https://launchpad.net/ubuntu/+source/gerris/20131206+dfsg-18build1/+build/14874794 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-007 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 May 17:16:18 ntpdate[1807]: adjust time server 10.211.37.1 offset 0.033129 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14874794 /home/buildd/filecache-default/b7d07d6b68ae68badf26a018a3a0291d50e41e42 Creating target for build PACKAGEBUILD-14874794 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14874794 Starting target for build PACKAGEBUILD-14874794 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14874794 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14874794 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14874794 Updating target for build PACKAGEBUILD-14874794 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 Packages [1016 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe amd64 Packages [8612 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4974 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 Packages [82.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [39.3 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 Packages [250 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [141 kB] Fetched 16.1 MB in 7s (2174 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 liblsan0 libmount1 libmpx2 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libquadmath0 libreadline7 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libtsan0 libubsan0 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tzdata util-linux 75 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 48.6 MB of archives. After this operation, 1400 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-files amd64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo6 amd64 6.1+20180210-2ubuntu2 [83.8 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 bash amd64 4.4.18-2ubuntu2 [614 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 bsdutils amd64 1:2.31.1-0.4ubuntu4 [60.1 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg amd64 1.19.0.5ubuntu3 [1140 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 libext2fs2 amd64 1.44.1-2 [157 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fsprogs amd64 1.44.1-2 [391 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-bin amd64 6.1+20180210-2ubuntu2 [163 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libperl5.26 amd64 5.26.2-3 [3539 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl amd64 5.26.2-3 [201 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl-base amd64 5.26.2-3 [1390 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw6 amd64 6.1+20180210-2ubuntu2 [130 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libuuid1 amd64 2.31.1-0.4ubuntu4 [19.9 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libblkid1 amd64 2.31.1-0.4ubuntu4 [124 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfdisk1 amd64 2.31.1-0.4ubuntu4 [164 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libmount1 amd64 2.31.1-0.4ubuntu4 [136 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsmartcols1 amd64 2.31.1-0.4ubuntu4 [83.5 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 fdisk amd64 2.31.1-0.4ubuntu4 [107 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 util-linux amd64 2.31.1-0.4ubuntu4 [902 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-passwd amd64 3.5.45 [47.4 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libquadmath0 amd64 8.1.0-3ubuntu1 [133 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libitm1 amd64 8.1.0-3ubuntu1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-8-base amd64 8.1.0-3ubuntu1 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgcc1 amd64 1:8.1.0-3ubuntu1 [40.7 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libmpx2 amd64 8.1.0-3ubuntu1 [11.7 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 liblsan0 amd64 8.1.0-3ubuntu1 [132 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libtsan0 amd64 8.1.0-3ubuntu1 [287 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libcc1-0 amd64 8.1.0-3ubuntu1 [39.5 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libatomic1 amd64 8.1.0-3ubuntu1 [9052 B] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgomp1 amd64 8.1.0-3ubuntu1 [76.3 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libstdc++6 amd64 8.1.0-3ubuntu1 [398 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main amd64 libapt-pkg5.0 amd64 1.7.0~alpha0ubuntu1 [801 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main amd64 apt amd64 1.7.0~alpha0ubuntu1 [1166 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 mount amd64 2.31.1-0.4ubuntu4 [106 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcap-ng0 amd64 0.7.9-1 [11.3 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcom-err2 amd64 1.44.1-2 [9392 B] Get:39 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgpg-error0 amd64 1.31-1 [56.0 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main amd64 libss2 amd64 1.44.1-2 [11.1 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses5 amd64 6.1+20180210-2ubuntu2 [95.2 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw5 amd64 6.1+20180210-2ubuntu2 [117 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo5 amd64 6.1+20180210-2ubuntu2 [79.3 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgmp10 amd64 2:6.1.2+dfsg-3 [240 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 libp11-kit0 amd64 0.23.10-2 [186 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 libprocps6 amd64 2:3.3.12-3ubuntu2 [31.5 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses6 amd64 6.1+20180210-2ubuntu2 [100 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 procps amd64 2:3.3.12-3ubuntu2 [225 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main amd64 libargon2-0 amd64 0~20161029-2 [19.9 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 readline-common all 7.0-5 [52.2 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main amd64 libreadline7 amd64 7.0-5 [123 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 libslang2 amd64 2.3.2-1ubuntu1 [425 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsqlite3-0 amd64 3.23.1-1 [501 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 tzdata all 2018e-1 [188 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-x86-64-linux-gnu amd64 2.30-17ubuntu1 [1855 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-common amd64 2.30-17ubuntu1 [193 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils amd64 2.30-17ubuntu1 [3392 B] Get:58 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbinutils amd64 2.30-17ubuntu1 [502 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libasan4 amd64 7.3.0-19ubuntu1 [359 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libubsan0 amd64 7.3.0-19ubuntu1 [126 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libcilkrts5 amd64 7.3.0-19ubuntu1 [42.5 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 g++-7 amd64 7.3.0-19ubuntu1 [7567 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-7 amd64 7.3.0-19ubuntu1 [7444 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libstdc++-7-dev amd64 7.3.0-19ubuntu1 [1462 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgcc-7-dev amd64 7.3.0-19ubuntu1 [2378 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 cpp-7 amd64 7.3.0-19ubuntu1 [6734 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-7-base amd64 7.3.0-19ubuntu1 [18.8 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp amd64 4:7.3.0-3ubuntu3 [27.5 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc amd64 4:7.3.0-3ubuntu3 [5216 B] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++ amd64 4:7.3.0-3ubuntu3 [1592 B] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 build-essential amd64 12.5ubuntu2 [4732 B] Get:74 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fslibs amd64 1.44.1-2 [2704 B] Get:75 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcomerr2 amd64 1.44.1-2 [2692 B] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 libusb-0.1-4 amd64 2:0.1.12-32 [17.4 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 linux-libc-dev amd64 4.15.0-21.22 [1007 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 pinentry-curses amd64 1.1.0-1build1 [35.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.6 MB in 2s (20.6 MB/s) (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_amd64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:amd64 (6.1+20180210-2ubuntu2) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_amd64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_amd64.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_amd64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-2_amd64.deb ... Unpacking libext2fs2:amd64 (1.44.1-2) over (1.44.1-1) ... Setting up libext2fs2:amd64 (1.44.1-2) ... (Reading database ... 12646 files and directories currently installed.) 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Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:amd64 (7.3.0-19ubuntu1) ... Setting up perl (5.26.2-3) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils-x86-64-linux-gnu (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up binutils (2.30-17ubuntu1) ... Setting up gcc-7 (7.3.0-19ubuntu1) ... Setting up g++-7 (7.3.0-19ubuntu1) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14874794 amd64 cosmic-proposed -c chroot:build-PACKAGEBUILD-14874794 --arch=amd64 --dist=cosmic-proposed --nolog -A gerris_20131206+dfsg-18build1.dsc Initiating build PACKAGEBUILD-14874794 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-007.buildd +==============================================================================+ | gerris 20131206+dfsg-18build1 (amd64) 13 May 2018 17:17 | +==============================================================================+ Package: gerris Version: 20131206+dfsg-18build1 Source Version: 20131206+dfsg-18build1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/gerris-EGkNGf/gerris-20131206+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gerris-EGkNGf' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14874794/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- gerris_20131206+dfsg-18build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-uHHv0k/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-uHHv0k/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uHHv0k/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-uHHv0k/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uHHv0k/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-uHHv0k/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (50.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-uHHv0k/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (80.5 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12661 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: autotools-dev, debhelper (>= 10), dh-exec, gfortran, libglib2.0-dev, libgsl0-dev, libgts-bin (>= 0.7.6+darcs121130-1.2), libgts-dev (>= 0.7.6+darcs121130-1.2), libnetcdf-dev, mpi-default-dev, python Filtered Build-Depends: autotools-dev, debhelper (>= 10), dh-exec, gfortran, libglib2.0-dev, libgsl0-dev, libgts-bin (>= 0.7.6+darcs121130-1.2), libgts-dev (>= 0.7.6+darcs121130-1.2), libnetcdf-dev, mpi-default-dev, python dpkg-deb: building package 'sbuild-build-depends-gerris-dummy' in '/<>/resolver-KUmo2A/apt_archive/sbuild-build-depends-gerris-dummy.deb'. Ign:1 copy:/<>/resolver-KUmo2A/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KUmo2A/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-KUmo2A/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KUmo2A/apt_archive ./ Sources [291 B] Get:5 copy:/<>/resolver-KUmo2A/apt_archive ./ Packages [607 B] Fetched 3017 B in 0s (87.