgatbcore.a -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/lib/s390x-linux-gnu/libgatbcore.so.0 -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/lib/s390x-linux-gnu/libgatbcore.so -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/template -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/System.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/api -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/api/IBank.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/dag_vector.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Simplifications.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/api -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorDump.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmers.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.pri -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/api -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2 -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2/unionFind.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2/ograph.h -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2/binSeq.h -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2/ographBin.h -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2/ThreadPool.h -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2/logging.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/gatb_core.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/compression -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/compression/HeaderCoder.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/compression/RangeCoder.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/compression/CompressionUtils.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/Integer.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/api -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/ContainerSet.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IterableHelpers.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagCache.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagFile.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/OAHash.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagPartition.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BloomGroup.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IteratorFile.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BooPHF.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/MapMPHF.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Hash16.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionCache.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/api -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Collection.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Iterable.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Bag.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Container.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Pool.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IOptionsParser.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test/gatb-core-cppunit -- Set runtime path of "/<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/sample.fastq -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/sample.fastq.gz -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/leon2.fastq -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/sample1.fa -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/leon1.fastq -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/reads1.fa.gz -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/leon2.fastq.leon-ref -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/sample1.fa.gz -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/query.fa.gz -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/reads2.fa -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/album.txt -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/query.fa -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/reads3.fa.gz -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/README.md -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/sample2.fa -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/reads1.fa -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/test//db/microsnp.fa -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/bin/dbgh5 -- Set runtime path of "/<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/bin/dbginfo -- Set runtime path of "/<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/bin/dbginfo" to "" -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/bin/leon -- Set runtime path of "/<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/bin/leon" to "" -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/BooPHF -- Installing: /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/include/BooPHF/BooPHF.h make[1]: Leaving directory '/<>/gatb-core-1.4.1+dfsg/obj-s390x-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/<>/gatb-core-1.4.1+dfsg' dh_install -a d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include usr \ --movedev gatb-core/cmake usr/lib \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgatbcore-dev/usr/lib/s390x-linux-gnu install -d -m 755 debian/libgatbcore0/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libgatbcore.a debian/libgatbcore-dev/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libgatbcore.so debian/libgatbcore-dev/usr/lib/s390x-linux-gnu mv /<>/gatb-core-1.4.1+dfsg/debian/tmp/usr/lib/s390x-linux-gnu/libgatbcore.so.0 debian/libgatbcore0/usr/lib/s390x-linux-gnu PKGDEV=libgatbcore-dev PKGSHL=libgatbcore0 install -d -m 755 debian/libgatbcore-dev/usr mv