https://launchpad.net/ubuntu/+source/genomicsdb/1.4.4-2build1/+build/25448812 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-013 5.4.0-139-generic #156-Ubuntu SMP Fri Jan 20 17:27:47 UTC 2023 s390x Buildd toolchain package versions: launchpad-buildd_230~623~ubuntu20.04.1 python3-lpbuildd_230~623~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.10 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 20 Mar 10:41:37 ntpdate[1886]: adjust time server 10.211.37.1 offset -0.000027 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25448812 --image-type chroot /home/buildd/filecache-default/22b7ec405c1fe881d1e0795ebcfd3bff662be15c Creating target for build PACKAGEBUILD-25448812 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25448812 Starting target for build PACKAGEBUILD-25448812 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25448812 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25448812 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25448812 Updating target for build PACKAGEBUILD-25448812 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x Packages [1318 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe s390x Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5932 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x Packages [39.7 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [24.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe s390x Packages [94.0 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [57.0 kB] Fetched 22.8 MB in 4s (5524 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-13-base libproc2-0 The following packages will be upgraded: adduser advancecomp apt bash binutils binutils-common binutils-s390x-linux-gnu ca-certificates coreutils cpp cpp-12 dash debconf diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname libacl1 libapparmor1 libapt-pkg6.0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfakeroot libgcc-12-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libitm1 libkmod2 liblzma5 libmpfr6 libncurses6 libncursesw6 libp11-kit0 libpcre2-8-0 libperl5.36 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libubsan1 libudev1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata xz-utils zlib1g 107 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 85.9 MB of archives. After this operation, 6690 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar/main s390x bash s390x 5.2.15-2ubuntu1 [786 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main s390x coreutils s390x 9.1-1ubuntu2 [1390 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main s390x libcrypt-dev s390x 1:4.4.33-2 [114 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libc6-dev s390x 2.37-0ubuntu2 [1511 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libc-dev-bin s390x 2.37-0ubuntu2 [19.6 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main s390x libcrypt1 s390x 1:4.4.33-2 [82.2 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main s390x linux-libc-dev s390x 6.1.0-16.16 [1607 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libc6 s390x 2.37-0ubuntu2 [2684 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libc-bin s390x 2.37-0ubuntu2 [599 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main s390x gcc-13-base s390x 13-20230305-1ubuntu1 [40.6 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main s390x libgcc-s1 s390x 13-20230305-1ubuntu1 [35.6 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main s390x liblzma5 s390x 5.4.1-0.2 [124 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main s390x libgcrypt20 s390x 1.10.1-3ubuntu1 [466 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main s390x libstdc++6 s390x 13-20230305-1ubuntu1 [875 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main s390x libacl1 s390x 2.3.1-3 [16.5 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main s390x libapparmor1 s390x 3.0.8-1ubuntu2 [46.2 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main s390x libaudit-common all 1:3.0.9-1 [5142 B] Get:18 http://ftpmaster.internal/ubuntu lunar/main s390x libcap-ng0 s390x 0.8.3-1build2 [15.1 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main s390x libaudit1 s390x 1:3.0.9-1 [45.9 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main s390x libcap2 s390x 1:2.66-3ubuntu2 [28.4 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main s390x libperl5.36 s390x 5.36.0-7 [4716 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main s390x perl s390x 5.36.0-7 [235 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main s390x perl-base s390x 5.36.0-7 [1713 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main s390x perl-modules-5.36 all 5.36.0-7 [2984 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main s390x libdb5.3 s390x 5.3.28+dfsg2-1 [707 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main s390x zlib1g s390x 1:1.2.13.dfsg-1ubuntu4 [65.6 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main s390x debconf all 1.5.82 [125 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main s390x libssl3 s390x 3.0.8-1ubuntu1 [1576 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main s390x libzstd1 s390x 1.5.4+dfsg2-4 [269 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main s390x libkmod2 s390x 30+20221128-1ubuntu1 [48.1 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main s390x libseccomp2 s390x 2.5.4-1ubuntu3 [49.1 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main s390x libpcre2-8-0 s390x 10.42-1 [210 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main s390x libselinux1 s390x 3.4-1build4 [77.2 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main s390x systemd-sysv s390x 252.5-2ubuntu2 [11.5 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main s390x systemd s390x 252.5-2ubuntu2 [2861 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main s390x libsystemd-shared s390x 252.5-2ubuntu2 [1729 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main s390x libcryptsetup12 s390x 2:2.6.1-1ubuntu1 [215 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main s390x libp11-kit0 s390x 0.24.1-2ubuntu1 [249 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main s390x libsystemd0 s390x 252.5-2ubuntu2 [378 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main s390x libudev1 s390x 252.5-2ubuntu2 [148 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main s390x libapt-pkg6.0 s390x 2.6.0 [888 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main s390x dpkg s390x 1.21.21ubuntu1 [1380 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main s390x dash s390x 0.5.12-2ubuntu1 [88.8 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main s390x diffutils s390x 1:3.8-4 [177 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main s390x grep s390x 3.8-5 [160 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main s390x hostname s390x 3.23+nmu1ubuntu1 [10.8 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main s390x ncurses-bin s390x 6.4-2 [186 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main s390x sed s390x 4.9-1 [193 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main s390x ncurses-base all 6.4-2 [21.3 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main s390x sysvinit-utils s390x 3.06-2ubuntu1 [32.7 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main s390x lsb-base all 11.6 [4606 B] Get:52 http://ftpmaster.internal/ubuntu lunar/main s390x adduser all 3.129ubuntu1 [59.0 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main s390x gpgv s390x 2.2.40-1ubuntu2 [134 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main s390x libgnutls30 s390x 3.7.8-5ubuntu1 [892 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main s390x apt s390x 2.6.0 [1360 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main s390x logsave s390x 1.47.0-1ubuntu1 [14.1 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main s390x libext2fs2 s390x 1.47.0-1ubuntu1 [212 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main s390x e2fsprogs s390x 1.47.0-1ubuntu1 [589 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main s390x libattr1 s390x 1:2.5.1-4 [12.4 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main s390x libdebconfclient0 s390x 0.267ubuntu1 [7838 B] Get:61 http://ftpmaster.internal/ubuntu lunar/main s390x libsemanage-common all 3.4-1build4 [9852 B] Get:62 http://ftpmaster.internal/ubuntu lunar/main s390x libsemanage2 s390x 3.4-1build4 [88.5 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main s390x libncurses6 s390x 6.4-2 [111 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main s390x libncursesw6 s390x 6.4-2 [143 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main s390x libtinfo6 s390x 6.4-2 [101 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main s390x libcom-err2 s390x 1.47.0-1ubuntu1 [14.4 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main s390x libproc2-0 s390x 2:4.0.3-1ubuntu1 [52.0 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main s390x libss2 s390x 1.47.0-1ubuntu1 [16.6 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main s390x procps s390x 2:4.0.3-1ubuntu1 [605 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main s390x sensible-utils all 0.0.17+nmu1 [19.3 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main s390x openssl s390x 3.0.8-1ubuntu1 [1166 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main s390x ca-certificates all 20230311 [155 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main s390x readline-common all 8.2-1.3 [55.7 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main s390x libreadline8 s390x 8.2-1.3 [151 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main s390x libsqlite3-0 s390x 3.40.1-1 [642 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main s390x tzdata all 2022g-7ubuntu2 [270 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main s390x xz-utils s390x 5.4.1-0.2 [270 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main s390x advancecomp s390x 2.5-1 [174 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main s390x libctf0 s390x 2.40-2ubuntu3 [94.2 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main s390x libctf-nobfd0 s390x 2.40-2ubuntu3 [95.3 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main s390x binutils-s390x-linux-gnu s390x 2.40-2ubuntu3 [2061 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main s390x libbinutils s390x 2.40-2ubuntu3 [463 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main s390x binutils s390x 2.40-2ubuntu3 [3038 B] Get:84 http://ftpmaster.internal/ubuntu lunar/main s390x binutils-common s390x 2.40-2ubuntu3 [226 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main s390x libmpfr6 s390x 4.2.0-1 [278 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main s390x g++-12 s390x 12.2.0-17ubuntu1 [9435 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/main s390x gcc-12 s390x 12.2.0-17ubuntu1 [16.2 MB] Get:88 http://ftpmaster.internal/ubuntu lunar/main s390x cpp-12 s390x 12.2.0-17ubuntu1 [8164 kB] Get:89 http://ftpmaster.internal/ubuntu lunar/main s390x libubsan1 s390x 13-20230305-1ubuntu1 [1108 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main s390x libgomp1 s390x 13-20230305-1ubuntu1 [146 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/main s390x libitm1 s390x 13-20230305-1ubuntu1 [31.3 kB] Get:92 http://ftpmaster.internal/ubuntu lunar/main s390x libatomic1 s390x 13-20230305-1ubuntu1 [9444 B] Get:93 http://ftpmaster.internal/ubuntu lunar/main s390x libasan8 s390x 13-20230305-1ubuntu1 [2839 kB] Get:94 http://ftpmaster.internal/ubuntu lunar/main s390x libstdc++-12-dev s390x 12.2.0-17ubuntu1 [2191 kB] Get:95 http://ftpmaster.internal/ubuntu lunar/main s390x libgcc-12-dev s390x 12.2.0-17ubuntu1 [852 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/main s390x libcc1-0 s390x 13-20230305-1ubuntu1 [50.3 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/main s390x gcc-12-base s390x 12.2.0-17ubuntu1 [41.4 kB] Get:98 http://ftpmaster.internal/ubuntu lunar/main s390x g++ s390x 4:12.2.0-3ubuntu1 [1116 B] Get:99 http://ftpmaster.internal/ubuntu lunar/main s390x gcc s390x 4:12.2.0-3ubuntu1 [5168 B] Get:100 http://ftpmaster.internal/ubuntu lunar/main s390x cpp s390x 4:12.2.0-3ubuntu1 [27.8 kB] Get:101 http://ftpmaster.internal/ubuntu lunar/main s390x dpkg-dev all 1.21.21ubuntu1 [1117 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/main s390x libdpkg-perl all 1.21.21ubuntu1 [247 kB] Get:103 http://ftpmaster.internal/ubuntu lunar/main s390x lto-disabled-list all 38 [12.3 kB] Get:104 http://ftpmaster.internal/ubuntu lunar/main s390x libfakeroot s390x 1.31-1.1 [30.9 kB] Get:105 http://ftpmaster.internal/ubuntu lunar/main s390x fakeroot s390x 1.31-1.1 [59.6 kB] Get:106 http://ftpmaster.internal/ubuntu lunar/main s390x gpg s390x 2.2.40-1ubuntu2 [508 kB] Get:107 http://ftpmaster.internal/ubuntu lunar/main s390x gpgconf s390x 2.2.40-1ubuntu2 [94.8 kB] Get:108 http://ftpmaster.internal/ubuntu lunar/main s390x gpg-agent s390x 2.2.40-1ubuntu2 [213 kB] Get:109 http://ftpmaster.internal/ubuntu lunar/main s390x pkgbinarymangler all 152 [16.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.9 MB in 4s (19.5 MB/s) (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_s390x.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_s390x.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 12875 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.33-2_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.33-2) over (1:4.4.33-1) ... Preparing to unpack .../libc6-dev_2.37-0ubuntu2_s390x.deb ... Unpacking libc6-dev:s390x (2.37-0ubuntu2) over (2.36-0ubuntu4) ... Preparing to unpack .../libc-dev-bin_2.37-0ubuntu2_s390x.deb ... Unpacking libc-dev-bin (2.37-0ubuntu2) over (2.36-0ubuntu4) ... 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Unpacking gcc-13-base:s390x (13-20230305-1ubuntu1) ... Setting up gcc-13-base:s390x (13-20230305-1ubuntu1) ... (Reading database ... 14910 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13-20230305-1ubuntu1_s390x.deb ... Unpacking libgcc-s1:s390x (13-20230305-1ubuntu1) over (12.2.0-10ubuntu1) ... Setting up libgcc-s1:s390x (13-20230305-1ubuntu1) ... (Reading database ... 14910 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.2_s390x.deb ... Unpacking liblzma5:s390x (5.4.1-0.2) over (5.2.9-0.0) ... Setting up liblzma5:s390x (5.4.1-0.2) ... (Reading database ... 14910 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-3ubuntu1_s390x.deb ... Unpacking libgcrypt20:s390x (1.10.1-3ubuntu1) over (1.10.1-2ubuntu1) ... Setting up libgcrypt20:s390x (1.10.1-3ubuntu1) ... (Reading database ... 14910 files and directories currently installed.) 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Setting up libgomp1:s390x (13-20230305-1ubuntu1) ... Setting up libfakeroot:s390x (1.31-1.1) ... Setting up gcc-12-base:s390x (12.2.0-17ubuntu1) ... Setting up tzdata (2022g-7ubuntu2) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Mar 20 10:41:59 UTC 2023. Universal Time is now: Mon Mar 20 10:41:59 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.31-1.1) ... Setting up perl-modules-5.36 (5.36.0-7) ... Setting up libmpfr6:s390x (4.2.0-1) ... Setting up libncurses6:s390x (6.4-2) ... Setting up xz-utils (5.4.1-0.2) ... Setting up libproc2-0:s390x (2:4.0.3-1ubuntu1) ... Setting up libatomic1:s390x (13-20230305-1ubuntu1) ... Setting up libss2:s390x (1.47.0-1ubuntu1) ... Setting up libncursesw6:s390x (6.4-2) ... Setting up logsave (1.47.0-1ubuntu1) ... Setting up libubsan1:s390x (13-20230305-1ubuntu1) ... Setting up advancecomp (2.5-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libcrypt-dev:s390x (1:4.4.33-2) ... Setting up libasan8:s390x (13-20230305-1ubuntu1) ... Setting up procps (2:4.0.3-1ubuntu1) ... Setting up libcryptsetup12:s390x (2:2.6.1-1ubuntu1) ... Setting up libbinutils:s390x (2.40-2ubuntu3) ... Setting up libc-dev-bin (2.37-0ubuntu2) ... Setting up openssl (3.0.8-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:s390x (13-20230305-1ubuntu1) ... Setting up libperl5.36:s390x (5.36.0-7) ... Setting up libitm1:s390x (13-20230305-1ubuntu1) ... Setting up libkmod2:s390x (30+20221128-1ubuntu1) ... Setting up libctf0:s390x (2.40-2ubuntu3) ... Setting up cpp-12 (12.2.0-17ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.40-2ubuntu3) ... Setting up pkgbinarymangler (152) ... Setting up libreadline8:s390x (8.2-1.3) ... Setting up e2fsprogs (1.47.0-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up binutils (2.40-2ubuntu3) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 22 added, 6 removed; done. Setting up perl (5.36.0-7) ... Setting up libgcc-12-dev:s390x (12.2.0-17ubuntu1) ... Setting up libsystemd-shared:s390x (252.5-2ubuntu2) ... Setting up libdpkg-perl (1.21.21ubuntu1) ... Setting up cpp (4:12.2.0-3ubuntu1) ... Setting up gpgconf (2.2.40-1ubuntu2) ... Setting up libc6-dev:s390x (2.37-0ubuntu2) ... Setting up gpg (2.2.40-1ubuntu2) ... Setting up gpg-agent (2.2.40-1ubuntu2) ... Setting up libstdc++-12-dev:s390x (12.2.0-17ubuntu1) ... Setting up systemd (252.5-2ubuntu2) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up dpkg-dev (1.21.21ubuntu1) ... Setting up gcc-12 (12.2.0-17ubuntu1) ... Setting up g++-12 (12.2.0-17ubuntu1) ... Setting up systemd-sysv (252.5-2ubuntu2) ... Setting up gcc (4:12.2.0-3ubuntu1) ... Setting up g++ (4:12.2.0-3ubuntu1) ... Processing triggers for libc-bin (2.37-0ubuntu2) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25448812 s390x lunar-proposed -c chroot:build-PACKAGEBUILD-25448812 --arch=s390x --dist=lunar-proposed --nolog genomicsdb_1.4.4-2build1.dsc Initiating build PACKAGEBUILD-25448812 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-139-generic #156-Ubuntu SMP Fri Jan 20 17:27:47 UTC 2023 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-013.buildd +==============================================================================+ | genomicsdb 1.4.4-2build1 (s390x) Mon, 20 Mar 2023 10:42:02 +0000 | +==============================================================================+ Package: genomicsdb Version: 1.4.4-2build1 Source Version: 1.4.4-2build1 Distribution: lunar-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25448812/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/genomicsdb-dA2qUJ/resolver-sRImeU' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- genomicsdb_1.4.4-2build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/genomicsdb-dA2qUJ/genomicsdb-1.4.4' with '<>' I: NOTICE: Log filtering will replace 'build/genomicsdb-dA2qUJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), catch2, cmake, default-jdk, javahelper, libbz2-dev, libcurlpp-dev, libfmt-dev, libmuparserx-dev, libopenmpi-dev, libprotobuf-dev, libspdlog-dev, libssl-dev, libtiledb-dev, liblzma-dev, maven-debian-helper, protobuf-compiler, rapidjson-dev, testng, uuid-dev, build-essential, fakeroot, chrpath Filtered Build-Depends: debhelper-compat (= 13), catch2, cmake, default-jdk, javahelper, libbz2-dev, libcurlpp-dev, libfmt-dev, libmuparserx-dev, libopenmpi-dev, libprotobuf-dev, libspdlog-dev, libssl-dev, libtiledb-dev, liblzma-dev, maven-debian-helper, protobuf-compiler, rapidjson-dev, testng, uuid-dev, build-essential, fakeroot, chrpath dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [509 B] Get:5 copy:/<>/apt_archive ./ Packages [577 B] Fetched 2043 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adwaita-icon-theme ant at-spi2-common autoconf automake autopoint autotools-dev bsdextrautils ca-certificates-java catch2 chrpath cmake cmake-data dctrl-tools debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dirmngr dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran-12 gnupg gnupg-l10n gnupg-utils gpg-wks-client gpg-wks-server gpgsm groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ibverbs-providers intltool-debian java-common java-wrappers javahelper junit4 junit5 libaopalliance-java libapache-pom-java libapiguardian-java libarchive-zip-perl libarchive13 libasm-java libasound2 libasound2-data libatinject-jsr330-api-java libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbatik-java libbrotli1 libbsd0 libbsh-java libbz2-dev libcairo2 libcbor0.8 libcdi-api-java libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommons-beanutils-java libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-compress-java libcommons-configuration-java libcommons-digester-java libcommons-io-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcommons-text-java libcommons-validator-java libcups2 libcurl4 libcurl4-openssl-dev libcurlpp-dev libcurlpp0 libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdom4j-java libdoxia-core-java libdoxia-java libdoxia-sitetools-java libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libdynaloader-functions-perl libedit2 libel-api-java libelf1 libencode-locale-perl liberror-prone-java libevent-2.1-7a libevent-core-2.1-7a libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-dirlist-perl libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl libfile-touch-perl libfile-which-perl libfmt-dev libfmt9 libfontbox2-java libfontconfig1 libfop-java libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran-12-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java libhamcrest-java libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu72 libimport-into-perl libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libitext1-java libjansi-java libjaxen-java libjaxp1.3-java libjbig0 libjcommander-java libjetty9-java libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjsoncpp25 libjsoup-java libjsp-api-java libjsr305-java libjtidy-java libksba8 liblcms2-2 libldap2 libllvm15 libltdl-dev libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmaven-archiver-java libmaven-clean-plugin-java libmaven-common-artifact-filters-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-filtering-java libmaven-jar-plugin-java libmaven-parent-java libmaven-plugin-tools-java libmaven-reporting-api-java libmaven-reporting-exec-java libmaven-reporting-impl-java libmaven-resolver-java libmaven-resources-plugin-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven-site-plugin-java libmaven3-core-java libmodule-runtime-perl libmoo-perl libmunge2 libmuparserx-dev libmuparserx4.0.11 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnspr4 libnss3 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libopentest4j-java libopentest4j-reporting-java liboro-java libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libpciaccess0 libpcsclite1 libpicocli-java libpipeline1 libpixman-1-0 libplexus-ant-factory-java libplexus-archiver-java libplexus-bsh-factory-java libplexus-build-api-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-container-default1.5-java libplexus-i18n-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libplexus-velocity-java libpmix-dev libpmix2 libprotobuf-dev libprotobuf-lite32 libprotobuf32 libprotoc32 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libqdox-java libqdox2-java librdmacm1 librhash0 librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libservlet-api-java libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspdlog-dev libspdlog1.10 libssh-4 libssl-dev libsub-override-perl libsub-quote-perl libsurefire-java libthai-data libthai0 libtiff6 libtiledb-dev libtiledb2.13 libtimedate-perl libtool libtry-tiny-perl libuchardet0 libunivocity-parsers-java liburi-perl libuv1 libvelocity-tools-java libwagon-file-java libwagon-http-shaded-java libwagon-provider-api-java libwebp7 libwebsocket-api-java libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxalan2-java libxau6 libxbean-reflect-java libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxml2-utils libxmlgraphics-commons-java libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libxz-java m4 man-db maven maven-debian-helper maven-repo-helper media-types netbase ocl-icd-libopencl1 openjdk-17-jdk openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client patchutils perl-openssl-defaults po-debconf protobuf-compiler python3 python3-minimal python3.11 python3.11-minimal rapidjson-dev sgml-base shared-mime-info testng ubuntu-mono unzip uuid-dev velocity wdiff x11-common zlib1g-dev Suggested packages: ant-doc autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build debtags dh-make adequate at autopkgtest bls-standalone bsd-mailx | mailx check-all-the-things cvs-buildpackage diffoscope disorderfs dose-extra duck elpa-devscripts faketime gnuplot how-can-i-help libauthen-sasl-perl libdbd-pg-perl libfile-desktopentry-perl libnet-smtps-perl libterm-size-perl libyaml-syck-perl mmdebstrap mozilla-devscripts mutt piuparts postgresql-client pristine-lfs quilt ratt reprotest svn-buildpackage w3m debian-keyring equivs libsoap-lite-perl pristine-tar dbus-user-session libpam-systemd pinentry-gnome3 tor gettext-doc libasprintf-dev libgettextpo-dev gfortran-12-multilib gfortran-12-doc libcoarrays-dev parcimonie xloadimage groff lrzip libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc librhino-java libcommons-beanutils-java-doc libcommons-collections3-java-doc libcommons-jexl2-java libcommons-jxpath-java libcommons-vfs-java liblog4j1.2-java libcommons-digester-java-doc libcommons-io-java-doc libcommons-lang-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libmsv-java libxpp2-java libxpp3-java libfmt-doc low-memory-monitor gvfs libcglib-java libdata-dump-perl libjdom1-java libxom-java libjcommander-java-doc jetty9 libjs-jquery-ui-docs libjsoup-java-doc libjsr305-java-doc libjtidy-java-doc liblcms2-utils libtool-doc libcrypt-ssleay-perl liblzma-doc libmaven-file-management-java-doc libmaven-shared-incremental-java-doc libmaven-shared-utils-java-doc liblogback-java openmpi-doc libscalar-number-perl pciutils pcscd libeclipse-jdt-core-java libplexus-utils2-java-doc libplexus-velocity-java-doc libqdox-java-doc junit lm-sensors libssl-doc libxstring-perl libtiledb-doc gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl libxalan2-java-doc libbsf-java libxsltc-java libxerces2-java-doc libxml-commons-resolver1.1-java-doc libxmlgraphics-commons-java-doc m4-doc apparmor less www-browser libmaven-javadoc-plugin-java apt-file licensecheck subversion opencl-icd openjdk-17-demo openjdk-17-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl protobuf-mode-el python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support rapidjson-doc sgml-base-doc zip velocity-doc wdiff-doc Recommended packages: librsvg2-common ant-optional dput | dupload libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl liblist-compare-perl libstring-shellquote-perl licensecheck lintian python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace wget | curl curl | wget | lynx alsa-ucm-conf alsa-topology-conf bzip2-doc dbus libarchive-cpio-perl icc-profiles-free libsaxon-java libgdk-pixbuf2.0-bin libgl1-amber-dri libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin libhtml-format-perl javascript-common libldap-common libnamespace-clean-perl libcoarrays-openmpi-dev publicsuffix libsasl2-modules libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxt-dev libatk-wrapper-java-jni fonts-dejavu-extra xauth libmail-sendmail-perl libyaml-snake-java The following NEW packages will be installed: adwaita-icon-theme ant at-spi2-common autoconf automake autopoint autotools-dev bsdextrautils ca-certificates-java catch2 chrpath cmake cmake-data dctrl-tools debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dirmngr dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran-12 gnupg gnupg-l10n gnupg-utils gpg-wks-client gpg-wks-server gpgsm groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ibverbs-providers intltool-debian java-common java-wrappers javahelper junit4 junit5 libaopalliance-java libapache-pom-java libapiguardian-java libarchive-zip-perl libarchive13 libasm-java libasound2 libasound2-data libatinject-jsr330-api-java libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbatik-java libbrotli1 libbsd0 libbsh-java libbz2-dev libcairo2 libcbor0.8 libcdi-api-java libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommons-beanutils-java libcommons-cli-java libcommons-codec-java libcommons-collections3-java libcommons-compress-java libcommons-configuration-java libcommons-digester-java libcommons-io-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcommons-text-java libcommons-validator-java libcups2 libcurl4 libcurl4-openssl-dev libcurlpp-dev libcurlpp0 libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdom4j-java libdoxia-core-java libdoxia-java libdoxia-sitetools-java libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libdynaloader-functions-perl libedit2 libel-api-java libelf1 libencode-locale-perl liberror-prone-java libevent-2.1-7a libevent-core-2.1-7a libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-dirlist-perl libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl libfile-touch-perl libfile-which-perl libfmt-dev libfmt9 libfontbox2-java libfontconfig1 libfop-java libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran-12-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java libhamcrest-java libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu72 libimport-into-perl libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libitext1-java libjansi-java libjaxen-java libjaxp1.3-java libjbig0 libjcommander-java libjetty9-java libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjsoncpp25 libjsoup-java libjsp-api-java libjsr305-java libjtidy-java libksba8 liblcms2-2 libldap2 libllvm15 libltdl-dev libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmaven-archiver-java libmaven-clean-plugin-java libmaven-common-artifact-filters-java libmaven-compiler-plugin-java libmaven-file-management-java libmaven-filtering-java libmaven-jar-plugin-java libmaven-parent-java libmaven-plugin-tools-java libmaven-reporting-api-java libmaven-reporting-exec-java libmaven-reporting-impl-java libmaven-resolver-java libmaven-resources-plugin-java libmaven-shared-incremental-java libmaven-shared-io-java libmaven-shared-utils-java libmaven-site-plugin-java libmaven3-core-java libmodule-runtime-perl libmoo-perl libmunge2 libmuparserx-dev libmuparserx4.0.11 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnspr4 libnss3 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libopentest4j-java libopentest4j-reporting-java liboro-java libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libpciaccess0 libpcsclite1 libpicocli-java libpipeline1 libpixman-1-0 libplexus-ant-factory-java libplexus-archiver-java libplexus-bsh-factory-java libplexus-build-api-java libplexus-cipher-java libplexus-classworlds-java libplexus-compiler-java libplexus-component-annotations-java libplexus-container-default-java libplexus-container-default1.5-java libplexus-i18n-java libplexus-interpolation-java libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java libplexus-utils2-java libplexus-velocity-java libpmix-dev libpmix2 libprotobuf-dev libprotobuf-lite32 libprotobuf32 libprotoc32 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libqdox-java libqdox2-java librdmacm1 librhash0 librole-tiny-perl librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libservlet-api-java libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspdlog-dev libspdlog1.10 libssh-4 libssl-dev libsub-override-perl libsub-quote-perl libsurefire-java libthai-data libthai0 libtiff6 libtiledb-dev libtiledb2.13 libtimedate-perl libtool libtry-tiny-perl libuchardet0 libunivocity-parsers-java liburi-perl libuv1 libvelocity-tools-java libwagon-file-java libwagon-http-shaded-java libwagon-provider-api-java libwebp7 libwebsocket-api-java libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxalan2-java libxau6 libxbean-reflect-java libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxml2-utils libxmlgraphics-commons-java libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libxz-java m4 man-db maven maven-debian-helper maven-repo-helper media-types netbase ocl-icd-libopencl1 openjdk-17-jdk openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client patchutils perl-openssl-defaults po-debconf protobuf-compiler python3 python3-minimal python3.11 python3.11-minimal rapidjson-dev sbuild-build-depends-main-dummy sgml-base shared-mime-info testng ubuntu-mono unzip uuid-dev velocity wdiff x11-common zlib1g-dev 0 upgraded, 396 newly installed, 0 to remove and 0 not upgraded. Need to get 406 MB of archives. After this operation, 978 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [798 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main s390x libpython3.11-minimal s390x 3.11.2-6 [831 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main s390x libexpat1 s390x 2.5.0-1 [81.6 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main s390x python3.11-minimal s390x 3.11.2-6 [2124 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x python3-minimal s390x 3.11.2-1 [24.6 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main s390x media-types all 10.0.0 [25.8 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main s390x libpython3.11-stdlib s390x 3.11.2-6 [1875 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main s390x python3.11 s390x 3.11.2-6 [565 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main s390x libpython3-stdlib s390x 3.11.2-1 [7238 B] Get:10 http://ftpmaster.internal/ubuntu lunar/main s390x python3 s390x 3.11.2-1 [22.9 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main s390x sgml-base all 1.31 [11.4 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main s390x libbsd0 s390x 0.11.7-4 [42.5 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main s390x libdbus-1-3 s390x 1.14.4-1ubuntu1 [198 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main s390x libelf1 s390x 0.188-2.1 [56.7 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main s390x libfribidi0 s390x 1.0.8-2.1ubuntu1 [27.1 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libglib2.0-0 s390x 2.76.0-1 [1461 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main s390x libicu72 s390x 72.1-3ubuntu1 [10.7 MB] Get:18 http://ftpmaster.internal/ubuntu lunar/main s390x libxml2 s390x 2.9.14+dfsg-1.1build2 [718 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main s390x netbase all 6.4 [13.