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install gerris build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-7 groff-base hdf5-helpers ibverbs-providers intltool-debian libaec-dev libaec0 libarchive-zip-perl libasn1-8-heimdal libbsd0 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgts-0.7-5 libgts-bin libgts-dev libhcrypto4-heimdal libhdf5-100 libhdf5-cpp-100 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libibverbs-dev libibverbs1 libicu60 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpmix2 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib librdmacm1 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssl1.0.0 libsz2 libtimedate-perl libtool libwind0-heimdal libxml2 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python python-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libglib2.0-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libgts-doc libhdf5-doc libhwloc-contrib-plugins libtool-doc netcdf-bin netcdf-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-7 groff-base hdf5-helpers ibverbs-providers intltool-debian libaec-dev libaec0 libarchive-zip-perl libasn1-8-heimdal libbsd0 libcroco3 libcurl3-gnutls libcurl4-gnutls-dev libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libgssapi3-heimdal libgts-0.7-5 libgts-bin libgts-dev libhcrypto4-heimdal libhdf5-100 libhdf5-cpp-100 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libibverbs-dev libibverbs1 libicu60 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libnetcdf-dev libnetcdf13 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpmix2 libpsl5 libpsm-infinipath1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib librdmacm1 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssl1.0.0 libsz2 libtimedate-perl libtool libwind0-heimdal libxml2 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python python-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-gerris-dummy zlib1g-dev 0 upgraded, 137 newly installed, 0 to remove and 0 not upgraded. Need to get 52.2 MB of archives. After this operation, 216 MB of additional disk space will be used. Get:1 copy:/<>/resolver-KUmo2A/apt_archive ./ sbuild-build-depends-gerris-dummy 0.invalid.0 [940 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.6-minimal amd64 3.6.5-9ubuntu1 [531 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 libexpat1 amd64 2.2.5-3 [80.2 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.6-minimal amd64 3.6.5-9ubuntu1 [1601 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3-minimal amd64 3.6.5-3 [23.8 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmpdec2 amd64 2.4.2-1ubuntu1 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3.6-stdlib amd64 3.6.5-9ubuntu1 [1728 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 python3.6 amd64 3.6.5-9ubuntu1 [186 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpython3-stdlib amd64 3.6.5-3 [7276 B] 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cosmic/main amd64 libicu60 amd64 60.2-3ubuntu3 [8054 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1ubuntu1 [662 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext-base amd64 0.19.8.1-6build1 [50.0 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main amd64 libedit2 amd64 3.1-20170329-1build1 [76.7 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkrb5support0 amd64 1.16-2build1 [31.1 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 libk5crypto3 amd64 1.16-2build1 [85.6 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu3 [8704 B] Get:38 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkrb5-3 amd64 1.16-2build1 [279 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgssapi-krb5-2 amd64 1.16-2build1 [122 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnuma1 amd64 2.0.11-2.2 [22.2 kB] Get:41 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libgfortran4 amd64 7.3.0-19ubuntu1 [492 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgfortran-7-dev amd64 7.3.0-19ubuntu1 [530 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gfortran-7 amd64 7.3.0-19ubuntu1 [7103 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main amd64 gfortran amd64 4:7.3.0-3ubuntu3 [1352 B] Get:65 http://ftpmaster.internal/ubuntu cosmic/universe amd64 hdf5-helpers amd64 1.10.0-patch1+docs-4 [12.3 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnl-3-200 amd64 3.2.29-0ubuntu3 [52.8 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnl-route-3-200 amd64 3.2.29-0ubuntu3 [146 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libibverbs1 amd64 18.0-1 [48.4 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 ibverbs-providers amd64 18.0-1 [171 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libaec0 amd64 1.0.2-1 [19.1 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-1 [41.3 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-1 [175 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-1 [29.3 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-1 [85.9 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-1 [47.8 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-1 [107 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-1 [206 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-1 [14.8 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-1 [96.5 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main amd64 libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-5ubuntu1 [155 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnghttp2-14 amd64 1.30.0-1ubuntu1 [77.8 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcurl3-gnutls amd64 7.58.0-2ubuntu3 [212 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcurl4-gnutls-dev amd64 7.58.0-2ubuntu3 [293 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4build1 [133 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main 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amd64 mpi-default-dev amd64 1.10 [3888 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.2 MB in 4s (12.0 MB/s) Selecting previously unselected package libpython3.6-minimal:amd64. (Reading database ... 12661 files and directories currently installed.) Preparing to unpack .../0-libpython3.6-minimal_3.6.5-9ubuntu1_amd64.deb ... Unpacking libpython3.6-minimal:amd64 (3.6.5-9ubuntu1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../1-libexpat1_2.2.5-3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../2-python3.6-minimal_3.6.5-9ubuntu1_amd64.deb ... Unpacking python3.6-minimal (3.6.5-9ubuntu1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.6.5-3_amd64.deb ... Unpacking python3-minimal (3.6.5-3) ... Selecting previously unselected package mime-support. Preparing to unpack .../4-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../5-libmpdec2_2.4.2-1ubuntu1_amd64.deb ... 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Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libkrb5support0:amd64 (1.16-2build1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:amd64 (1:5.33-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libjpeg-turbo8-dev:amd64 (1.5.2-0ubuntu5) ... Setting up libglib2.0-data (2.56.1-2ubuntu1) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4build1) ... Setting up openmpi-common (3.0.1.real-4) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libltdl7:amd64 (2.4.6-2.1) ... Setting up libgfortran-7-dev:amd64 (7.3.0-19ubuntu1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up gfortran-7 (7.3.0-19ubuntu1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-9) ... Setting up libpcre32-3:amd64 (2:8.39-9) ... Setting up libpcre16-3:amd64 (2:8.39-9) ... Setting up libnuma-dev:amd64 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... Setting up libkeyutils1:amd64 (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.29-0ubuntu3) ... Setting up libgslcblas0:amd64 (2.4+dfsg-6) ... Setting up libglib2.0-bin (2.56.1-2ubuntu1) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libmpdec2:amd64 (2.4.2-1ubuntu1) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up gfortran (4:7.3.0-3ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpython3.6-stdlib:amd64 (3.6.5-9ubuntu1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libk5crypto3:amd64 (1.16-2build1) ... Setting up libpcre3-dev:amd64 (2:8.39-9) ... Setting up python3.6 (3.6.5-9ubuntu1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4) ... Setting up libltdl-dev:amd64 (2.4.6-2.1) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libgsl23:amd64 (2.4+dfsg-6) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libgsl-dev (2.4+dfsg-6) ... Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up python2.7 (2.7.15-1) ... Setting up libnl-route-3-200:amd64 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:amd64 (1.11.10-1) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libpython-stdlib:amd64 (2.7.15~rc1-1) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:amd64 (1.16-2build1) ... Setting up libgts-bin (0.7.6+darcs121130-4) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up python (2.7.15~rc1-1) ... Setting up libtool (2.4.6-2.1) ... Setting up libpython3-stdlib:amd64 (3.6.5-3) ... Setting up libibverbs1:amd64 (18.0-1) ... Setting up libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-4) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.5-3) ... Setting up libhwloc-dev:amd64 (1.11.10-1) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpmix2:amd64 (2.1.1~rc1-4) ... Setting up librdmacm1:amd64 (18.0-1) ... Setting up libgssapi-krb5-2:amd64 (1.16-2build1) ... Setting up ibverbs-providers:amd64 (18.0-1) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up python3-lib2to3 (3.6.5-3) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libibverbs-dev:amd64 (18.0-1) ... Setting up python3-distutils (3.6.5-3) ... Setting up libfabric1 (1.5.3-1) ... Setting up libglib2.0-dev-bin (2.56.1-2ubuntu1) ... Setting up libglib2.0-dev:amd64 (2.56.1-2ubuntu1) ... Setting up libldap-2.4-2:amd64 (2.4.46+dfsg-5ubuntu1) ... Setting up libgts-dev:amd64 (0.7.6+darcs121130-4) ... Setting up libopenmpi3:amd64 (3.0.1.real-4) ... Setting up libcurl3-gnutls:amd64 (7.58.0-2ubuntu3) ... Setting up openmpi-bin (3.0.1.real-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libnetcdf13:amd64 (1:4.6.1-1) ... Setting up libcurl4-gnutls-dev:amd64 (7.58.0-2ubuntu3) ... Setting up libnetcdf-dev (1:4.6.1-1) ... Setting up libopenmpi-dev:amd64 (3.0.1.real-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.10) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up dh-exec (0.23build1) ... Setting up sbuild-build-depends-gerris-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-124-generic amd64 (x86_64) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-19ubuntu1 gcc-7_7.3.0-19ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu1 linux-libc-dev_4.15.0-21.22 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-x86-64-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-19ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-exec_0.23build1 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-19ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-19ubuntu1 gcc-7-base_7.3.0-19ubuntu1 gcc-8-base_8.1.0-3ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gfortran_4:7.3.0-3ubuntu3 gfortran-7_7.3.0-19ubuntu1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hdf5-helpers_1.10.0-patch1+docs-4 hostname_3.20 ibverbs-providers_18.0-1 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 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liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpdec2_2.4.2-1ubuntu1 libmpfr6_4.0.1-1 libmpx2_8.1.0-3ubuntu1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnetcdf-dev_1:4.6.1-1 libnetcdf13_1:4.6.1-1 libnettle6_3.4-1 libnghttp2-14_1.30.0-1ubuntu1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libopenmpi-dev_3.0.1.real-4 libopenmpi3_3.0.1.real-4 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpmix2_2.1.1~rc1-4 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpsl5_0.20.1-1 libpsm-infinipath1_3.3+20.604758e7-5 libpython-stdlib_2.7.15~rc1-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.5-9ubuntu1 libpython3.6-stdlib_3.6.5-9ubuntu1 libquadmath0_8.1.0-3ubuntu1 librdmacm1_18.0-1 libreadline7_7.0-5 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu1 libsystemd0_237-3ubuntu10 libsz2_1.0.2-1 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libtsan0_8.1.0-3ubuntu1 libubsan0_7.3.0-19ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.31.1-0.4ubuntu4 libwind0-heimdal_7.5.0+dfsg-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-21.22 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.31.1-0.4ubuntu4 mpi-default-dev_1.10 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.0.1.real-4 openmpi-common_3.0.1.real-4 openssh-client_1:7.7p1-2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 python_2.7.15~rc1-1 python-minimal_2.7.15~rc1-1 python2.7_2.7.15-1 python2.7-minimal_2.7.15-1 python3_3.6.5-3 python3-distutils_3.6.5-3 python3-lib2to3_3.6.5-3 python3-minimal_3.6.5-3 python3.6_3.6.5-9ubuntu1 python3.6-minimal_3.6.5-9ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gerris-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun May 13 17:09:26 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gerris_20131206+dfsg-18build1.dsc dpkg-source: info: extracting gerris in gerris-20131206+dfsg dpkg-source: info: unpacking gerris_20131206+dfsg.orig.tar.gz dpkg-source: info: unpacking gerris_20131206+dfsg-18build1.debian.tar.xz dpkg-source: info: applying 01_automake_doc_examples dpkg-source: info: applying 02_fix_makefiles.patch dpkg-source: info: applying 03_build_funct.patch dpkg-source: info: applying 04_replace_ffmpeg_by_avconv.patch dpkg-source: info: applying 05_reproducible_build.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14874794 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14874794 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14874794 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package gerris dpkg-buildpackage: info: source version 20131206+dfsg-18build1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build gerris-20131206+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:50: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:50: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:108: installing './compile' configure.ac:50: installing './missing' doc/Makefile.am:9: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') doc/Makefile.am:12: warning: source file '$(top_srcdir)/src/init.c' is in a subdirectory, doc/Makefile.am:12: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. doc/Makefile.am: installing './depcomp' doc/examples/Makefile.am:118: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') doc/examples/Makefile.am:123: warning: source file '$(top_srcdir)/src/init.c' is in a subdirectory, doc/examples/Makefile.am:123: but option 'subdir-objects' is disabled parallel-tests: installing './test-driver' modules/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tools/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/gerris-20131206+dfsg' dh_auto_configure -- --enable-mpi ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-mpi checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for mpicc... yes checking for gcc... mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking whether mpicc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of mpicc... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for library containing strerror... none required checking for ANSI C header files... (cached) yes checking whether pointers can be stored in doubles... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTS... yes checking whether modules are supported... yes checking for pkg-config... yes checking for m4... yes checking check whether m4 accepts the -P option... yes checking for pj_fwd in -lproj... no configure: WARNING: libproj not found. Map module will not be available. checking proj_api.h usability... no checking proj_api.h presence... no checking for proj_api.h... no checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 0.2.5... yes checking for nc_open in -lnetcdf... yes checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for ode-config... no configure: WARNING: ODE not found. ode module will not be available. checking for HYPRE_IJMatrixCreate in -lHYPRE... no configure: WARNING: HYPRE not found. hypre Module won't be available. checking for lis_initialize in -llis... no configure: WARNING: lis not found. lis Module won't be available. checking for FFTW3... no checking fenv.h usability... yes checking fenv.h presence... yes checking for fenv.h... yes checking for unistd.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for getopt_long... yes checking for g_mkdtemp... yes checking for open_memstream... yes checking for funopen... no checking for open_memstream... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gerris2D.pc config.status: creating src/gerris3D.pc config.status: creating tools/Makefile config.status: creating modules/Makefile config.status: creating modules/RStarTree/Makefile config.status: creating modules/kdt/Makefile config.status: creating modules/fes2004/Makefile config.status: creating modules/wavewatch/Makefile config.status: creating modules/culvert/Makefile config.status: creating test/Makefile config.status: creating doc/Makefile config.status: creating doc/tutorial/Makefile config.status: creating doc/examples/Makefile config.status: creating doc/manpages/Makefile config.status: creating doc/examples/gfs2doc config.status: creating doc/examples/gfs-highlight config.status: creating doc/examples/crossref.sh config.status: creating desktop/Makefile config.status: creating debian/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration summary System = x86_64-pc-linux-gnu C Compiler = mpicc C Flags = -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 MPI enabled = yes GModule support = yes pkg-config = yes m4 = yes m4 options = -P open_memstream = yes Modules map = no tide = yes stokes = yes wavewatch = no hypre = no lis = no agmg = no ode = no bubbles = yes fft = no make[1]: Leaving directory '/<>/gerris-20131206+dfsg' dh_auto_build make -j1 make[1]: Entering directory '/<>/gerris-20131206+dfsg' make all-recursive make[2]: Entering directory '/<>/gerris-20131206+dfsg' Making all in src make[3]: Entering directory '/<>/gerris-20131206+dfsg/src' make all-am make[4]: Entering directory '/<>/gerris-20131206+dfsg/src' /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-ftt.lo `test -f 'ftt.c' || echo './'`ftt.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from ftt.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-fluid.lo `test -f 'fluid.c' || echo './'`fluid.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from fluid.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fluid.c:126:20: warning: ‘interpolate_1D2’ defined but not used [-Wunused-function] static GfsGradient interpolate_1D2 (FttCell * cell, ^~~~~~~~~~~~~~~ fluid.c: In function ‘face_bilinear’: fluid.c:1151:37: warning: ‘d[2]’ is used uninitialized in this function [-Wuninitialized] d1[0] = d[1]; d1[1] = d[0]; d1[2] = d[2]; ~~~~~~^~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-variable.lo `test -f 'variable.c' || echo './'`variable.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from variable.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-output.lo `test -f 'output.c' || echo './'`output.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from output.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-solid.lo `test -f 'solid.c' || echo './'`solid.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from solid.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-poisson.lo `test -f 'poisson.c' || echo './'`poisson.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from poisson.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-advection.lo `test -f 'advection.c' || echo './'`advection.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from advection.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-boundary.lo `test -f 'boundary.c' || echo './'`boundary.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from boundary.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-mpi_boundary.lo `test -f 'mpi_boundary.c' || echo './'`mpi_boundary.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from mpi_boundary.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mpi_boundary.c: In function ‘gfs_boundary_mpi_init’: mpi_boundary.c:280:5: warning: ‘MPI_Attr_get’ is deprecated: MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0 [-Wdeprecated-declarations] MPI_Attr_get (MPI_COMM_WORLD, MPI_TAG_UB, &tagub, &flag); ^~~~~~~~~~~~ In file included from utils.h:34:0, from boundary.h:24, from domain.h:23, from mpi_boundary.c:24: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1241:20: note: declared here OMPI_DECLSPEC int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ^~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-timestep.lo `test -f 'timestep.c' || echo './'`timestep.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from timestep.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-domain.lo `test -f 'domain.c' || echo './'`domain.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from domain.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-init.lo `test -f 'init.c' || echo './'`init.c init.c:33:0: warning: "_GNU_SOURCE" redefined # define _GNU_SOURCE :0:0: note: this is the location of the previous definition In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/fenv.h:26, from init.c:34: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ init.c: In function ‘gfs_init’: init.c:416:5: warning: ‘MPI_Errhandler_set’ is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL); ^~~~~~~~~~~~~~~~~~ In file included from utils.h:34:0, from boundary.h:24, from init.c:49: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1353:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-refine.lo `test -f 'refine.c' || echo './'`refine.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from refine.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-event.lo `test -f 'event.c' || echo './'`event.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from event.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-simulation.lo `test -f 'simulation.c' || echo './'`simulation.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from simulation.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-graphic.lo `test -f 'graphic.c' || echo './'`graphic.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from graphic.c:30: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ graphic.c: In function ‘grow_curve’: graphic.c:1986:17: warning: variable ‘p1’ set but not used [-Wunused-but-set-variable] FttVector p1; ^~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-adaptive.lo `test -f 'adaptive.c' || echo './'`adaptive.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from adaptive.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-source.lo `test -f 'source.c' || echo './'`source.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from source.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-tension.lo `test -f 'tension.c' || echo './'`tension.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from tension.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-vof.lo `test -f 'vof.c' || echo './'`vof.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from vof.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vof.c: In function ‘gfs_height_curvature’: vof.c:2619:11: warning: unused variable ‘area’ [-Wunused-variable] gdouble area = gfs_vof_center (cell, t, &fc); ^~~~ vof.c: In function ‘gfs_height_curvature_new’: vof.c:2871:11: warning: unused variable ‘area’ [-Wunused-variable] gdouble area = gfs_vof_center (cell, GFS_VARIABLE_TRACER_VOF (t), &fc); ^~~~ At top level: vof.c:1771:16: warning: ‘face_value’ defined but not used [-Wunused-function] static gdouble face_value (FttCell * cell, FttDirection d, GfsVariable * v) ^~~~~~~~~~ vof.c:850:13: warning: ‘youngs_normal’ defined but not used [-Wunused-function] static void youngs_normal (FttCell * cell, GfsVariable * v, FttVector * n) ^~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-utils.lo `test -f 'utils.c' || echo './'`utils.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from utils.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-ocean.lo `test -f 'ocean.c' || echo './'`ocean.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from ocean.c:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ocean.c: In function ‘correct_normal_velocity’: ocean.c:45:15: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] FttFaceType type; ^~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-wave.lo `test -f 'wave.c' || echo './'`wave.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from wave.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-levelset.lo `test -f 'levelset.c' || echo './'`levelset.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from levelset.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-cartesian.lo `test -f 'cartesian.c' || echo './'`cartesian.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from cartesian.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-surface.lo `test -f 'surface.c' || echo './'`surface.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from simulation.h:27, from surface.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-unstructured.lo `test -f 'unstructured.c' || echo './'`unstructured.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from unstructured.h:24, from unstructured.c:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-map.lo `test -f 'map.c' || echo './'`map.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from advection.h:27, from timestep.h:27, from variable.h:29, from map.h:27, from map.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ map.c: In function ‘gfs_map_read’: map.c:34:12: warning: variable ‘class_changed’ set but not used [-Wunused-but-set-variable] gboolean class_changed = FALSE; ^~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-river.lo `test -f 'river.c' || echo './'`river.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from river.c:55: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-moving.lo `test -f 'moving.c' || echo './'`moving.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from moving.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from moving.c:49:0: moving2.c: In function ‘second_order_face_fractions’: moving2.c:257:33: warning: variable ‘s1’ set but not used [-Wunused-but-set-variable] gdouble dt1, dt2, dto1, dto2, s1, s2; ^~ moving2.c: In function ‘old_solid_fractions_from_children’: moving2.c:731:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < FTT_CELLS; i++) ^~~ moving2.c:735:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ gfs_cell_init_solid_fractions_from_children (cell); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-balance.lo `test -f 'balance.c' || echo './'`balance.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from event.h:27, from balance.h:27, from balance.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-metric.lo `test -f 'metric.c' || echo './'`metric.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from metric.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ metric.c:241:15: warning: ‘kpu_2d_l4’ defined but not used [-Wunused-variable] static double kpu_2d_l4[17][3] = { ^~~~~~~~~ metric.c:221:15: warning: ‘kpu_2d_l2’ defined but not used [-Wunused-variable] static double kpu_2d_l2[5][3] = { ^~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-particle.lo `test -f 'particle.c' || echo './'`particle.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from particle.