debian/tmp/usr/include debian/libgatbcore-dev/usr install -d -m 755 debian/libgatbcore-dev/usr/lib/s390x-linux-gnu mv gatb-core/cmake debian/libgatbcore-dev/usr/lib/s390x-linux-gnu mkdir -p debian/gatb-core/usr/lib/gatb-core make[1]: Leaving directory '/<>/gatb-core-1.4.1+dfsg' dh_installdocs -a -O--sourcedirectory=gatb-core dh_installchangelogs -a -O--sourcedirectory=gatb-core dh_installexamples -a -O--sourcedirectory=gatb-core dh_installman -a -O--sourcedirectory=gatb-core dh_perl -a -O--sourcedirectory=gatb-core dh_link -a -O--sourcedirectory=gatb-core dh_strip_nondeterminism -a -O--sourcedirectory=gatb-core dh_compress -a -O--sourcedirectory=gatb-core dh_fixperms -a -O--sourcedirectory=gatb-core dh_missing -a -O--sourcedirectory=gatb-core dh_strip -a -O--sourcedirectory=gatb-core dh_makeshlibs -a -O--sourcedirectory=gatb-core dh_shlibdeps -a -O--sourcedirectory=gatb-core dpkg-shlibdeps: warning: symbol H5Pset_deflate used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Adelete used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Sclose used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tcopy used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol gzerror used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pthread_create used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Tinsert used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol H5Dread used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT32_g used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT8_g used by debian/libgatbcore0/usr/lib/s390x-linux-gnu/libgatbcore.so.0 found in none of the libraries dpkg-shlibdeps: warning: 57 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--sourcedirectory=gatb-core dh_gencontrol -a -O--sourcedirectory=gatb-core dpkg-gencontrol: warning: Depends field of package libgatbcore-dev: unknown substitution variable ${shlibs:Depends} dh_md5sums -a -O--sourcedirectory=gatb-core dh_builddeb -a -O--sourcedirectory=gatb-core INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 pkgstriptranslations: processing libgatbcore-dev (in debian/libgatbcore-dev); do_strip: , oemstrip: pkgstriptranslations: processing gatb-core (in debian/gatb-core); do_strip: , oemstrip: pkgstriptranslations: processing libgatbcore0 (in debian/libgatbcore0); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libgatbcore-dev/DEBIAN/control, package libgatbcore-dev, directory debian/libgatbcore-dev INFO: pkgstripfiles: waiting for lock (libgatbcore-dev) ... pkgstripfiles: processing control file: debian/libgatbcore0/DEBIAN/control, package libgatbcore0, directory debian/libgatbcore0 pkgstripfiles: processing control file: debian/gatb-core/DEBIAN/control, package gatb-core, directory debian/gatb-core INFO: pkgstripfiles: waiting for lock (libgatbcore0) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package gatb-core ... pkgstripfiles: No PNG files. dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.1+dfsg-2_s390x.deb'. INFO: pkgstripfiles: waiting for lock (libgatbcore-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libgatbcore0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgatbcore0' in '../libgatbcore0_1.4.1+dfsg-2_s390x.deb'. Searching for duplicated docs in dependency libgatbcore0... symlinking changelog.Debian.gz in libgatbcore-dev to file in libgatbcore0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libgatbcore-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.1+dfsg-2_s390x.deb'. INFO: pkgstriptranslations version 139 pkgstriptranslations: processing libgatbcore0-dbgsym (in debian/.debhelper/libgatbcore0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libgatbcore0/dbgsym-root/DEBIAN/control, package libgatbcore0-dbgsym, directory debian/.debhelper/libgatbcore0/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libgatbcore0-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgatbcore0-dbgsym' in 'debian/.debhelper/scratch-space/build-libgatbcore0/libgatbcore0-dbgsym_1.4.1+dfsg-2_s390x.deb'. INFO: pkgstriptranslations version 139 pkgstriptranslations: processing gatb-core-dbgsym (in debian/.debhelper/gatb-core/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/gatb-core/dbgsym-root/DEBIAN/control, package gatb-core-dbgsym, directory debian/.debhelper/gatb-core/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package gatb-core-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'gatb-core-dbgsym' in 'debian/.debhelper/scratch-space/build-gatb-core/gatb-core-dbgsym_1.4.1+dfsg-2_s390x.deb'. Renaming libgatbcore0-dbgsym_1.4.1+dfsg-2_s390x.deb to libgatbcore0-dbgsym_1.4.1+dfsg-2_s390x.ddeb Renaming gatb-core-dbgsym_1.4.1+dfsg-2_s390x.deb to gatb-core-dbgsym_1.4.1+dfsg-2_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../gatb-core_1.4.1+dfsg-2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build gatb-core-1.4.1+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180707-2334 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ gatb-core_1.4.1+dfsg-2_s390x.changes: ------------------------------------- Format: 1.8 Date: Fri, 06 Jul 2018 12:01:54 +0200 Source: gatb-core Binary: gatb-core libgatbcore0 libgatbcore-dev gatb-core-testdata Architecture: s390x Version: 1.4.1+dfsg-2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: gatb-core - Genome Analysis Toolbox with de-Bruijn graph gatb-core-testdata - Genome Analysis Toolbox with de-Bruijn graph (test data) libgatbcore-dev - development library of the Genome Analysis Toolbox libgatbcore0 - dynamic library of the Genome Analysis Toolbox Closes: 902161 Changes: gatb-core (1.4.1+dfsg-2) unstable; urgency=medium . * Install cmake files * Fix binary only build Closes: #902161 Checksums-Sha1: 0a49be0c124bfc9ca72c3f821db57fabd8c9ae4c 42924920 gatb-core-dbgsym_1.4.1+dfsg-2_s390x.ddeb 69fd5c9da700fccd679a52c936f9ebd405fe2441 9689 gatb-core_1.4.1+dfsg-2_s390x.buildinfo 80e8d59e29c9b86155c364775fc607eb27d00d2f 1700492 gatb-core_1.4.1+dfsg-2_s390x.deb 61f13666d9ea72fb4e90e23e4b91d423d0daa649 3573228 libgatbcore-dev_1.4.1+dfsg-2_s390x.deb 74f907af6c793564ffc5dc4ef81e0faca557296e 41207916 libgatbcore0-dbgsym_1.4.1+dfsg-2_s390x.ddeb 9c202d713df116a12b9a6983037034dd9a42afdf 1491156 libgatbcore0_1.4.1+dfsg-2_s390x.deb Checksums-Sha256: 309a4db0b03918ecd0d36d9142668579c6a058e2c7bccef65f2d0a164fc5cdfe 42924920 gatb-core-dbgsym_1.4.1+dfsg-2_s390x.ddeb aca62294c5787f193b01156f2e4d9adaa03a4ef681d8668ee6385ff2e3aed1db 9689 gatb-core_1.4.1+dfsg-2_s390x.buildinfo 9a50bbcc553d50a560e28490ba2e61c2049d0ee1f6b928a289f5bca5cf004011 1700492 gatb-core_1.4.1+dfsg-2_s390x.deb 9d3f08242ef1c809ad5f2e37987afc644f4ec5318e511581a679ecee85291e16 3573228 libgatbcore-dev_1.4.1+dfsg-2_s390x.deb 0912cd5bb708bf7b41e3af10660b9ec82b5568f9ed4a14913a7358689eda8c89 41207916 libgatbcore0-dbgsym_1.4.1+dfsg-2_s390x.ddeb 9583c8c260e8cc90ea452ee843efc2b2e78b434d8bc4dc25e62b314fa0d20200 1491156 libgatbcore0_1.4.1+dfsg-2_s390x.deb Files: e352fd2ddd87e1feacb5125719b961bf 42924920 debug optional gatb-core-dbgsym_1.4.1+dfsg-2_s390x.ddeb 52bc303a2bef76bcf23e8f2364542c51 9689 science optional gatb-core_1.4.1+dfsg-2_s390x.buildinfo f35df29bcf0c4adc1df532de7c406078 1700492 science optional gatb-core_1.4.1+dfsg-2_s390x.deb 1c9b6ebe7817374fe4cbe816b3117c32 3573228 libdevel optional libgatbcore-dev_1.4.1+dfsg-2_s390x.deb d7d39346b0d79ed304779bd986567e30 41207916 debug optional libgatbcore0-dbgsym_1.4.1+dfsg-2_s390x.ddeb 886e7f02c435cc50ed2fc5bff1d6cd84 1491156 libs optional libgatbcore0_1.4.1+dfsg-2_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ gatb-core_1.4.1+dfsg-2_s390x.deb -------------------------------- new debian package, version 2.0. size 1700492 bytes: control archive=1216 bytes. 1098 bytes, 22 lines control 553 bytes, 9 lines md5sums Package: gatb-core Version: 1.4.1+dfsg-2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 16031 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.0), libhdf5-100, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/GATB/gatb-core Description: Genome Analysis Toolbox with de-Bruijn graph The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/bin/ -rwxr-xr-x root/root 7137736 2018-07-06 10:01 ./usr/bin/dbgh5 -rwxr-xr-x root/root 7129528 2018-07-06 10:01 ./usr/bin/dbginfo -rwxr-xr-x root/root 2091336 2018-07-06 10:01 ./usr/bin/leon drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/lib/gatb-core/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/gatb-core/ -rw-r--r-- root/root 3802 2017-12-14 05:52 ./usr/share/doc/gatb-core/README.txt -rw-r--r-- root/root 232 2018-07-06 10:01 ./usr/share/doc/gatb-core/changelog.Debian.gz -rw-r--r-- root/root 34732 2018-07-06 10:01 ./usr/share/doc/gatb-core/copyright drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/man/man1/ -rw-r--r-- root/root 1391 2018-07-06 10:01 ./usr/share/man/man1/dbgh5.1.gz -rw-r--r-- root/root 300 2018-07-06 10:01 ./usr/share/man/man1/dbginfo.1.gz -rw-r--r-- root/root 652 2018-07-06 10:01 ./usr/share/man/man1/leon.1.gz libgatbcore-dev_1.4.1+dfsg-2_s390x.deb -------------------------------------- new debian package, version 2.0. size 3573228 bytes: control archive=7848 bytes. 1161 bytes, 26 lines control 23954 bytes, 280 lines md5sums Package: libgatbcore-dev Source: gatb-core Version: 1.4.1+dfsg-2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 72913 Depends: libgatbcore0 (= 1.4.1+dfsg-2) Section: libdevel Priority: optional Homepage: https://github.com/GATB/gatb-core Description: development library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the static library and the header files of the gatb-core library. drwxr-xr-x root/root 0 2018-07-06 10:01 ./ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/BooPHF/ -rw-r--r-- root/root 33854 2018-07-06 10:01 ./usr/include/BooPHF/BooPHF.h drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/bank/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/bank/api/ -rw-r--r-- root/root 2480 2017-12-14 05:52 ./usr/include/gatb/bank/api/IAlphabet.hpp -rw-r--r-- root/root 7380 2017-12-14 05:52 ./usr/include/gatb/bank/api/IBank.hpp -rw-r--r-- root/root 10441 2017-12-14 05:52 ./usr/include/gatb/bank/api/Sequence.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/bank/impl/ -rw-r--r-- root/root 3464 2017-12-14 05:52 ./usr/include/gatb/bank/impl/AbstractBank.hpp -rw-r--r-- root/root 2453 2017-12-14 05:52 ./usr/include/gatb/bank/impl/Alphabet.hpp -rw-r--r-- root/root 6527 2017-12-14 05:52 ./usr/include/gatb/bank/impl/Bank.hpp -rw-r--r-- root/root 4914 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankAlbum.hpp -rw-r--r-- root/root 6611 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankBinary.hpp -rw-r--r-- root/root 6467 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankComposite.hpp -rw-r--r-- root/root 3833 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp -rw-r--r-- root/root 8647 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankFasta.hpp -rw-r--r-- root/root 7447 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankHelpers.hpp -rw-r--r-- root/root 3917 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankRandom.hpp -rw-r--r-- root/root 5133 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankSplitter.hpp -rw-r--r-- root/root 4749 2017-12-14 05:52 ./usr/include/gatb/bank/impl/BankStrings.hpp -rw-r--r-- root/root 1434 2017-12-14 05:52 ./usr/include/gatb/bank/impl/Banks.