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main s390x shared-mime-info s390x 2.2-1 [459 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main s390x bsdextrautils s390x 2.38.1-4ubuntu1 [71.3 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic-mgc s390x 1:5.44-3 [296 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic1 s390x 1:5.44-3 [84.5 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main s390x file s390x 1:5.44-3 [21.7 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main s390x gettext-base s390x 0.21-11 [36.4 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main s390x libuchardet0 s390x 0.0.7-1build2 [76.4 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main s390x groff-base s390x 1.22.4-10 [914 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main s390x libcbor0.8 s390x 0.8.0-2ubuntu1 [23.9 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main s390x libdrm-common all 2.4.114-1 [5940 B] Get:30 http://ftpmaster.internal/ubuntu lunar/main s390x libdrm2 s390x 2.4.114-1 [38.2 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main s390x libedit2 s390x 3.1-20221030-2 [95.3 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main s390x libfido2-1 s390x 1.12.0-2 [78.6 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main s390x libnghttp2-14 s390x 1.52.0-1 [70.9 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main s390x libnuma1 s390x 2.0.16-1 [22.7 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main s390x libpipeline1 s390x 1.5.7-1 [23.4 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main s390x libpsl5 s390x 0.21.2-1 [59.1 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main s390x libuv1 s390x 1.44.2-1 [87.4 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main s390x libxau6 s390x 1:1.0.9-1build5 [7522 B] Get:39 http://ftpmaster.internal/ubuntu lunar/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu5 [10.8 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb1 s390x 1.15-1 [48.3 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main s390x libx11-data all 2:1.8.4-2 [118 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main s390x libx11-6 s390x 2:1.8.4-2 [640 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main s390x libxext6 s390x 2:1.3.4-1build1 [30.5 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main s390x man-db s390x 2.11.2-1 [1216 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main s390x openssh-client s390x 1:9.0p1-1ubuntu8 [811 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main s390x hicolor-icon-theme all 0.17-2 [9976 B] Get:47 http://ftpmaster.internal/ubuntu lunar/main s390x libgdk-pixbuf2.0-common all 2.42.10+dfsg-1build1 [5496 B] Get:48 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] Get:50 http://ftpmaster.internal/ubuntu lunar/main s390x libdeflate0 s390x 1.15-1 [36.6 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main s390x libjbig0 s390x 2.1-6ubuntu1 [29.7 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main s390x libwebp7 s390x 1.2.4-0.1build1 [171 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main s390x libtiff6 s390x 4.5.0-4ubuntu1 [186 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main s390x libgdk-pixbuf-2.0-0 s390x 2.42.10+dfsg-1build1 [144 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main s390x gtk-update-icon-cache s390x 3.24.37-1ubuntu1 [48.1 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main s390x humanity-icon-theme all 0.6.16 [1282 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main s390x ubuntu-mono all 20.10-0ubuntu2 [153 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main s390x adwaita-icon-theme all 41.0-1ubuntu1 [3444 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main s390x ca-certificates-java all 20230103ubuntu1 [11.7 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main s390x java-common all 0.74 [6350 B] Get:61 http://ftpmaster.internal/ubuntu lunar/main s390x libavahi-common-data s390x 0.8-6ubuntu1 [23.8 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main s390x libavahi-common3 s390x 0.8-6ubuntu1 [22.9 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main s390x libavahi-client3 s390x 0.8-6ubuntu1 [26.2 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main s390x libcups2 s390x 2.4.2-1ubuntu4 [249 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main s390x liblcms2-2 s390x 2.14-2 [155 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main s390x libbrotli1 s390x 1.0.9-2build8 [312 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main s390x libfreetype6 s390x 2.12.1+dfsg-4 [384 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main s390x fonts-dejavu-core all 2.37-6 [1137 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main s390x fontconfig-config s390x 2.14.1-3ubuntu3 [34.8 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main s390x libfontconfig1 s390x 2.14.1-3ubuntu3 [136 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main s390x libnspr4 s390x 2:4.35-1 [117 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main s390x libnss3 s390x 2:3.87.1-1 [1324 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main s390x libasound2-data all 1.2.8-1build1 [19.4 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main s390x libasound2 s390x 1.2.8-1build1 [379 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main s390x libgraphite2-3 s390x 1.3.14-1build2 [68.1 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main s390x libharfbuzz0b s390x 6.0.0+dfsg-3build1 [397 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main s390x libpcsclite1 s390x 1.9.9-1 [18.9 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x openjdk-17-jre-headless s390x 17.0.6+10-1ubuntu2 [45.0 MB] Get:79 http://ftpmaster.internal/ubuntu lunar/main s390x default-jre-headless s390x 2:1.17-74 [2828 B] Get:80 http://ftpmaster.internal/ubuntu lunar/universe s390x ant all 1.10.13-1 [2147 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main s390x at-spi2-common all 2.47.1-1 [7426 B] Get:82 http://ftpmaster.internal/ubuntu lunar/main s390x m4 s390x 1.4.19-3 [243 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main s390x autoconf all 2.71-3 [339 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main s390x autopoint all 0.21-11 [420 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/universe s390x catch2 s390x 2.13.10-1 [473 kB] Get:88 http://ftpmaster.internal/ubuntu lunar/universe s390x chrpath s390x 0.16-2 [13.2 kB] Get:89 http://ftpmaster.internal/ubuntu lunar/main s390x libarchive13 s390x 3.6.2-1ubuntu1 [372 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main s390x libsasl2-modules-db s390x 2.1.28+dfsg-10 [20.1 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/main s390x libsasl2-2 s390x 2.1.28+dfsg-10 [57.1 kB] Get:92 http://ftpmaster.internal/ubuntu lunar/main s390x libldap2 s390x 2.6.3+dfsg-1~exp1ubuntu2 [179 kB] Get:93 http://ftpmaster.internal/ubuntu lunar/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build4 [56.4 kB] Get:94 http://ftpmaster.internal/ubuntu lunar/main s390x libssh-4 s390x 0.10.4-2 [173 kB] Get:95 http://ftpmaster.internal/ubuntu lunar/main s390x libcurl4 s390x 7.88.1-6ubuntu1 [299 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/main s390x libjsoncpp25 s390x 1.9.5-4 [74.8 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/main s390x librhash0 s390x 1.4.3-3 [128 kB] Get:98 http://ftpmaster.internal/ubuntu lunar/main s390x cmake-data all 3.25.1-1 [2049 kB] Get:99 http://ftpmaster.internal/ubuntu lunar/main s390x cmake s390x 3.25.1-1 [4899 kB] Get:100 http://ftpmaster.internal/ubuntu lunar/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB] Get:101 http://ftpmaster.internal/ubuntu lunar/main s390x libdebhelper-perl all 13.11.4ubuntu3 [66.1 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/main s390x libtool all 2.4.7-5 [166 kB] Get:103 http://ftpmaster.internal/ubuntu lunar/main s390x dh-autoreconf all 20 [16.1 kB] Get:104 http://ftpmaster.internal/ubuntu lunar/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:105 http://ftpmaster.internal/ubuntu lunar/main s390x libsub-override-perl all 0.09-4 [8706 B] Get:106 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:107 http://ftpmaster.internal/ubuntu lunar/main s390x dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:108 http://ftpmaster.internal/ubuntu lunar/main s390x libdw1 s390x 0.188-2.1 [247 kB] Get:109 http://ftpmaster.internal/ubuntu lunar/main s390x debugedit s390x 1:5.0-5 [47.5 kB] Get:110 http://ftpmaster.internal/ubuntu lunar/main s390x dwz s390x 0.15-1 [108 kB] Get:111 http://ftpmaster.internal/ubuntu lunar/main s390x gettext s390x 0.21-11 [851 kB] Get:112 http://ftpmaster.internal/ubuntu lunar/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:113 http://ftpmaster.internal/ubuntu lunar/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:114 http://ftpmaster.internal/ubuntu lunar/main s390x debhelper all 13.11.4ubuntu3 [925 kB] Get:115 http://ftpmaster.internal/ubuntu lunar/main s390x libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] Get:116 http://ftpmaster.internal/ubuntu lunar/main s390x libatk1.0-0 s390x 2.47.1-1 [52.3 kB] Get:117 http://ftpmaster.internal/ubuntu lunar/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB] Get:118 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB] Get:119 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-shm0 s390x 1.15-1 [5782 B] Get:120 http://ftpmaster.internal/ubuntu lunar/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB] Get:121 http://ftpmaster.internal/ubuntu lunar/main s390x libcairo2 s390x 1.16.0-7 [493 kB] Get:122 http://ftpmaster.internal/ubuntu lunar/main s390x fontconfig s390x 2.14.1-3ubuntu3 [186 kB] Get:123 http://ftpmaster.internal/ubuntu lunar/main s390x libthai-data all 0.1.29-1build1 [162 kB] Get:124 http://ftpmaster.internal/ubuntu lunar/main s390x libdatrie1 s390x 0.2.13-2 [19.9 kB] Get:125 http://ftpmaster.internal/ubuntu lunar/main s390x libthai0 s390x 0.1.29-1build1 [20.0 kB] Get:126 http://ftpmaster.internal/ubuntu lunar/main s390x libpango-1.0-0 s390x 1.50.12+ds-1 [219 kB] Get:127 http://ftpmaster.internal/ubuntu lunar/main s390x libpangoft2-1.0-0 s390x 1.50.12+ds-1 [42.8 kB] Get:128 http://ftpmaster.internal/ubuntu lunar/main s390x libpangocairo-1.0-0 s390x 1.50.12+ds-1 [28.1 kB] Get:129 http://ftpmaster.internal/ubuntu lunar/main s390x libxcomposite1 s390x 1:0.4.5-1build2 [6952 B] Get:130 http://ftpmaster.internal/ubuntu lunar/main s390x libxfixes3 s390x 1:6.0.0-2 [10.6 kB] Get:131 http://ftpmaster.internal/ubuntu lunar/main s390x libxcursor1 s390x 1:1.2.1-1 [22.2 kB] Get:132 http://ftpmaster.internal/ubuntu lunar/main s390x libxdamage1 s390x 1:1.1.6-1 [5810 B] Get:133 http://ftpmaster.internal/ubuntu lunar/main s390x libxi6 s390x 2:1.8-1build1 [31.0 kB] Get:134 http://ftpmaster.internal/ubuntu lunar/main s390x libxinerama1 s390x 2:1.1.4-3 [7110 B] Get:135 http://ftpmaster.internal/ubuntu lunar/main s390x libxrandr2 s390x 2:1.5.2-2 [19.5 kB] Get:136 http://ftpmaster.internal/ubuntu lunar/main s390x libgtk2.0-0 s390x 2.24.33-2ubuntu2 [1944 kB] Get:137 http://ftpmaster.internal/ubuntu lunar/main s390x libglvnd0 s390x 1.6.0-1 [110 kB] Get:138 http://ftpmaster.internal/ubuntu lunar/main s390x libglapi-mesa s390x 22.3.6-1ubuntu2 [64.6 kB] Get:139 http://ftpmaster.internal/ubuntu lunar/main s390x libx11-xcb1 s390x 2:1.8.4-2 [7782 B] Get:140 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-dri2-0 s390x 1.15-1 [7426 B] Get:141 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-dri3-0 s390x 1.15-1 [7270 B] Get:142 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-glx0 s390x 1.15-1 [25.8 kB] Get:143 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-present0 s390x 1.15-1 [5752 B] Get:144 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-randr0 s390x 1.15-1 [19.0 kB] Get:145 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-sync1 s390x 1.15-1 [9392 B] Get:146 http://ftpmaster.internal/ubuntu lunar/main s390x libxcb-xfixes0 s390x 1.15-1 [10.5 kB] Get:147 http://ftpmaster.internal/ubuntu lunar/main s390x libxshmfence1 s390x 1.3-1build4 [5334 B] Get:148 http://ftpmaster.internal/ubuntu lunar/main s390x libxxf86vm1 s390x 1:1.1.4-1build3 [9900 B] Get:149 http://ftpmaster.internal/ubuntu lunar/main s390x libdrm-amdgpu1 s390x 2.4.114-1 [19.8 kB] Get:150 http://ftpmaster.internal/ubuntu lunar/main s390x libdrm-nouveau2 s390x 2.4.114-1 [17.1 kB] Get:151 http://ftpmaster.internal/ubuntu lunar/main s390x libdrm-radeon1 s390x 2.4.114-1 [21.3 kB] Get:152 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libllvm15 s390x 1:15.0.7-3 [29.1 MB] Get:153 http://ftpmaster.internal/ubuntu lunar/main s390x libsensors-config all 1:3.6.0-7ubuntu1 [5274 B] Get:154 http://ftpmaster.internal/ubuntu lunar/main s390x libsensors5 s390x 1:3.6.0-7ubuntu1 [25.3 kB] Get:155 http://ftpmaster.internal/ubuntu lunar/main s390x libgl1-mesa-dri s390x 22.3.6-1ubuntu2 [5496 kB] Get:156 http://ftpmaster.internal/ubuntu lunar/main s390x libglx-mesa0 s390x 22.3.6-1ubuntu2 [166 kB] Get:157 http://ftpmaster.internal/ubuntu lunar/main s390x libglx0 s390x 1.6.0-1 [28.3 kB] Get:158 http://ftpmaster.internal/ubuntu lunar/main s390x libgl1 s390x 1.6.0-1 [137 kB] Get:159 http://ftpmaster.internal/ubuntu lunar/main s390x libgif7 s390x 5.2.1-2.5 [34.2 kB] Get:160 http://ftpmaster.internal/ubuntu lunar/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:161 http://ftpmaster.internal/ubuntu lunar/main s390x libxtst6 s390x 2:1.2.3-1.1 [13.4 kB] Get:162 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x openjdk-17-jre s390x 17.0.6+10-1ubuntu2 [178 kB] Get:163 http://ftpmaster.internal/ubuntu lunar/main s390x default-jre s390x 2:1.17-74 [910 B] Get:164 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x openjdk-17-jdk-headless s390x 17.0.6+10-1ubuntu2 [182 MB] Get:165 http://ftpmaster.internal/ubuntu lunar/main s390x default-jdk-headless s390x 2:1.17-74 [952 B] Get:166 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x openjdk-17-jdk s390x 17.0.6+10-1ubuntu2 [4534 kB] Get:167 http://ftpmaster.internal/ubuntu lunar/main s390x default-jdk s390x 2:1.17-74 [914 B] Get:168 http://ftpmaster.internal/ubuntu lunar/main s390x libksba8 s390x 1.6.3-2 [113 kB] Get:169 http://ftpmaster.internal/ubuntu lunar/main s390x dirmngr s390x 2.2.40-1ubuntu2 [301 kB] Get:170 http://ftpmaster.internal/ubuntu lunar/main s390x gnupg-l10n all 2.2.40-1ubuntu2 [53.5 kB] Get:171 http://ftpmaster.internal/ubuntu lunar/main s390x gnupg-utils s390x 2.2.40-1ubuntu2 [302 kB] Get:172 http://ftpmaster.internal/ubuntu lunar/main s390x gpg-wks-client s390x 2.2.40-1ubuntu2 [67.1 kB] Get:173 http://ftpmaster.internal/ubuntu lunar/main s390x gpg-wks-server s390x 2.2.40-1ubuntu2 [59.9 kB] Get:174 http://ftpmaster.internal/ubuntu lunar/main s390x gpgsm s390x 2.2.40-1ubuntu2 [201 kB] Get:175 http://ftpmaster.internal/ubuntu lunar/main s390x gnupg all 2.2.40-1ubuntu2 [319 kB] Get:176 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-dirlist-perl all 0.05-3 [7286 B] Get:177 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-which-perl all 1.27-2 [12.5 kB] Get:178 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-homedir-perl all 1.006-2 [37.0 kB] Get:179 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-touch-perl all 0.12-2 [7498 B] Get:180 http://ftpmaster.internal/ubuntu lunar/main s390x libio-pty-perl s390x 1:1.17-1 [32.0 kB] Get:181 http://ftpmaster.internal/ubuntu lunar/main s390x libipc-run-perl all 20220807.0-1 [92.6 kB] Get:182 http://ftpmaster.internal/ubuntu lunar/main s390x libclass-method-modifiers-perl all 2.14-1 [16.2 kB] Get:183 http://ftpmaster.internal/ubuntu lunar/main s390x libclass-xsaccessor-perl s390x 1.19-4build1 [33.8 kB] Get:184 http://ftpmaster.internal/ubuntu lunar/main s390x libb-hooks-op-check-perl s390x 0.22-2build1 [9532 B] Get:185 http://ftpmaster.internal/ubuntu lunar/main s390x libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:186 http://ftpmaster.internal/ubuntu lunar/main s390x libdevel-callchecker-perl s390x 0.008-2 [13.8 kB] Get:187 http://ftpmaster.internal/ubuntu lunar/main s390x libparams-classify-perl s390x 0.015-2build2 [20.7 kB] Get:188 http://ftpmaster.internal/ubuntu lunar/main s390x libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:189 http://ftpmaster.internal/ubuntu lunar/main s390x libimport-into-perl all 1.002005-2 [10.7 kB] Get:190 http://ftpmaster.internal/ubuntu lunar/main s390x librole-tiny-perl all 2.002004-1 [16.3 kB] Get:191 http://ftpmaster.internal/ubuntu lunar/main s390x libsub-quote-perl all 2.006008-1ubuntu1 [20.7 kB] Get:192 http://ftpmaster.internal/ubuntu lunar/main s390x libmoo-perl all 2.005005-1 [47.4 kB] Get:193 http://ftpmaster.internal/ubuntu lunar/main s390x libencode-locale-perl all 1.05-3 [11.6 kB] Get:194 http://ftpmaster.internal/ubuntu lunar/main s390x libtimedate-perl all 2.3300-2 [34.0 kB] Get:195 http://ftpmaster.internal/ubuntu lunar/main s390x libhttp-date-perl all 6.05-2 [9946 B] Get:196 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-listing-perl all 6.15-1 [11.5 kB] Get:197 http://ftpmaster.internal/ubuntu lunar/main s390x libhtml-tagset-perl all 3.20-6 [11.3 kB] Get:198 http://ftpmaster.internal/ubuntu lunar/main s390x liburi-perl all 5.17-1ubuntu1 [80.3 kB] Get:199 http://ftpmaster.internal/ubuntu lunar/main s390x libhtml-parser-perl s390x 3.81-1 [86.8 kB] Get:200 http://ftpmaster.internal/ubuntu lunar/main s390x libhtml-tree-perl all 5.07-3 [200 kB] Get:201 http://ftpmaster.internal/ubuntu lunar/main s390x libclone-perl s390x 0.46-1 [10.7 kB] Get:202 http://ftpmaster.internal/ubuntu lunar/main s390x libio-html-perl all 1.004-3 [15.9 kB] Get:203 http://ftpmaster.internal/ubuntu lunar/main s390x liblwp-mediatypes-perl all 6.04-2 [20.1 kB] Get:204 http://ftpmaster.internal/ubuntu lunar/main s390x libhttp-message-perl all 6.44-1 [77.4 kB] Get:205 http://ftpmaster.internal/ubuntu lunar/main s390x libhttp-cookies-perl all 6.10-1 [18.4 kB] Get:206 http://ftpmaster.internal/ubuntu lunar/main s390x libhttp-negotiate-perl all 6.01-2 [12.4 kB] Get:207 http://ftpmaster.internal/ubuntu lunar/main s390x perl-openssl-defaults s390x 7 [7536 B] Get:208 http://ftpmaster.internal/ubuntu lunar/main s390x libnet-ssleay-perl s390x 1.92-2build2 [294 kB] Get:209 http://ftpmaster.internal/ubuntu lunar/main s390x libio-socket-ssl-perl all 2.081-2 [196 kB] Get:210 http://ftpmaster.internal/ubuntu lunar/main s390x libnet-http-perl all 6.22-1 [23.2 kB] Get:211 http://ftpmaster.internal/ubuntu lunar/main s390x liblwp-protocol-https-perl all 6.10-1 [10.9 kB] Get:212 http://ftpmaster.internal/ubuntu lunar/main s390x libtry-tiny-perl all 0.31-2 [20.8 kB] Get:213 http://ftpmaster.internal/ubuntu lunar/main s390x libwww-robotrules-perl all 6.02-1 [12.6 kB] Get:214 http://ftpmaster.internal/ubuntu lunar/main s390x libwww-perl all 6.67-1 [141 kB] Get:215 http://ftpmaster.internal/ubuntu lunar/main s390x patchutils s390x 0.4.2-1build2 [77.3 kB] Get:216 http://ftpmaster.internal/ubuntu lunar/main s390x wdiff s390x 1.2.2-5 [28.8 kB] Get:217 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x devscripts s390x 2.23.3ubuntu1 [1074 kB] Get:218 http://ftpmaster.internal/ubuntu lunar/main s390x libgfortran5 s390x 13-20230305-1ubuntu1 [566 kB] Get:219 http://ftpmaster.internal/ubuntu lunar/main s390x libgfortran-12-dev s390x 12.2.0-17ubuntu1 [517 kB] Get:220 http://ftpmaster.internal/ubuntu lunar/main s390x gfortran-12 s390x 12.2.0-17ubuntu1 [8574 kB] Get:221 http://ftpmaster.internal/ubuntu lunar/main s390x libnl-3-200 s390x 3.7.0-0.2 [56.3 kB] Get:222 http://ftpmaster.internal/ubuntu lunar/main s390x libnl-route-3-200 s390x 3.7.0-0.2 [180 kB] Get:223 http://ftpmaster.internal/ubuntu lunar/main s390x libibverbs1 s390x 44.0-2 [64.3 kB] Get:224 http://ftpmaster.internal/ubuntu lunar/main s390x ibverbs-providers s390x 44.0-2 [350 kB] Get:225 http://ftpmaster.internal/ubuntu lunar/main s390x unzip s390x 6.0-27ubuntu1 [169 kB] Get:226 http://ftpmaster.internal/ubuntu lunar/universe s390x java-wrappers all 0.4 [8662 B] Get:227 http://ftpmaster.internal/ubuntu lunar/universe s390x javahelper all 0.78 [86.2 kB] Get:228 http://ftpmaster.internal/ubuntu lunar/universe s390x libhamcrest-java all 2.2-1 [117 kB] Get:229 http://ftpmaster.internal/ubuntu lunar/universe s390x junit4 all 4.13.2-3 [346 kB] Get:230 http://ftpmaster.internal/ubuntu lunar/universe s390x libapiguardian-java all 1.1.2-1 [4598 B] Get:231 http://ftpmaster.internal/ubuntu lunar/universe s390x libopentest4j-java all 1.2.0-4 [9396 B] Get:232 http://ftpmaster.internal/ubuntu lunar/universe s390x libopentest4j-reporting-java all 0.1.0-M1-2 [49.3 kB] Get:233 http://ftpmaster.internal/ubuntu lunar/universe s390x libpicocli-java all 4.6.2-2 [387 kB] Get:234 http://ftpmaster.internal/ubuntu lunar/universe s390x libunivocity-parsers-java all 2.9.1-1 [394 kB] Get:235 http://ftpmaster.internal/ubuntu lunar/universe s390x junit5 all 5.9.2-1 [2391 kB] Get:236 http://ftpmaster.internal/ubuntu lunar/universe s390x libapache-pom-java all 29-2 [5284 B] Get:237 http://ftpmaster.internal/ubuntu lunar/universe s390x libasm-java all 9.4-1 [386 kB] Get:238 http://ftpmaster.internal/ubuntu lunar/universe s390x libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] Get:239 http://ftpmaster.internal/ubuntu lunar/universe s390x libjaxp1.3-java all 1.3.05-6 [227 kB] Get:240 http://ftpmaster.internal/ubuntu lunar/universe s390x libxml-commons-external-java all 1.4.01-5 [240 kB] Get:241 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-parent-java all 56-1 [10.7 kB] Get:242 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-io-java all 2.11.0-2 [297 kB] Get:243 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-logging-java all 1.2-3 [59.9 kB] Get:244 http://ftpmaster.internal/ubuntu lunar/universe s390x libxmlgraphics-commons-java all 2.8-2 [619 kB] Get:245 http://ftpmaster.internal/ubuntu lunar/universe s390x libbatik-java all 1.16+dfsg-1 [3905 kB] Get:246 http://ftpmaster.internal/ubuntu lunar/universe s390x libbsh-java all 2.0b4-20 [289 kB] Get:247 http://ftpmaster.internal/ubuntu lunar/main s390x libbz2-dev s390x 1.0.8-5build1 [33.8 kB] Get:248 http://ftpmaster.internal/ubuntu lunar/universe s390x libgeronimo-interceptor-3.0-spec-java all 1.0.1-4fakesync [8616 B] Get:249 http://ftpmaster.internal/ubuntu lunar/universe s390x libcdi-api-java all 1.2-3 [54.3 kB] Get:250 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-collections3-java all 3.2.2-2 [525 kB] Get:251 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-beanutils-java all 1.9.4-1 [226 kB] Get:252 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-cli-java all 1.5.0-1 [59.3 kB] Get:253 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-codec-java all 1.15-1 [291 kB] Get:254 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-compress-java all 1.22-1 [590 kB] Get:255 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-lang-java all 2.6-10 [270 kB] Get:256 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-configuration-java all 1.10-6 [342 kB] Get:257 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-digester-java all 1.8.1-5 [167 kB] Get:258 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-lang3-java all 3.12.0-2 [532 kB] Get:259 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-utils2-java all 3.4.2-1 [256 kB] Get:260 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-io-java all 3.3.1-2 [64.4 kB] Get:261 http://ftpmaster.internal/ubuntu lunar/universe s390x libslf4j-java all 1.7.32-1 [141 kB] Get:262 http://ftpmaster.internal/ubuntu lunar/main s390x libsnappy1v5 s390x 1.1.9-3 [27.7 kB] Get:263 http://ftpmaster.internal/ubuntu lunar/universe s390x libsnappy-jni s390x 1.1.8.3-1 [6556 B] Get:264 http://ftpmaster.internal/ubuntu lunar/universe s390x libsnappy-java all 1.1.8.3-1 [93.9 kB] Get:265 http://ftpmaster.internal/ubuntu lunar/universe s390x libxz-java all 1.9-1 [140 kB] Get:266 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-archiver-java all 4.6.1-1 [185 kB] Get:267 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-interpolation-java all 1.26-1 [76.8 kB] Get:268 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-archiver-java all 3.6.0-1 [25.3 kB] Get:269 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-shared-utils-java all 3.3.4-1 [137 kB] Get:270 http://ftpmaster.internal/ubuntu lunar/universe s390x libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.2 kB] Get:271 http://ftpmaster.internal/ubuntu lunar/universe s390x libaopalliance-java all 20070526-7 [8166 B] Get:272 http://ftpmaster.internal/ubuntu lunar/universe s390x liberror-prone-java all 2.18.0-1 [22.5 kB] Get:273 http://ftpmaster.internal/ubuntu lunar/universe s390x libjsr305-java all 0.1~+svn49-11 [27.0 kB] Get:274 http://ftpmaster.internal/ubuntu lunar/universe s390x libguava-java all 31.1-1 [2598 kB] Get:275 http://ftpmaster.internal/ubuntu lunar/universe s390x libguice-java all 4.2.3-2 [1434 kB] Get:276 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-parent-java all 35-1 [5810 B] Get:277 http://ftpmaster.internal/ubuntu lunar/universe s390x libwagon-provider-api-java all 3.5.3-1 [47.9 kB] Get:278 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-resolver-java all 1.6.3-1 [544 kB] Get:279 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-cipher-java all 2.0-1 [14.7 kB] Get:280 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-classworlds-java all 2.7.0-1 [50.0 kB] Get:281 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-component-annotations-java all 2.1.1-1 [6550 B] Get:282 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-sec-dispatcher-java all 2.0-3 [28.1 kB] Get:283 http://ftpmaster.internal/ubuntu lunar/universe s390x libsisu-inject-java all 0.3.4-2 [347 kB] Get:284 http://ftpmaster.internal/ubuntu lunar/universe s390x libsisu-plexus-java all 0.3.4-3 [181 kB] Get:285 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven3-core-java all 3.8.7-1 [1565 kB] Get:286 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-shared-io-java all 3.0.0-4 [32.6 kB] Get:287 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:288 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-jar-plugin-java all 3.3.0-2 [23.9 kB] Get:289 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-text-java all 1.10.0-1 [211 kB] Get:290 http://ftpmaster.internal/ubuntu lunar/universe s390x libcommons-validator-java all 1:1.7-1 [178 kB] Get:291 http://ftpmaster.internal/ubuntu lunar/main s390x libcurl4-openssl-dev s390x 7.88.1-6ubuntu1 [405 kB] Get:292 http://ftpmaster.internal/ubuntu lunar/universe s390x libjaxen-java all 1.1.6-4 [214 kB] Get:293 http://ftpmaster.internal/ubuntu lunar/universe s390x libdom4j-java all 2.1.3-2 [307 kB] Get:294 http://ftpmaster.internal/ubuntu lunar/universe s390x libhttpcore-java all 4.4.16-1 [612 kB] Get:295 http://ftpmaster.internal/ubuntu lunar/universe s390x libhttpclient-java all 4.5.14-1 [1241 kB] Get:296 http://ftpmaster.internal/ubuntu lunar/universe s390x libdoxia-core-java all 1.12.0-1 [212 kB] Get:297 http://ftpmaster.internal/ubuntu lunar/universe s390x libfontbox2-java all 2.0.27-2 [1506 kB] Get:298 http://ftpmaster.internal/ubuntu lunar/universe s390x libqdox-java all 1.12.1-3 [172 kB] Get:299 http://ftpmaster.internal/ubuntu lunar/universe s390x libfop-java all 1:2.8-2 [10.2 MB] Get:300 http://ftpmaster.internal/ubuntu lunar/universe s390x libitext1-java all 1.4-7 [1257 kB] Get:301 http://ftpmaster.internal/ubuntu lunar/universe s390x libxbean-reflect-java all 4.5-8 [132 kB] Get:302 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-container-default-java all 2.1.1-1 [191 kB] Get:303 http://ftpmaster.internal/ubuntu lunar/universe s390x libdoxia-java all 1.12.0-1 [458 kB] Get:304 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-reporting-api-java all 3.1.1-1 [7172 B] Get:305 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-i18n-java all 1.0-beta-10-6 [12.9 kB] Get:306 http://ftpmaster.internal/ubuntu lunar/universe s390x velocity all 1.7-6 [428 kB] Get:307 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-velocity-java all 1.2-3.1 [10.5 kB] Get:308 http://ftpmaster.internal/ubuntu lunar/universe s390x liboro-java all 2.0.8a-14 [65.0 kB] Get:309 http://ftpmaster.internal/ubuntu lunar/universe s390x libvelocity-tools-java all 2.0-8 [308 kB] Get:310 http://ftpmaster.internal/ubuntu lunar/universe s390x libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] Get:311 http://ftpmaster.internal/ubuntu lunar/universe s390x libxerces2-java all 2.12.2-1 [1430 kB] Get:312 http://ftpmaster.internal/ubuntu lunar/universe s390x libxalan2-java all 2.7.2-4 [3416 kB] Get:313 http://ftpmaster.internal/ubuntu lunar/universe s390x libdoxia-sitetools-java all 1.11.1-1 [202 kB] Get:314 http://ftpmaster.internal/ubuntu lunar/universe s390x libel-api-java all 3.0.0-3 [64.9 kB] Get:315 http://ftpmaster.internal/ubuntu lunar/main s390x libevent-2.1-7a s390x 2.1.12-stable-5ubuntu1 [137 kB] Get:316 http://ftpmaster.internal/ubuntu lunar/main s390x libevent-core-2.1-7a s390x 2.1.12-stable-5ubuntu1 [88.2 kB] Get:317 http://ftpmaster.internal/ubuntu lunar/main s390x libevent-extra-2.1-7 s390x 2.1.12-stable-5ubuntu1 [61.0 kB] Get:318 http://ftpmaster.internal/ubuntu lunar/main s390x libevent-pthreads-2.1-7 s390x 2.1.12-stable-5ubuntu1 [7574 B] Get:319 http://ftpmaster.internal/ubuntu lunar/main s390x libevent-openssl-2.1-7 s390x 2.1.12-stable-5ubuntu1 [14.6 kB] Get:320 http://ftpmaster.internal/ubuntu lunar/main s390x libevent-dev s390x 2.1.12-stable-5ubuntu1 [268 kB] Get:321 http://ftpmaster.internal/ubuntu lunar/main s390x librdmacm1 s390x 44.0-2 [67.5 kB] Get:322 http://ftpmaster.internal/ubuntu lunar/universe s390x libfabric1 s390x 1.17.0-3 [513 kB] Get:323 http://ftpmaster.internal/ubuntu lunar/universe s390x libfmt9 s390x 9.1.0+ds1-2 [62.4 kB] Get:324 http://ftpmaster.internal/ubuntu lunar/universe s390x libhwloc15 s390x 2.9.0-1 [148 kB] Get:325 http://ftpmaster.internal/ubuntu lunar/universe s390x libjansi-java all 2.4.0-2 [89.4 kB] Get:326 http://ftpmaster.internal/ubuntu lunar/universe s390x libjcommander-java all 1.71-4 [68.5 kB] Get:327 http://ftpmaster.internal/ubuntu lunar/universe s390x libjsp-api-java all 2.3.4-3 [53.7 kB] Get:328 http://ftpmaster.internal/ubuntu lunar/universe s390x libservlet-api-java all 4.0.1-2 [81.0 kB] Get:329 http://ftpmaster.internal/ubuntu lunar/universe s390x libwebsocket-api-java all 1.1-2 [40.1 kB] Get:330 http://ftpmaster.internal/ubuntu lunar/universe s390x libjetty9-java all 9.4.50-3 [2787 kB] Get:331 http://ftpmaster.internal/ubuntu lunar/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:332 http://ftpmaster.internal/ubuntu lunar/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:333 http://ftpmaster.internal/ubuntu lunar/universe s390x libjsoup-java all 1.15.3-1 [407 kB] Get:334 http://ftpmaster.internal/ubuntu lunar/universe s390x libjtidy-java all 7+svn20110807-5 [250 kB] Get:335 http://ftpmaster.internal/ubuntu lunar/main s390x libltdl7 s390x 2.4.7-5 [40.6 kB] Get:336 http://ftpmaster.internal/ubuntu lunar/main s390x libltdl-dev s390x 2.4.7-5 [169 kB] Get:337 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-clean-plugin-java all 3.2.0-2 [32.0 kB] Get:338 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-common-artifact-filters-java all 3.3.2-1 [47.7 kB] Get:339 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-shared-incremental-java all 1.1-3 [9566 B] Get:340 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-compiler-java all 2.12.1-1 [98.5 kB] Get:341 http://ftpmaster.internal/ubuntu lunar/universe s390x libqdox2-java all 2.0.3-1 [296 kB] Get:342 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-languages-java all 1.1.1-2 [46.8 kB] Get:343 