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libgfs2D.la -rpath /usr/lib/x86_64-linux-gnu libgfs2D_la-ftt.lo libgfs2D_la-fluid.lo libgfs2D_la-variable.lo libgfs2D_la-output.lo libgfs2D_la-solid.lo libgfs2D_la-poisson.lo libgfs2D_la-advection.lo libgfs2D_la-boundary.lo libgfs2D_la-mpi_boundary.lo libgfs2D_la-timestep.lo libgfs2D_la-domain.lo libgfs2D_la-init.lo libgfs2D_la-refine.lo libgfs2D_la-event.lo libgfs2D_la-simulation.lo libgfs2D_la-graphic.lo libgfs2D_la-adaptive.lo libgfs2D_la-source.lo libgfs2D_la-tension.lo libgfs2D_la-vof.lo libgfs2D_la-utils.lo libgfs2D_la-ocean.lo libgfs2D_la-wave.lo libgfs2D_la-levelset.lo libgfs2D_la-cartesian.lo libgfs2D_la-surface.lo libgfs2D_la-unstructured.lo libgfs2D_la-map.lo libgfs2D_la-river.lo libgfs2D_la-moving.lo libgfs2D_la-balance.lo libgfs2D_la-metric.lo libgfs2D_la-particle.lo -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ftt.lo ftt.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from ftt.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o fluid.lo fluid.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from fluid.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fluid.c: In function ‘gfs_cell_coarse_fine’: fluid.c:1918:42: warning: unused variable ‘gz4’ [-Wunused-variable] double gz3 = g.z*(a[3] + a[7])/sa, gz4 = - g.z*(a[1] + a[5])/sa; ^~~ fluid.c:1918:14: warning: unused variable ‘gz3’ [-Wunused-variable] double gz3 = g.z*(a[3] + a[7])/sa, gz4 = - g.z*(a[1] + a[5])/sa; ^~~ fluid.c:1916:42: warning: unused variable ‘gy4’ [-Wunused-variable] double gy3 = g.y*(a[6] + a[7])/sa, gy4 = - g.y*(a[4] + a[5])/sa; ^~~ fluid.c:1916:14: warning: unused variable ‘gy3’ [-Wunused-variable] double gy3 = g.y*(a[6] + a[7])/sa, gy4 = - g.y*(a[4] + a[5])/sa; ^~~ fluid.c:1914:42: warning: unused variable ‘gx4’ [-Wunused-variable] double gx3 = g.x*(a[4] + a[6])/sa, gx4 = - g.x*(a[5] + a[7])/sa; ^~~ fluid.c:1914:14: warning: unused variable ‘gx3’ [-Wunused-variable] double gx3 = g.x*(a[4] + a[6])/sa, gx4 = - g.x*(a[5] + a[7])/sa; ^~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o variable.lo variable.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from variable.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o output.lo output.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from output.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o solid.lo solid.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from solid.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ solid.c: In function ‘set_solid_fractions_from_surface’: solid.c:561:21: warning: comparison between ‘FttComponent {aka enum }’ and ‘enum ’ [-Wenum-compare] for (c = 1; c < FTT_NEIGHBORS; c++) ^ In file included from solid.c:338:0: At top level: isocube.h:95:21: warning: ‘corner’ defined but not used [-Wunused-variable] static FttDirection corner[8][3] = { ^~~~~~ isocube.h:66:18: warning: ‘cvertex’ defined but not used [-Wunused-variable] static FttVector cvertex[8] = { ^~~~~~~ isocube.h:52:14: warning: ‘connectv’ defined but not used [-Wunused-variable] static guint connectv[12][2][4] = { ^~~~~~~~ isocube.h:47:18: warning: ‘edge’ defined but not used [-Wunused-variable] static FttVector edge[12][2] = { ^~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o poisson.lo poisson.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from poisson.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o advection.lo advection.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from advection.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o boundary.lo boundary.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from boundary.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o mpi_boundary.lo mpi_boundary.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from mpi_boundary.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mpi_boundary.c: In function ‘gfs_boundary_mpi_init’: mpi_boundary.c:280:5: warning: ‘MPI_Attr_get’ is deprecated: MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0 [-Wdeprecated-declarations] MPI_Attr_get (MPI_COMM_WORLD, MPI_TAG_UB, &tagub, &flag); ^~~~~~~~~~~~ In file included from utils.h:34:0, from boundary.h:24, from domain.h:23, from mpi_boundary.c:24: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1241:20: note: declared here OMPI_DECLSPEC int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ^~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o timestep.lo timestep.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from timestep.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o domain.lo domain.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from domain.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o init.lo init.c init.c:33:0: warning: "_GNU_SOURCE" redefined # define _GNU_SOURCE :0:0: note: this is the location of the previous definition In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/fenv.h:26, from init.c:34: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ init.c: In function ‘gfs_init’: init.c:416:5: warning: ‘MPI_Errhandler_set’ is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL); ^~~~~~~~~~~~~~~~~~ In file included from utils.h:34:0, from boundary.h:24, from init.c:49: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1353:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o refine.lo refine.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from refine.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o event.lo event.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from event.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o simulation.lo simulation.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from simulation.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o graphic.lo graphic.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from graphic.c:30: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from graphic.c:42:0: isocube.h:66:18: warning: ‘cvertex’ defined but not used [-Wunused-variable] static FttVector cvertex[8] = { ^~~~~~~ isocube.h:52:14: warning: ‘connectv’ defined but not used [-Wunused-variable] static guint connectv[12][2][4] = { ^~~~~~~~ isocube.h:39:14: warning: ‘face_v’ defined but not used [-Wunused-variable] static guint face_v[6][4] = { ^~~~~~ isocube.h:31:14: warning: ‘face’ defined but not used [-Wunused-variable] static guint face[6][4][2] = { ^~~~ isocube.h:27:18: warning: ‘vertex’ defined but not used [-Wunused-variable] static FttVector vertex[8] = { ^~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o adaptive.lo adaptive.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from adaptive.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o source.lo source.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from source.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o tension.lo tension.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from tension.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o vof.lo vof.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from vof.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vof.c:2682:13: warning: ‘curvature_from_h’ defined but not used [-Wunused-function] static void curvature_from_h (FttCell * cell, GfsDomain * domain, ^~~~~~~~~~~~~~~~ vof.c:2646:16: warning: ‘neighboring_column’ defined but not used [-Wunused-function] static gdouble neighboring_column (FttCell * cell, ^~~~~~~~~~~~~~~~~~ vof.c:1771:16: warning: ‘face_value’ defined but not used [-Wunused-function] static gdouble face_value (FttCell * cell, FttDirection d, GfsVariable * v) ^~~~~~~~~~ vof.c:850:13: warning: ‘youngs_normal’ defined but not used [-Wunused-function] static void youngs_normal (FttCell * cell, GfsVariable * v, FttVector * n) ^~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o utils.lo utils.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from utils.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ocean.lo ocean.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from ocean.c:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ocean.c: In function ‘correct_normal_velocity’: ocean.c:45:15: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] FttFaceType type; ^~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o wave.lo wave.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from wave.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o levelset.lo levelset.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from levelset.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o cartesian.lo cartesian.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from cartesian.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o surface.lo surface.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from simulation.h:27, from surface.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o unstructured.lo unstructured.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from unstructured.h:24, from unstructured.c:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o map.lo map.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from advection.h:27, from timestep.h:27, from variable.h:29, from map.h:27, from map.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ map.c: In function ‘gfs_map_read’: map.c:34:12: warning: variable ‘class_changed’ set but not used [-Wunused-but-set-variable] gboolean class_changed = FALSE; ^~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o river.lo river.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from river.c:55: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o moving.lo moving.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from moving.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from moving.c:49:0: moving2.c: In function ‘second_order_face_fractions’: moving2.c:257:33: warning: variable ‘s1’ set but not used [-Wunused-but-set-variable] gdouble dt1, dt2, dto1, dto2, s1, s2; ^~ moving2.c: In function ‘old_solid_fractions_from_children’: moving2.c:731:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < FTT_CELLS; i++) ^~~ moving2.c:735:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ gfs_cell_init_solid_fractions_from_children (cell); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o balance.lo balance.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from event.h:27, from balance.h:27, from balance.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o metric.lo metric.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from metric.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ metric.c:241:15: warning: ‘kpu_2d_l4’ defined but not used [-Wunused-variable] static double kpu_2d_l4[17][3] = { ^~~~~~~~~ metric.c:221:15: warning: ‘kpu_2d_l2’ defined but not used [-Wunused-variable] static double kpu_2d_l2[5][3] = { ^~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o particle.lo particle.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from particle.c:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libgfs3D.la -rpath /usr/lib/x86_64-linux-gnu ftt.lo fluid.lo variable.lo output.lo solid.lo poisson.lo advection.lo boundary.lo mpi_boundary.lo timestep.lo domain.lo init.lo refine.lo event.lo simulation.lo graphic.lo adaptive.lo source.lo tension.lo vof.lo utils.lo ocean.lo wave.lo levelset.lo cartesian.lo surface.lo unstructured.lo map.lo river.lo moving.lo balance.lo metric.lo particle.lo -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gerris2D-gerris.o `test -f 'gerris.c' || echo './'`gerris.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from gerris.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gerris2D gerris2D-gerris.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gerris.o gerris.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from gerris.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gerris3D gerris.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 make[4]: Leaving directory '/<>/gerris-20131206+dfsg/src' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/src' Making all in modules make[3]: Entering directory '/<>/gerris-20131206+dfsg/modules' Making all in RStarTree make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/RStarTree' /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RStarTree.lo `test -f 'RStarTree.c' || echo './'`RStarTree.