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/bcalm2/ -rw-r--r-- root/root 4030 2017-12-14 05:52 ./usr/include/gatb/bcalm2/ThreadPool.h -rw-r--r-- root/root 1436 2017-12-14 05:52 ./usr/include/gatb/bcalm2/bcalm_algo.hpp -rw-r--r-- root/root 4690 2017-12-14 05:52 ./usr/include/gatb/bcalm2/bglue_algo.hpp -rw-r--r-- root/root 1152 2017-12-14 05:52 ./usr/include/gatb/bcalm2/binSeq.h -rw-r--r-- root/root 175 2017-12-14 05:52 ./usr/include/gatb/bcalm2/logging.hpp -rw-r--r-- root/root 3031 2017-12-14 05:52 ./usr/include/gatb/bcalm2/ograph.h -rw-r--r-- root/root 1198 2017-12-14 05:52 ./usr/include/gatb/bcalm2/ographBin.h -rw-r--r-- root/root 18205 2017-12-14 05:52 ./usr/include/gatb/bcalm2/unionFind.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/debruijn/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/debruijn/api/ -rw-r--r-- root/root 2432 2017-12-14 05:52 ./usr/include/gatb/debruijn/api/IContainerNode.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/debruijn/impl/ -rw-r--r-- root/root 4594 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp -rw-r--r-- root/root 6854 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/ContainerNode.hpp -rw-r--r-- root/root 2509 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/ExtremityInfo.hpp -rw-r--r-- root/root 5679 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/Frontline.hpp -rw-r--r-- root/root 58653 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/Graph.hpp -rw-r--r-- root/root 22051 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/GraphUnitigs.hpp -rw-r--r-- root/root 5719 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/IterativeExtensions.hpp -rw-r--r-- root/root 1539 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/LinkTigs.hpp -rw-r--r-- root/root 5478 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/NodesDeleter.hpp -rw-r--r-- root/root 5512 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/Simplifications.hpp -rw-r--r-- root/root 11140 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/Terminator.hpp -rw-r--r-- root/root 15192 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/Traversal.hpp -rw-r--r-- root/root 3324 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp -rw-r--r-- root/root 8544 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/dag_vector.hpp -rw-r--r-- root/root 3436 2017-12-14 05:52 ./usr/include/gatb/debruijn/impl/rank_vector.hpp -rw-r--r-- root/root 4431 2017-12-14 05:52 ./usr/include/gatb/gatb_core.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/kmer/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/kmer/api/ -rw-r--r-- root/root 9454 2017-12-14 05:52 ./usr/include/gatb/kmer/api/ICountProcessor.hpp -rw-r--r-- root/root 3629 2017-12-14 05:52 ./usr/include/gatb/kmer/api/IModel.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/kmer/impl/ -rw-r--r-- root/root 9901 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/BankKmerIterator.hpp -rw-r--r-- root/root 8051 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/BankKmers.hpp -rw-r--r-- root/root 3265 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/BloomAlgorithm.hpp -rw-r--r-- root/root 7309 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/BloomBuilder.hpp -rw-r--r-- root/root 4212 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/Configuration.hpp -rw-r--r-- root/root 2692 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp -rw-r--r-- root/root 1520 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/CountProcessor.hpp -rw-r--r-- root/root 4365 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp -rw-r--r-- root/root 7217 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/CountProcessorChain.hpp -rw-r--r-- root/root 6198 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp -rw-r--r-- root/root 8885 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/CountProcessorDump.hpp -rw-r--r-- root/root 6509 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp -rw-r--r-- root/root 4661 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/CountProcessorProxy.hpp -rw-r--r-- root/root 13153 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp -rw-r--r-- root/root 8419 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp -rw-r--r-- root/root 4860 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/DebloomAlgorithm.pri -rw-r--r-- root/root 3555 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp -rw-r--r-- root/root 3357 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp -rw-r--r-- root/root 2645 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/LinearCounter.hpp -rw-r--r-- root/root 8667 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp -rw-r--r-- root/root 64635 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/Model.hpp -rw-r--r-- root/root 9117 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/Model.pri -rw-r--r-- root/root 15211 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/PartiInfo.hpp -rw-r--r-- root/root 14719 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/PartitionsCommand.hpp -rw-r--r-- root/root 3306 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp -rw-r--r-- root/root 7629 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp -rw-r--r-- root/root 11434 2017-12-14 05:52 ./usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/system/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/system/api/ -rw-r--r-- root/root 5795 2017-12-14 05:52 ./usr/include/gatb/system/api/Exception.hpp -rw-r--r-- root/root 11165 2017-12-14 05:52 ./usr/include/gatb/system/api/IFileSystem.hpp -rw-r--r-- root/root 5840 2017-12-14 05:52 ./usr/include/gatb/system/api/IMemory.hpp -rw-r--r-- root/root 9305 2017-12-14 05:52 ./usr/include/gatb/system/api/ISmartPointer.hpp -rw-r--r-- root/root 4829 2017-12-14 05:52 ./usr/include/gatb/system/api/ISystemInfo.hpp -rw-r--r-- root/root 7881 2017-12-14 05:52 ./usr/include/gatb/system/api/IThread.hpp -rw-r--r-- root/root 3576 2017-12-14 05:52 ./usr/include/gatb/system/api/ITime.hpp -rw-r--r-- root/root 1362 2018-07-06 10:01 ./usr/include/gatb/system/api/config.hpp -rw-r--r-- root/root 30 2017-12-14 05:52 ./usr/include/gatb/system/api/config_sha1.hpp -rw-r--r-- root/root 2362 2017-12-14 05:52 ./usr/include/gatb/system/api/types.