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-compiler-plugin-java all 3.10.1-2 [58.5 kB] Get:344 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-build-api-java all 0.0.7-4 [10.3 kB] Get:345 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-filtering-java all 3.3.0-1 [49.2 kB] Get:346 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-reporting-impl-java all 3.2.0-2 [15.0 kB] Get:347 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-container-default1.5-java all 2.1.1-1 [2146 B] Get:348 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-ant-factory-java all 1.0~alpha2.1-4 [11.4 kB] Get:349 http://ftpmaster.internal/ubuntu lunar/universe s390x libplexus-bsh-factory-java all 1.0~alpha7-5 [7872 B] Get:350 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-plugin-tools-java all 3.7.1-1 [263 kB] Get:351 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-reporting-exec-java all 1.6.0-1 [26.4 kB] Get:352 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-resources-plugin-java all 3.3.0-1 [27.9 kB] Get:353 http://ftpmaster.internal/ubuntu lunar/universe s390x libmaven-site-plugin-java all 3.12.1-2 [106 kB] Get:354 http://ftpmaster.internal/ubuntu lunar/universe s390x libmuparserx4.0.11 s390x 4.0.11-2 [175 kB] Get:355 http://ftpmaster.internal/ubuntu lunar/universe s390x libmuparserx-dev s390x 4.0.11-2 [33.7 kB] Get:356 http://ftpmaster.internal/ubuntu lunar/main s390x libnl-3-dev s390x 3.7.0-0.2 [99.9 kB] Get:357 http://ftpmaster.internal/ubuntu lunar/main s390x libnl-route-3-dev s390x 3.7.0-0.2 [207 kB] Get:358 http://ftpmaster.internal/ubuntu lunar/universe s390x libmunge2 s390x 0.5.15-2 [14.4 kB] Get:359 http://ftpmaster.internal/ubuntu lunar/main s390x libpciaccess0 s390x 0.17-2 [17.7 kB] Get:360 http://ftpmaster.internal/ubuntu lunar/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu1 [11.7 kB] Get:361 http://ftpmaster.internal/ubuntu lunar/universe s390x ocl-icd-libopencl1 s390x 2.3.1-1 [39.0 kB] Get:362 http://ftpmaster.internal/ubuntu lunar/universe s390x libhwloc-plugins s390x 2.9.0-1 [15.6 kB] Get:363 http://ftpmaster.internal/ubuntu lunar/universe s390x libpmix2 s390x 4.2.2-1 [608 kB] Get:364 http://ftpmaster.internal/ubuntu lunar/universe s390x libopenmpi3 s390x 4.1.4-3ubuntu2 [2146 kB] Get:365 http://ftpmaster.internal/ubuntu lunar/main s390x libnuma-dev s390x 2.0.16-1 [36.5 kB] Get:366 http://ftpmaster.internal/ubuntu lunar/universe s390x libhwloc-dev s390x 2.9.0-1 [243 kB] Get:367 http://ftpmaster.internal/ubuntu lunar/main s390x zlib1g-dev s390x 1:1.2.13.dfsg-1ubuntu4 [896 kB] Get:368 http://ftpmaster.internal/ubuntu lunar/universe s390x libpmix-dev s390x 4.2.2-1 [917 kB] Get:369 http://ftpmaster.internal/ubuntu lunar/main s390x libprotobuf-lite32 s390x 3.21.12-1ubuntu7 [216 kB] Get:370 http://ftpmaster.internal/ubuntu lunar/main s390x libprotobuf32 s390x 3.21.12-1ubuntu7 [842 kB] Get:371 http://ftpmaster.internal/ubuntu lunar/main s390x libprotoc32 s390x 3.21.12-1ubuntu7 [626 kB] Get:372 http://ftpmaster.internal/ubuntu lunar/universe s390x libspdlog1.10 s390x 1:1.10.0+ds-0.4 [119 kB] Get:373 http://ftpmaster.internal/ubuntu lunar/universe s390x libfmt-dev s390x 9.1.0+ds1-2 [122 kB] Get:374 http://ftpmaster.internal/ubuntu lunar/universe s390x libspdlog-dev s390x 1:1.10.0+ds-0.4 [207 kB] Get:375 http://ftpmaster.internal/ubuntu lunar/main s390x libssl-dev s390x 3.0.8-1ubuntu1 [2035 kB] Get:376 http://ftpmaster.internal/ubuntu lunar/universe s390x libsurefire-java all 2.22.3-2 [1159 kB] Get:377 http://ftpmaster.internal/ubuntu lunar/universe s390x libtiledb2.13 s390x 2.14.1-2 [2359 kB] Get:378 http://ftpmaster.internal/ubuntu lunar/universe s390x libtiledb-dev s390x 2.14.1-2 [416 kB] Get:379 http://ftpmaster.internal/ubuntu lunar/universe s390x libwagon-file-java all 3.5.3-1 [7918 B] Get:380 http://ftpmaster.internal/ubuntu lunar/universe s390x libwagon-http-shaded-java all 3.5.3-1 [1332 kB] Get:381 http://ftpmaster.internal/ubuntu lunar/main s390x libxml2-utils s390x 2.9.14+dfsg-1.1build2 [38.7 kB] Get:382 http://ftpmaster.internal/ubuntu lunar/universe s390x maven all 3.8.7-1 [18.2 kB] Get:383 http://ftpmaster.internal/ubuntu lunar/universe s390x maven-repo-helper all 1.11 [137 kB] Get:384 http://ftpmaster.internal/ubuntu lunar/universe s390x maven-debian-helper all 2.6.1 [107 kB] Get:385 http://ftpmaster.internal/ubuntu lunar/universe s390x openmpi-common all 4.1.4-3ubuntu2 [163 kB] Get:386 http://ftpmaster.internal/ubuntu lunar/universe s390x openmpi-bin s390x 4.1.4-3ubuntu2 [82.4 kB] Get:387 http://ftpmaster.internal/ubuntu lunar/universe s390x rapidjson-dev all 1.1.0+dfsg2-7.1 [96.7 kB] Get:388 http://ftpmaster.internal/ubuntu lunar/universe s390x testng all 6.9.12-4 [773 kB] Get:389 http://ftpmaster.internal/ubuntu lunar/universe s390x libcurlpp0 s390x 0.8.1-5 [28.0 kB] Get:390 http://ftpmaster.internal/ubuntu lunar/universe s390x libcurlpp-dev s390x 0.8.1-5 [58.8 kB] Get:391 http://ftpmaster.internal/ubuntu lunar/main s390x libibverbs-dev s390x 44.0-2 [656 kB] Get:392 http://ftpmaster.internal/ubuntu lunar/main s390x liblzma-dev s390x 5.4.1-0.2 [175 kB] Get:393 http://ftpmaster.internal/ubuntu lunar/universe s390x libopenmpi-dev s390x 4.1.4-3ubuntu2 [824 kB] Get:394 http://ftpmaster.internal/ubuntu lunar/main s390x libprotobuf-dev s390x 3.21.12-1ubuntu7 [1324 kB] Get:395 http://ftpmaster.internal/ubuntu lunar/universe s390x protobuf-compiler s390x 3.21.12-1ubuntu7 [29.0 kB] Get:396 http://ftpmaster.internal/ubuntu lunar/main s390x uuid-dev s390x 2.38.1-4ubuntu1 [33.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 406 MB in 17s (24.3 MB/s) Selecting previously unselected package libpython3.11-minimal:s390x. (Reading database ... 14383 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_s390x.deb ... Unpacking libpython3.11-minimal:s390x (3.11.2-6) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../libexpat1_2.5.0-1_s390x.deb ... Unpacking libexpat1:s390x (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_s390x.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:s390x (3.11.2-6) ... Setting up libexpat1:s390x (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... 14697 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.2-1_s390x.deb ... Unpacking python3-minimal (3.11.2-1) ... Selecting previously unselected package media-types. Preparing to unpack .../media-types_10.0.0_all.deb ... 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Setting up fonts-dejavu-core (2.37-6) ... Setting up libipc-run-perl (20220807.0-1) ... Setting up libpcsclite1:s390x (1.9.9-1) ... Setting up libsensors5:s390x (1:3.6.0-7ubuntu1) ... Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... Setting up libltdl7:s390x (2.4.7-5) ... Setting up libhamcrest-java (2.2-1) ... Setting up libglapi-mesa:s390x (22.3.6-1ubuntu2) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up libsasl2-2:s390x (2.1.28+dfsg-10) ... Setting up libssh-4:s390x (0.10.4-2) ... Setting up libgfortran5:s390x (13-20230305-1ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:s390x (1.2.4-0.1build1) ... Setting up libfmt9:s390x (9.1.0+ds1-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up gpg-wks-server (2.2.40-1ubuntu2) ... Setting up liblzma-dev:s390x (5.4.1-0.2) ... Setting up libgif7:s390x (5.2.1-2.5) ... Setting up zlib1g-dev:s390x (1:1.2.13.dfsg-1ubuntu4) ... Setting up libnuma1:s390x (2.0.16-1) ... Setting up libprotobuf32:s390x (3.21.12-1ubuntu7) ... Setting up ocl-icd-libopencl1:s390x (2.3.1-1) ... Setting up libxshmfence1:s390x (1.3-1build4) ... Setting up libjsoup-java (1.15.3-1) ... Setting up at-spi2-common (2.47.1-1) ... Setting up librhash0:s390x (1.4.3-3) ... Setting up libuchardet0:s390x (0.0.7-1build2) ... Setting up libxml-commons-external-java (1.4.01-5) ... Setting up libxbean-reflect-java (4.5-8) ... Setting up libasound2:s390x (1.2.8-1build1) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libopentest4j-java (1.2.0-4) ... Setting up openmpi-common (4.1.4-3ubuntu2) ... Setting up libprotobuf-lite32:s390x (3.21.12-1ubuntu7) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:s390x (6.0.0+dfsg-3build1) ... Setting up libthai-data (0.1.29-1build1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libsub-quote-perl (2.006008-1ubuntu1) ... Setting up libclass-xsaccessor-perl (1.19-4build1) ... Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... Setting up cmake-data (3.25.1-1) ... Setting up libatk1.0-0:s390x (2.47.1-1) ... Setting up libwagon-http-shaded-java (3.5.3-1) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up ca-certificates-java (20230103ubuntu1) ... No JRE found. Skipping Java certificates setup. Setting up libxerces2-java (2.12.2-1) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libjaxp1.3-java (1.3.05-6) ... Setting up libfido2-1:s390x (1.12.0-2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libbsd0:s390x (0.11.7-4) ... Setting up libdrm-common (2.4.114-1) ... Setting up libcdi-api-java (1.2-3) ... Setting up libelf1:s390x (0.188-2.1) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up libxml2:s390x (2.9.14+dfsg-1.1build2) ... Setting up libldap2:s390x (2.6.3+dfsg-1~exp1ubuntu2) ... Setting up liburi-perl (5.17-1ubuntu1) ... Setting up chrpath (0.16-2) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3build2) ... Setting up libpython3-stdlib:s390x (3.11.2-1) ... Setting up gnupg-utils (2.2.40-1ubuntu2) ... Setting up libevent-pthreads-2.1-7:s390x (2.1.12-stable-5ubuntu1) ... Setting up libbz2-dev:s390x (1.0.8-5build1) ... Setting up libprotoc32:s390x (3.21.12-1ubuntu7) ... Setting up libnet-ssleay-perl:s390x (1.92-2build2) ... Setting up libspdlog1.10:s390x (1:1.10.0+ds-0.4) ... Setting up libjpeg8:s390x (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libdom4j-java (2.1.3-2) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libdw1:s390x (0.188-2.1) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu5) ... Setting up libevent-extra-2.1-7:s390x (2.1.12-stable-5ubuntu1) ... Setting up libxcb1:s390x (1.15-1) ... Setting up gettext (0.21-11) ... Setting up libjetty9-java (9.4.50-3) ... Setting up libxcb-xfixes0:s390x (1.15-1) ... Setting up java-wrappers (0.4) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libplexus-languages-java (1.1.1-2) ... Setting up protobuf-compiler (3.21.12-1ubuntu7) ... Setting up libmuparserx-dev:s390x (4.0.11-2) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:s390x (3.6.2-1ubuntu1) ... Setting up libxcb-render0:s390x (1.15-1) ... Setting up fontconfig-config (2.14.1-3ubuntu3) ... Setting up libxcb-glx0:s390x (1.15-1) ... Setting up libmaven-parent-java (35-1) ... Setting up libedit2:s390x (3.1-20221030-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:s390x (0.8-6ubuntu1) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up python3 (3.11.2-1) ... Setting up libnss3:s390x (2:3.87.1-1) ... Setting up libgfortran-12-dev:s390x (12.2.0-17ubuntu1) ... Setting up libxcb-shm0:s390x (1.15-1) ... Setting up libdevel-callchecker-perl:s390x (0.008-2) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:s390x (2.0.16-1) ... Setting up libprotobuf-dev:s390x (3.21.12-1ubuntu7) ... Setting up libxcb-present0:s390x (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up dirmngr (2.2.40-1ubuntu2) ... Created symlink /etc/systemd/user/sockets.target.wants/dirmngr.socket → /usr/lib/systemd/user/dirmngr.socket. Setting up libltdl-dev:s390x (2.4.7-5) ... Setting up libthai0:s390x (0.1.29-1build1) ... Setting up libsisu-plexus-java (0.3.4-3) ... Setting up gfortran-12 (12.2.0-17ubuntu1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libxcb-sync1:s390x (1.15-1) ... Setting up libxalan2-java (2.7.2-4) ... Setting up testng (6.9.12-4) ... Setting up shared-mime-info (2.2-1) ... Setting up libevent-dev (2.1.12-stable-5ubuntu1) ... Setting up libfmt-dev:s390x (9.1.0+ds1-2) ... Setting up libcommons-lang3-java (3.12.0-2) ... Setting up libxcb-dri2-0:s390x (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:s390x (2.4.114-1) ... Setting up dwz (0.15-1) ... Setting up libmaven-common-artifact-filters-java (3.3.2-1) ... Setting up groff-base (1.22.4-10) ... Setting up libtiff6:s390x (4.5.0-4ubuntu1) ... Setting up libxcb-randr0:s390x (1.15-1) ... Setting up libhtml-parser-perl:s390x (3.81-1) ... Setting up libllvm15:s390x (1:15.0.7-3) ... Setting up libnl-3-200:s390x (3.7.0-0.2) ... Setting up debugedit (1:5.0-5) ... Setting up libcommons-beanutils-java (1.9.4-1) ... Setting up libcurl4:s390x (7.88.1-6ubuntu1) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libx11-6:s390x (2:1.8.4-2) ... Setting up libgdk-pixbuf-2.0-0:s390x (2.42.10+dfsg-1build1) ... Setting up libhwloc-dev:s390x (2.9.0-1) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libfontconfig1:s390x (2.14.1-3ubuntu3) ... Setting up libcommons-configuration-java (1.10-6) ... Setting up libwagon-file-java (3.5.3-1) ... Setting up libxml2-utils (2.9.14+dfsg-1.1build2) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libxcomposite1:s390x (1:0.4.5-1build2) ... Setting up libavahi-client3:s390x (0.8-6ubuntu1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libtiledb2.13:s390x (2.14.1-2) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libdrm-amdgpu1:s390x (2.4.114-1) ... Setting up libxcb-dri3-0:s390x (1.15-1) ... Setting up gtk-update-icon-cache (3.24.37-1ubuntu1) ... Setting up libcurlpp0:s390x (0.8.1-5) ... Setting up libx11-xcb1:s390x (2:1.8.4-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up velocity (1.7-6) ... Setting up fontconfig (2.14.1-3ubuntu3) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:s390x (2.4.114-1) ... Setting up libxdamage1:s390x (1:1.1.6-1) ... Setting up gpg-wks-client (2.2.40-1ubuntu2) ... Setting up libxrender1:s390x (1:0.9.10-1.1) ... Setting up libcommons-compress-java (1.22-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up libdrm-radeon1:s390x (2.4.114-1) ... Setting up libcommons-digester-java (1.8.1-5) ... Setting up openssh-client (1:9.0p1-1ubuntu8) ... update-alternatives: using /usr/bin/ssh to provide /usr/bin/rsh (rsh) in auto mode update-alternatives: using /usr/bin/slogin to provide /usr/bin/rlogin (rlogin) in auto mode update-alternatives: using /usr/bin/scp to provide /usr/bin/rcp (rcp) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:s390x (0.015-2build2) ... Setting up libpango-1.0-0:s390x (1.50.12+ds-1) ... Setting up libgl1-mesa-dri:s390x (22.3.6-1ubuntu2) ... Setting up libxext6:s390x (2:1.3.4-1build1) ... Setting up libxmlgraphics-commons-java (2.8-2) ... Setting up libspdlog-dev:s390x (1:1.10.0+ds-0.4) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:s390x (1.16.0-7) ... Setting up libxxf86vm1:s390x (1:1.1.4-1build3) ... Setting up libnl-route-3-200:s390x (3.7.0-0.2) ... Setting up libxnvctrl0:s390x (510.47.03-0ubuntu1) ... Setting up libmaven-filtering-java (3.3.0-1) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxfixes3:s390x (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:s390x (7.88.1-6ubuntu1) ... Setting up libtiledb-dev:s390x (2.14.1-2) ... Setting up libxinerama1:s390x (2:1.1.4-3) ... Setting up libxrandr2:s390x (2:1.5.2-2) ... Setting up libcurlpp-dev:s390x (0.8.1-5) ... Setting up libcups2:s390x (2.4.2-1ubuntu4) ... Setting up libnl-3-dev:s390x (3.7.0-0.2) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up gnupg (2.2.40-1ubuntu2) ... Setting up cmake (3.25.1-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libpangoft2-1.0-0:s390x (1.50.12+ds-1) ... Setting up libmaven-resources-plugin-java (3.3.0-1) ... Setting up libpangocairo-1.0-0:s390x (1.50.12+ds-1) ... Setting up libibverbs1:s390x (44.0-2) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libglx-mesa0:s390x (22.3.6-1ubuntu2) ... Setting up libxi6:s390x (2:1.8-1build1) ... Setting up libglx0:s390x (1.6.0-1) ... Setting up libcommons-validator-java (1:1.7-1) ... Setting up ibverbs-providers:s390x (44.0-2) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libxtst6:s390x (2:1.2.3-1.1) ... Setting up libbatik-java (1.16+dfsg-1) ... Setting up libmoo-perl (2.005005-1) ... Setting up libxcursor1:s390x (1:1.2.1-1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up libhwloc-plugins:s390x (2.9.0-1) ... Setting up libnl-route-3-dev:s390x (3.7.0-0.2) ... Setting up libgl1:s390x (1.6.0-1) ... Setting up libmaven-clean-plugin-java (3.2.0-2) ... Setting up openjdk-17-jre-headless:s390x (17.0.6+10-1ubuntu2) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libplexus-archiver-java (4.6.1-1) ... Setting up librdmacm1:s390x (44.0-2) ... Setting up libfop-java (1:2.8-2) ... Setting up libpmix2:s390x (4.2.2-1) ... Setting up libmaven-archiver-java (3.6.0-1) ... Setting up libibverbs-dev:s390x (44.0-2) ... Setting up libpmix-dev:s390x (4.2.2-1) ... Setting up libfabric1:s390x (1.17.0-3) ... Setting up libopenmpi3:s390x (4.1.4-3ubuntu2) ... Setting up openmpi-bin (4.1.4-3ubuntu2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:s390x (4.1.4-3ubuntu2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode Setting up liberror-prone-java (2.18.0-1) ... Setting up libwww-perl (6.67-1) ... Setting up devscripts (2.23.3ubuntu1) ... Setting up libguava-java (31.1-1) ... Setting up adwaita-icon-theme (41.0-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up javahelper (0.78) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libgtk2.0-0:s390x (2.24.33-2ubuntu2) ... Setting up libguice-java (4.2.3-2) ... Setting up humanity-icon-theme (0.6.16) ... Setting up libplexus-i18n-java (1.0-beta-10-6) ... Setting up libplexus-container-default1.5-java (2.1.1-1) ... Setting up libplexus-velocity-java (1.2-3.1) ... Setting up libmaven3-core-java (3.8.7-1) ... Setting up libmaven-shared-incremental-java (1.1-3) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up ubuntu-mono (20.10-0ubuntu2) ... Setting up libplexus-bsh-factory-java (1.0~alpha7-5) ... Setting up libplexus-compiler-java (2.12.1-1) ... Setting up libmaven-compiler-plugin-java (3.10.1-2) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up libmaven-jar-plugin-java (3.3.0-2) ... Setting up libcommons-text-java (1.10.0-1) ... Setting up libdoxia-core-java (1.12.0-1) ... Setting up libdoxia-java (1.12.0-1) ... Setting up libmaven-reporting-api-java (3.1.1-1) ... Setting up libmaven-reporting-exec-java (1.6.0-1) ... Processing triggers for libc-bin (2.37-0ubuntu2) ... Processing triggers for systemd (252.5-2ubuntu2) ... Processing triggers for ca-certificates-java (20230103ubuntu1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up maven (3.8.7-1) ... update-alternatives: using /usr/share/maven/bin/mvn to provide /usr/bin/mvn (mvn) in auto mode Setting up openjdk-17-jdk-headless:s390x (17.0.6+10-1ubuntu2) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode Setting up ant (1.10.13-1) ... Setting up junit4 (4.13.2-3) ... Setting up default-jre-headless (2:1.17-74) ... Setting up openjdk-17-jre:s390x (17.0.6+10-1ubuntu2) ... Setting up maven-repo-helper (1.11) ... Setting up default-jre (2:1.17-74) ... Setting up openjdk-17-jdk:s390x (17.0.6+10-1ubuntu2) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up libplexus-ant-factory-java (1.0~alpha2.1-4) ... Setting up default-jdk-headless (2:1.17-74) ... Setting up junit5 (5.9.2-1) ... Setting up default-jdk (2:1.17-74) ... Processing triggers for sgml-base (1.31) ... Setting up libvelocity-tools-java (2.0-8) ... Setting up libdoxia-sitetools-java (1.11.1-1) ... Setting up libmaven-site-plugin-java (3.12.1-2) ... Setting up libmaven-reporting-impl-java (3.2.0-2) ... Setting up libmaven-plugin-tools-java (3.7.1-1) ... Setting up libsurefire-java (2.22.3-2) ... Setting up maven-debian-helper (2.6.1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-139-generic #156-Ubuntu SMP Fri Jan 20 17:27:47 UTC 2023 s390x (s390x) Toolchain package versions: binutils_2.40-2ubuntu3 dpkg-dev_1.21.21ubuntu1 g++-12_12.2.0-17ubuntu1 gcc-12_12.2.0-17ubuntu1 libc6-dev_2.37-0ubuntu2 libstdc++-12-dev_12.2.0-17ubuntu1 libstdc++6_13-20230305-1ubuntu1 linux-libc-dev_6.1.0-16.16 Package versions: adduser_3.129ubuntu1 advancecomp_2.5-1 adwaita-icon-theme_41.0-1ubuntu1 ant_1.10.13-1 apt_2.6.0 at-spi2-common_2.47.1-1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.40-2ubuntu3 binutils-common_2.40-2ubuntu3 binutils-s390x-linux-gnu_2.40-2ubuntu3 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20230311 ca-certificates-java_20230103ubuntu1 catch2_2.13.10-1 chrpath_0.16-2 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1ubuntu2 cpp_4:12.2.0-3ubuntu1 cpp-12_12.2.0-17ubuntu1 dash_0.5.12-2ubuntu1 dctrl-tools_2.24-3build2 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.7-0.4 debugedit_1:5.0-5 default-jdk_2:1.17-74 default-jdk-headless_2:1.17-74 default-jre_2:1.17-74 default-jre-headless_2:1.17-74 devscripts_2.23.3ubuntu1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1ubuntu2 dpkg_1.21.21ubuntu1 dpkg-dev_1.21.21ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-1ubuntu1 fakeroot_1.31-1.1 file_1:5.44-3 findutils_4.9.0-3ubuntu1 fontconfig_2.14.1-3ubuntu3 fontconfig-config_2.14.1-3ubuntu3 fonts-dejavu-core_2.37-6 g++_4:12.2.0-3ubuntu1 g++-12_12.2.0-17ubuntu1 gcc_4:12.2.0-3ubuntu1 gcc-12_12.2.0-17ubuntu1 gcc-12-base_12.2.0-17ubuntu1 gcc-13-base_13-20230305-1ubuntu1 gettext_0.21-11 gettext-base_0.21-11 gfortran-12_12.2.0-17ubuntu1 gnupg_2.2.40-1ubuntu2 gnupg-l10n_2.2.40-1ubuntu2 gnupg-utils_2.2.40-1ubuntu2 gpg_2.2.40-1ubuntu2 gpg-agent_2.2.40-1ubuntu2 gpg-wks-client_2.2.40-1ubuntu2 gpg-wks-server_2.2.40-1ubuntu2 gpgconf_2.2.40-1ubuntu2 gpgsm_2.2.40-1ubuntu2 gpgv_2.2.40-1ubuntu2 grep_3.8-5 groff-base_1.22.4-10 gtk-update-icon-cache_3.24.37-1ubuntu1 gzip_1.12-1ubuntu1 hicolor-icon-theme_0.17-2 hostname_3.23+nmu1ubuntu1 humanity-icon-theme_0.6.16 ibverbs-providers_44.0-2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 java-common_0.74 java-wrappers_0.4 javahelper_0.78 junit4_4.13.2-3 junit5_5.9.2-1 libacl1_2.3.1-3 libaopalliance-java_20070526-7 libapache-pom-java_29-2 libapiguardian-java_1.1.2-1 libapparmor1_3.0.8-1ubuntu2 libapt-pkg6.0_2.6.0 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1ubuntu1 libargon2-1_0~20171227-0.3 libasan8_13-20230305-1ubuntu1 libasm-java_9.4-1 libasound2_1.2.8-1build1 libasound2-data_1.2.8-1build1 libassuan0_2.5.5-5 libatinject-jsr330-api-java_1.0+ds1-5 libatk1.0-0_2.47.1-1 libatomic1_13-20230305-1ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libavahi-client3_0.8-6ubuntu1 libavahi-common-data_0.8-6ubuntu1 libavahi-common3_0.8-6ubuntu1 libb-hooks-op-check-perl_0.22-2build1 libbatik-java_1.16+dfsg-1 libbinutils_2.40-2ubuntu3 libblkid1_2.38.1-4ubuntu1 libbrotli1_1.0.9-2build8 libbsd0_0.11.7-4 libbsh-java_2.0b4-20 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.37-0ubuntu2 libc-dev-bin_2.37-0ubuntu2 libc6_2.37-0ubuntu2 libc6-dev_2.37-0ubuntu2 libcairo2_1.16.0-7 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-3ubuntu2 libcbor0.8_0.8.0-2ubuntu1 libcc1-0_13-20230305-1ubuntu1 libcdi-api-java_1.2-3 libclass-method-modifiers-perl_2.14-1 libclass-xsaccessor-perl_1.19-4build1 libclone-perl_0.46-1 libcom-err2_1.47.0-1ubuntu1 libcommons-beanutils-java_1.9.4-1 libcommons-cli-java_1.5.0-1 libcommons-codec-java_1.15-1 libcommons-collections3-java_3.2.2-2 libcommons-compress-java_1.22-1 libcommons-configuration-java_1.10-6 libcommons-digester-java_1.8.1-5 libcommons-io-java_2.11.0-2 libcommons-lang-java_2.6-10 libcommons-lang3-java_3.12.0-2 libcommons-logging-java_1.2-3 libcommons-parent-java_56-1 libcommons-text-java_1.10.0-1 libcommons-validator-java_1:1.7-1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libcryptsetup12_2:2.6.1-1ubuntu1 libctf-nobfd0_2.40-2ubuntu3 libctf0_2.40-2ubuntu3 libcups2_2.4.2-1ubuntu4 libcurl4_7.88.1-6ubuntu1 libcurl4-openssl-dev_7.88.1-6ubuntu1 libcurlpp-dev_0.8.1-5 libcurlpp0_0.8.1-5 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg2-1 libdbus-1-3_1.14.4-1ubuntu1 libdebconfclient0_0.267ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdeflate0_1.15-1 libdevel-callchecker-perl_0.008-2 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdom4j-java_2.1.3-2 libdoxia-core-java_1.12.0-1 libdoxia-java_1.12.0-1 libdoxia-sitetools-java_1.11.1-1 libdpkg-perl_1.21.21ubuntu1 libdrm-amdgpu1_2.4.114-1 libdrm-common_2.4.114-1 libdrm-nouveau2_2.4.114-1 libdrm-radeon1_2.4.114-1 libdrm2_2.4.114-1 libdw1_0.188-2.1 libdynaloader-functions-perl_0.003-3 libedit2_3.1-20221030-2 libel-api-java_3.0.0-3 libelf1_0.188-2.1 libencode-locale-perl_1.05-3 liberror-prone-java_2.18.0-1 libevent-2.1-7a_2.1.12-stable-5ubuntu1 libevent-core-2.1-7a_2.1.12-stable-5ubuntu1 libevent-dev_2.1.12-stable-5ubuntu1 libevent-extra-2.1-7_2.1.12-stable-5ubuntu1 libevent-openssl-2.1-7_2.1.12-stable-5ubuntu1 libevent-pthreads-2.1-7_2.1.12-stable-5ubuntu1 libexpat1_2.5.0-1 libext2fs2_1.47.0-1ubuntu1 libfabric1_1.17.0-3 libfakeroot_1.31-1.1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfido2-1_1.12.0-2 libfile-dirlist-perl_0.05-3 libfile-homedir-perl_1.006-2 libfile-listing-perl_6.15-1 libfile-stripnondeterminism-perl_1.13.1-1 libfile-touch-perl_0.12-2 libfile-which-perl_1.27-2 libfmt-dev_9.1.0+ds1-2 libfmt9_9.1.0+ds1-2 libfontbox2-java_2.0.27-2 libfontconfig1_2.14.1-3ubuntu3 libfop-java_1:2.8-2 libfreetype6_2.12.1+dfsg-4 libfribidi0_1.0.8-2.1ubuntu1 libgcc-12-dev_12.2.0-17ubuntu1 libgcc-s1_13-20230305-1ubuntu1 libgcrypt20_1.10.1-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgdk-pixbuf-2.0-0_2.42.10+dfsg-1build1 libgdk-pixbuf2.0-common_2.42.10+dfsg-1build1 libgeronimo-annotation-1.3-spec-java_1.3-1 libgeronimo-interceptor-3.0-spec-java_1.0.1-4fakesync libgfortran-12-dev_12.2.0-17ubuntu1 libgfortran5_13-20230305-1ubuntu1 libgif7_5.2.1-2.5 libgl1_1.6.0-1 libgl1-mesa-dri_22.3.6-1ubuntu2 libglapi-mesa_22.3.6-1ubuntu2 libglib2.0-0_2.76.0-1 libglvnd0_1.6.0-1 libglx-mesa0_22.3.6-1ubuntu2 libglx0_1.6.0-1 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.8-5ubuntu1 libgomp1_13-20230305-1ubuntu1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1build2 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: genomicsdb Binary: libgenomicsdb-java, libgenomicsdb-jni, genomicsdb-tools, libgenomicsdb0, libgenomicsdb-dev Architecture: any all Version: 1.4.4-2build1 Maintainer: Debian Med Packaging Team Uploaders: Pierre Gruet Homepage: https://www.genomicsdb.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/genomicsdb Vcs-Git: https://salsa.debian.org/med-team/genomicsdb.git Testsuite: autopkgtest Testsuite-Triggers: default-jdk Build-Depends: debhelper-compat (= 13), catch2, cmake, default-jdk, javahelper, libbz2-dev, libcurlpp-dev, libfmt-dev, libmuparserx-dev, libopenmpi-dev, libprotobuf-dev, libspdlog-dev, libssl-dev, libtiledb-dev, liblzma-dev, maven-debian-helper, protobuf-compiler, rapidjson-dev, testng , uuid-dev Build-Depends-Arch: chrpath Build-Depends-Indep: libbuild-helper-maven-plugin-java, libcommons-io-java, libcommons-lang3-java, libgetopt-java, libguava-java, libhtsjdk-java, libjson-simple-java, liblog4j2-java, libmaven-antrun-plugin-java, libprotobuf-java, libprotobuf-java-format-java, libsurefire-java Package-List: genomicsdb-tools deb science optional arch=any libgenomicsdb-dev deb libdevel optional arch=any libgenomicsdb-java deb java optional arch=all libgenomicsdb-jni deb java optional arch=any libgenomicsdb0 deb libs optional arch=any Checksums-Sha1: 7ea1900a53e268033361ac191fcccb2950345bad 1515241 genomicsdb_1.4.4.orig-genomicsdb-htslib.tar.gz 3fdb99528fcbfd36b93fbc0c498aafe77e0d5aa1 1071958 genomicsdb_1.4.4.orig-genomicsdb-tiledb.tar.gz 1e733da38f8ba66da11262d164bba6c4f5d120b2 6694675 genomicsdb_1.4.4.orig.tar.gz cff5381a37d37dd5c1f2e7005921b9c64924ea6e 26792 genomicsdb_1.4.4-2build1.debian.tar.xz Checksums-Sha256: 32483d1b3a37559e0f328af27a8ec67197606899796dd4e580612bd6f32cd9f3 1515241 genomicsdb_1.4.4.orig-genomicsdb-htslib.tar.gz 66a9025cdd95ab0fbba0d8077a9d2fa756198adbbb2aec6cf067aa362b50a6bd 1071958 genomicsdb_1.4.4.orig-genomicsdb-tiledb.tar.gz dddeaca73064319695041163171b1dda0fabb36f643407ae0310ff5c6b4fb325 6694675 genomicsdb_1.4.4.orig.tar.gz dc1f9cd683b48a091332351b3f7177b7afda296d684b300fc9969ca8dc83e654 26792 genomicsdb_1.4.4-2build1.debian.tar.xz Files: 89a7133f35d70b5520d583c93b9cbe94 1515241 genomicsdb_1.4.4.orig-genomicsdb-htslib.tar.gz 99bfd6c53f9df89ca7c286460eec93d1 1071958 genomicsdb_1.4.4.orig-genomicsdb-tiledb.tar.gz ff703dd416f1d033266006ee6b30f6b0 6694675 genomicsdb_1.4.4.orig.tar.gz 214a2d54b80b14daa6b42cef0905293d 26792 genomicsdb_1.4.4-2build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEkpeKbhleSSGCX3/w808JdE6fXdkFAmO1qcMACgkQ808JdE6f XdmXkQ/9E87buuW5BuwMz22ZjGIUatphE9CMCVBMyTGApWS6zSYqQbWcZhRLnE/1 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dpkg-source: info: unpacking genomicsdb_1.4.4.orig.tar.gz dpkg-source: info: unpacking genomicsdb_1.4.4.orig-genomicsdb-htslib.tar.gz dpkg-source: info: unpacking genomicsdb_1.4.4.orig-genomicsdb-tiledb.tar.gz dpkg-source: info: unpacking genomicsdb_1.4.4-2build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying string_view_needs_cxx17.patch dpkg-source: info: applying no_download_of_dependencies.patch dpkg-source: info: applying using_htslib_from_component.patch dpkg-source: info: applying using_timedb_from_component.patch dpkg-source: info: applying strip_tiledb_CMakeLists.patch dpkg-source: info: applying ignoring_sdk_to_download.patch dpkg-source: info: applying use_shared_protobuf_lib.patch dpkg-source: info: applying missing_links_in_libs.patch dpkg-source: info: applying pom.patch dpkg-source: info: applying no_spark_in_Java_build.patch dpkg-source: info: applying JsonFormat_methods.patch dpkg-source: info: applying tests_in_all_target.patch dpkg-source: info: applying run_tests_in_not_yet_installed_dir.patch dpkg-source: info: applying build_jni.patch dpkg-source: info: applying library_names_and_install_paths.patch dpkg-source: info: applying htslib_define_PATH_MAX.patch dpkg-source: info: applying htslib_testShebang.patch dpkg-source: info: applying htslib_fix_float_precision dpkg-source: info: applying spelling.patch dpkg-source: info: applying handling_rpaths.patch dpkg-source: info: applying int_type_initialization.patch dpkg-source: info: applying missing_inclusion_tiledb_constants.patch dpkg-source: info: applying using_debian_packaged_catch2.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25448812 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25448812 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25448812 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package genomicsdb dpkg-buildpackage: info: source version 1.4.4-2build1 dpkg-buildpackage: info: source distribution lunar dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --buildsystem=cmake --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # Removing the files we provided manually for the build of the component if [ -e genomicsdb-htslib/CMakeLists.txt ]; then rm genomicsdb-htslib/CMakeLists.txt; fi if [ -e genomicsdb-htslib/config.h ]; then rm genomicsdb-htslib/config.h; fi if [ -e genomicsdb-htslib/version.h ]; then rm genomicsdb-htslib/version.h; fi dh_auto_clean dh_auto_clean --buildsystem=maven bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo \$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done" mh_unpatchpoms -plibgenomicsdb-java # Removing the debian/maven.properties file we setup during configure step. if [ -e debian/maven.properties ]; then rm debian/maven.properties; fi # Removing the patched pom.xml file. if [ -e pom.xml.old ]; then mv pom.xml.old pom.xml; fi make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=cmake jh_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake --with javahelper dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' # Preparing the build of the htslib component. cp debian/htslibComponentFiles/* genomicsdb-htslib/ echo '#define HTS_VERSION_TEXT ""' > genomicsdb-htslib/version.h # Configuring the C++ part using CMake. dh_auto_configure -- \ -DBUILD_JAVA:BOOL=False \ -DCMAKE_INSTALL_PREFIX:PATH=/usr \ -DJAVA_HOME:PATH=/usr/lib/jvm/default-java \ -DPROTOBUF_ROOT_DIR:PATH=/usr \ -DCMAKE_LIBRARY_ARCHITECTURE:STRING=s390x-linux-gnu \ -DVERSION=1.4.4 \ -DSOVERSION=0 cd obj-s390x-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DBUILD_JAVA:BOOL=False -DCMAKE_INSTALL_PREFIX:PATH=/usr -DJAVA_HOME:PATH=/usr/lib/jvm/default-java -DPROTOBUF_ROOT_DIR:PATH=/usr -DCMAKE_LIBRARY_ARCHITECTURE:STRING=s390x-linux-gnu -DVERSION=1.4.4 -DSOVERSION=0 .