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from RStarTree.c:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInstDel.lo `test -f 'RSTInstDel.c' || echo './'`RSTInstDel.c In file included from /usr/include/x86_64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTInstDel.c:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ RSTInstDel.c: In function ‘SplitAndDistributData’: RSTInstDel.c:748:7: warning: ‘axisindex’ may be used uninitialized in this function [-Wmaybe-uninitialized] axisindex; ^~~~~~~~~ RSTInstDel.c:971:6: warning: ‘axis’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (axis != (*par).maxdim || axsortside != currsortside) { ^ RSTInstDel.c:744:32: warning: ‘axsortside’ may be used uninitialized in this function [-Wmaybe-uninitialized] Side sortside, currsortside, axsortside; ^~~~~~~~~~ RSTInstDel.c:952:8: warning: ‘backvalvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (backvalvalue <= validvalue) { ^ RSTInstDel.c:952:8: warning: ‘validvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] RSTInstDel.c:956:14: warning: ‘backvaledge’ may be used uninitialized in this function [-Wmaybe-uninitialized] validedge= validedge+backvaledge; ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ RSTInstDel.c:956:14: warning: ‘validedge’ may be used uninitialized in this function [-Wmaybe-uninitialized] RSTInstDel.c: In function ‘SplitAndDistributDir’: RSTInstDel.c:482:7: warning: ‘axisindex’ may be used uninitialized in this function [-Wmaybe-uninitialized] axisindex; ^~~~~~~~~ RSTInstDel.c:705:6: warning: ‘axis’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (axis != (*par).maxdim || axsortside != currsortside) { ^ RSTInstDel.c:478:32: warning: ‘axsortside’ may be used uninitialized in this function [-Wmaybe-uninitialized] Side sortside, currsortside, axsortside; ^~~~~~~~~~ RSTInstDel.c:686:8: warning: ‘backvalvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (backvalvalue <= validvalue) { ^ RSTInstDel.c:686:8: warning: ‘validvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] RSTInstDel.c:690:14: warning: ‘backvaledge’ may be used uninitialized in this function [-Wmaybe-uninitialized] validedge= validedge+backvaledge; ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ RSTInstDel.c:690:14: warning: ‘validedge’ may be used uninitialized in this function [-Wmaybe-uninitialized] /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTJoin.lo `test -f 'RSTJoin.c' || echo './'`RSTJoin.c In file included from /usr/include/x86_64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTJoin.c:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTUtil.lo `test -f 'RSTUtil.c' || echo './'`RSTUtil.c In file included from /usr/include/x86_64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTUtil.c:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ RSTUtil.c: In function ‘Covers’: RSTUtil.c:204:7: warning: variable ‘maxdim’ set but not used [-Wunused-but-set-variable] int maxdim; ^~~~~~ RSTUtil.c: In function ‘ChooseSubtree’: RSTUtil.c:546:16: warning: variable ‘inv’ set but not used [-Wunused-but-set-variable] int maxexam, inv; ^~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInOut.lo `test -f 'RSTInOut.c' || echo './'`RSTInOut.c In file included from /usr/include/x86_64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTInOut.c:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInterUtil.lo `test -f 'RSTInterUtil.c' || echo './'`RSTInterUtil.c In file included from /usr/include/x86_64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTInterUtil.c:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ RSTInterUtil.c: In function ‘SetCheckDir’: RSTInterUtil.c:208:7: warning: variable ‘PACKEDSIZE_DIRnofentries’ set but not used [-Wunused-but-set-variable] PACKEDSIZE_DIRnofentries, REALSIZE_DIRnofentries; ^~~~~~~~~~~~~~~~~~~~~~~~ RSTInterUtil.c:207:7: warning: variable ‘PACKEDdirentrylen’ set but not used [-Wunused-but-set-variable] PACKEDdirentrylen, REALdirentrylen, ^~~~~~~~~~~~~~~~~ RSTInterUtil.c: In function ‘SetCheckData’: RSTInterUtil.c:350:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] fprintf(stderr,"%s %d\n"," Expecting:",sizeof(typinfo)); ~^ %ld /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTQuery.lo `test -f 'RSTQuery.c' || echo './'`RSTQuery.c In file included from /usr/include/x86_64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTQuery.c:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libcSmRST.la libcSmRST_la-RStarTree.lo libcSmRST_la-RSTInstDel.lo libcSmRST_la-RSTJoin.lo libcSmRST_la-RSTUtil.lo libcSmRST_la-RSTInOut.lo libcSmRST_la-RSTInterUtil.lo libcSmRST_la-RSTQuery.lo ar: `u' modifier ignored since `D' is the default (see `U') make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/RStarTree' Making all in kdt make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/kdt' /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libkdt_la-kdt.lo `test -f 'kdt.c' || echo './'`kdt.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from kdt.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ kdt.c:450:13: warning: ‘kdt_rect_write’ defined but not used [-Wunused-function] static void kdt_rect_write (const KdtRect rect, FILE * fp) ^~~~~~~~~~~~~~ kdt.c:252:13: warning: ‘kdt_write’ defined but not used [-Wunused-function] static void kdt_write (KdtHeap * h, FILE * fp) ^~~~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libkdt.la libkdt_la-kdt.lo ar: `u' modifier ignored since `D' is the default (see `U') mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o xyz2kdt-xyz2kdt.o `test -f 'xyz2kdt.c' || echo './'`xyz2kdt.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from xyz2kdt.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o xyz2kdt xyz2kdt-xyz2kdt.o -lkdt -lm mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o kdt2kdt-kdt2kdt.o `test -f 'kdt2kdt.c' || echo './'`kdt2kdt.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from kdt2kdt.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o kdt2kdt kdt2kdt-kdt2kdt.o -lkdt -lm mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o kdtquery-kdtquery.o `test -f 'kdtquery.c' || echo './'`kdtquery.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from kdtquery.c:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o kdtquery kdtquery-kdtquery.o -lkdt -lm make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/kdt' Making all in fes2004 make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/fes2004' /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_alloc.lo `test -f 'fes2004_alloc.c' || echo './'`fes2004_alloc.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from fes2004_lib.h:12, from fes2004_alloc.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_error.lo `test -f 'fes2004_error.c' || echo './'`fes2004_error.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from fes2004_error.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fes2004_error.c:4:6: warning: no previous prototype for ‘print_error_1’ [-Wmissing-prototypes] void print_error_1() ^~~~~~~~~~~~~ fes2004_error.c:11:6: warning: no previous prototype for ‘print_error_2’ [-Wmissing-prototypes] void print_error_2() ^~~~~~~~~~~~~ fes2004_error.c:18:6: warning: no previous prototype for ‘print_error_3’ [-Wmissing-prototypes] void print_error_3(char *message) ^~~~~~~~~~~~~ fes2004_error.c:25:6: warning: no previous prototype for ‘print_error_4’ [-Wmissing-prototypes] void print_error_4(char *message) ^~~~~~~~~~~~~ fes2004_error.c:32:6: warning: no previous prototype for ‘print_error_5’ [-Wmissing-prototypes] void print_error_5(char *message) ^~~~~~~~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_extraction.lo `test -f 'fes2004_extraction.c' || echo './'`fes2004_extraction.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from fes2004_lib.h:12, from fes2004_extraction.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_init.lo `test -f 'fes2004_init.c' || echo './'`fes2004_init.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from fes2004_lib.h:12, from fes2004_init.c:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fes2004_init.c: In function ‘init_spectrum’: fes2004_init.c:42:7: warning: variable ‘rstatus’ set but not used [-Wunused-but-set-variable] int rstatus; ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_io.lo `test -f 'fes2004_io.c' || echo './'`fes2004_io.c In file included from /usr/include/errno.h:25:0, from /usr/include/netcdf.h:16, from fes2004_io.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fes2004_io.c: In function ‘load_netcdf_fes2004_data’: fes2004_io.c:16:9: warning: variable ‘rstatus’ set but not used [-Wunused-but-set-variable] int i,rstatus; ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_prediction.lo `test -f 'fes2004_prediction.c' || echo './'`fes2004_prediction.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from fes2004_lib.h:12, from fes2004_prediction.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_kernel.lo `test -f 'fes2004_kernel.c' || echo './'`fes2004_kernel.c In file included from /usr/include/errno.h:25:0, from /usr/include/netcdf.h:16, from fes2004_kernel.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fes2004_kernel.c: In function ‘pred_coeur’: fes2004_kernel.c:115:10: warning: variable ‘pi’ set but not used [-Wunused-but-set-variable] double pi; ^~ fes2004_kernel.c: In function ‘extract_coeur’: fes2004_kernel.c:191:10: warning: variable ‘pi’ set but not used [-Wunused-but-set-variable] double pi; ^~ fes2004_kernel.c: In function ‘compute_admittance’: fes2004_kernel.c:457:11: warning: variable ‘gsl_out’ set but not used [-Wunused-but-set-variable] int i,n,gsl_out; ^~~~~~~ fes2004_kernel.c: In function ‘astronomic_angle’: fes2004_kernel.c:663:16: warning: variable ‘sin2I’ set but not used [-Wunused-but-set-variable] double t2,t4,sin2I,s2; ^~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libfes.la libfes_la-fes2004_alloc.lo libfes_la-fes2004_error.lo libfes_la-fes2004_extraction.lo libfes_la-fes2004_init.lo libfes_la-fes2004_io.lo libfes_la-fes2004_prediction.lo libfes_la-fes2004_kernel.lo ar: `u' modifier ignored since `D' is the default (see `U') make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/fes2004' Making all in wavewatch make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/wavewatch' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/wavewatch' Making all in culvert make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/culvert' /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libboyd87_la-boyd87.lo `test -f 'boyd87.c' || echo './'`boyd87.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from boyd87.c:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libboyd87.la libboyd87_la-boyd87.lo ar: `u' modifier ignored since `D' is the default (see `U') mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o check_inlet-check_inlet.o `test -f 'check_inlet.c' || echo './'`check_inlet.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from check_inlet.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_inlet check_inlet-check_inlet.o -lboyd87 -lm mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o check_outlet-check_outlet.o `test -f 'check_outlet.c' || echo './'`check_outlet.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from check_outlet.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o check_outlet check_outlet-check_outlet.o -lboyd87 -lm mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o discharge_table-discharge_table.o `test -f 'discharge_table.c' || echo './'`discharge_table.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from discharge_table.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o discharge_table discharge_table-discharge_table.o -lboyd87 -lm make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/culvert' make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules' /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulatecommon2D_la-particulatecommon.lo `test -f 'particulatecommon.c' || echo './'`particulatecommon.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from particulatecommon.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ particulatecommon.c: In function ‘compute_lift_force’: particulatecommon.c:33:10: warning: ‘*((void *)&result+16)’ may be used uninitialized in this function [-Wmaybe-uninitialized] return result; ^~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libparticulatecommon2D.la libparticulatecommon2D_la-particulatecommon.lo libtool: warning: '-version-info/-version-number' is ignored for convenience libraries libtool: warning: '-release' is ignored for convenience libraries ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulatecommon3D_la-particulatecommon.lo `test -f 'particulatecommon.c' || echo './'`particulatecommon.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from particulatecommon.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libparticulatecommon3D.la libparticulatecommon3D_la-particulatecommon.lo libtool: warning: '-version-info/-version-number' is ignored for convenience libraries libtool: warning: '-release' is ignored for convenience libraries ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libterrain2D_la-terrain.lo `test -f 'terrain.c' || echo './'`terrain.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from terrain.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libterrain2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libterrain2D_la-terrain.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lkdt -lkdt -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o terrain.lo terrain.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from terrain.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libterrain3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris terrain.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lkdt -lkdt -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulates2D_la-particulates.lo `test -f 'particulates.c' || echo './'`particulates.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/particle.h:27, from particulatecommon.h:20, from particulates.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libparticulates2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libparticulates2D_la-particulates.lo libparticulatecommon2D.la ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulates3D_la-particulates.lo `test -f 'particulates.c' || echo './'`particulates.