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/system/impl/ -rw-r--r-- root/root 7665 2017-12-14 05:52 ./usr/include/gatb/system/impl/FileSystemCommon.hpp -rw-r--r-- root/root 2668 2017-12-14 05:52 ./usr/include/gatb/system/impl/FileSystemLinux.hpp -rw-r--r-- root/root 2665 2017-12-14 05:52 ./usr/include/gatb/system/impl/FileSystemMacos.hpp -rw-r--r-- root/root 15273 2017-12-14 05:52 ./usr/include/gatb/system/impl/MemoryCommon.hpp -rw-r--r-- root/root 12357 2017-12-14 05:52 ./usr/include/gatb/system/impl/System.hpp -rw-r--r-- root/root 6104 2017-12-14 05:52 ./usr/include/gatb/system/impl/SystemInfoCommon.hpp -rw-r--r-- root/root 2272 2017-12-14 05:52 ./usr/include/gatb/system/impl/ThreadLinux.hpp -rw-r--r-- root/root 2272 2017-12-14 05:52 ./usr/include/gatb/system/impl/ThreadMacos.hpp -rw-r--r-- root/root 5247 2017-12-14 05:52 ./usr/include/gatb/system/impl/TimeCommon.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/template/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/collections/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/collections/api/ -rw-r--r-- root/root 3293 2017-12-14 05:52 ./usr/include/gatb/tools/collections/api/Bag.hpp -rw-r--r-- root/root 3221 2017-12-14 05:52 ./usr/include/gatb/tools/collections/api/Collection.hpp -rw-r--r-- root/root 2327 2017-12-14 05:52 ./usr/include/gatb/tools/collections/api/Container.hpp -rw-r--r-- root/root 4171 2017-12-14 05:52 ./usr/include/gatb/tools/collections/api/Iterable.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/collections/impl/ -rw-r--r-- root/root 9789 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/BagCache.hpp -rw-r--r-- root/root 9591 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/BagFile.hpp -rw-r--r-- root/root 4982 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/BagPartition.hpp -rw-r--r-- root/root 44536 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/Bloom.hpp -rw-r--r-- root/root 14525 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/BloomGroup.hpp -rw-r--r-- root/root 12711 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/BooPHF.hpp -rw-r--r-- root/root 5244 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp -rw-r--r-- root/root 4750 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/CollectionCache.hpp -rw-r--r-- root/root 2931 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/ContainerSet.hpp -rw-r--r-- root/root 10687 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/Hash16.hpp -rw-r--r-- root/root 6476 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/IterableHelpers.hpp -rw-r--r-- root/root 19432 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/IteratorFile.hpp -rw-r--r-- root/root 8054 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/MapMPHF.hpp -rw-r--r-- root/root 9199 2017-12-14 05:52 ./usr/include/gatb/tools/collections/impl/OAHash.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/compression/ -rw-r--r-- root/root 6182 2017-12-14 05:52 ./usr/include/gatb/tools/compression/CompressionUtils.hpp -rw-r--r-- root/root 7582 2017-12-14 05:52 ./usr/include/gatb/tools/compression/DnaCoder.hpp -rw-r--r-- root/root 4966 2017-12-14 05:52 ./usr/include/gatb/tools/compression/HeaderCoder.hpp -rw-r--r-- root/root 11304 2017-12-14 05:52 ./usr/include/gatb/tools/compression/Leon.hpp -rw-r--r-- root/root 3366 2017-12-14 05:52 ./usr/include/gatb/tools/compression/RangeCoder.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/designpattern/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/designpattern/api/ -rw-r--r-- root/root 15194 2017-12-14 05:52 ./usr/include/gatb/tools/designpattern/api/ICommand.hpp -rw-r--r-- root/root 6238 2017-12-14 05:52 ./usr/include/gatb/tools/designpattern/api/IObserver.hpp -rw-r--r-- root/root 11254 2017-12-14 05:52 ./usr/include/gatb/tools/designpattern/api/Iterator.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/designpattern/impl/ -rw-r--r-- root/root 5124 2017-12-14 05:52 ./usr/include/gatb/tools/designpattern/impl/Command.hpp -rw-r--r-- root/root 30983 2017-12-14 05:52 ./usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp -rw-r--r-- root/root 3343 2017-12-14 05:52 ./usr/include/gatb/tools/designpattern/impl/Observer.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/math/ -rw-r--r-- root/root 6294 2017-12-14 05:52 ./usr/include/gatb/tools/math/FastMinimizer.hpp -rw-r--r-- root/root 25292 2017-12-14 05:52 ./usr/include/gatb/tools/math/Integer.hpp -rw-r--r-- root/root 31633 2018-07-06 10:01 ./usr/include/gatb/tools/math/LargeInt.hpp -rw-r--r-- root/root 13349 2017-12-14 05:52 ./usr/include/gatb/tools/math/LargeInt1.pri -rw-r--r-- root/root 12789 2017-12-14 05:52 ./usr/include/gatb/tools/math/LargeInt2.pri -rw-r--r-- root/root 9560 2018-07-06 10:01 ./usr/include/gatb/tools/math/NativeInt128.hpp -rw-r--r-- root/root 4400 2018-07-06 10:01 ./usr/include/gatb/tools/math/NativeInt16.hpp -rw-r--r-- root/root 4400 2018-07-06 10:01 ./usr/include/gatb/tools/math/NativeInt32.hpp -rw-r--r-- root/root 10416 2018-07-06 10:01 ./usr/include/gatb/tools/math/NativeInt64.hpp -rw-r--r-- root/root 4279 2018-07-06 10:01 ./usr/include/gatb/tools/math/NativeInt8.