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found BZip2: /usr/lib/s390x-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Found CURL: /usr/lib/s390x-linux-gnu/libcurl.so (found version "7.88.1") -- Looking for lzma_auto_decoder in /usr/lib/s390x-linux-gnu/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/s390x-linux-gnu/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/s390x-linux-gnu/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/s390x-linux-gnu/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/s390x-linux-gnu/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/s390x-linux-gnu/liblzma.so - found -- Found LibLZMA: /usr/lib/s390x-linux-gnu/liblzma.so (found version "5.4.1") -- Found ZLIB: /usr/lib/s390x-linux-gnu/libz.so (found version "1.2.13") -- Found libuuid: /usr/include -- Found OpenSSL: /usr/lib/s390x-linux-gnu/libcrypto.so (found version "3.0.8") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test CXX_2011_FOUND -- Performing Test CXX_2011_FOUND - Success -- Compiler supports C++ 2011. -- The TileDB library is compiled with verbosity. -- CMAKE_BUILD_TYPE=None -- Performing Test test_cpp_2011 -- Performing Test test_cpp_2011 - Success -- Performing Test test_stack_protector_strong -- Performing Test test_stack_protector_strong - Success -- Found MPI_C: /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Performing Test OPENMPV4_FOUND -- Performing Test OPENMPV4_FOUND - Success -- Performing Test STRING_VIEW_FOUND -- Performing Test STRING_VIEW_FOUND - Success -- string_view found -- RapidJSON found. Headers: /usr/include -- Found Spdlog: /usr/include -- Try finding Protobuf Library -- Could not find libcsv headers and/or libraries (missing: LIBCSV_LIBRARY LIBCSV_INCLUDE_DIR) -- Could not find safestring headers and/or libraries (missing: SAFESTRINGLIB_INCLUDE_DIR SAFESTRINGLIB_LIBRARY) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-s390x-linux-gnu make[1]: Leaving directory '/<>' jh_linkjars -a -O--buildsystem=cmake debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build cd obj-s390x-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles /<>/obj-s390x-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/depend make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/depend make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-htslib /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-htslib /<>/obj-s390x-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/core /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/protobuf_ep.dir/build'. make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 0%] Built target protobuf_ep [ 0%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/knetfile.c.o.d -o 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-fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o -c /<>/genomicsdb-tiledb/core/src/array/array_iterator.cc cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kfunc.c.o -MF CMakeFiles/genomicsdb-hts.dir/kfunc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/kfunc.c.o -c /<>/genomicsdb-htslib/kfunc.c [ 1%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o -c /<>/genomicsdb-tiledb/core/src/array/array.cc [ 2%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o -MF CMakeFiles/genomicsdb-hts.dir/kstring.c.o.d -o CMakeFiles/genomicsdb-hts.dir/kstring.c.o -c /<>/genomicsdb-htslib/kstring.c [ 2%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -MF CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -c /<>/genomicsdb-htslib/bcf_sr_sort.c make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/resources /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/src/resources /<>/obj-s390x-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 2%] Generating source/header files from .proto files cd /<>/src/resources && /usr/bin/protoc --cpp_out=/<>/obj-s390x-linux-gnu/src/resources genomicsdb_coordinates.proto genomicsdb_callsets_mapping.proto genomicsdb_export_config.proto genomicsdb_import_config.proto genomicsdb_vid_mapping.proto make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 2%] Built target PROTOBUF_GENERATED_CXX_TARGET [ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -c /<>/genomicsdb-tiledb/core/src/array/array_read_state.cc [ 2%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -MF CMakeFiles/genomicsdb-hts.dir/bgzf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -c /<>/genomicsdb-htslib/bgzf.c [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o -MF CMakeFiles/genomicsdb-hts.dir/errmod.c.o.d -o CMakeFiles/genomicsdb-hts.dir/errmod.c.o -c /<>/genomicsdb-htslib/errmod.c [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/faidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/faidx.c.o -c /<>/genomicsdb-htslib/faidx.c [ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o -MF CMakeFiles/genomicsdb-hts.dir/header.c.o.d -o CMakeFiles/genomicsdb-hts.dir/header.c.o -c /<>/genomicsdb-htslib/header.c make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/main /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/src/main /<>/obj-s390x-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 3%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -c /<>/src/main/cpp/src/query_operations/variant_operations.cc [ 3%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -c /<>/genomicsdb-tiledb/core/src/array/array_schema.cc [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile.c.o -c /<>/genomicsdb-htslib/hfile.c In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/src/query_operations/variant_operations.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o -c /<>/genomicsdb-htslib/hfile_libcurl.c /<>/genomicsdb-htslib/hfile_libcurl.c: In function ‘libcurl_open’: /<>/genomicsdb-htslib/hfile_libcurl.c:1335:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from /<>/genomicsdb-htslib/hfile_libcurl.c:47: /usr/include/s390x-linux-gnu/curl/curl.h:2858:3: note: declared here 2858 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -c /<>/genomicsdb-htslib/hfile_net.c [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts.c.o -c /<>/genomicsdb-htslib/hts.c [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts_os.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -c /<>/genomicsdb-htslib/hts_os.c [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o -MF CMakeFiles/genomicsdb-hts.dir/md5.c.o.d -o CMakeFiles/genomicsdb-hts.dir/md5.c.o -c /<>/genomicsdb-htslib/md5.c [ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o -MF CMakeFiles/genomicsdb-hts.dir/multipart.c.o.d -o CMakeFiles/genomicsdb-hts.dir/multipart.c.o -c /<>/genomicsdb-htslib/multipart.c [ 6%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -MF CMakeFiles/genomicsdb-hts.dir/probaln.c.o.d -o CMakeFiles/genomicsdb-hts.dir/probaln.c.o -c /<>/genomicsdb-htslib/probaln.c [ 7%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -c /<>/genomicsdb-tiledb/core/src/array/array_sorted_read_state.cc [ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o -MF CMakeFiles/genomicsdb-hts.dir/realn.c.o.d -o CMakeFiles/genomicsdb-hts.dir/realn.c.o -c /<>/genomicsdb-htslib/realn.c [ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/regidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/regidx.c.o -c /<>/genomicsdb-htslib/regidx.c [ 7%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -c /<>/genomicsdb-tiledb/core/src/array/array_sorted_write_state.cc [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o -MF CMakeFiles/genomicsdb-hts.dir/region.c.o.d -o CMakeFiles/genomicsdb-hts.dir/region.c.o -c /<>/genomicsdb-htslib/region.c [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o -MF CMakeFiles/genomicsdb-hts.dir/sam.c.o.d -o CMakeFiles/genomicsdb-hts.dir/sam.c.o -c /<>/genomicsdb-htslib/sam.c [ 8%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -c /<>/genomicsdb-tiledb/core/src/c_api/tiledb.cc [ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -MF CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o.d -o CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -c /<>/genomicsdb-htslib/synced_bcf_reader.c [ 9%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -c /<>/genomicsdb-htslib/vcf_sweep.c [ 9%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o -MF CMakeFiles/genomicsdb-hts.dir/tbx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/tbx.c.o -c /<>/genomicsdb-htslib/tbx.c [ 9%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/textutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/textutils.c.o -c /<>/genomicsdb-htslib/textutils.c [ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -MF CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o.d -o CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -c /<>/genomicsdb-htslib/thread_pool.c [ 11%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -c /<>/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc [ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf.c.o -c /<>/genomicsdb-htslib/vcf.c [ 11%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec.cc /<>/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc: In function ‘void TileDBUtils::print_md5_hash(unsigned char*, size_t)’: /<>/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc:330:6: warning: ‘unsigned char* TileDBUtils::MD5(const unsigned char*, size_t, unsigned char*)’ is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 330 | MD5(buffer, length, md); | ~~~^~~~~~~~~~~~~~~~~~~~ In file included from /<>/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc:327: /usr/include/openssl/md5.h:52:38: note: declared here 52 | OSSL_DEPRECATEDIN_3_0 unsigned char *MD5(const unsigned char *d, size_t n, | ^~~ [ 11%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -c /<>/src/main/cpp/src/query_operations/broad_combined_gvcf.cc [ 11%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec_blosc.cc [ 12%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec_filter.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /<>/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 12%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec_filter_bit_shuffle.cc [ 12%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec_filter_delta_encode.cc [ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec_gzip.cc [ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec_lz4.cc [ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -c /<>/genomicsdb-htslib/vcfutils.c [ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec_rle.cc [ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -c /<>/genomicsdb-tiledb/core/src/codec/codec_zstd.cc [ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -c /<>/genomicsdb-htslib/cram/cram_codecs.c [ 15%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -c /<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle/bitshuffle_core.c [ 15%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -c /<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle/iochain.c [ 16%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -c /<>/genomicsdb-tiledb/core/src/expressions/expression.cc [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -c /<>/genomicsdb-htslib/cram/cram_decode.c [ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -c /<>/genomicsdb-htslib/cram/cram_encode.c [ 16%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -c /<>/genomicsdb-tiledb/core/src/fragment/book_keeping.cc [ 16%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -c /<>/src/main/cpp/src/query_operations/variant_operations_columnar.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/src/query_operations/variant_operations_columnar.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -c /<>/genomicsdb-htslib/cram/cram_external.c [ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -c /<>/genomicsdb-htslib/cram/cram_index.c [ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -c /<>/genomicsdb-tiledb/core/src/fragment/fragment.cc [ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -c /<>/genomicsdb-htslib/cram/cram_io.c [ 18%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -c /<>/genomicsdb-tiledb/core/src/fragment/read_state.cc [ 19%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -c /<>/genomicsdb-htslib/cram/cram_samtools.c [ 19%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -c /<>/genomicsdb-htslib/cram/cram_stats.c [ 19%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -c /<>/genomicsdb-htslib/cram/mFILE.c [ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -c /<>/genomicsdb-htslib/cram/open_trace_file.c [ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -c /<>/genomicsdb-htslib/cram/pooled_alloc.c [ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -c /<>/genomicsdb-htslib/cram/rANS_static.c [ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/<>/genomicsdb-htslib -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -c /<>/genomicsdb-htslib/cram/string_alloc.c [ 21%] Linking C shared library libgenomicsdb-hts.so cd /<>/obj-s390x-linux-gnu/genomicsdb-htslib && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb-hts.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-hts.so -o libgenomicsdb-hts.so "CMakeFiles/genomicsdb-hts.dir/kfunc.c.o" "CMakeFiles/genomicsdb-hts.dir/knetfile.c.o" "CMakeFiles/genomicsdb-hts.dir/kstring.c.o" "CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o" "CMakeFiles/genomicsdb-hts.dir/bgzf.c.o" "CMakeFiles/genomicsdb-hts.dir/errmod.c.o" "CMakeFiles/genomicsdb-hts.dir/faidx.c.o" "CMakeFiles/genomicsdb-hts.dir/header.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o" "CMakeFiles/genomicsdb-hts.dir/hts.c.o" "CMakeFiles/genomicsdb-hts.dir/hts_os.c.o" "CMakeFiles/genomicsdb-hts.dir/md5.c.o" "CMakeFiles/genomicsdb-hts.dir/multipart.c.o" "CMakeFiles/genomicsdb-hts.dir/probaln.c.o" "CMakeFiles/genomicsdb-hts.dir/realn.c.o" "CMakeFiles/genomicsdb-hts.dir/regidx.c.o" "CMakeFiles/genomicsdb-hts.dir/region.c.o" "CMakeFiles/genomicsdb-hts.dir/sam.c.o" "CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o" "CMakeFiles/genomicsdb-hts.dir/tbx.c.o" "CMakeFiles/genomicsdb-hts.dir/textutils.c.o" "CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf.c.o" "CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o" /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/liblzma.so [ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -c /<>/genomicsdb-tiledb/core/src/fragment/write_state.cc [ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -c /<>/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc [ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -c /<>/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 22%] Built target genomicsdb-hts [ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -c /<>/src/main/cpp/src/genomicsdb/variant_cell.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/src/genomicsdb/variant_cell.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:25: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/query_operations/gt_remapper.h:26, from /<>/src/main/cpp/include/query_operations/gt_remapper_template_definition.h:25, from /<>/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 22%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -c /<>/genomicsdb-tiledb/core/src/metadata/metadata.cc /<>/genomicsdb-tiledb/core/src/metadata/metadata.cc: In member function ‘int Metadata::read(const char*, void**, size_t*)’: /<>/genomicsdb-tiledb/core/src/metadata/metadata.cc:105:6: warning: ‘unsigned char* MD5(const unsigned char*, size_t, unsigned char*)’ is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 105 | MD5((const unsigned char*) key, strlen(key)+1, (unsigned char*) coords); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/genomicsdb-tiledb/core/src/metadata/metadata.cc:36: /usr/include/openssl/md5.h:52:38: note: declared here 52 | OSSL_DEPRECATEDIN_3_0 unsigned char *MD5(const unsigned char *d, size_t n, | ^~~ /<>/genomicsdb-tiledb/core/src/metadata/metadata.cc: In member function ‘void Metadata::compute_array_coords(const char*, size_t, void*&, size_t&) const’: /<>/genomicsdb-tiledb/core/src/metadata/metadata.cc:418:8: warning: ‘unsigned char* MD5(const unsigned char*, size_t, unsigned char*)’ is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 418 | MD5(keys_c, key_size, coords_c); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/openssl/md5.h:52:38: note: declared here 52 | OSSL_DEPRECATEDIN_3_0 unsigned char *MD5(const unsigned char *d, size_t n, | ^~~ [ 22%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -c /<>/genomicsdb-tiledb/core/src/metadata/metadata_iterator.cc [ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -c /<>/genomicsdb-tiledb/core/src/misc/error.cc [ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -c /<>/genomicsdb-tiledb/core/src/misc/hilbert_curve.cc [ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -c /<>/genomicsdb-tiledb/core/src/misc/mem_utils.cc [ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -c /<>/genomicsdb-tiledb/core/src/misc/progress_bar.cc [ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -c /<>/genomicsdb-tiledb/core/src/misc/uri.cc [ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -c /<>/genomicsdb-tiledb/core/src/misc/utils.cc [ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -c /<>/src/main/cpp/src/genomicsdb/variant_storage_manager.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/src/genomicsdb/variant_storage_manager.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 26%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o -c /<>/genomicsdb-tiledb/core/src/storage_manager/storage_buffer.cc [ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -c /<>/src/main/cpp/src/genomicsdb/variant_field_data.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/src/genomicsdb/variant_field_data.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/memory:63, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -c /<>/src/main/cpp/src/genomicsdb/variant_array_schema.cc [ 26%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o -c /<>/genomicsdb-tiledb/core/src/storage_manager/storage_fs.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/src/genomicsdb/variant_array_schema.cc:25: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/genomicsdb/variant_array_schema.h:27, from /<>/src/main/cpp/src/genomicsdb/variant_array_schema.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 26%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o -c /<>/genomicsdb-tiledb/core/src/storage_manager/storage_manager.cc [ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -c /<>/src/main/cpp/src/genomicsdb/variant_field_handler.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/src/genomicsdb/variant_field_handler.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/main/cpp/src/genomicsdb/variant_field_handler.cc: In instantiation of ‘bool VariantFieldHandler::concatenate_field(const Variant&, const VariantQueryConfig&, unsigned int, const void**, unsigned int&) [with DataType = std::__cxx11::basic_string; CombineResultType = std::__cxx11::basic_string]’: /<>/src/main/cpp/src/genomicsdb/variant_field_handler.cc:973:16: required from here /<>/src/main/cpp/include/utils/headers.h:56:54: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘__gnu_cxx::__alloc_traits >, std::__cxx11::basic_string >::value_type’ {aka ‘class std::__cxx11::basic_string’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 56 | #define memcpy_s(dst, dst_size, src, src_size) memcpy((dst), (src), (src_size)) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/main/cpp/src/genomicsdb/variant_field_handler.cc:724:7: note: in expansion of macro ‘memcpy_s’ 724 | memcpy_s(&(m_concatenation_result[curr_result_size]), vec.size()*sizeof(DataType), &(vec[0]), | ^~~~~~~~ In file included from /usr/include/c++/12/string:53: /usr/include/c++/12/bits/basic_string.h:85:11: note: ‘__gnu_cxx::__alloc_traits >, std::__cxx11::basic_string >::value_type’ {aka ‘class std::__cxx11::basic_string’} declared here 85 | class basic_string | ^~~~~~~~~~~~ /<>/src/main/cpp/src/genomicsdb/variant_field_handler.cc: In instantiation of ‘bool VariantFieldHandler::collect_and_extend_fields(const Variant&, const VariantQueryConfig&, unsigned int, const void**, uint64_t&, bool, bool, bool) [with DataType = std::__cxx11::basic_string; CombineResultType = std::__cxx11::basic_string; uint64_t = long unsigned int]’: /<>/src/main/cpp/src/genomicsdb/variant_field_handler.cc:973:16: required from here /<>/src/main/cpp/include/utils/headers.h:56:54: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘__gnu_cxx::__alloc_traits >, std::__cxx11::basic_string >::value_type’ {aka ‘class std::__cxx11::basic_string’} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 56 | #define memcpy_s(dst, dst_size, src, src_size) memcpy((dst), (src), (src_size)) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/main/cpp/src/genomicsdb/variant_field_handler.cc:797:7: note: in expansion of macro ‘memcpy_s’ 797 | memcpy_s(&(m_extended_field_vector[extended_field_vector_idx]), field_ptr->length()*sizeof(DataType), | ^~~~~~~~ /usr/include/c++/12/bits/basic_string.h:85:11: note: ‘__gnu_cxx::__alloc_traits >, std::__cxx11::basic_string >::value_type’ {aka ‘class std::__cxx11::basic_string’} declared here 85 | class basic_string | ^~~~~~~~~~~~ [ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -c /<>/src/main/cpp/src/genomicsdb/variant.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/src/genomicsdb/variant.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 28%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o -c /<>/genomicsdb-tiledb/core/src/storage_manager/storage_manager_config.cc [ 28%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o -c /<>/genomicsdb-tiledb/core/src/storage_manager/storage_posixfs.cc [ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -c /<>/src/main/cpp/src/genomicsdb/query_variants.cc [ 28%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/core/include/array -I/<>/genomicsdb-tiledb/core/include/c_api -I/<>/genomicsdb-tiledb/core/include/codec -I/<>/genomicsdb-tiledb/core/include/expressions -I/<>/genomicsdb-tiledb/core/include/fragment -I/<>/genomicsdb-tiledb/core/include/metadata -I/<>/genomicsdb-tiledb/core/include/misc -I/<>/genomicsdb-tiledb/core/include/storage_manager -I/<>/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/<>/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -c /<>/genomicsdb-tiledb/core/src/codec/external/lz4/lz4.c In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/src/genomicsdb/query_variants.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/src/genomicsdb/query_variants.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 28%] Built target TILEDB_CORE_OBJECTS [ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -c /<>/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc [ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -c /<>/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc In file included from /<>/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -c /<>/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /<>/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/vid_mapper.h:27, from /<>/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -c /<>/src/main/cpp/src/loader/tiledb_loader_text_file.cc [ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -c /<>/src/main/cpp/src/loader/load_operators.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/src/loader/tiledb_loader_text_file.cc:32: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/include/loader/tiledb_loader_file_base.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader_text_file.h:33, from /<>/src/main/cpp/src/loader/tiledb_loader_text_file.cc:30: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:27, from /<>/src/main/cpp/src/loader/load_operators.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/vid_mapper.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -c /<>/src/main/cpp/src/loader/genomicsdb_importer.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:29, from /<>/src/main/cpp/include/loader/genomicsdb_importer.h:25, from /<>/src/main/cpp/src/loader/genomicsdb_importer.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/vid_mapper.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -c /<>/src/main/cpp/src/loader/tiledb_loader_file_base.cc [ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -c /<>/src/main/cpp/src/loader/tiledb_loader.cc [ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -c /<>/src/main/cpp/src/utils/memory_measure.cc [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -c /<>/src/main/cpp/src/utils/histogram.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:29, from /<>/src/main/cpp/src/loader/tiledb_loader.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/vid_mapper.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -c /<>/src/main/cpp/src/utils/vid_mapper_pb.cc [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -c /<>/src/main/cpp/src/utils/lut.cc [ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -c /<>/src/main/cpp/src/utils/known_field_info.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/src/utils/known_field_info.cc:27: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/gt_common.h:26, from /<>/src/main/cpp/include/vcf/known_field_info.h:26, from /<>/src/main/cpp/src/utils/known_field_info.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -c /<>/src/main/cpp/src/utils/vid_mapper.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/src/utils/vid_mapper.cc:33: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/vid_mapper.h:27, from /<>/src/main/cpp/src/utils/vid_mapper.cc:25: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -c /<>/src/main/cpp/src/utils/vid_mapper_sql.cc [ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -c /<>/src/main/cpp/src/utils/timer.cc [ 34%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -c /<>/src/main/cpp/src/utils/genomicsdb_logger.cc [ 34%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -c /<>/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/utils/alleles_combiner.h:26, from /<>/src/main/cpp/include/utils/alleles_combiner_template_definition.h:26, from /<>/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/core /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 34%] Linking CXX static library libgenomicsdb-tiledb.a cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -P CMakeFiles/tiledb_static.dir/cmake_clean_target.cmake cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_static.dir/link.txt --verbose=1 /usr/bin/ar qc libgenomicsdb-tiledb.a CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o /usr/bin/ranlib libgenomicsdb-tiledb.a make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 34%] Built target tiledb_static make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/core /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 35%] Linking CXX shared library libgenomicsdb-tiledb.so cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-tiledb.so -o libgenomicsdb-tiledb.so CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage_manager/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so [ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -c /<>/src/main/cpp/src/vcf/vcf_adapter.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 35%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -MF CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d -o CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -c /<>/genomicsdb-tiledb/test/src/array/test_array_schema.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 36%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -MF CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d -o CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -c /<>/genomicsdb-tiledb/test/src/benchmark/test_print_array_schema.cc [ 36%] Linking CXX executable test_print_array_schema cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_array_schema.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -o test_print_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 36%] Built target tiledb_shared make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 36%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -MF CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d -o CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -c /<>/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 36%] Built target test_print_array_schema make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 37%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -MF CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d -o CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -c /<>/genomicsdb-tiledb/test/src/benchmark/test_sparse_array_benchmark.cc [ 38%] Linking CXX executable test_print_book_keeping cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_book_keeping.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -o test_print_book_keeping ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx In function ‘read_entire_file’, inlined from ‘main’ at /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc:235:3: /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc:363:9: warning: ‘free’ called on unallocated object ‘buffer’ [-Wfree-nonheap-object] /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc: In function ‘main’: /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc:233:9: note: declared here make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 38%] Built target test_print_book_keeping make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 39%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -MF CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d -o CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -c /<>/genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc [ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -c /<>/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /<>/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /<>/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc:23: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -c /<>/src/main/cpp/src/vcf/vcf2binary.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /<>/src/main/cpp/src/vcf/vcf2binary.cc:29: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/vcf/vcf2binary.h:26, from /<>/src/main/cpp/src/vcf/vcf2binary.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 41%] Linking CXX executable test_array_schema cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -o test_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 41%] Building C object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/cc -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -c /<>/src/main/cpp/src/vcf/hfile_genomicsdb.c [ 42%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -c /<>/src/main/cpp/src/vcf/htslib_fs_adapter.cc /<>/src/main/cpp/src/vcf/htslib_fs_adapter.cc: In function ‘void* genomicsdb_filesystem_init(const char*, int)’: /<>/src/main/cpp/src/vcf/htslib_fs_adapter.cc:81:13: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘TileDB_Config’ {aka ‘struct TileDB_Config’}; use assignment or value-initialization instead [-Wclass-memaccess] 81 | memset(&tiledb_config, 0, sizeof(TileDB_Config)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/main/cpp/src/vcf/htslib_fs_adapter.cc:26: /<>/genomicsdb-tiledb/core/include/c_api/tiledb.h:93:16: note: ‘TileDB_Config’ {aka ‘struct TileDB_Config’} declared here 93 | typedef struct TileDB_Config { | ^~~~~~~~~~~~~ [ 42%] Linking CXX executable test_sparse_array_benchmark cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_benchmark.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -o test_sparse_array_benchmark ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 42%] Built target test_array_schema make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -MF CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d -o CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -c /<>/genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc [ 42%] Linking CXX executable test_array_iterator cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -o test_array_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: /tmp/ccvUVTLO.ltrans8.ltrans.o: in function `Catch::TestInvokerAsMethod<(anonymous namespace)::C_A_T_C_H_T_E_S_T_0>::invoke() const [clone .lto_priv.0]': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' [ 42%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -c /<>/src/main/cpp/src/config/variant_query_config.cc /usr/bin/ld: /tmp/ccxKd22O.ltrans4.ltrans.o: in function `ArrayIteratorFixture::ArrayIteratorFixture() [clone .lto_priv.0]': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 42%] Built target test_sparse_array_benchmark make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -MF CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d -o CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -c /<>/genomicsdb-tiledb/test/src/c_api/test_dense_array_api.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 42%] Built target test_array_iterator make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -MF CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d -o CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -c /<>/genomicsdb-tiledb/test/src/c_api/test_sparse_array_api.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/src/config/variant_query_config.cc:25: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /<>/src/main/cpp/src/config/variant_query_config.