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/particle.h:27, from particulatecommon.h:20, from particulates.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libparticulates3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libparticulates3D_la-particulates.lo libparticulatecommon3D.la ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libokada2D_la-okada.lo `test -f 'okada.c' || echo './'`okada.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/event.h:27, from okada.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libokada2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libokada2D_la-okada.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libokada3D_la-okada.lo `test -f 'okada.c' || echo './'`okada.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/event.h:27, from okada.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libokada3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libokada3D_la-okada.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libdf33D_la-df3.lo `test -f 'df3.c' || echo './'`df3.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from df3.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libdf33D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libdf33D_la-df3.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libelectrohydro2D_la-electrohydro.lo `test -f 'electrohydro.c' || echo './'`electrohydro.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from electrohydro.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libelectrohydro2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libelectrohydro2D_la-electrohydro.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libelectrohydro3D_la-electrohydro.lo `test -f 'electrohydro.c' || echo './'`electrohydro.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from electrohydro.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libelectrohydro3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libelectrohydro3D_la-electrohydro.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libskewsymmetric2D_la-skewsymmetric.lo `test -f 'skewsymmetric.c' || echo './'`skewsymmetric.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from skewsymmetric.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ skewsymmetric.c: In function ‘gfs_skew_symmetric_run’: skewsymmetric.c:591:23: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION]; ^~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libskewsymmetric2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libskewsymmetric2D_la-skewsymmetric.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libskewsymmetric3D_la-skewsymmetric.lo `test -f 'skewsymmetric.c' || echo './'`skewsymmetric.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from skewsymmetric.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ skewsymmetric.c: In function ‘gfs_skew_symmetric_run’: skewsymmetric.c:591:23: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION]; ^~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libskewsymmetric3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libskewsymmetric3D_la-skewsymmetric.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtopics2D_la-topics.lo `test -f 'topics.c' || echo './'`topics.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/solid.h:23, from topics.c:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from ../src/timestep.h:29:0, from ../src/simulation.h:28, from ../src/event.h:53, from ../src/solid.h:26, from topics.c:21: topics.c: In function ‘print_interface’: topics.c:1139:38: warning: array subscript is above array bounds [-Warray-bounds] double nz = GFS_VALUE(cell, tv->m[2]); ../src/variable.h:76:74: note: in definition of macro ‘GFS_VALUE’ #define GFS_VALUE(cell,v) ((&GFS_STATE (cell)->place_holder)[(v)->i]) ^ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libtopics2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libtopics2D_la-topics.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtopics3D_la-topics.lo `test -f 'topics.c' || echo './'`topics.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/solid.h:23, from topics.c:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libtopics3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libtopics3D_la-topics.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libculvert2D_la-culvert.lo `test -f 'culvert.c' || echo './'`culvert.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/source.h:27, from ../src/river.h:27, from culvert.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libculvert2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libculvert2D_la-culvert.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lculvert -lboyd87 -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o liblayered2D_la-layered.lo `test -f 'layered.c' || echo './'`layered.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from layered.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o liblayered2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris liblayered2D_la-layered.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtide2D_la-tide.lo `test -f 'tide.c' || echo './'`tide.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/string.h:26, from tide.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libtide2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libtide2D_la-tide.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lfes2004 -lfes -lnetcdf -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtide3D_la-tide.lo `test -f 'tide.c' || echo './'`tide.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/string.h:26, from tide.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libtide3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libtide3D_la-tide.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lfes2004 -lfes -lnetcdf -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libstokes2D_la-stokes.lo `test -f 'stokes.c' || echo './'`stokes.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from stokes.c:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -c -o CW263.lo CW263.f /bin/bash ../libtool --silent --tag=F77 --mode=link f77 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libstokes2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libstokes2D_la-stokes.lo CW263.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libstokes3D_la-stokes.lo `test -f 'stokes.c' || echo './'`stokes.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from stokes.c:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=F77 --mode=link f77 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libstokes3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libstokes3D_la-stokes.lo CW263.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libbubbles2D_la-bubbles.lo `test -f 'bubbles.c' || echo './'`bubbles.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/particle.h:27, from particulatecommon.h:20, from bubbles.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ bubbles.c: In function ‘bubble_fraction_init’: bubbles.c:421:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] GFS_PARTICULATE_FIELD (v)->voidfraction_func = voidfraction_from_bubbles; ^ bubbles.c: In function ‘bubble_fraction_dt_init’: bubbles.c:474:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] GFS_PARTICULATE_FIELD (o)->voidfraction_func = dVpdt_from_particles; ^ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libbubbles2D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libbubbles2D_la-bubbles.lo libparticulatecommon2D.la ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libbubbles3D_la-bubbles.lo `test -f 'bubbles.c' || echo './'`bubbles.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/particle.h:27, from particulatecommon.h:20, from bubbles.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ bubbles.c: In function ‘bubble_fraction_init’: bubbles.c:421:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] GFS_PARTICULATE_FIELD (v)->voidfraction_func = voidfraction_from_bubbles; ^ bubbles.c: In function ‘bubble_fraction_dt_init’: bubbles.c:474:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] GFS_PARTICULATE_FIELD (o)->voidfraction_func = dVpdt_from_particles; ^ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libbubbles3D.la -rpath /usr/lib/x86_64-linux-gnu/gerris libbubbles3D_la-bubbles.lo libparticulatecommon3D.la ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm ar: `u' modifier ignored since `D' is the default (see `U') mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o rsurface2kdt-rsurface2kdt.o `test -f 'rsurface2kdt.c' || echo './'`rsurface2kdt.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from rsurface2kdt.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/x86_64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o rsurface2kdt-rsurface.o `test -f 'rsurface.c' || echo './'`rsurface.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from rsurface.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o rsurface2kdt rsurface2kdt-rsurface2kdt.o rsurface2kdt-rsurface.o -LRStarTree -lcSmRST -Lkdt -lkdt -lm libtool: warning: '-version-info' is ignored for programs libtool: warning: '-release' is ignored for programs make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/modules' Making all in tools make[3]: Entering directory '/<>/gerris-20131206+dfsg/tools' mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfs2oogl2D-gfs2oogl.o `test -f 'gfs2oogl.c' || echo './'`gfs2oogl.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from gfs2oogl.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gfs2oogl.c: In function ‘main’: gfs2oogl.c:891:7: warning: ‘g_basename’ is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations] streamname = g_strdup (g_basename (optarg)); ^~~~~~~~~~ In file included from /usr/include/glib-2.0/glib.h:48:0, from /usr/include/gts.h:24, from ../src/init.h:23, from gfs2oogl.c:31: /usr/include/glib-2.0/glib/gfileutils.h:163:14: note: declared here const gchar *g_basename (const gchar *file_name); ^~~~~~~~~~ gfs2oogl.c:706:28: warning: variable ‘lines’ set but not used [-Wunused-but-set-variable] gboolean ribbon = FALSE, lines = FALSE, squares = FALSE; ^~~~~ gfs2oogl.c:706:12: warning: variable ‘ribbon’ set but not used [-Wunused-but-set-variable] gboolean ribbon = FALSE, lines = FALSE, squares = FALSE; ^~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gfs2oogl2D gfs2oogl2D-gfs2oogl.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfs2oogl.o gfs2oogl.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from gfs2oogl.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gfs2oogl.c: In function ‘main’: gfs2oogl.c:891:7: warning: ‘g_basename’ is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations] streamname = g_strdup (g_basename (optarg)); ^~~~~~~~~~ In file included from /usr/include/glib-2.0/glib.h:48:0, from /usr/include/gts.h:24, from ../src/init.h:23, from gfs2oogl.c:31: /usr/include/glib-2.0/glib/gfileutils.h:163:14: note: declared here const gchar *g_basename (const gchar *file_name); ^~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gfs2oogl3D gfs2oogl.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o streamanime.o streamanime.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from streamanime.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o streamanime streamanime.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ppmcombine-ppmcombine.o `test -f 'ppmcombine.c' || echo './'`ppmcombine.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from ppmcombine.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ppmcombine.c: In function ‘main’: ppmcombine.c:36:12: warning: variable ‘verbose’ set but not used [-Wunused-but-set-variable] gboolean verbose = FALSE; ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o ppmcombine ppmcombine-ppmcombine.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscompare2D-gfscompare.o `test -f 'gfscompare.c' || echo './'`gfscompare.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from gfscompare.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gfscompare.c: In function ‘main’: gfscompare.c:319:12: warning: variable ‘no_check’ set but not used [-Wunused-but-set-variable] gboolean no_check = FALSE; ^~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gfscompare2D gfscompare2D-gfscompare.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscompare.o gfscompare.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from gfscompare.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gfscompare.c: In function ‘main’: gfscompare.c:319:12: warning: variable ‘no_check’ set but not used [-Wunused-but-set-variable] gboolean no_check = FALSE; ^~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gfscompare3D gfscompare.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscombine2D-gfscombine.o `test -f 'gfscombine.c' || echo './'`gfscombine.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from gfscombine.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gfscombine2D gfscombine2D-gfscombine.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscombine.o gfscombine.