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/misc/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/misc/api/ -rw-r--r-- root/root 5009 2018-07-06 10:01 ./usr/include/gatb/tools/misc/api/Abundance.hpp -rw-r--r-- root/root 6747 2017-12-14 05:52 ./usr/include/gatb/tools/misc/api/Data.hpp -rw-r--r-- root/root 11773 2017-12-14 05:52 ./usr/include/gatb/tools/misc/api/Enums.hpp -rw-r--r-- root/root 5472 2018-07-06 10:01 ./usr/include/gatb/tools/misc/api/IHistogram.hpp -rw-r--r-- root/root 7238 2017-12-14 05:52 ./usr/include/gatb/tools/misc/api/IOptionsParser.hpp -rw-r--r-- root/root 11471 2017-12-14 05:52 ./usr/include/gatb/tools/misc/api/IProperty.hpp -rw-r--r-- root/root 1696 2017-12-14 05:52 ./usr/include/gatb/tools/misc/api/Macros.hpp -rw-r--r-- root/root 5102 2017-12-14 05:52 ./usr/include/gatb/tools/misc/api/Range.hpp -rw-r--r-- root/root 11919 2017-12-14 05:52 ./usr/include/gatb/tools/misc/api/StringsRepository.hpp -rw-r--r-- root/root 5077 2017-12-14 05:52 ./usr/include/gatb/tools/misc/api/Vector.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/misc/impl/ -rw-r--r-- root/root 8121 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/Algorithm.hpp -rw-r--r-- root/root 7647 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/Histogram.hpp -rw-r--r-- root/root 3129 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/HostInfo.hpp -rw-r--r-- root/root 3887 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/LibraryInfo.hpp -rw-r--r-- root/root 13420 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/OptionsParser.hpp -rw-r--r-- root/root 12539 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/Pool.hpp -rw-r--r-- root/root 9266 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/Progress.hpp -rw-r--r-- root/root 9772 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/Property.hpp -rw-r--r-- root/root 2978 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/StringLine.hpp -rw-r--r-- root/root 3625 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/Stringify.hpp -rw-r--r-- root/root 5811 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/TimeInfo.hpp -rw-r--r-- root/root 3484 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/Tokenizer.hpp -rw-r--r-- root/root 11240 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/Tool.hpp -rw-r--r-- root/root 6337 2017-12-14 05:52 ./usr/include/gatb/tools/misc/impl/XmlReader.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/storage/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/storage/api/ -rw-r--r-- root/root 3217 2017-12-14 05:52 ./usr/include/gatb/tools/storage/api/ICell.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/include/gatb/tools/storage/impl/ -rw-r--r-- root/root 2965 2017-12-14 05:52 ./usr/include/gatb/tools/storage/impl/Cell.hpp -rw-r--r-- root/root 7256 2017-12-14 05:52 ./usr/include/gatb/tools/storage/impl/CollectionFile.hpp -rw-r--r-- root/root 15536 2018-07-06 10:01 ./usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp -rw-r--r-- root/root 19318 2018-07-06 10:01 ./usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp -rw-r--r-- root/root 23997 2017-12-14 05:52 ./usr/include/gatb/tools/storage/impl/Storage.hpp -rw-r--r-- root/root 25930 2017-12-14 05:52 ./usr/include/gatb/tools/storage/impl/Storage.tpp -rw-r--r-- root/root 15794 2017-12-14 05:52 ./usr/include/gatb/tools/storage/impl/StorageFile.hpp -rw-r--r-- root/root 15155 2018-07-06 10:01 ./usr/include/gatb/tools/storage/impl/StorageHDF5.hpp -rw-r--r-- root/root 7380 2017-12-14 05:52 ./usr/include/gatb/tools/storage/impl/StorageTools.hpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/lib/s390x-linux-gnu/ drwxr-xr-x root/root 0 2017-12-14 05:52 ./usr/lib/s390x-linux-gnu/cmake/ -rw-r--r-- root/root 753 2017-12-14 05:52 ./usr/lib/s390x-linux-gnu/cmake/CheckCompiler.cmake -rw-r--r-- root/root 1300 2017-12-14 05:52 ./usr/lib/s390x-linux-gnu/cmake/CppUnit.cmake -rw-r--r-- root/root 1903 2017-12-14 05:52 ./usr/lib/s390x-linux-gnu/cmake/DefineInteger.cmake -rw-r--r-- root/root 5750 2017-12-14 05:52 ./usr/lib/s390x-linux-gnu/cmake/Delivery.cmake -rw-r--r-- root/root 2081 2017-12-14 05:52 ./usr/lib/s390x-linux-gnu/cmake/GatbCore.cmake -rw-r--r-- root/root 30565 2017-12-14 05:52 ./usr/lib/s390x-linux-gnu/cmake/UseLATEX.cmake -rw-r--r-- root/root 72748526 2018-07-06 10:01 ./usr/lib/s390x-linux-gnu/libgatbcore.a lrwxrwxrwx root/root 0 2018-07-06 10:01 ./usr/lib/s390x-linux-gnu/libgatbcore.so -> libgatbcore.so.0 drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/ lrwxrwxrwx root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/changelog.Debian.gz -> ../libgatbcore0/changelog.Debian.gz -rw-r--r-- root/root 34732 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/copyright drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/examples/ -rw-r--r-- root/root 1193 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/CMakeLists.txt -rw-r--r-- root/root 470 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/Makefile -rw-r--r-- root/root 3072 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/README.md drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/examples/bank/ -rw-r--r-- root/root 1799 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank1.cpp -rw-r--r-- root/root 1708 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank10.cpp.gz -rw-r--r-- root/root 2373 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank11.cpp -rw-r--r-- root/root 3413 