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 42%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -c /<>/src/main/cpp/src/config/genomicsdb_config_base.cc [ 42%] Linking CXX executable test_array_schema_api cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema_api.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -o test_array_schema_api ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 43%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -c /<>/src/main/cpp/src/config/json_config.cc /usr/bin/ld: /tmp/ccLWzeYP.ltrans4.ltrans.o: in function `ArraySchemaTestFixture::ArraySchemaTestFixture()': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 43%] Built target test_array_schema_api make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -MF CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d -o CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -c /<>/genomicsdb-tiledb/test/src/c_api/test_tiledb_utils.cc [ 43%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -c /<>/src/main/cpp/src/config/pb_config.cc [ 43%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -c /<>/src/main/cpp/src/api/annotation_service.cc [ 43%] Linking CXX executable test_dense_array_api cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_dense_array_api.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -o test_dense_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 44%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -c /<>/src/main/cpp/src/api/genomicsdb.cc [ 44%] Linking CXX executable test_sparse_array_api cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_api.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -o test_sparse_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /<>/src/main/cpp/src/api/genomicsdb.cc:39: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /<>/src/main/cpp/include/api/genomicsdb_exception.h:37, from /<>/src/main/cpp/include/api/genomicsdb.h:36, from /<>/src/main/cpp/src/api/genomicsdb.cc:33: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/bin/ld: /tmp/ccekDe2i.ltrans4.ltrans.o: in function `DenseArrayTestFixture::DenseArrayTestFixture()': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 44%] Built target test_dense_array_api make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -MF CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d -o CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -c /<>/genomicsdb-tiledb/test/src/codec/test_codec.cc [ 45%] Linking CXX executable test_tiledb_utils cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tiledb_utils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -o test_tiledb_utils ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx /usr/bin/ld: /tmp/ccAjTn9K.ltrans4.ltrans.o: in function `TempDir::create_temp_directory()': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 45%] Built target test_sparse_array_api make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -MF CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d -o CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -c /<>/genomicsdb-tiledb/test/src/codec/test_codec_filter.cc [ 45%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -c /<>/src/main/cpp/src/api/genomicsdb_field.cc /usr/bin/ld: /tmp/ccrTOb9k.ltrans3.ltrans.o: in function `TempDir::create_temp_directory()': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' [ 45%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -c /<>/src/main/cpp/src/api/genomicsdb_plink.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 45%] Built target test_tiledb_utils make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -MF CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d -o CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -c /<>/genomicsdb-tiledb/test/src/expressions/test_expressions.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/src/api/genomicsdb_plink.cc:39: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /<>/src/main/cpp/include/api/genomicsdb_exception.h:37, from /<>/src/main/cpp/include/api/genomicsdb.h:36, from /<>/src/main/cpp/include/api/genomicsdb_plink.h:35, from /<>/src/main/cpp/src/api/genomicsdb_plink.cc:33: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/main/cpp/src/api/genomicsdb_plink.cc: In member function ‘virtual void GenomicsDBPlinkProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&, bool)’: /<>/src/main/cpp/src/api/genomicsdb_plink.cc:366:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | if(g < 0 || g >= vec.size()) { | ~~^~~~~~~~~~~~~ /<>/src/main/cpp/src/api/genomicsdb_plink.cc: In member function ‘void GenomicsDBPlinkProcessor::advance_state()’: /<>/src/main/cpp/src/api/genomicsdb_plink.cc:653:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 653 | for(int i = 0; i < num_rows; i++) { | ~~^~~~~~~~~~ [ 45%] Linking CXX executable test_codec cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -o test_codec ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx In file included from /usr/include/c++/12/string:40: In function ‘std::char_traits::assign(char&, char const&)’, inlined from ‘std::__cxx11::basic_string, std::allocator >::push_back(char)’ at /usr/include/c++/12/bits/basic_string.h:1529:21, inlined from ‘GenomicsDBPlinkProcessor::process(std::__cxx11::basic_string, std::allocator > const&, long const*, genomic_interval_t const&, std::vector > const&, bool)::{lambda(std::vector > const&, unsigned long)#3}::operator()(std::vector > const&, unsigned long) const’ at /<>/src/main/cpp/src/api/genomicsdb_plink.cc:625:26, inlined from ‘std::__invoke_impl, std::allocator > const&, long const*, genomic_interval_t const&, std::vector > const&, bool)::{lambda(std::vector > const&, unsigned long)#3}&, std::vector > const&, unsigned long>(std::__invoke_other, GenomicsDBPlinkProcessor::process(std::__cxx11::basic_string, std::allocator > const&, long const*, genomic_interval_t const&, std::vector > const&, bool)::{lambda(std::vector > const&, unsigned long)#3}&, std::vector > const&, unsigned long&&)void’ at /usr/include/c++/12/bits/invoke.h:61:36, inlined from ‘std::__invoke_r, std::allocator > const&, long const*, genomic_interval_t const&, std::vector > const&, bool)::{lambda(std::vector > const&, unsigned long)#3}&, std::vector > const&, unsigned long>(GenomicsDBPlinkProcessor::process(std::__cxx11::basic_string, std::allocator > const&, long const*, genomic_interval_t const&, std::vector > const&, bool)::{lambda(std::vector > const&, unsigned long)#3}&, std::vector > const&, unsigned long&&)std::enable_if, std::allocator > const&, long const*, genomic_interval_t const&, std::vector > const&, bool)::{lambda(std::vector > const&, unsigned long)#3}&, std::vector > const&, unsigned long>, void>::type’ at /usr/include/c++/12/bits/invoke.h:111:28, inlined from ‘std::_Function_handler > const&, unsigned long), GenomicsDBPlinkProcessor::process(std::__cxx11::basic_string, std::allocator > const&, long const*, genomic_interval_t const&, std::vector > const&, bool)::{lambda(std::vector > const&, unsigned long)#3}>::_M_invoke(std::_Any_data const&, std::vector > const&, unsigned long&&)’ at /usr/include/c++/12/bits/std_function.h:290:30: /usr/include/c++/12/bits/char_traits.h:354:14: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized] 354 | __c1 = __c2; | ~~~~~^~~~~~ /<>/src/main/cpp/src/api/genomicsdb_plink.cc: In function ‘std::_Function_handler > const&, unsigned long), GenomicsDBPlinkProcessor::process(std::__cxx11::basic_string, std::allocator > const&, long const*, genomic_interval_t const&, std::vector > const&, bool)::{lambda(std::vector > const&, unsigned long)#3}>::_M_invoke(std::_Any_data const&, std::vector > const&, unsigned long&&)’: /<>/src/main/cpp/src/api/genomicsdb_plink.cc:606:12: note: ‘p’ was declared here 606 | char p; | ^ make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 45%] Built target test_codec make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -MF CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d -o CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -c /<>/genomicsdb-tiledb/test/src/misc/test_mem_utils.cc [ 46%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -c /<>/obj-s390x-linux-gnu/src/resources/genomicsdb_coordinates.pb.cc [ 46%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -c /<>/obj-s390x-linux-gnu/src/resources/genomicsdb_callsets_mapping.pb.cc [ 46%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -c /<>/obj-s390x-linux-gnu/src/resources/genomicsdb_export_config.pb.cc [ 47%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -c /<>/obj-s390x-linux-gnu/src/resources/genomicsdb_import_config.pb.cc [ 47%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -c /<>/obj-s390x-linux-gnu/src/resources/genomicsdb_vid_mapping.pb.cc [ 48%] Linking CXX executable test_codec_filter cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -o test_codec_filter ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 48%] Built target GenomicsDB_library_object_files make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -MF CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d -o CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -c /<>/genomicsdb-tiledb/test/src/misc/test_uri.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 49%] Built target test_codec_filter make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -MF CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d -o CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -c /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc [ 50%] Linking CXX executable test_expressions cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_expressions.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -o test_expressions ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 51%] Linking CXX executable test_mem_utils cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mem_utils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -o test_mem_utils ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 51%] Built target test_mem_utils make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' In file included from /usr/include/string.h:535, from /usr/include/c++/12/cstring:42, from /usr/include/catch2/catch.hpp:5717, from /<>/genomicsdb-tiledb/test/include/catch2/catch.h:37, from /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:38: In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0()’ at /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:183:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0()’: /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object ‘j’ of size 8 180 | double j = 0.1, k = 0.2; | ^ In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0()’ at /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:185:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0()’: /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object ‘k’ of size 8 180 | double j = 0.1, k = 0.2; | ^ In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0()’ at /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:190:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0()’: /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object ‘j’ of size 8 180 | double j = 0.1, k = 0.2; | ^ In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0()’ at /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:191:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0()’: /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object ‘k’ of size 8 180 | double j = 0.1, k = 0.2; | ^ In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0()’ at /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:195:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0()’: /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object ‘j’ of size 8 180 | double j = 0.1, k = 0.2; | ^ In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0()’ at /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:197:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0()’: /<>/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object ‘k’ of size 8 180 | double j = 0.1, k = 0.2; | ^ [ 51%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -MF CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d -o CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -c /<>/genomicsdb-tiledb/test/src/storage_manager/test_posixfs.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 51%] Built target test_expressions make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 51%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/<>/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/test/include/benchmark -I/<>/genomicsdb-tiledb/test/include/c_api -I/<>/genomicsdb-tiledb/test/include/catch2 -I/<>/genomicsdb-tiledb/test/../core/include/array -I/<>/genomicsdb-tiledb/test/../core/include/c_api -I/<>/genomicsdb-tiledb/test/../core/include/codec -I/<>/genomicsdb-tiledb/test/../core/include/expressions -I/<>/genomicsdb-tiledb/test/../core/include/fragment -I/<>/genomicsdb-tiledb/test/../core/include/metadata -I/<>/genomicsdb-tiledb/test/../core/include/misc -I/<>/genomicsdb-tiledb/test/../core/include/storage_manager -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -MF CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d -o CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -c /<>/genomicsdb-tiledb/test/src/storage_manager/test_storage_buffer.cc [ 51%] Linking CXX executable test_uri cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_uri.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -o test_uri ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 51%] Built target test_uri make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -MF CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_aio_read_dense.cc [ 52%] Linking CXX executable tiledb_array_aio_read_dense cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_read_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -o tiledb_array_aio_read_dense ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx [ 52%] Linking CXX executable test_utils cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_utils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -o test_utils ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0’ at /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:183:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘__builtin_memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0’: /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object ‘j’ of size 8 In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0’ at /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:185:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘__builtin_memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0’: /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object ‘k’ of size 8 In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0’ at /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:190:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘__builtin_memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0’: /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object ‘j’ of size 8 In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0’ at /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:191:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘__builtin_memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0’: /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object ‘k’ of size 8 In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0’ at /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:195:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘__builtin_memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0’: /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:10: note: source object ‘j’ of size 8 In function ‘memcpy’, inlined from ‘C_A_T_C_H_T_E_S_T_0’ at /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:197:11: /usr/include/s390x-linux-gnu/bits/string_fortified.h:29:33: warning: ‘__builtin_memcpy’ reading 16 bytes from a region of size 8 [-Wstringop-overread] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function ‘C_A_T_C_H_T_E_S_T_0’: /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/src/misc/test_utils.cc:180:19: note: source object ‘k’ of size 8 /usr/bin/ld: /tmp/cc91jqXr.ltrans6.ltrans.o: in function `Catch::TestInvokerAsMethod<(anonymous namespace)::C_A_T_C_H_T_E_S_T_6>::invoke() const [clone .lto_priv.0]': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 52%] Built target test_utils make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -MF CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_aio_write_dense.cc [ 53%] Linking CXX executable tiledb_array_aio_write_dense cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_write_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -o tiledb_array_aio_write_dense ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 53%] Built target tiledb_array_aio_read_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -MF CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d -o CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_consolidate.cc [ 53%] Linking CXX executable tiledb_array_consolidate cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_consolidate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -o tiledb_array_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 53%] Built target tiledb_array_aio_write_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 54%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -MF CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d -o CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_create_dense.cc [ 54%] Linking CXX executable tiledb_array_create_dense cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -o tiledb_array_create_dense ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 54%] Built target tiledb_array_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 54%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -MF CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d -o CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_create_sparse.cc [ 55%] Linking CXX executable tiledb_array_create_sparse cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_sparse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -o tiledb_array_create_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx [ 55%] Linking CXX executable test_posixfs cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_posixfs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -o test_posixfs ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx [ 56%] Linking CXX executable test_storage_buffer cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_storage_buffer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -o test_storage_buffer ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -ldl -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 56%] Built target tiledb_array_create_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -MF CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d -o CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_iterator_dense.cc [ 56%] Linking CXX executable tiledb_array_iterator_dense cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -o tiledb_array_iterator_dense ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 56%] Built target tiledb_array_create_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse.cc [ 57%] Linking CXX executable tiledb_array_iterator_sparse cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -o tiledb_array_iterator_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx /usr/bin/ld: /tmp/ccGQndVp.ltrans4.ltrans.o: in function `PosixFSTestFixture::PosixFSTestFixture() [clone .lto_priv.0]': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 57%] Built target test_posixfs make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse_filter.cc [ 58%] Linking CXX executable tiledb_array_iterator_sparse_filter cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -o tiledb_array_iterator_sparse_filter ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx /usr/bin/ld: /tmp/ccmJXQsZ.ltrans3.ltrans.o: in function `TempDir::create_temp_directory()': /usr/src/genomicsdb-1.4.4-2build1/genomicsdb-tiledb/test/include/catch2/catch.h:99: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 58%] Built target test_storage_buffer make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_dense.cc [ 58%] Linking CXX executable tiledb_array_parallel_consolidate_dense cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -o tiledb_array_parallel_consolidate_dense ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 58%] Built target tiledb_array_iterator_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_sparse.cc [ 59%] Linking CXX executable tiledb_array_parallel_consolidate_sparse cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -o tiledb_array_parallel_consolidate_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 59%] Built target tiledb_array_iterator_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_1.cc [ 60%] Linking CXX executable tiledb_array_parallel_read_dense_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -o tiledb_array_parallel_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 60%] Built target tiledb_array_iterator_sparse_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 60%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_2.cc [ 60%] Linking CXX executable tiledb_array_parallel_read_dense_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -o tiledb_array_parallel_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 60%] Built target tiledb_array_parallel_consolidate_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 60%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_mpi_io_dense.cc [ 61%] Linking CXX executable tiledb_array_parallel_read_mpi_io_dense cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -o tiledb_array_parallel_read_mpi_io_dense ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 61%] Built target tiledb_array_parallel_read_mpi_io_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 61%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_1.cc [ 61%] Linking CXX executable tiledb_array_parallel_read_sparse_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -o tiledb_array_parallel_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 61%] Built target tiledb_array_parallel_consolidate_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_2.cc [ 62%] Linking CXX executable tiledb_array_parallel_read_sparse_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -o tiledb_array_parallel_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 62%] Built target tiledb_array_parallel_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_1.cc [ 63%] Linking CXX executable tiledb_array_parallel_write_dense_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -o tiledb_array_parallel_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 63%] Built target tiledb_array_parallel_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 63%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_2.cc [ 63%] Linking CXX executable tiledb_array_parallel_write_dense_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -o tiledb_array_parallel_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 63%] Built target tiledb_array_parallel_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 64%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_1.cc [ 64%] Linking CXX executable tiledb_array_parallel_write_sparse_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -o tiledb_array_parallel_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 64%] Built target tiledb_array_parallel_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 64%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_2.cc [ 65%] Linking CXX executable tiledb_array_parallel_write_sparse_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -o tiledb_array_parallel_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 65%] Built target tiledb_array_parallel_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 65%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -MF CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d -o CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_primitive.cc [ 65%] Linking CXX executable tiledb_array_primitive cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_primitive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -o tiledb_array_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 65%] Built target tiledb_array_parallel_write_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_1.cc [ 66%] Linking CXX executable tiledb_array_read_dense_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -o tiledb_array_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 66%] Built target tiledb_array_parallel_write_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_2.cc [ 67%] Linking CXX executable tiledb_array_read_dense_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -o tiledb_array_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 67%] Built target tiledb_array_parallel_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 67%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -MF CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d -o CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_3.cc [ 67%] Linking CXX executable tiledb_array_read_dense_3 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -o tiledb_array_read_dense_3 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 67%] Built target tiledb_array_primitive make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 67%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_sorted.cc [ 68%] Linking CXX executable tiledb_array_read_dense_sorted cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_sorted.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -o tiledb_array_read_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 68%] Built target tiledb_array_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_1.cc [ 68%] Linking CXX executable tiledb_array_read_sparse_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -o tiledb_array_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 68%] Built target tiledb_array_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_2.cc [ 69%] Linking CXX executable tiledb_array_read_sparse_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -o tiledb_array_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 69%] Built target tiledb_array_read_dense_3 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_1.cc [ 70%] Linking CXX executable tiledb_array_read_sparse_filter_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -o tiledb_array_read_sparse_filter_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 70%] Built target tiledb_array_read_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_2.cc [ 70%] Linking CXX executable tiledb_array_read_sparse_filter_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -o tiledb_array_read_sparse_filter_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 70%] Built target tiledb_array_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -MF CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_sorted.cc [ 71%] Linking CXX executable tiledb_array_read_sparse_sorted cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -o tiledb_array_read_sparse_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 71%] Built target tiledb_array_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -MF CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d -o CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_1.cc [ 72%] Linking CXX executable tiledb_array_update_dense_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -o tiledb_array_update_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 72%] Built target tiledb_array_read_sparse_filter_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -MF CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d -o CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_2.cc [ 72%] Linking CXX executable tiledb_array_update_dense_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -o tiledb_array_update_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 72%] Built target tiledb_array_read_sparse_filter_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 73%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -MF CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_1.cc [ 73%] Linking CXX executable tiledb_array_update_sparse_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -o tiledb_array_update_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 73%] Built target tiledb_array_read_sparse_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 73%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -MF CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_2.cc [ 74%] Linking CXX executable tiledb_array_update_sparse_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -o tiledb_array_update_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 74%] Built target tiledb_array_update_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_1.cc [ 74%] Linking CXX executable tiledb_array_write_dense_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -o tiledb_array_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 74%] Built target tiledb_array_update_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_2.cc [ 75%] Linking CXX executable tiledb_array_write_dense_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -o tiledb_array_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 75%] Built target tiledb_array_update_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_sorted.cc [ 75%] Linking CXX executable tiledb_array_write_dense_sorted cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_sorted.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -o tiledb_array_write_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 75%] Built target tiledb_array_update_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_1.cc [ 76%] Linking CXX executable tiledb_array_write_sparse_1 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -o tiledb_array_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 76%] Built target tiledb_array_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_2.cc [ 77%] Linking CXX executable tiledb_array_write_sparse_2 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -o tiledb_array_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 77%] Built target tiledb_array_write_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 77%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -MF CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_3.cc [ 77%] Linking CXX executable tiledb_array_write_sparse_3 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -o tiledb_array_write_sparse_3 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 77%] Built target tiledb_array_write_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -MF CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_4.cc [ 78%] Linking CXX executable tiledb_array_write_sparse_4 cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -o tiledb_array_write_sparse_4 ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 78%] Built target tiledb_array_write_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -MF CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d -o CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_catching_errors.cc [ 79%] Linking CXX executable tiledb_catching_errors cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_catching_errors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -o tiledb_catching_errors ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 79%] Built target tiledb_array_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -MF CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d -o CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_clear_delete_move.cc [ 79%] Linking CXX executable tiledb_clear_delete_move cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_clear_delete_move.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -o tiledb_clear_delete_move ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 79%] Built target tiledb_array_write_sparse_3 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -MF CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d -o CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_config.cc [ 80%] Linking CXX executable tiledb_config cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_config.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -o tiledb_config ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 80%] Built target tiledb_catching_errors make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -MF CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d -o CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_delete.cc [ 81%] Linking CXX executable tiledb_delete cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_delete.