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank12.cpp -rw-r--r-- root/root 3183 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank13.cpp -rw-r--r-- root/root 2514 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank14.cpp -rw-r--r-- root/root 2097 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank15.cpp -rw-r--r-- root/root 2991 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank16.cpp -rw-r--r-- root/root 2421 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank17.cpp -rw-r--r-- root/root 2938 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank18.cpp -rw-r--r-- root/root 2206 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank19.cpp -rw-r--r-- root/root 2071 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank2.cpp -rw-r--r-- root/root 1852 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank20.cpp -rw-r--r-- root/root 3814 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank21.cpp -rw-r--r-- root/root 1790 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank22.cpp -rw-r--r-- root/root 2106 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank23.cpp -rw-r--r-- root/root 2727 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank24.cpp -rw-r--r-- root/root 3567 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank25.cpp -rw-r--r-- root/root 1963 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank26.cpp -rw-r--r-- root/root 2983 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank27.cpp -rw-r--r-- root/root 2578 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank28.cpp -rw-r--r-- root/root 2345 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank3.cpp -rw-r--r-- root/root 2604 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank4.cpp -rw-r--r-- root/root 1854 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank5.cpp -rw-r--r-- root/root 3855 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank6.cpp -rw-r--r-- root/root 2795 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank7.cpp -rw-r--r-- root/root 3918 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank8.cpp -rw-r--r-- root/root 3448 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/bank/bank9.cpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/examples/debruijn/ -rw-r--r-- root/root 1730 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn1.cpp -rw-r--r-- root/root 2315 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn10.cpp -rw-r--r-- root/root 3480 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn11.cpp -rw-r--r-- root/root 1947 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn12.cpp -rw-r--r-- root/root 1375 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn13.cpp -rw-r--r-- root/root 1836 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn14.cpp -rw-r--r-- root/root 1841 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn15.cpp -rw-r--r-- root/root 2288 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn16.cpp -rw-r--r-- root/root 2497 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn17.cpp -rw-r--r-- root/root 2215 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn18.cpp.gz -rw-r--r-- root/root 2900 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn19.cpp.gz -rw-r--r-- root/root 1720 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn2.cpp -rw-r--r-- root/root 3213 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn20.cpp.gz -rw-r--r-- root/root 2782 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn21.cpp -rw-r--r-- root/root 2550 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn22.cpp.gz -rw-r--r-- root/root 414 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn23.cpp -rw-r--r-- root/root 1593 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn24.cpp.gz -rw-r--r-- root/root 1602 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn25.cpp.gz -rw-r--r-- root/root 1629 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn26.cpp -rw-r--r-- root/root 2509 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn27.cpp -rw-r--r-- root/root 1707 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn3.cpp -rw-r--r-- root/root 1721 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn4.cpp -rw-r--r-- root/root 1945 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn5.cpp -rw-r--r-- root/root 2474 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn6.cpp -rw-r--r-- root/root 3246 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn7.cpp -rw-r--r-- root/root 2453 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn8.cpp -rw-r--r-- root/root 2245 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/debruijn9.cpp -rw-r--r-- root/root 3568 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/traversal1.cpp -rw-r--r-- root/root 3612 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/debruijn/traversal2.cpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/examples/kmer/ -rw-r--r-- root/root 1159 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer1.cpp -rw-r--r-- root/root 3064 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer10.cpp -rw-r--r-- root/root 2063 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer11.cpp.gz -rw-r--r-- root/root 2425 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer12.cpp.gz -rw-r--r-- root/root 1976 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer13.cpp.gz -rw-r--r-- root/root 1854 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer14.cpp.gz -rw-r--r-- root/root 1966 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer15.cpp.gz -rw-r--r-- root/root 2631 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer16.cpp -rw-r--r-- root/root 1647 