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -o tiledb_delete ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 81%] Built target tiledb_clear_delete_move make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 81%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -MF CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d -o CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_ls.cc [ 81%] Linking CXX executable tiledb_ls cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -o tiledb_ls ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 81%] Built target tiledb_array_write_sparse_4 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 82%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -MF CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d -o CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_ls_workspaces.cc [ 82%] Linking CXX executable tiledb_ls_workspaces cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls_workspaces.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -o tiledb_ls_workspaces ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 82%] Built target tiledb_config make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 82%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -MF CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d -o CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_metadata_consolidate.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 82%] Built target tiledb_delete make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 83%] Linking CXX executable tiledb_metadata_consolidate cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake --color= cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_consolidate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -o tiledb_metadata_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 83%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -MF CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d -o CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_metadata_create.cc [ 83%] Linking CXX executable tiledb_metadata_create cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_create.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -o tiledb_metadata_create ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 83%] Built target tiledb_ls make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 83%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -MF CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d -o CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_metadata_iterator.cc [ 84%] Linking CXX executable tiledb_metadata_iterator cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -o tiledb_metadata_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 84%] Built target tiledb_ls_workspaces make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 84%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -MF CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d -o CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_metadata_primitive.cc [ 84%] Linking CXX executable tiledb_metadata_primitive cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_primitive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -o tiledb_metadata_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 84%] Built target tiledb_metadata_create make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 85%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -MF CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d -o CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_metadata_read.cc [ 85%] Linking CXX executable tiledb_metadata_read cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_read.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -o tiledb_metadata_read ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 85%] Built target tiledb_metadata_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 85%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -MF CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d -o CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_metadata_update.cc [ 86%] Linking CXX executable tiledb_metadata_update cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_update.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -o tiledb_metadata_update ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 86%] Built target tiledb_metadata_iterator make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 86%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -MF CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d -o CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_metadata_write.cc [ 86%] Linking CXX executable tiledb_metadata_write cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_write.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -o tiledb_metadata_write ../core/libgenomicsdb-tiledb.a /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libuuid.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so -ldl /usr/lib/s390x-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 86%] Built target tiledb_metadata_primitive make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 86%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/usr/include/muparserx -I/<>/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wno-literal-suffix -fopenmp -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -MF CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d -o CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -c /<>/genomicsdb-tiledb/examples/src/tiledb_workspace_group_create.cc [ 87%] Linking CXX executable tiledb_workspace_group_create cd /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_workspace_group_create.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects 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"Unix Makefiles" /<> /<>/src/main /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/src/main /<>/obj-s390x-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 87%] Linking CXX shared library libgenomicsdb.so cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledbgenomicsdb.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdb.so.0 -o libgenomicsdb.so.1.4.4 CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o 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CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -Wl,-rpath,/usr/lib/s390x-linux-gnu/openmpi/lib:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core: /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/vcf/vcf2binary.cc:36:12: warning: type of ‘g_show_import_progress’ does not match original declaration [-Wlto-type-mismatch] /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: type ‘bool’ should match type ‘int’ /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: ‘g_show_import_progress’ was previously declared here /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: code 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CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o /usr/bin/ranlib libgenomicsdb.a make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 88%] Built target genomicsdb make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/test/cpp /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/src/test/cpp /<>/obj-s390x-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 88%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o -MF CMakeFiles/ctests.dir/src/ctest_main.cc.o.d -o CMakeFiles/ctests.dir/src/ctest_main.cc.o -c /<>/src/test/cpp/src/ctest_main.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 88%] Built target tiledb_metadata_update make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/test/cpp /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/src/test/cpp /<>/obj-s390x-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 89%] Building CXX object src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o -MF CMakeFiles/api_tests.dir/src/ctest_main.cc.o.d -o CMakeFiles/api_tests.dir/src/ctest_main.cc.o -c /<>/src/test/cpp/src/ctest_main.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 89%] Built target tiledb_metadata_write make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/tools /<>/obj-s390x-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 89%] Building CXX object tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/tools/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -MF CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o.d -o CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -c /<>/tools/src/create_genomicsdb_workspace.cc [ 90%] Linking CXX executable create_genomicsdb_workspace cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_genomicsdb_workspace.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -o create_genomicsdb_workspace -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 90%] Built target create_genomicsdb_workspace make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/tools /<>/obj-s390x-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 90%] Building CXX object tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/tools/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -MF CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o.d -o CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -c /<>/tools/src/gt_mpi_gather.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/tools/src/gt_mpi_gather.cc:30: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/tools/src/gt_mpi_gather.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 90%] Linking CXX executable gt_mpi_gather cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/gt_mpi_gather.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -o gt_mpi_gather -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/cmake -E cmake_symlink_library libgenomicsdb.so.1.4.4 libgenomicsdb.so.0 libgenomicsdb.so make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 90%] Built target tiledbgenomicsdb make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/tools /<>/obj-s390x-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 90%] Building CXX object tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/tools/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -MF CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o.d -o CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -c /<>/tools/src/vcf2genomicsdb_init.cc [ 90%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o -MF CMakeFiles/ctests.dir/src/test_config.cc.o.d -o CMakeFiles/ctests.dir/src/test_config.cc.o -c /<>/src/test/cpp/src/test_config.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 90%] Built target gt_mpi_gather make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/tools /<>/obj-s390x-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 90%] Building CXX object tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/tools/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -MF CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o.d -o CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -c /<>/tools/src/vcf2genomicsdb.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:29, from /<>/tools/src/vcf2genomicsdb.cc:25: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/vcf/vcf2binary.h:26, from /<>/tools/src/vcf2genomicsdb.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 90%] Building CXX object src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -MF CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d -o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -c /<>/src/test/cpp/src/test_genomicsdb_api.cc [ 90%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o -MF CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o -c /<>/src/test/cpp/src/test_non_diploid_mapper.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/test/cpp/src/test_non_diploid_mapper.cc:26: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/catch2/catch.hpp:477, from /<>/src/test/cpp/src/test_non_diploid_mapper.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/test/cpp/src/test_genomicsdb_api.cc:28: /<>/src/test/cpp/src/test_genomicsdb_api.cc: In member function ‘virtual void OneQueryIntervalProcessor::process(const std::string&, const int64_t*, const genomic_interval_t&, const std::vector&)’: /<>/src/test/cpp/src/test_genomicsdb_api.cc:296:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 296 | CHECK(genomic_fields.size() == m_attributes_size + 2); // Add '2' for REF and ALT fields | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/test/cpp/src/test_genomicsdb_api.cc: In function ‘void C_A_T_C_H_T_E_S_T_40()’: /<>/src/test/cpp/src/test_genomicsdb_api.cc:589:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 589 | CHECK(num_threads == threads.size()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ [ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o -MF CMakeFiles/ctests.dir/src/test_multid_vector.cc.o.d -o CMakeFiles/ctests.dir/src/test_multid_vector.cc.o -c /<>/src/test/cpp/src/test_multid_vector.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /<>/src/test/cpp/src/test_multid_vector.cc:27: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/catch2/catch.hpp:477, from /<>/src/test/cpp/src/test_multid_vector.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 91%] Linking CXX executable vcf2genomicsdb_init cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb_init.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -o vcf2genomicsdb_init -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl [ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o -MF CMakeFiles/ctests.dir/src/test_pb.cc.o.d -o CMakeFiles/ctests.dir/src/test_pb.cc.o -c /<>/src/test/cpp/src/test_pb.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 91%] Built target vcf2genomicsdb_init make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/tools /<>/obj-s390x-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 91%] Building CXX object tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/tools/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -MF CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o.d -o CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -c /<>/tools/src/vcfdiff.cc [ 92%] Linking CXX executable vcf2genomicsdb cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -o vcf2genomicsdb -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/tools/include/vcfdiff.h:31, from /<>/tools/src/vcfdiff.cc:25: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/bits/stl_tree.h:63, from /usr/include/c++/12/map:60, from /usr/lib/s390x-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:42, from /usr/lib/s390x-linux-gnu/openmpi/include/mpi.h:2887, from /<>/tools/src/vcfdiff.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/vcf/vcf2binary.cc:36:12: warning: type of ‘g_show_import_progress’ does not match original declaration [-Wlto-type-mismatch] /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: type ‘bool’ should match type ‘int’ /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: ‘g_show_import_progress’ was previously declared here /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used [ 92%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o -MF CMakeFiles/ctests.dir/src/test_logger.cc.o.d -o CMakeFiles/ctests.dir/src/test_logger.cc.o -c /<>/src/test/cpp/src/test_logger.cc [ 92%] Linking CXX executable api_tests cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/api_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now CMakeFiles/api_tests.dir/src/ctest_main.cc.o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -o api_tests -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl [ 93%] Linking CXX executable vcfdiff cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdiff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -o vcfdiff -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl [ 94%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -MF CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o.d -o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -c /<>/src/test/cpp/src/test_columnar_gvcf_iterator.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 94%] Built target vcfdiff make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/tools /<>/obj-s390x-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 95%] Building CXX object tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/tools/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -MF CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o.d -o CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -c /<>/tools/src/vcf_histogram.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 95%] Built target vcf2genomicsdb make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/tools /<>/obj-s390x-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 96%] Building CXX object tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/tools/include -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -MF CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d -o CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -c /<>/tools/src/consolidate_genomicsdb_array.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/test/cpp/src/test_columnar_gvcf_iterator.cc:30: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/catch2/catch.hpp:477, from /<>/src/test/cpp/src/test_columnar_gvcf_iterator.cc:28: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /<>/src/test/cpp/src/test_columnar_gvcf_iterator.cc: In function ‘void C_A_T_C_H_T_E_S_T_2()’: /<>/src/test/cpp/src/test_columnar_gvcf_iterator.cc:390:59: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 390 | REQUIRE(bcf_hdr_nsamples(bag.hdr[GoldTestEnum::GOLD]) == query_config.get_num_rows_to_query()); In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:29, from /<>/tools/src/vcf_histogram.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/vcf/vcf2binary.h:26, from /<>/tools/src/vcf_histogram.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:29, from /<>/tools/src/consolidate_genomicsdb_array.cc:28: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/tools/src/consolidate_genomicsdb_array.cc:25: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/cmake -E tar xzf /<>/src/test/cpp/../inputs/test.tgz make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 96%] Built target api_tests make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/example /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/example /<>/obj-s390x-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 96%] Building CXX object example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o cd /<>/obj-s390x-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -MF CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -c /<>/example/src/test_genomicsdb_bcf_generator.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /<>/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /<>/example/src/test_genomicsdb_bcf_generator.cc:25: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/example/src/test_genomicsdb_bcf_generator.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 96%] Linking CXX executable test_genomicsdb_bcf_generator cd /<>/obj-s390x-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_bcf_generator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -o test_genomicsdb_bcf_generator -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl [ 96%] Linking CXX executable consolidate_genomicsdb_array cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/consolidate_genomicsdb_array.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -o consolidate_genomicsdb_array -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl [ 96%] Linking CXX executable vcf_histogram cd /<>/obj-s390x-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf_histogram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -o vcf_histogram -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/vcf/vcf2binary.cc:36:12: warning: type of ‘g_show_import_progress’ does not match original declaration [-Wlto-type-mismatch] /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: type ‘bool’ should match type ‘int’ /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: ‘g_show_import_progress’ was previously declared here /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/vcf/vcf2binary.cc:36:12: warning: type of ‘g_show_import_progress’ does not match original declaration [-Wlto-type-mismatch] /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: type ‘bool’ should match type ‘int’ /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: ‘g_show_import_progress’ was previously declared here /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used [ 96%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -MF CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d -o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -c /<>/src/test/cpp/src/test_htslib_plugin.cc [ 96%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -MF CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d -o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -c /<>/src/test/cpp/src/test_alleles_combiner.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 96%] Built target consolidate_genomicsdb_array make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/example /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/example /<>/obj-s390x-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 97%] Building CXX object example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o cd /<>/obj-s390x-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -MF CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d -o CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -c /<>/example/src/test_genomicsdb_importer.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:29, from /<>/src/main/cpp/include/loader/genomicsdb_importer.h:25, from /<>/example/src/test_genomicsdb_importer.cc:25: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/example/src/test_genomicsdb_importer.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 97%] Built target vcf_histogram [ 98%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -MF CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -c /<>/src/test/cpp/src/test_gt_remapper.cc make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [ 98%] Built target test_genomicsdb_bcf_generator make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend make[4]: Entering directory '/<>/obj-s390x-linux-gnu' cd /<>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/main /<>/obj-s390x-linux-gnu /<>/obj-s390x-linux-gnu/src/main /<>/obj-s390x-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Entering directory '/<>/obj-s390x-linux-gnu' [ 98%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -c /<>/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:28: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /<>/genomicsdb-tiledb/core/include/c_api/tiledb.h:43, from /<>/genomicsdb-tiledb/core/include/c_api/tiledb_utils.h:38, from /<>/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:24: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 98%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -c /<>/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_storage_manager.h:29, from /<>/src/main/cpp/include/genomicsdb/query_variants.h:27, from /<>/src/main/cpp/include/loader/load_operators.h:27, from /<>/src/main/cpp/include/loader/tiledb_loader.h:29, from /<>/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:24: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/vcf/vcf2binary.h:26, from /<>/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:23: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 99%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -c /<>/src/main/jni/src/genomicsdb_GenomicsDBQuery.cc [ 99%] Linking CXX executable test_genomicsdb_importer cd /<>/obj-s390x-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_importer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -o test_genomicsdb_importer -Wl,-rpath,/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/<>/obj-s390x-linux-gnu/genomicsdb-htslib:/usr/lib/s390x-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/vcf/vcf2binary.cc:36:12: warning: type of ‘g_show_import_progress’ does not match original declaration [-Wlto-type-mismatch] /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: type ‘bool’ should match type ‘int’ /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: ‘g_show_import_progress’ was previously declared here /usr/src/genomicsdb-1.4.4-2build1/src/main/cpp/src/loader/tiledb_loader.cc:30:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used [ 99%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -c /<>/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc In file included from /<>/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /<>/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /<>/src/main/cpp/include/genomicsdb/variant.h:28, from /<>/src/main/cpp/include/query_operations/variant_operations.h:26, from /<>/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, from /<>/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, from /<>/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc:25: /<>/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ In file included from /usr/include/c++/12/string:45, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from /<>/src/main/cpp/include/utils/headers.h:30, from /<>/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 99%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/<>/obj-s390x-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/<>/tests/\" -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/src/test/cpp/Catch -I/<>/src/test/cpp/INTERFACE -I/<>/src/test/cpp/Catch2/single_include -I/<>/obj-s390x-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o -MF CMakeFiles/ctests.dir/src/test_bgen.cc.o.d -o CMakeFiles/ctests.dir/src/test_bgen.cc.o -c /<>/src/test/cpp/src/test_bgen.cc [ 99%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.4.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/<>/genomicsdb-htslib -I/<>/genomicsdb-tiledb -I/<>/genomicsdb-tiledb/core/include/c_api -I/usr/lib/s390x-linux-gnu/openmpi/include -I/usr/lib/s390x-linux-gnu/openmpi/include/openmpi -I/<>/src/main/cpp/include/genomicsdb -I/<>/src/main/cpp/include/loader -I/<>/src/main/cpp/include/query_operations -I/<>/src/main/cpp/include/utils -I/<>/src/main/cpp/include/vcf -I/<>/src/main/cpp/include/config -I/<>/src/main/cpp/include/api -I/<>/src/test/cpp/include -I/<>/obj-s390x-linux-gnu/src/resources -I/<>/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -c /<>/src/main/jni/src/genomicsdb_jni_init.cc [ 99%] Linking CXX executable ctests cd /<>/obj-s390x-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ctests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects 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[100%] Linking CXX shared library libgenomicsdbjni.so cd /<>/obj-s390x-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdbjni.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/genomicsdb-1.4.4-2build1 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdbjni.so -o libgenomicsdbjni.so CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -Wl,-rpath,/<>/obj-s390x-linux-gnu/src/main:/<>/obj-s390x-linux-gnu/genomicsdb-tiledb/core:/usr/lib/s390x-linux-gnu/openmpi/lib:/<>/obj-s390x-linux-gnu/genomicsdb-htslib libgenomicsdb.so.1.4.4 ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libmuparserx.so /usr/lib/s390x-linux-gnu/libprotobuf.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/s390x-linux-gnu/openmpi/lib/libmpi.so /usr/lib/s390x-linux-gnu/libssl.so /usr/lib/s390x-linux-gnu/libcrypto.so /usr/lib/s390x-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/s390x-linux-gnu/libbz2.so /usr/lib/s390x-linux-gnu/libcurl.so /usr/lib/s390x-linux-gnu/liblzma.so /usr/lib/s390x-linux-gnu/librt.a /usr/lib/s390x-linux-gnu/libfmt.so.9.1.0 make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target genomicsdbjni make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target test_genomicsdb_importer make[4]: Leaving directory '/<>/obj-s390x-linux-gnu' [100%] Built target ctests make[3]: Leaving directory '/<>/obj-s390x-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-s390x-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-s390x-linux-gnu' make[1]: Leaving directory '/<>' jh_build -a -O--buildsystem=cmake dh_auto_test -a -O--buildsystem=cmake cd obj-s390x-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/<>/obj-s390x-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/<>/obj-s390x-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/obj-s390x-linux-gnu/DartConfiguration.tcl Test project /<>/obj-s390x-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_array_schema 1: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_array_schema 1: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 1: Test timeout computed to be: 10000000 test 2 Start 2: test_print_array_schema 2: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_print_array_schema 2: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 2: Test timeout computed to be: 10000000 test 3 Start 3: test_print_book_keeping 3: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_print_book_keeping 3: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 3: Test timeout computed to be: 10000000 test 4 Start 4: test_sparse_array_benchmark 4: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_sparse_array_benchmark 4: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 4: Test timeout computed to be: 10000000 1: [TileDB::ArraySchema] Error: Cannot set attributes; No attributes given. 1: [TileDB::ArraySchema] Error: Cannot set attributes; The number of attributes must be positive. 1: [TileDB::ArraySchema] Error: Cannot set attributes; Duplicate attribute names. 1: [TileDB::ArraySchema] Error: Cannot set cell order; Invalid cell order. 1: [TileDB::ArraySchema] Error: Unsupported. For a given VAR attribute, both compression and offsets_compression have to either have compression or not 1: . 1: [TileDB::ArraySchema] Error: Cannot set dimensions; No dimensions given. 1: [TileDB::ArraySchema] Error: Cannot set dimensions; The number of dimensions must be positive. 1: [TileDB::ArraySchema] Error: Cannot set dimensions; Duplicate dimension names. 1: [TileDB::ArraySchema] Error: Cannot set dimensions; Attribute name same as dimension name. 1: [TileDB::ArraySchema] Error: Cannot set types; Types not provided. 1: [TileDB::ArraySchema] Error: Cannot set types; Invalid type. 1: [TileDB::ArraySchema] Error: Cannot set domain; Domain not provided. 1: [TileDB::ArraySchema] Error: Cannot set tile order; Invalid tile order. 1: Array Schema Version: 1: 2 1: Array workspace: 1: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 1: Array name: 1: 1: Dimension names: 1: dim1 1: dim2 1: Attribute names: 1: test_attr 1: test_attr1 1: Domain: 1: dim1: [0,99] 1: dim2: [0,99] 1: Types: 1: test_attr: int32[1] 1: test_attr1: int32[var] 1: Coordinates: int32 1: Cell sizes (in bytes): 1: test_attr: 4 1: test_attr1: var 1: Coordinates: 8 1: Dense: 1: false 1: Tile types: 1: irregular 1: Tile order: 1: - 1: Cell order: 1: column-major 1: Capacity: 1: 10000 1: Tile extents: 1: - 1: Compression for test_attr 1: Type = GZIP 1: Level= -1 1: Compression for test_attr1 1: Type = GZIP 1: Level= -1 1: Compression for offsets of test_attr1 1: Type = GZIP + DELTA_ENCODE 1: Level= -1 1: Compression for Coordinates: 1: Type = GZIP 1: Array Schema Version: 1: 2 1: Array name: 1: this_array 1: Dimension names: 1: one_dim 1: Attribute names: 1: this_attribute 1: Domain: 1: one_dim: [1,100] 1: Types: 1: this_attribute: int32[1] 1: Coordinates: int32 1: Cell sizes (in bytes): 1: this_attribute: 4 1: Coordinates: 4 1: Dense: 1: true 1: Tile types: 1: regular 1: Tile order: 1: row-major 1: Cell order: 1: row-major 1: Capacity: 1: - 1: Tile extents: 1: one_dim: 25 1: Compression for this_attribute 1: Type = NONE 1: Level= -1 1: Compression for Coordinates: 1: Type = NONE 1: Array Schema Version: 1: 2 1: Array name: 1: this_array 1: Dimension names: 1: one_dim 1: Attribute names: 1: this_attribute 1: Domain: 1: one_dim: [1,100] 1: Types: 1: this_attribute: int32[1] 1: Coordinates: int32 1: Cell sizes (in bytes): 1: this_attribute: 4 1: Coordinates: 4 1: Dense: 1: true 1: Tile types: 1: regular 1: Tile order: 1: row-major 1: Cell order: 1: row-major 1: Capacity: 1: - 1: Tile extents: 1: one_dim: 25 1: Compression for this_attribute 1: Type = NONE 1: Level= -1 1: Compression for Coordinates: 1: Type = NONE 1: Array Schema Version: 1: 2 1: Array name: 1: this_array_64 1: Dimension names: 1: one_dim_64 1: Attribute names: 1: this_attribute 1: Domain: 1: one_dim_64: [1,1] 1: Types: 1: this_attribute: int64[1] 1: Coordinates: int64 1: Cell sizes (in bytes): 1: this_attribute: 8 1: Coordinates: 8 1: Dense: 1: true 1: Tile types: 1: regular 1: Tile order: 1: row-major 1: Cell order: 1: row-major 1: Capacity: 1: - 1: Tile extents: 1: one_dim_64: 25 1: Compression for this_attribute 1: Type = NONE 1: Level= -1 1: Compression for Coordinates: 1: Type = NONE 1: =============================================================================== 1: All tests passed (43 assertions in 7 test cases) 1: 2: No arguments specified 2: Usage: test_print_array_schema /path/to/TileDBArray 1/21 Test #1: test_array_schema ................ Passed 0.00 sec test 5 Start 5: test_array_iterator 5: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_array_iterator 5: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 5: Test timeout computed to be: 10000000 2/21 Test #2: test_print_array_schema .......... Passed 0.00 sec test 6 Start 6: test_array_schema_api 6: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_array_schema_api 6: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 6: Test timeout computed to be: 10000000 4: =============================================================================== 4: test cases: 1 | 1 passed 4: assertions: - none - 4: 3/21 Test #4: test_sparse_array_benchmark ...... Passed 0.00 sec test 7 Start 7: test_dense_array_api 7: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_dense_array_api 7: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 7: Test timeout computed to be: 10000000 3: No arguments specified 3: Usage: test_print_book_keeping /path/to/TileDBArray/ 4/21 Test #3: test_print_book_keeping .......... Passed 0.01 sec test 8 Start 8: test_sparse_array_api 8: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_sparse_array_api 8: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 8: Test timeout computed to be: 10000000 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestP7SjSo/array_iterator_test_ws/test_sparse_array_it_full/.__74c1362a-f455-4fab-b391-2325299fade84396909303744_1679310016993/ATTR_INT32.tdb. 5: 5: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 5: test_array_iterator is a Catch v2.13.10 host application. 5: Run with -? for options 5: 5: ------------------------------------------------------------------------------- 5: Test sparse array iterator 5: ------------------------------------------------------------------------------- 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:193 5: ............................................................................... 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: 5: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestP7SjSo/array_iterator_test_ws/test_sparse_array_it_full/.__74c1362a-f455-4fab-b391-2325299fade84396909303744_1679310016993/ATTR_INT32.tdb. 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: 5: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 8 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTest0hBa3C/array_iterator_test_ws/test_sparse_array_it_reset/.__a53520fa-fd7b-42de-8562-49c3050f74cd4396909303744_1679310016994/ATTR_INT32.tdb. 5: ------------------------------------------------------------------------------- 5: Test sparse array iterator with reset 5: ------------------------------------------------------------------------------- 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:200 5: ............................................................................... 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: 5: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTest0hBa3C/array_iterator_test_ws/test_sparse_array_it_reset/.__a53520fa-fd7b-42de-8562-49c3050f74cd4396909303744_1679310016994/ATTR_INT32.tdb. 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: 5: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 8 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 8 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestItEYkL/array_iterator_test_ws/test_sparse_array_it_reset_subarray/.__d1350f75-be86-461d-8b4a-567b7f4007c54396909303744_1679310016995/ATTR_INT32.tdb. 5: ------------------------------------------------------------------------------- 5: Test sparse array iterator with reset subarray 5: ------------------------------------------------------------------------------- 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:210 5: ............................................................................... 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: 5: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestItEYkL/array_iterator_test_ws/test_sparse_array_it_reset_subarray/.__d1350f75-be86-461d-8b4a-567b7f4007c54396909303744_1679310016995/ATTR_INT32.tdb. 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: 5: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 8 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 5 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestKONJgm/array_iterator_test_ws/test_sparse_array_it_filter/.__2bc90aff-4f05-4765-b170-a263c6b5ab764396909303744_1679310016995/ATTR_INT32.tdb. 5: ------------------------------------------------------------------------------- 5: Test sparse array iterator with filter 5: ------------------------------------------------------------------------------- 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:220 5: ............................................................................... 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: 5: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestKONJgm/array_iterator_test_ws/test_sparse_array_it_filter/.__2bc90aff-4f05-4765-b170-a263c6b5ab764396909303744_1679310016995/ATTR_INT32.tdb. 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: 5: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 4 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestTtID1P/array_iterator_test_ws/test_sparse_array_it_filter_reset/.__115bff4d-ec94-4374-98aa-37892724ba564396909303744_1679310016997/ATTR_INT32.tdb. 5: ------------------------------------------------------------------------------- 5: Test sparse array iterator with filter with subarray 5: ------------------------------------------------------------------------------- 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:227 5: ............................................................................... 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: 5: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestTtID1P/array_iterator_test_ws/test_sparse_array_it_filter_reset/.__115bff4d-ec94-4374-98aa-37892724ba564396909303744_1679310016997/ATTR_INT32.tdb. 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: 5: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 4 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 1 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestgXBAco/array_iterator_test_ws/test_sparse_array_it_filter_with_empty_value/.__3f890bdb-c3cf-4ed3-b81d-e1a467c446054396909303744_1679310016997/ATTR_INT32.tdb. 5: ------------------------------------------------------------------------------- 5: Test sparse array iterator with filteri with empty value 5: ------------------------------------------------------------------------------- 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:237 5: ............................................................................... 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: 5: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestgXBAco/array_iterator_test_ws/test_sparse_array_it_filter_with_empty_value/.__3f890bdb-c3cf-4ed3-b81d-e1a467c446054396909303744_1679310016997/ATTR_INT32.tdb. 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: 5: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestgXBAco/array_iterator_test_ws/test_sparse_array_it_filter_with_empty_value/.__38494107-04fa-41dc-b36d-2be9ed2604134396909303744_1679310016998/ATTR_INT32.tdb. 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:125: FAILED: 5: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 5: [TileDB::Codec] Error: Could not compress with GZIP. 5: [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestgXBAco/array_iterator_test_ws/test_sparse_array_it_filter_with_empty_value/.__38494107-04fa-41dc-b36d-2be9ed2604134396909303744_1679310016998/ATTR_INT32.tdb. 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:126: FAILED: 5: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) 5: with expansion: 5: -1 == 0 5: 5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: 5: CHECK( i == nval ) 5: with expansion: 5: 0 == 4 5: 5: =============================================================================== 5: test cases: 6 | 0 passed | 6 failed 5: assertions: 81 | 58 passed | 23 failed 5: 5/21 Test #5: test_array_iterator ..............***Failed 0.01 sec [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestP7SjSo/array_iterator_test_ws/test_sparse_array_it_full/.__74c1362a-f455-4fab-b391-2325299fade84396909303744_1679310016993/ATTR_INT32.tdb. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test_array_iterator is a Catch v2.13.10 host application. Run with -? for options ------------------------------------------------------------------------------- Test sparse array iterator ------------------------------------------------------------------------------- ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:193 ............................................................................... ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) with expansion: -1 == 0 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestP7SjSo/array_iterator_test_ws/test_sparse_array_it_full/.__74c1362a-f455-4fab-b391-2325299fade84396909303744_1679310016993/ATTR_INT32.tdb. ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) with expansion: -1 == 0 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 8 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTest0hBa3C/array_iterator_test_ws/test_sparse_array_it_reset/.__a53520fa-fd7b-42de-8562-49c3050f74cd4396909303744_1679310016994/ATTR_INT32.tdb. ------------------------------------------------------------------------------- Test sparse array iterator with reset ------------------------------------------------------------------------------- ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:200 ............................................................................... ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) with expansion: -1 == 0 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTest0hBa3C/array_iterator_test_ws/test_sparse_array_it_reset/.__a53520fa-fd7b-42de-8562-49c3050f74cd4396909303744_1679310016994/ATTR_INT32.tdb. ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) with expansion: -1 == 0 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 8 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 8 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestItEYkL/array_iterator_test_ws/test_sparse_array_it_reset_subarray/.__d1350f75-be86-461d-8b4a-567b7f4007c54396909303744_1679310016995/ATTR_INT32.tdb. ------------------------------------------------------------------------------- Test sparse array iterator with reset subarray ------------------------------------------------------------------------------- ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:210 ............................................................................... ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) with expansion: -1 == 0 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestItEYkL/array_iterator_test_ws/test_sparse_array_it_reset_subarray/.__d1350f75-be86-461d-8b4a-567b7f4007c54396909303744_1679310016995/ATTR_INT32.tdb. ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) with expansion: -1 == 0 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 8 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 5 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestKONJgm/array_iterator_test_ws/test_sparse_array_it_filter/.__2bc90aff-4f05-4765-b170-a263c6b5ab764396909303744_1679310016995/ATTR_INT32.tdb. ------------------------------------------------------------------------------- Test sparse array iterator with filter ------------------------------------------------------------------------------- ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:220 ............................................................................... ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) with expansion: -1 == 0 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestKONJgm/array_iterator_test_ws/test_sparse_array_it_filter/.__2bc90aff-4f05-4765-b170-a263c6b5ab764396909303744_1679310016995/ATTR_INT32.tdb. ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) with expansion: -1 == 0 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 4 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestTtID1P/array_iterator_test_ws/test_sparse_array_it_filter_reset/.__115bff4d-ec94-4374-98aa-37892724ba564396909303744_1679310016997/ATTR_INT32.tdb. ------------------------------------------------------------------------------- Test sparse array iterator with filter with subarray ------------------------------------------------------------------------------- ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:227 ............................................................................... ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) with expansion: -1 == 0 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestTtID1P/array_iterator_test_ws/test_sparse_array_it_filter_reset/.__115bff4d-ec94-4374-98aa-37892724ba564396909303744_1679310016997/ATTR_INT32.tdb. ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) with expansion: -1 == 0 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 4 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 1 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestgXBAco/array_iterator_test_ws/test_sparse_array_it_filter_with_empty_value/.__3f890bdb-c3cf-4ed3-b81d-e1a467c446054396909303744_1679310016997/ATTR_INT32.tdb. ------------------------------------------------------------------------------- Test sparse array iterator with filteri with empty value ------------------------------------------------------------------------------- ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:237 ............................................................................... ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:106: FAILED: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) with expansion: -1 == 0 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestgXBAco/array_iterator_test_ws/test_sparse_array_it_filter_with_empty_value/.__3f890bdb-c3cf-4ed3-b81d-e1a467c446054396909303744_1679310016997/ATTR_INT32.tdb. ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:107: FAILED: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) with expansion: -1 == 0 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestgXBAco/array_iterator_test_ws/test_sparse_array_it_filter_with_empty_value/.__38494107-04fa-41dc-b36d-2be9ed2604134396909303744_1679310016998/ATTR_INT32.tdb. ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:125: FAILED: CHECK( tiledb_array_write(tiledb_array, buffers, buffer_sizes) == 0 ) with expansion: -1 == 0 [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /tmp/TileDBTestgXBAco/array_iterator_test_ws/test_sparse_array_it_filter_with_empty_value/.__38494107-04fa-41dc-b36d-2be9ed2604134396909303744_1679310016998/ATTR_INT32.tdb. ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:126: FAILED: CHECK( tiledb_array_finalize(tiledb_array) == 0 ) with expansion: -1 == 0 ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:184: FAILED: CHECK( i == nval ) with expansion: 0 == 4 =============================================================================== test cases: 6 | 0 passed | 6 failed assertions: 81 | 58 passed | 23 failed test 9 Start 9: test_tiledb_utils 9: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_tiledb_utils 9: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 9: Test timeout computed to be: 10000000 9: [TileDB::utils] Error: (set_working_dir) Failed to set_working_dir as /tmp/TileDBTestlzzaLh/WORKSPACE.non-existent does not exist 9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTesti6CiFc/WORKSPACE errno=2(No such file or directory) 9: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=/tmp/TileDBTesti6CiFc/WORKSPACE errno=2(No such file or directory) 9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTestGjtzx5/WORKSPACE errno=2(No such file or directory) 9: 7e820c3ee657b1a27a56a7be9d202a7a7e820c3ee657b1a27a56a7be9d202a7a[TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestK06uEU/test_file 9: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestK06uEU/test_file 6: test_array_schema_api: ./genomicsdb-tiledb/core/src/array/array_schema.cc:1082: int ArraySchema::deserialize(const void*, size_t): Assertion `offset + array_name_size < buffer_size' failed. 6: 6: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 6: test_array_schema_api is a Catch v2.13.10 host application. 6: Run with -? for options 6: 6: ------------------------------------------------------------------------------- 6: Test array schema backward compatibility 6: ------------------------------------------------------------------------------- 6: ./genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc:328 6: ............................................................................... 6: 6: ./genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc:328: FAILED: 6: {Unknown expression after the reported line} 6: due to a fatal error condition: 6: SIGABRT - Abort (abnormal termination) signal 6: 6: =============================================================================== 6: test cases: 12 | 11 passed | 1 failed 6: assertions: 311 | 310 passed | 1 failed 6: 9: =============================================================================== 9: All tests passed (10488234 assertions in 9 test cases) 9: 6/21 Test #9: test_tiledb_utils ................ Passed 0.39 sec test 10 Start 10: test_codec 10: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_codec 10: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 10: Test timeout computed to be: 10000000 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR 10: [TileDB::Codec] Error: Could not decompress with GZIP. 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR 10: [TileDB::Codec] Error: Could not decompress with GZIP. 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_DATA_ERROR 10: [TileDB::Codec] Error: Could not decompress with GZIP. 10: [TileDB::Codec] Error: Codec for compression type=15 has already been registered. 10: =============================================================================== 10: All tests passed (31 assertions in 5 test cases) 10: 7/21 Test #10: test_codec ....................... Passed 0.00 sec test 11 Start 11: test_codec_filter 11: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_codec_filter 11: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 11: Test timeout computed to be: 10000000 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type. 11: =============================================================================== 11: All tests passed (192 assertions in 2 test cases) 11: 8/21 Test #11: test_codec_filter ................ Passed 0.01 sec test 12 Start 12: test_expressions 12: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_expressions 12: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 12: Test timeout computed to be: 10000000 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (Expression) Attribute a2 in expression filter not present in the array schema 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Undefined token "a2" found at position 0. 12: [TileDB::Expression] Error: (Expression) Expression parsing for dense arrays not yet implemented 12: =============================================================================== 12: All tests passed (3009 assertions in 80 test cases) 12: 9/21 Test #12: test_expressions ................. Passed 0.03 sec test 13 Start 13: test_mem_utils 13: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_mem_utils 13: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 13: Test timeout computed to be: 10000000 13: Mon Mar 20 11:00:17 2023 Memory stats Tracking memory usage START size=6MB resident=3MB share=2MB text=424KB lib=0 data=536KB dt=0 10/21 Test #6: test_array_schema_api ............Subprocess aborted***Exception: 0.47 sec test_array_schema_api: ./genomicsdb-tiledb/core/src/array/array_schema.cc:1082: int ArraySchema::deserialize(const void*, size_t): Assertion `offset + array_name_size < buffer_size' failed. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test_array_schema_api is a Catch v2.13.10 host application. Run with -? for options ------------------------------------------------------------------------------- Test array schema backward compatibility ------------------------------------------------------------------------------- ./genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc:328 ............................................................................... ./genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc:328: FAILED: {Unknown expression after the reported line} due to a fatal error condition: SIGABRT - Abort (abnormal termination) signal =============================================================================== test cases: 12 | 11 passed | 1 failed assertions: 311 | 310 passed | 1 failed test 14 Start 14: test_uri 14: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_uri 14: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 14: Test timeout computed to be: 10000000 14: =============================================================================== 14: All tests passed (58 assertions in 1 test case) 14: 11/21 Test #14: test_uri ......................... Passed 0.00 sec test 15 Start 15: test_utils 15: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_utils 15: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 15: Test timeout computed to be: 10000000 15: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; invalid input buffer format 15: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; output buffer overflow 15: [TileDB::utils] Error: (RLE_compress_coords_row) Failed compressing coordinates with RLE; invalid buffer format 15: [TileDB::utils] Error: (RLE_compress_coords_row) Filed compressing coordinates with RLE; output buffer overflow 15: [TileDB::utils] Error: (RLE_compress_coords_col) Failed compressing coordinates with RLE; invalid buffer format 15: [TileDB::utils] Error: (RLE_compress_coords_col) Failed compressing coordinates with RLE; output buffer overflow 15: [TileDB::FileSystem] Error: (create_dir) Cannot create directory path=/non-existent-dir/dir errno=2(No such file or directory) 15: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/non-existent-dir/file errno=2(No such file or directory) 15: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-dir/file errno=2(No such file or directory) 15: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=/non-existent-dir/file errno=2(No such file or directory) 15: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/non-existent-dir/file errno=2(No such file or directory) 15: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=/non-existent-dir/dir errno=2(No such file or directory) 15: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=/non-existent-dir/old errno=2(No such file or directory) 15: =============================================================================== 15: All tests passed (86 assertions in 6 test cases) 15: 12/21 Test #15: test_utils ....................... Passed 0.17 sec test 16 Start 16: test_posixfs 16: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_posixfs 16: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 16: Test timeout computed to be: 10000000 16: [TileDB::FileSystem] Error: (create_dir) Cannot create directory; Directory already exists path=/tmp/TileDBTestx8n104/test_posixfs_dirdir 16: [TileDB::FileSystem] Error: (create_dir) Cannot create directory path=/non-existent-dir/foo errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestx8n104/test_posixfs_dirdir errno=21(Is a directory) 16: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestx8n104/test_posixfs_dirdir errno=21(Is a directory) 16: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-dir errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=non-existent-dir errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=non-existent-dir errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=non-existent-dir errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/tmp/TileDBTestWya00v/test_posixfs_dirfile/foo1 errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestQOpGV3/test_posixfs_dirread_write/foo 16: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestQOpGV3/test_posixfs_dirread_write/foo 16: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestQOpGV3/test_posixfs_dirread_write/foo 16: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (read_from_file) Cannot open simultaneously for reads/writes path=test_posixfs_dir_locking/foo 16: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_sync 16: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_no_close 16: =============================================================================== 16: All tests passed (258 assertions in 11 test cases) 16: 13/21 Test #16: test_posixfs ..................... Passed 0.03 sec test 17 Start 17: test_storage_buffer 17: Test command: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test/test_storage_buffer 17: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/test 17: Test timeout computed to be: 10000000 17: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestfnpG6L/test-file 17: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/tmp/TileDBTestfnpG6L/test-file-non-existent errno=2(No such file or directory) 17: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestfnpG6L/test-file 17: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestfnpG6L/test-file 17: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-file errno=13(Permission denied) 17: [TileDB::StorageBuffer] Error: (write_buffer) Cannot write bytes path=/non-existent-file errno=13(Permission denied) 17: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=13(Permission denied) 17: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-file errno=13(Permission denied) 17: [TileDB::StorageBuffer] Error: (gzip_write_buffer) Cannot write bytes path=/non-existent-file errno=13(Permission denied) 17: [TileDB::StorageBuffer] Error: (write_buffer) Cannot compress and/or write bytes path=/non-existent-file errno=13(Permission denied) 17: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=13(Permission denied) 17: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/non-existent-file errno=2(No such file or directory) 17: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/non-existent-file errno=2(No such file or directory) 17: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/non-existent-file errno=2(No such file or directory) 17: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/non-existent-file errno=2(No such file or directory) 17: [TileDB::StorageBuffer] Error: (write_buffer) Compression type=1000 not supported in StorageBuffer 17: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=2(No such file or directory) 17: [TileDB::StorageBuffer] Error: (read_buffer) Compression type=1000 for read_buffer not supported for CompressedStorageBuffer 17: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestfou2Tg/compressed_foo 17: +++ we are here 2 13: Mon Mar 20 11:00:18 2023 Memory stats Tracking memory usage END size=6MB resident=3MB share=2MB text=424KB lib=0 data=536KB dt=0 13: =============================================================================== 13: test cases: 1 | 1 passed 13: assertions: - none - 13: 14/21 Test #13: test_mem_utils ................... Passed 1.00 sec test 18 Start 18: ci_tests 18: Test command: /<>/genomicsdb-tiledb/examples/run_examples.sh 18: Working Directory: /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples 18: Test timeout computed to be: 10000000 18: Example 1: Running ./tiledb_workspace_group_create... 18: Example 1: Done running ./tiledb_workspace_group_create 18: Example 2: Running ./tiledb_ls_workspaces... 18: my_workspace 18: Example 2: Done running ./tiledb_ls_workspaces 18: Example 3: Running ./tiledb_array_create_dense... 18: Example 3: Done running ./tiledb_array_create_dense 18: Example 4: Running ./tiledb_array_create_sparse... 18: Example 4: Done running ./tiledb_array_create_sparse 18: Example 5: Running ./tiledb_array_primitive... 18: Array name: my_workspace/dense_arrays/my_array_A 18: Attributes: a1 a2 a3 18: The array is dense 18: Array name: my_workspace/sparse_arrays/my_array_B 18: Attributes: a1 a2 a3 18: The array is sparse 18: Example 5: Done running ./tiledb_array_primitive 18: Example 6: Running ./tiledb_array_write_dense_1... 18: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR 18: [TileDB::Codec] Error: Could not compress with GZIP. 18: [TileDB::WriteState] Error: Cannot compress tile for /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/my_workspace/dense_arrays/my_array_A/.__67d554de-2f53-4bf8-ad8b-8d9c33c5116e4396830660544_1679310018475/a1.tdb. 18: [TileDB::WriteState] Error: Cannot compress tile for /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/my_workspace/dense_arrays/my_array_A/.__67d554de-2f53-4bf8-ad8b-8d9c33c5116e4396830660544_1679310018475/a1.tdb[Examples::./genomicsdb-tiledb/examples/src/tiledb_array_write_dense_1.cc] Runtime Error. 18: 18: Exit Status=255. Quitting execution of run_examples.sh 15/21 Test #18: ci_tests .........................***Failed 0.04 sec Example 1: Running ./tiledb_workspace_group_create... Example 1: Done running ./tiledb_workspace_group_create Example 2: Running ./tiledb_ls_workspaces... my_workspace Example 2: Done running ./tiledb_ls_workspaces Example 3: Running ./tiledb_array_create_dense... Example 3: Done running ./tiledb_array_create_dense Example 4: Running ./tiledb_array_create_sparse... Example 4: Done running ./tiledb_array_create_sparse Example 5: Running ./tiledb_array_primitive... Array name: my_workspace/dense_arrays/my_array_A Attributes: a1 a2 a3 The array is dense Array name: my_workspace/sparse_arrays/my_array_B Attributes: a1 a2 a3 The array is sparse Example 5: Done running ./tiledb_array_primitive Example 6: Running ./tiledb_array_write_dense_1... [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR [TileDB::Codec] Error: Could not compress with GZIP. [TileDB::WriteState] Error: Cannot compress tile for /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/my_workspace/dense_arrays/my_array_A/.__67d554de-2f53-4bf8-ad8b-8d9c33c5116e4396830660544_1679310018475/a1.tdb. [TileDB::WriteState] Error: Cannot compress tile for /<>/obj-s390x-linux-gnu/genomicsdb-tiledb/examples/my_workspace/dense_arrays/my_array_A/.__67d554de-2f53-4bf8-ad8b-8d9c33c5116e4396830660544_1679310018475/a1.tdb[Examples::./genomicsdb-tiledb/examples/src/tiledb_array_write_dense_1.cc] Runtime Error. Exit Status=255. Quitting execution of run_examples.sh test 19 Start 19: ctests 19: Test command: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests "-d" "yes" 19: Working Directory: /<>/obj-s390x-linux-gnu/src/test/cpp 19: Test timeout computed to be: 10000000 19: 19: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 19: ctests is a Catch v2.13.10 host application. 19: Run with -? for options 19: 19: ------------------------------------------------------------------------------- 19: test bgen 19: ------------------------------------------------------------------------------- 19: ./src/test/cpp/src/test_bgen.cc:11 19: ............................................................................... 19: 19: ./src/test/cpp/src/test_bgen.cc:11: FAILED: 19: due to unexpected exception with message: 19: basic_string::_M_replace_aux 19: 19: 0.000 s: test bgen 19: 0.000 s: gt_remapper 19: 0.000 s: alleles_combiner 19: [TileDB] Error: No TileDB support for URL=dfdfd://ddd. 19: 11:00:18.561 ERROR NativeGenomicsDB - pid=25013 tid=25013 htslib_plugin could not open file dfdfd://ddd No TileDB support for URL=dfdfd://ddd 19: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) 19: 11:00:18.561 ERROR NativeGenomicsDB - pid=25013 tid=25013 hts_plugin read /dfdfd/dfdfd/non-existent-file error [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) 19: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) 19: 11:00:18.561 ERROR NativeGenomicsDB - pid=25013 tid=25013 hts_plugin read non-existent-file error [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) 19: ------------------------------------------------------------------------------- 19: test htslib plugin 19: ------------------------------------------------------------------------------- 19: ./src/test/cpp/src/test_htslib_plugin.cc:40 19: ............................................................................... 19: 19: ./src/test/cpp/src/test_htslib_plugin.cc:66: FAILED: 19: CHECK( strcmp(buffer, " World") == 0 ) 19: with expansion: 19: 1 == 0 19: 19: 0.001 s: test htslib plugin 19: ------------------------------------------------------------------------------- 19: gvcf iterator 19: ------------------------------------------------------------------------------- 19: ./src/test/cpp/src/test_columnar_gvcf_iterator.cc:53 19: ............................................................................... 19: 19: ./src/test/cpp/src/test_columnar_gvcf_iterator.cc:53: FAILED: 19: {Unknown expression after the reported line} 19: due to unexpected exception with message: 19: basic_string::_M_replace_aux 19: 19: 0.000 s: gvcf iterator 19: ------------------------------------------------------------------------------- 19: columnar_gvcf_iterator_test 19: ------------------------------------------------------------------------------- 19: ./src/test/cpp/src/test_columnar_gvcf_iterator.cc:349 19: ............................................................................... 19: 19: ./src/test/cpp/src/test_columnar_gvcf_iterator.cc:349: FAILED: 19: due to unexpected exception with message: 19: basic_string::_M_replace_aux 19: 19: 0.000 s: columnar_gvcf_iterator_test 19: 11:00:18.562 INFO NativeGenomicsDB - pid=25013 tid=25013 This is a test 19: 11:00:18.562 WARN NativeGenomicsDB - pid=25013 tid=25013 This is a test 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 This is a test 19: 11:00:18.562 DEBUG NativeGenomicsDB - pid=25013 tid=25013 This is a test 19: This is a test 19: This is a test 19: This is a test 19: This is a test 19: This is a once_only test 19: Trying format Hello1 Hello2 19: 0.000 s: test logger 19: 11:00:18.562 INFO NativeGenomicsDB - pid=25013 tid=25013 i=1 str=This is a test 19: 11:00:18.562 WARN NativeGenomicsDB - pid=25013 tid=25013 i=2 str=This is a test 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 i=3 str=This is a test 19: 11:00:18.562 DEBUG NativeGenomicsDB - pid=25013 tid=25013 i=4 str=This is a test 19: 11:00:18.562 INFO NativeGenomicsDB - pid=25013 tid=25013 i=6 str=This is a once_only test 19: 11:00:18.562 WARN NativeGenomicsDB - pid=25013 tid=25013 i=7 str=This is a once_only test 19: 0.000 s: test logger format 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 i=1 str=This is a test 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Test Exception 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Test Exception 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Test Exception 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Native Stack Trace: 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x1afef2) [0x2aa3572fef2] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0xb2944) [0x2aa35632944] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x4c554) [0x2aa355cc554] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x56060) [0x2aa355d6060] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(main+0x3526) [0x2aa355b47a6] 19: /lib/s390x-linux-gnu/libc.so.6(+0x2a188) [0x3ffb112a188] 19: /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xa0) [0x3ffb112a270] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x3d120) [0x2aa355bd120] 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Test Exception 19: 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Native Stack Trace: 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x1afef2) [0x2aa3572fef2] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0xb2956) [0x2aa35632956] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x4c554) [0x2aa355cc554] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x56060) [0x2aa355d6060] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(main+0x3526) [0x2aa355b47a6] 19: /lib/s390x-linux-gnu/libc.so.6(+0x2a188) [0x3ffb112a188] 19: /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xa0) [0x3ffb112a270] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x3d120) [0x2aa355bd120] 19: 0.000 s: test logger exceptions 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x1afef2) [0x2aa3572fef2] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0xbe2d4) [0x2aa3563e2d4] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x4c554) [0x2aa355cc554] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x56060) [0x2aa355d6060] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(main+0x3526) [0x2aa355b47a6] 19: /lib/s390x-linux-gnu/libc.so.6(+0x2a188) [0x3ffb112a188] 19: /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xa0) [0x3ffb112a270] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x3d120) [0x2aa355bd120] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x1afef2) [0x2aa3572fef2] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0xbe2ac) [0x2aa3563e2ac] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x4c554) [0x2aa355cc554] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x56060) [0x2aa355d6060] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(main+0x3526) [0x2aa355b47a6] 19: /lib/s390x-linux-gnu/libc.so.6(+0x2a188) [0x3ffb112a188] 19: /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xa0) [0x3ffb112a270] 19: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x3d120) [0x2aa355bd120] 19: This is a test 19: 0.000 s: test explicit logger 19: ------------------------------------------------------------------------------- 19: pb_query_config_test 19: ------------------------------------------------------------------------------- 19: ./src/test/cpp/src/test_pb.cc:121 19: ............................................................................... 19: 19: ./src/test/cpp/src/test_pb.cc:121: FAILED: 19: due to unexpected exception with message: 19: GenomicsDBConfigException : m_vid_mapper.is_initialized() && m_vid_mapper. 19: is_callset_mapping_initialized() 19: 19: 0.000 s: pb_query_config_test 19: 0.001 s: pb_vid_mapping_test 19: 0.000 s: multid_vector 2D_test 19: 0.000 s: multid_vector 3D_test 19: 0.000 s: multid_vector 2D_test_with_missing_values 19: 0.000 s: multid_vector 2D_float_test 19: 0.000 s: multid_vector 2D_tuple_test 19: 0.000 s: genotype_ordering haploid_5_alleles 19: 0.000 s: genotype_ordering diploid_2_alleles 19: 0.000 s: genotype_ordering diploid_3_alleles 19: 0.000 s: genotype_ordering diploid_4_alleles 19: 0.000 s: genotype_ordering triploid_2_alleles 19: 0.000 s: genotype_ordering triploid_3_alleles 19: 0.000 s: genotype_ordering triploid_4_alleles 19: 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles 19: 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles_without_NON_REF 19: 0.000 s: Check loader configuration with json file 19: 0.000 s: Check configuration with json file 19: 0.000 s: Check configuration with json file and shared posifs optim 19: 0.000 s: Compare configuration with json file and string 19: =============================================================================== 19: test cases: 30 | 25 passed | 5 failed 19: assertions: 1127 | 1122 passed | 5 failed 19: 19: 11:00:18.565 DEBUG NativeGenomicsDB - pid=25013 tid=25013 Deleting htslib_fs_adapter tiledb_ctx_map 16/21 Test #19: ctests ...........................***Failed 0.10 sec ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ctests is a Catch v2.13.10 host application. Run with -? for options ------------------------------------------------------------------------------- test bgen ------------------------------------------------------------------------------- ./src/test/cpp/src/test_bgen.cc:11 ............................................................................... ./src/test/cpp/src/test_bgen.cc:11: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: test bgen 0.000 s: gt_remapper 0.000 s: alleles_combiner [TileDB] Error: No TileDB support for URL=dfdfd://ddd. 11:00:18.561 ERROR NativeGenomicsDB - pid=25013 tid=25013 htslib_plugin could not open file dfdfd://ddd No TileDB support for URL=dfdfd://ddd [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) 11:00:18.561 ERROR NativeGenomicsDB - pid=25013 tid=25013 hts_plugin read /dfdfd/dfdfd/non-existent-file error [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) 11:00:18.561 ERROR NativeGenomicsDB - pid=25013 tid=25013 hts_plugin read non-existent-file error [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) ------------------------------------------------------------------------------- test htslib plugin ------------------------------------------------------------------------------- ./src/test/cpp/src/test_htslib_plugin.cc:40 ............................................................................... ./src/test/cpp/src/test_htslib_plugin.cc:66: FAILED: CHECK( strcmp(buffer, " World") == 0 ) with expansion: 1 == 0 0.001 s: test htslib plugin ------------------------------------------------------------------------------- gvcf iterator ------------------------------------------------------------------------------- ./src/test/cpp/src/test_columnar_gvcf_iterator.cc:53 ............................................................................... ./src/test/cpp/src/test_columnar_gvcf_iterator.cc:53: FAILED: {Unknown expression after the reported line} due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: gvcf iterator ------------------------------------------------------------------------------- columnar_gvcf_iterator_test ------------------------------------------------------------------------------- ./src/test/cpp/src/test_columnar_gvcf_iterator.cc:349 ............................................................................... ./src/test/cpp/src/test_columnar_gvcf_iterator.cc:349: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: columnar_gvcf_iterator_test 11:00:18.562 INFO NativeGenomicsDB - pid=25013 tid=25013 This is a test 11:00:18.562 WARN NativeGenomicsDB - pid=25013 tid=25013 This is a test 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 This is a test 11:00:18.562 DEBUG NativeGenomicsDB - pid=25013 tid=25013 This is a test This is a test This is a test This is a test This is a test This is a once_only test Trying format Hello1 Hello2 0.000 s: test logger 11:00:18.562 INFO NativeGenomicsDB - pid=25013 tid=25013 i=1 str=This is a test 11:00:18.562 WARN NativeGenomicsDB - pid=25013 tid=25013 i=2 str=This is a test 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 i=3 str=This is a test 11:00:18.562 DEBUG NativeGenomicsDB - pid=25013 tid=25013 i=4 str=This is a test 11:00:18.562 INFO NativeGenomicsDB - pid=25013 tid=25013 i=6 str=This is a once_only test 11:00:18.562 WARN NativeGenomicsDB - pid=25013 tid=25013 i=7 str=This is a once_only test 0.000 s: test logger format 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 i=1 str=This is a test 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Test Exception 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Test Exception 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Test Exception 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Native Stack Trace: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x1afef2) [0x2aa3572fef2] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0xb2944) [0x2aa35632944] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x4c554) [0x2aa355cc554] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x56060) [0x2aa355d6060] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(main+0x3526) [0x2aa355b47a6] /lib/s390x-linux-gnu/libc.so.6(+0x2a188) [0x3ffb112a188] /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xa0) [0x3ffb112a270] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x3d120) [0x2aa355bd120] 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Test Exception 11:00:18.562 ERROR NativeGenomicsDB - pid=25013 tid=25013 Native Stack Trace: /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x1afef2) [0x2aa3572fef2] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0xb2956) [0x2aa35632956] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x4c554) [0x2aa355cc554] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x56060) [0x2aa355d6060] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(main+0x3526) [0x2aa355b47a6] /lib/s390x-linux-gnu/libc.so.6(+0x2a188) [0x3ffb112a188] /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xa0) [0x3ffb112a270] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x3d120) [0x2aa355bd120] 0.000 s: test logger exceptions /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x1afef2) [0x2aa3572fef2] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0xbe2d4) [0x2aa3563e2d4] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x4c554) [0x2aa355cc554] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x56060) [0x2aa355d6060] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(main+0x3526) [0x2aa355b47a6] /lib/s390x-linux-gnu/libc.so.6(+0x2a188) [0x3ffb112a188] /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xa0) [0x3ffb112a270] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x3d120) [0x2aa355bd120] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x1afef2) [0x2aa3572fef2] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0xbe2ac) [0x2aa3563e2ac] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x4c554) [0x2aa355cc554] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x56060) [0x2aa355d6060] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(main+0x3526) [0x2aa355b47a6] /lib/s390x-linux-gnu/libc.so.6(+0x2a188) [0x3ffb112a188] /lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0xa0) [0x3ffb112a270] /<>/obj-s390x-linux-gnu/src/test/cpp/ctests(+0x3d120) [0x2aa355bd120] This is a test 0.000 s: test explicit logger ------------------------------------------------------------------------------- pb_query_config_test ------------------------------------------------------------------------------- ./src/test/cpp/src/test_pb.cc:121 ............................................................................... ./src/test/cpp/src/test_pb.cc:121: FAILED: due to unexpected exception with message: GenomicsDBConfigException : m_vid_mapper.is_initialized() && m_vid_mapper. is_callset_mapping_initialized() 0.000 s: pb_query_config_test 0.001 s: pb_vid_mapping_test 0.000 s: multid_vector 2D_test 0.000 s: multid_vector 3D_test 0.000 s: multid_vector 2D_test_with_missing_values 0.000 s: multid_vector 2D_float_test 0.000 s: multid_vector 2D_tuple_test 0.000 s: genotype_ordering haploid_5_alleles 0.000 s: genotype_ordering diploid_2_alleles 0.000 s: genotype_ordering diploid_3_alleles 0.000 s: genotype_ordering diploid_4_alleles 0.000 s: genotype_ordering triploid_2_alleles 0.000 s: genotype_ordering triploid_3_alleles 0.000 s: genotype_ordering triploid_4_alleles 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles_without_NON_REF 0.000 s: Check loader configuration with json file 0.000 s: Check configuration with json file 0.000 s: Check configuration with json file and shared posifs optim 0.000 s: Compare configuration with json file and string =============================================================================== test cases: 30 | 25 passed | 5 failed assertions: 1127 | 1122 passed | 5 failed 11:00:18.565 DEBUG NativeGenomicsDB - pid=25013 tid=25013 Deleting htslib_fs_adapter tiledb_ctx_map test 20 Start 20: api_tests 20: Test command: /<>/obj-s390x-linux-gnu/src/test/cpp/api_tests "-d" "yes" 20: Working Directory: /<>/obj-s390x-linux-gnu/src/test/cpp 20: Test timeout computed to be: 10000000 20: 0.000 s: api get_version 20: 0.000 s: api empty_args 20: 20: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 20: api_tests is a Catch v2.13.10 host application. 20: Run with -? for options 20: 20: ------------------------------------------------------------------------------- 20: api query_variants direct DP 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:134 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:134: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variants direct DP 20: ------------------------------------------------------------------------------- 20: api query_variants direct DP with huge row range 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:142 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:142: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variants direct DP with huge row range 20: ------------------------------------------------------------------------------- 20: api query_variants direct DP with huge disjoint row ranges 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:148 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:148: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variants direct DP with huge disjoint row ranges 20: ------------------------------------------------------------------------------- 20: api query_variants direct DP with range composed of multiple points 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:154 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:156: FAILED: 20: REQUIRE( gdb->query_variants(array, {{0,10000000000}}, {{0, 0}, {2,2}}).size() == 2 ) 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variants direct DP with range composed of multiple points 20: ------------------------------------------------------------------------------- 20: api query_variants direct DP with range composed of overlapping ranges 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:161 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:163: FAILED: 20: REQUIRE( gdb->query_variants(array, {{0,10000000000}}, {{1000,2000}, {1, 5}, {2,2}}).size() == 3 ) 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variants direct DP with range composed of overlapping ranges 20: 0.000 s: api query_variants direct DP with invalid row range 20: ------------------------------------------------------------------------------- 20: api query_variants direct DP and GT 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:174 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:174: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variants direct DP and GT 20: ------------------------------------------------------------------------------- 20: api query_variants direct DP and GT with PP 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:182 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:182: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variants direct DP and GT with PP 20: ------------------------------------------------------------------------------- 20: api query_variants with json 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:190 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:190: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variants with json 20: ------------------------------------------------------------------------------- 20: api query variants with json string 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:202 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:202: FAILED: 20: {Unknown expression after the reported line} 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query variants with json string 20: ------------------------------------------------------------------------------- 20: api query variants with enabled shared posixfs optimizations 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:225 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:225: FAILED: 20: {Unknown expression after the reported line} 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query variants with enabled shared posixfs optimizations 20: ------------------------------------------------------------------------------- 20: api query_variant_calls direct 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:383 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:383: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variant_calls direct 20: ------------------------------------------------------------------------------- 20: api query_variant_calls direct DP and GT 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:408 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:408: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variant_calls direct DP and GT 20: ------------------------------------------------------------------------------- 20: api query_variant_calls direct DP and GT with PP 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:431 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:431: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variant_calls direct DP and GT with PP 20: ------------------------------------------------------------------------------- 20: api query_variant_calls with json 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:454 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:454: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variant_calls with json 20: ------------------------------------------------------------------------------- 20: api query_variant_calls with protobuf 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:470 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:510: FAILED: 20: {Unknown expression after the reported line} 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api query_variant_calls with protobuf 20: ------------------------------------------------------------------------------- 20: api generate_vcf direct 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:534 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:534: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api generate_vcf direct 20: ------------------------------------------------------------------------------- 20: api generate_vcf with json 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:557 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:557: FAILED: 20: due to unexpected exception with message: 20: basic_string::_M_replace_aux 20: 20: 0.000 s: api generate_vcf with json 20: terminate called after throwing an instance of 'std::length_error' 20: what(): basic_string::_M_replace_aux 20: ------------------------------------------------------------------------------- 20: api generate_vcf with json multiple threads 20: ------------------------------------------------------------------------------- 20: ./src/test/cpp/src/test_genomicsdb_api.cc:570 20: ............................................................................... 20: 20: ./src/test/cpp/src/test_genomicsdb_api.cc:570: FAILED: 20: {Unknown expression after the reported line} 20: due to a fatal error condition: 20: SIGABRT - Abort (abnormal termination) signal 20: 20: 0.000 s: api generate_vcf with json multiple threads 20: =============================================================================== 20: test cases: 21 | 3 passed | 18 failed 20: assertions: 40 | 22 passed | 18 failed 20: 17: =============================================================================== 17: All tests passed (450703 assertions in 3 test cases) 17: 17/21 Test #17: test_storage_buffer .............. Passed 0.94 sec test 21 Start 21: tools_tests 21: Test command: /<>/tests/test_tools.sh "/<>/tests/inputs/vcfs" "/<>/obj-s390x-linux-gnu/tools" 21: Working Directory: /<>/obj-s390x-linux-gnu/tools 21: Test timeout computed to be: 10000000 18/21 Test #20: api_tests ........................Subprocess aborted***Exception: 0.18 sec 0.000 s: api get_version 0.000 s: api empty_args ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ api_tests is a Catch v2.13.10 host application. Run with -? for options ------------------------------------------------------------------------------- api query_variants direct DP ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:134 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:134: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variants direct DP ------------------------------------------------------------------------------- api query_variants direct DP with huge row range ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:142 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:142: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variants direct DP with huge row range ------------------------------------------------------------------------------- api query_variants direct DP with huge disjoint row ranges ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:148 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:148: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variants direct DP with huge disjoint row ranges ------------------------------------------------------------------------------- api query_variants direct DP with range composed of multiple points ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:154 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:156: FAILED: REQUIRE( gdb->query_variants(array, {{0,10000000000}}, {{0, 0}, {2,2}}).size() == 2 ) due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variants direct DP with range composed of multiple points ------------------------------------------------------------------------------- api query_variants direct DP with range composed of overlapping ranges ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:161 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:163: FAILED: REQUIRE( gdb->query_variants(array, {{0,10000000000}}, {{1000,2000}, {1, 5}, {2,2}}).size() == 3 ) due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variants direct DP with range composed of overlapping ranges 0.000 s: api query_variants direct DP with invalid row range ------------------------------------------------------------------------------- api query_variants direct DP and GT ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:174 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:174: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variants direct DP and GT ------------------------------------------------------------------------------- api query_variants direct DP and GT with PP ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:182 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:182: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variants direct DP and GT with PP ------------------------------------------------------------------------------- api query_variants with json ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:190 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:190: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variants with json ------------------------------------------------------------------------------- api query variants with json string ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:202 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:202: FAILED: {Unknown expression after the reported line} due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query variants with json string ------------------------------------------------------------------------------- api query variants with enabled shared posixfs optimizations ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:225 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:225: FAILED: {Unknown expression after the reported line} due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query variants with enabled shared posixfs optimizations ------------------------------------------------------------------------------- api query_variant_calls direct ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:383 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:383: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variant_calls direct ------------------------------------------------------------------------------- api query_variant_calls direct DP and GT ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:408 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:408: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variant_calls direct DP and GT ------------------------------------------------------------------------------- api query_variant_calls direct DP and GT with PP ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:431 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:431: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variant_calls direct DP and GT with PP ------------------------------------------------------------------------------- api query_variant_calls with json ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:454 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:454: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variant_calls with json ------------------------------------------------------------------------------- api query_variant_calls with protobuf ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:470 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:510: FAILED: {Unknown expression after the reported line} due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api query_variant_calls with protobuf ------------------------------------------------------------------------------- api generate_vcf direct ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:534 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:534: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api generate_vcf direct ------------------------------------------------------------------------------- api generate_vcf with json ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:557 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:557: FAILED: due to unexpected exception with message: basic_string::_M_replace_aux 0.000 s: api generate_vcf with json terminate called after throwing an instance of 'std::length_error' what(): basic_string::_M_replace_aux ------------------------------------------------------------------------------- api generate_vcf with json multiple threads ------------------------------------------------------------------------------- ./src/test/cpp/src/test_genomicsdb_api.cc:570 ............................................................................... ./src/test/cpp/src/test_genomicsdb_api.cc:570: FAILED: {Unknown expression after the reported line} due to a fatal error condition: SIGABRT - Abort (abnormal termination) signal 0.000 s: api generate_vcf with json multiple threads =============================================================================== test cases: 21 | 3 passed | 18 failed assertions: 40 | 22 passed | 18 failed 21: 11:00:19.342 INFO vcf2genomicsdb_init - pid=25129 tid=25129 Merging headers for 1 samples... 21: vcf2genomicsdb_init: ./genomicsdb-htslib/bgzf.c:495: bgzf_hopen: Assertion `compressBound(BGZF_BLOCK_SIZE) < BGZF_MAX_BLOCK_SIZE' failed. 21: command 'vcf2genomicsdb_init -w /tmp/test_tools-3DXst45fd1/ws_3133 -s /tmp/test_tools-3DXst45fd1/sample_list_8935' returned 134 unexpectedly 19/21 Test #21: tools_tests ......................***Failed 0.90 sec 11:00:19.342 INFO vcf2genomicsdb_init - pid=25129 tid=25129 Merging headers for 1 samples... vcf2genomicsdb_init: ./genomicsdb-htslib/bgzf.c:495: bgzf_hopen: Assertion `compressBound(BGZF_BLOCK_SIZE) < BGZF_MAX_BLOCK_SIZE' failed. command 'vcf2genomicsdb_init -w /tmp/test_tools-3DXst45fd1/ws_3133 -s /tmp/test_tools-3DXst45fd1/sample_list_8935' returned 134 unexpectedly 8: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== 8: All tests passed (15273488 assertions in 14 test cases) 8: 20/21 Test #8: test_sparse_array_api ............ Passed 4.11 sec 7: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== 7: All tests passed (140977130 assertions in 4 test cases) 7: 21/21 Test #7: test_dense_array_api ............. Passed 4.16 sec 71% tests passed, 6 tests failed out of 21 Total Test time (real) = 4.17 sec The following tests FAILED: 5 - test_array_iterator (Failed) 6 - test_array_schema_api (Subprocess aborted) 18 - ci_tests (Failed) 19 - ctests (Failed) 20 - api_tests (Subprocess aborted) 21 - tools_tests (Failed) Errors while running CTest make[1]: *** [Makefile:74: test] Error 8 make[1]: Leaving directory '/<>/obj-s390x-linux-gnu' dh_auto_test: error: cd obj-s390x-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 returned exit code 2 make: *** [debian/rules:17: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2023-03-20T11:00:21Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 3739212 Build-Time: 1058 Distribution: lunar-proposed Fail-Stage: build Host Architecture: s390x Install-Time: 40 Job: genomicsdb_1.4.4-2build1.dsc Machine Architecture: s390x Package: genomicsdb Package-Time: 1099 Source-Version: 1.4.4-2build1 Space: 3739212 Status: attempted Version: 1.4.4-2build1 -------------------------------------------------------------------------------- Finished at 2023-03-20T11:00:21Z Build needed 00:18:19, 3739212k disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-25448812 Scanning for processes to kill in build PACKAGEBUILD-25448812