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer17.cpp.gz -rw-r--r-- root/root 1514 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer2.cpp.gz -rw-r--r-- root/root 1440 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer3.cpp -rw-r--r-- root/root 3183 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer4.cpp -rw-r--r-- root/root 1954 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer5.cpp.gz -rw-r--r-- root/root 1544 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer6.cpp -rw-r--r-- root/root 1743 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer7.cpp.gz -rw-r--r-- root/root 1962 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer8.cpp.gz -rw-r--r-- root/root 1910 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/kmer/kmer9.cpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/examples/protos/ -rw-r--r-- root/root 3789 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/protos/MicroSNP.cpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/examples/storage/ -rw-r--r-- root/root 2299 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage1.cpp -rw-r--r-- root/root 2167 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage10.cpp -rw-r--r-- root/root 2210 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage2.cpp -rw-r--r-- root/root 1465 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage3.cpp -rw-r--r-- root/root 1717 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage4.cpp -rw-r--r-- root/root 305 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage5.cpp -rw-r--r-- root/root 1489 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage6.cpp.gz -rw-r--r-- root/root 1338 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage7.cpp -rw-r--r-- root/root 2838 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage8.cpp -rw-r--r-- root/root 1404 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/storage/storage9.cpp drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore-dev/examples/tools/ -rw-r--r-- root/root 1966 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/ToyTool.cpp.gz -rw-r--r-- root/root 837 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators1.cpp -rw-r--r-- root/root 1179 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators2.cpp -rw-r--r-- root/root 962 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators3.cpp -rw-r--r-- root/root 1676 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators4.cpp -rw-r--r-- root/root 1080 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators5.cpp -rw-r--r-- root/root 1259 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators6.cpp -rw-r--r-- root/root 1079 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators7.cpp -rw-r--r-- root/root 1394 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators8.cpp -rw-r--r-- root/root 1175 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/iterators9.cpp -rw-r--r-- root/root 2363 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/multithreading1.cpp -rw-r--r-- root/root 3709 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/multithreading2.cpp -rw-r--r-- root/root 2001 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/multithreading3.cpp -rw-r--r-- root/root 2290 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/multithreading4.cpp -rw-r--r-- root/root 2894 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/multithreading5.cpp -rw-r--r-- root/root 3069 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/multithreading6.cpp -rw-r--r-- root/root 2601 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/multithreading7.cpp -rw-r--r-- root/root 3479 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/multithreading8.cpp -rw-r--r-- root/root 1641 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/observer1.cpp -rw-r--r-- root/root 1503 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/optionsparser1.cpp -rw-r--r-- root/root 749 2017-12-14 05:52 ./usr/share/doc/libgatbcore-dev/examples/tools/optionsparser2.cpp libgatbcore0_1.4.1+dfsg-2_s390x.deb ----------------------------------- new debian package, version 2.0. size 1491156 bytes: control archive=1160 bytes. 1129 bytes, 25 lines control 227 bytes, 3 lines md5sums 27 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libgatbcore0 Source: gatb-core Version: 1.4.1+dfsg-2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 10144 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.0), libstdc++6 (>= 7) Section: libs Priority: optional Homepage: https://github.com/GATB/gatb-core Description: dynamic library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the dynamic library. drwxr-xr-x root/root 0 2018-07-06 10:01 ./ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 10340656 2018-07-06 10:01 ./usr/lib/s390x-linux-gnu/libgatbcore.so.0 drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-06 10:01 ./usr/share/doc/libgatbcore0/ -rw-r--r-- root/root 232 2018-07-06 10:01 ./usr/share/doc/libgatbcore0/changelog.Debian.gz -rw-r--r-- root/root 34732 2018-07-06 10:01 ./usr/share/doc/libgatbcore0/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 2527732 Build-Time: 435 Distribution: cosmic-proposed Host Architecture: s390x Install-Time: 21 Job: gatb-core_1.4.1+dfsg-2.dsc Machine Architecture: s390x Package: gatb-core Package-Time: 457 Source-Version: 1.4.1+dfsg-2 Space: 2527732 Status: successful Version: 1.4.1+dfsg-2 -------------------------------------------------------------------------------- Finished at 20180707-2334 Build needed 00:07:37, 2527732k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15096089 Scanning for processes to kill in build PACKAGEBUILD-15096089