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from gfscombine.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gfscombine3D gfscombine.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfsjoin2D-gfsjoin2.o `test -f 'gfsjoin2.c' || echo './'`gfsjoin2.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from gfsjoin2.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gfsjoin2D gfsjoin2D-gfsjoin2.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfsjoin2.o gfsjoin2.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from gfsjoin2.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o gfsjoin3D gfsjoin2.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o shapes.o shapes.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from shapes.c:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ shapes.c:288:13: warning: ‘surface_add_rectangular_channel_shape’ defined but not used [-Wunused-function] static void surface_add_rectangular_channel_shape (GtsSurface * s, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o shapes shapes.o -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 make[3]: Leaving directory '/<>/gerris-20131206+dfsg/tools' Making all in test make[3]: Entering directory '/<>/gerris-20131206+dfsg/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/gerris-20131206+dfsg/test' Making all in doc make[3]: Entering directory '/<>/gerris-20131206+dfsg/doc' ls ../src/*.[ch] | awk 'BEGIN{print "reference: \\"}{ print "\t" $1 " \\"}' > Makefile.deps Making all in tutorial make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/tutorial' awk -f depend.awk file="tutorial" < tutorial.tex > Makefile.deps make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/tutorial' Making all in examples make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o classes-classes.o `test -f 'classes.c' || echo './'`classes.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/string.h:26, from classes.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o classes-init.o `test -f '../../src/init.c' || echo './'`../../src/init.c ../../src/init.c:33:0: warning: "_GNU_SOURCE" redefined # define _GNU_SOURCE :0:0: note: this is the location of the previous definition In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/fenv.h:26, from ../../src/init.c:34: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ../../src/init.c: In function ‘gfs_init’: ../../src/init.c:416:5: warning: ‘MPI_Errhandler_set’ is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL); ^~~~~~~~~~~~~~~~~~ In file included from ../../src/utils.h:34:0, from ../../src/boundary.h:24, from ../../src/init.c:49: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1353:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o classes classes-classes.o classes-init.o ../../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o modules-modules.o `test -f 'modules.c' || echo './'`modules.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/7/include-fixed/limits.h:34, from /usr/lib/x86_64-linux-gnu/glib-2.0/include/glibconfig.h:11, from /usr/include/glib-2.0/glib/gtypes.h:32, from /usr/include/glib-2.0/glib/galloca.h:32, from /usr/include/glib-2.0/glib.h:30, from /usr/include/glib-2.0/gmodule.h:28, from modules.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o modules modules-modules.o ../../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ./modules ../../modules/*.la /usr/lib/x86_64-linux-gnu/gerris/*.so | LC_ALL=C sort | uniq > modules.list (./classes && sh ./modulesyms.sh ../../modules /usr/lib/x86_64-linux-gnu/gerris) | LC_ALL=C sort > gerris.dic echo "# Language file for source-highlight" > gfs.lang echo "# Generated automatically by classes.c" >> gfs.lang awk '{ printf ("classname = \"%s\"\n", $1) }' < gerris.dic >> gfs.lang echo "include \"/usr/share/source-highlight/cpp.lang\"" >> gfs.lang echo "comment start \"#\"" >> gfs.lang echo "redef preproc = \"C preprocessor command is not compatible with the use of # as comment character in GTS\"" >> gfs.lang echo "(defvar gfs-abbrevs '(" > gfs-keywords.el awk '{ printf ("\"%s\"\n", $1) }' < gerris.dic >> gfs-keywords.el echo ")" >> gfs-keywords.el echo "\"Gerris keywords automatically generated by classes.c.\")" >> gfs-keywords.el echo "(defvar gfs-modules '(" >> gfs-keywords.el awk '{ printf ("\"%s\"\n", $1) }' < modules.list >> gfs-keywords.el echo ")" >> gfs-keywords.el echo "\"Gerris modules automatically generated by modules.c.\")" >> gfs-keywords.el echo "(provide 'gfs-keywords)" >> gfs-keywords.el sh ./gfs.php.sh > gfs.php make all-am make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' Making all in manpages make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/manpages' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/manpages' make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc' mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o autoclass-autoclass.o `test -f 'autoclass.c' || echo './'`autoclass.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/string.h:26, from autoclass.c:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ autoclass.c: In function ‘main’: autoclass.c:6:21: warning: variable ‘klass’ set but not used [-Wunused-but-set-variable] GtsObjectClass ** klass; ^~~~~ mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o autoclass-init.o `test -f '../src/init.c' || echo './'`../src/init.c ../src/init.c:33:0: warning: "_GNU_SOURCE" redefined # define _GNU_SOURCE :0:0: note: this is the location of the previous definition In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33:0, from /usr/include/fenv.h:26, from ../src/init.c:34: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ../src/init.c: In function ‘gfs_init’: ../src/init.c:416:5: warning: ‘MPI_Errhandler_set’ is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL); ^~~~~~~~~~~~~~~~~~ In file included from ../src/utils.h:34:0, from ../src/boundary.h:24, from ../src/init.c:49: /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1353:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o autoclass autoclass-autoclass.o autoclass-init.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/doc' Making all in desktop make[3]: Entering directory '/<>/gerris-20131206+dfsg/desktop' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/gerris-20131206+dfsg/desktop' Making all in debian make[3]: Entering directory '/<>/gerris-20131206+dfsg/debian' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/gerris-20131206+dfsg/debian' make[3]: Entering directory '/<>/gerris-20131206+dfsg' make[3]: Leaving directory '/<>/gerris-20131206+dfsg' make[2]: Leaving directory '/<>/gerris-20131206+dfsg' make[1]: Leaving directory '/<>/gerris-20131206+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/<>/gerris-20131206+dfsg' dh_auto_install make -j1 install DESTDIR=/<>/gerris-20131206\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>/gerris-20131206+dfsg' Making install in src make[3]: Entering directory '/<>/gerris-20131206+dfsg/src' make install-am make[4]: Entering directory '/<>/gerris-20131206+dfsg/src' make[5]: Entering directory '/<>/gerris-20131206+dfsg/src' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c libgfs2D.la libgfs3D.la '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c gerris2D gerris3D '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 gfs.h '/<>/gerris-20131206+dfsg/debian/tmp/usr/include' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 gerris2D.pc gerris3D.pc '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' /usr/bin/install -c -m 644 m4.awk '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/include/gerris' /usr/bin/install -c -m 644 ftt.h fluid.h variable.h output.h solid.h poisson.h advection.h boundary.h mpi_boundary.h timestep.h domain.h init.h refine.h event.h simulation.h graphic.h adaptive.h source.h tension.h vof.h utils.h ocean.h wave.h levelset.h isocube.h cartesian.h surface.h unstructured.h map.h river.h moving.h balance.h metric.h particle.h version.h spatial.h function.h '/<>/gerris-20131206+dfsg/debian/tmp/usr/include/gerris' make[5]: Leaving directory '/<>/gerris-20131206+dfsg/src' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/src' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/src' Making install in modules make[3]: Entering directory '/<>/gerris-20131206+dfsg/modules' Making install in RStarTree make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/RStarTree' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/RStarTree' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/RStarTree' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/RStarTree' Making install in kdt make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/kdt' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/kdt' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/bash ../../libtool --silent --mode=install /usr/bin/install -c xyz2kdt kdt2kdt kdtquery '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/kdt' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/kdt' Making install in fes2004 make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/fes2004' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/fes2004' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/fes2004' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/fes2004' Making install in wavewatch make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/wavewatch' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/wavewatch' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/wavewatch' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/wavewatch' Making install in culvert make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/culvert' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/culvert' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/culvert' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/culvert' make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c rsurface2kdt '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/gerris' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c libterrain2D.la libterrain3D.la libparticulates2D.la libparticulates3D.la libokada2D.la libokada3D.la libdf33D.la libelectrohydro2D.la libelectrohydro3D.la libskewsymmetric2D.la libskewsymmetric3D.la libtopics2D.la libtopics3D.la libculvert2D.la liblayered2D.la libtide2D.la libtide3D.la libstokes2D.la libstokes3D.la libbubbles2D.la libbubbles3D.la '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/gerris' libtool: warning: relinking 'libterrain2D.la' libtool: warning: relinking 'libterrain3D.la' libtool: warning: relinking 'libparticulates2D.la' libtool: warning: relinking 'libparticulates3D.la' libtool: warning: relinking 'libokada2D.la' libtool: warning: relinking 'libokada3D.la' libtool: warning: relinking 'libdf33D.la' libtool: warning: relinking 'libelectrohydro2D.la' libtool: warning: relinking 'libelectrohydro3D.la' libtool: warning: relinking 'libskewsymmetric2D.la' libtool: warning: relinking 'libskewsymmetric3D.la' libtool: warning: relinking 'libtopics2D.la' libtool: warning: relinking 'libtopics3D.la' libtool: warning: relinking 'libculvert2D.la' libtool: warning: relinking 'liblayered2D.la' libtool: warning: relinking 'libtide2D.la' libtool: warning: relinking 'libtide3D.la' libtool: warning: relinking 'libstokes2D.la' libtool: warning: relinking 'libstokes3D.la' libtool: warning: relinking 'libbubbles2D.la' libtool: warning: relinking 'libbubbles3D.la' libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu/gerris' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/modules' Making install in tools make[3]: Entering directory '/<>/gerris-20131206+dfsg/tools' make[4]: Entering directory '/<>/gerris-20131206+dfsg/tools' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c gfs2oogl2D gfs2oogl3D streamanime ppmcombine gfscompare2D gfscompare3D gfscombine2D gfscombine3D gfsjoin2D gfsjoin3D shapes '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /usr/bin/install -c darcs2dist bat2gts ppm2mpeg ppm2theora ppm2video gfs2gfs gfsjoin gfsplot '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/tools' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/tools' Making install in test make[3]: Entering directory '/<>/gerris-20131206+dfsg/test' make[4]: Entering directory '/<>/gerris-20131206+dfsg/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/test' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/test' Making install in doc make[3]: Entering directory '/<>/gerris-20131206+dfsg/doc' Making install in tutorial make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/tutorial' make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc/tutorial' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc/tutorial' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/tutorial' Making install in examples make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' make install-am make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' make[6]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /usr/bin/install -c gfs2doc gfs-highlight gfsxref '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' /usr/bin/install -c -m 644 gfs2tex.py gfs.lang gerris.dic gfs-keywords.el gfs-mode.el gfs.sty gfs.hva kaltura.sh gfs.php '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' make[6]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' Making install in manpages make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/manpages' make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc/manpages' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 bat2gts.1 gerris2D.1 gerris3D.1 gfs2gfs.1 gfs2oogl2D.1 gfs2oogl3D.1 gfscompare2D.1 gfscompare3D.1 gfs-config.1 gfs-highlight.1 gfsjoin.1 gfsxref.1 ppm2mpeg.1 ppmcombine.1 rsurfacequery.1 rsurfaceinfo.1 shapes.1 streamanime.1 xyz2rsurface.1 gfsjoin2D.1 gfsjoin3D.1 '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/man/man1' make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc/manpages' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/manpages' make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc' make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/doc' Making install in desktop make[3]: Entering directory '/<>/gerris-20131206+dfsg/desktop' make[4]: Entering directory '/<>/gerris-20131206+dfsg/desktop' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/icons/hicolor/48x48/mimetypes' /usr/bin/install -c -m 644 application-gerris.png application-gerris-2D.png application-gerris-3D.png application-gerris-compressed.png '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/icons/hicolor/48x48/mimetypes' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/mime/packages' /usr/bin/install -c -m 644 gerris.xml '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/mime/packages' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/desktop' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/desktop' Making install in debian make[3]: Entering directory '/<>/gerris-20131206+dfsg/debian' make[4]: Entering directory '/<>/gerris-20131206+dfsg/debian' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/debian' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/debian' make[3]: Entering directory '/<>/gerris-20131206+dfsg' make[4]: Entering directory '/<>/gerris-20131206+dfsg' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' /usr/bin/install -c build_function libtool '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' make[4]: Leaving directory '/<>/gerris-20131206+dfsg' make[3]: Leaving directory '/<>/gerris-20131206+dfsg' make[2]: Leaving directory '/<>/gerris-20131206+dfsg' find /<>/gerris-20131206+dfsg/debian/ -name "*.la" | xargs rm -f sed -i -e "s/mpicc/gcc/g" /<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris/build_function rm -rf /<>/gerris-20131206+dfsg/debian/tmp/usr/bin/darcs2dist rm -rf /<>/gerris-20131206+dfsg/debian/tmp/usr/bin/gfs2doc make[1]: Leaving directory '/<>/gerris-20131206+dfsg' dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/gerris-20131206+dfsg' dh_installchangelogs ChangeLog make[1]: Leaving directory '/<>/gerris-20131206+dfsg' dh_installman dh_lintian dh_icons dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libgfs-dev: unknown substitution variable ${shlibs:Depends} dh_md5sums dh_builddeb INFO: pkgstriptranslations version 138 pkgstriptranslations: processing gerris (in debian/gerris); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gerris/DEBIAN/control, package gerris, directory debian/gerris .. removing usr/share/doc/gerris/changelog.gz Searching for duplicated docs in dependency libgfs-1.3-2... symlinking changelog.Debian.gz in gerris to file in libgfs-1.3-2 pkgstripfiles: Running PNG optimization (using 1 cpus) for package gerris ... oooo pkgstripfiles: PNG optimization (4/0) for package gerris took 1 s dpkg-deb: building package 'gerris' in '../gerris_20131206+dfsg-18build1_amd64.deb'. INFO: pkgstriptranslations version 138 pkgstriptranslations: processing gerris-dbgsym (in debian/.debhelper/gerris/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/gerris/dbgsym-root/DEBIAN/control, package gerris-dbgsym, directory debian/.debhelper/gerris/dbgsym-root pkgstripfiles: Running PNG optimization (using 1 cpus) for package gerris-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'gerris-dbgsym' in 'debian/.debhelper/scratch-space/build-gerris/gerris-dbgsym_20131206+dfsg-18build1_amd64.deb'. Renaming gerris-dbgsym_20131206+dfsg-18build1_amd64.deb to gerris-dbgsym_20131206+dfsg-18build1_amd64.ddeb INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libgfs-1.3-2 (in debian/libgfs-1.3-2); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libgfs-1.3-2/DEBIAN/control, package libgfs-1.3-2, directory debian/libgfs-1.3-2 .. removing usr/share/doc/libgfs-1.3-2/changelog.gz pkgstripfiles: Truncating usr/share/doc/libgfs-1.3-2/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 1 cpus) for package libgfs-1.3-2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgfs-1.3-2' in '../libgfs-1.3-2_20131206+dfsg-18build1_amd64.deb'. INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libgfs-1.3-2-dbgsym (in debian/.debhelper/libgfs-1.3-2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libgfs-1.3-2/dbgsym-root/DEBIAN/control, package libgfs-1.3-2-dbgsym, directory debian/.debhelper/libgfs-1.3-2/dbgsym-root pkgstripfiles: Running PNG optimization (using 1 cpus) for package libgfs-1.3-2-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgfs-1.3-2-dbgsym' in 'debian/.debhelper/scratch-space/build-libgfs-1.3-2/libgfs-1.3-2-dbgsym_20131206+dfsg-18build1_amd64.deb'. Renaming libgfs-1.3-2-dbgsym_20131206+dfsg-18build1_amd64.deb to libgfs-1.3-2-dbgsym_20131206+dfsg-18build1_amd64.ddeb INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libgfs-dev (in debian/libgfs-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libgfs-dev/DEBIAN/control, package libgfs-dev, directory debian/libgfs-dev .. removing usr/share/doc/libgfs-dev/changelog.gz Searching for duplicated docs in dependency libgfs-1.3-2... symlinking changelog.Debian.gz in libgfs-dev to file in libgfs-1.3-2 pkgstripfiles: Running PNG optimization (using 1 cpus) for package libgfs-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgfs-dev' in '../libgfs-dev_20131206+dfsg-18build1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../gerris_20131206+dfsg-18build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build gerris-20131206+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180513-1728 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ gerris_20131206+dfsg-18build1_amd64.changes: -------------------------------------------- Format: 1.8 Date: Sun, 13 May 2018 17:00:12 +0000 Source: gerris Binary: gerris libgfs-1.3-2 libgfs-dev Architecture: amd64 Version: 20131206+dfsg-18build1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: gerris - Fluid Flow Solver libgfs-1.3-2 - Fluid Flow Solver -- shared libraries libgfs-dev - Fluid Flow Solver -- development libraries and headers Changes: gerris (20131206+dfsg-18build1) cosmic; urgency=medium . * No-change rebuild for dune openmpi soname change. Checksums-Sha1: 7206199f4524ef94f5ecf467afd6cc1f63e4b4d9 418396 gerris-dbgsym_20131206+dfsg-18build1_amd64.ddeb fe3b90e5eeda14ae359fb6d5dffba9b8b93c9862 10192 gerris_20131206+dfsg-18build1_amd64.buildinfo 5e7f879c6cdd7dc1a832794a7e3451255f11ee9d 221680 gerris_20131206+dfsg-18build1_amd64.deb cd953f5e7e3a7e6afee7a214e1dd7ee7ae0828d9 2047796 libgfs-1.3-2-dbgsym_20131206+dfsg-18build1_amd64.ddeb df3dcfdcefa42db3202624933cdd1e946a6d5412 482832 libgfs-1.3-2_20131206+dfsg-18build1_amd64.deb 81ef0780cde22f4d4ced50566137dbe9ed35dc95 31688 libgfs-dev_20131206+dfsg-18build1_amd64.deb Checksums-Sha256: ed210719139f9170ae4320d4d896f65b57e0bbdb164af342dc44f3f60e5a9e0d 418396 gerris-dbgsym_20131206+dfsg-18build1_amd64.ddeb 0ef78a4cca177484e8b4be8cebb9648d0d6018489b724be1c6ee4a51ae105b02 10192 gerris_20131206+dfsg-18build1_amd64.buildinfo bd75f32aa46011189e3fdc7461d7f973d3bca2b3582241a4fa6787422910bda4 221680 gerris_20131206+dfsg-18build1_amd64.deb c5ec32ece228b0f4b1b2c700dae44eac8833e27588f3831ae80517bbaee5fc3b 2047796 libgfs-1.3-2-dbgsym_20131206+dfsg-18build1_amd64.ddeb ccceff2f4550970591cabe8b93de9073ed145e5dc61de696e23457f2b6212d1c 482832 libgfs-1.3-2_20131206+dfsg-18build1_amd64.deb a0fa2c061e8c2c9197f77154b6e9e6cf7c9be7b65c64f0bf80aefd19a26da52f 31688 libgfs-dev_20131206+dfsg-18build1_amd64.deb Files: df985556ec689b222e0478f8426cdc07 418396 debug optional gerris-dbgsym_20131206+dfsg-18build1_amd64.ddeb bf8d1d107864ecd14304f7eba28e98a2 10192 science optional gerris_20131206+dfsg-18build1_amd64.buildinfo a27b11893c52928506bebea63cc5c1f2 221680 science optional gerris_20131206+dfsg-18build1_amd64.deb 4b4be421051edd5bf9923e38d0c5adf2 2047796 debug optional libgfs-1.3-2-dbgsym_20131206+dfsg-18build1_amd64.ddeb b604fa2cca89c747c75e903026510a72 482832 devel optional libgfs-1.3-2_20131206+dfsg-18build1_amd64.deb e0c0fdc372a5ebb3df28c88249942628 31688 libdevel optional libgfs-dev_20131206+dfsg-18build1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ gerris_20131206+dfsg-18build1_amd64.deb --------------------------------------- new debian package, version 2.0. size 221680 bytes: control archive=2980 bytes. 1346 bytes, 32 lines control 4379 bytes, 69 lines md5sums 50 bytes, 2 lines shlibs 74 bytes, 2 lines triggers Package: gerris Version: 20131206+dfsg-18build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 1134 Depends: gcc, libc6 (>= 2.27), libgfortran4 (>= 7), libgfs-1.3-2, libglib2.0-0 (>= 2.12.0), libgts-0.7-5 (>= 0.7.6), libopenmpi3 Recommends: gfsview Suggests: python Breaks: gerris-mpi (<< 20131206+dfsg-7) Replaces: gerris-mpi (<< 20131206+dfsg-7) Section: science Priority: optional Homepage: http://gfs.sourceforge.net/ Description: Fluid Flow Solver Gerris is a system for the solution of the partial differential equations describing fluid flow. . A brief summary of its main (current) features: . * Solves the time-dependent incompressible variable-density Euler, Stokes or Navier-Stokes equations * Adaptive mesh refinement: the resolution is adapted dynamically to the features of the flow * Entirely automatic mesh generation in complex geometries * Second-order in space and time * Unlimited number of advected/diffused passive tracers * Flexible specification of additional source terms * Portable parallel support using the MPI library * Volume of Fluid advection scheme for interfacial flows . This package has MPI support built in. drwxr-xr-x root/root 0 2018-05-13 17:00 ./ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/bin/ -rwxr-xr-x root/root 3218 2018-05-13 17:00 ./usr/bin/bat2gts -rwxr-xr-x root/root 23016 2018-05-13 17:00 ./usr/bin/gerris2D -rwxr-xr-x root/root 23016 2018-05-13 17:00 ./usr/bin/gerris3D -rwxr-xr-x root/root 1967 2018-05-13 17:00 ./usr/bin/gfs-highlight -rwxr-xr-x root/root 551 2018-05-13 17:00 ./usr/bin/gfs2gfs -rwxr-xr-x root/root 35720 2018-05-13 17:00 ./usr/bin/gfs2oogl2D -rwxr-xr-x root/root 35720 2018-05-13 17:00 ./usr/bin/gfs2oogl3D -rwxr-xr-x root/root 14440 2018-05-13 17:00 ./usr/bin/gfscombine2D -rwxr-xr-x root/root 14440 2018-05-13 17:00 ./usr/bin/gfscombine3D -rwxr-xr-x root/root 27304 2018-05-13 17:00 ./usr/bin/gfscompare2D -rwxr-xr-x root/root 23144 2018-05-13 17:00 ./usr/bin/gfscompare3D -rwxr-xr-x root/root 5034 2018-05-13 17:00 ./usr/bin/gfsjoin -rwxr-xr-x root/root 10376 2018-05-13 17:00 ./usr/bin/gfsjoin2D -rwxr-xr-x root/root 10376 2018-05-13 17:00 ./usr/bin/gfsjoin3D -rwxr-xr-x root/root 1264 2018-05-13 17:00 ./usr/bin/gfsplot -rwxr-xr-x root/root 1732 2018-05-13 17:00 ./usr/bin/gfsxref -rwxr-xr-x root/root 26760 2018-05-13 17:00 ./usr/bin/kdt2kdt -rwxr-xr-x root/root 22520 2018-05-13 17:00 ./usr/bin/kdtquery -rwxr-xr-x root/root 506 2018-05-13 17:00 ./usr/bin/ppm2mpeg -rwxr-xr-x root/root 505 2018-05-13 17:00 ./usr/bin/ppm2theora -rwxr-xr-x root/root 468 2018-05-13 17:00 ./usr/bin/ppm2video -rwxr-xr-x root/root 10344 2018-05-13 17:00 ./usr/bin/ppmcombine -rwxr-xr-x root/root 75912 2018-05-13 17:00 ./usr/bin/rsurface2kdt -rwxr-xr-x root/root 18696 2018-05-13 17:00 ./usr/bin/shapes -rwxr-xr-x root/root 10344 2018-05-13 17:00 ./usr/bin/streamanime -rwxr-xr-x root/root 26760 2018-05-13 17:00 ./usr/bin/xyz2kdt drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/gerris/ lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/gerris/gfs2tex.py -> ../../share/gerris/gfs2tex.py lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/gerris/m4.awk -> ../../share/gerris/m4.awk drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/ lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/libstokes2D-1.3.so.2 -> libstokes2D-1.3.so.2.0.0 -rw-r--r-- root/root 34656 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/libstokes2D-1.3.so.2.0.0 -rw-r--r-- root/root 44688 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/libstokes2D.a lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/libstokes2D.so -> libstokes2D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/libstokes3D-1.3.so.2 -> libstokes3D-1.3.so.2.0.0 -rw-r--r-- root/root 34656 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/libstokes3D-1.3.so.2.0.0 -rw-r--r-- root/root 44688 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/libstokes3D.a lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/gerris/libstokes3D.so -> libstokes3D-1.3.so.2.0.0 drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/doc/gerris/ -rw-r--r-- root/root 930 2013-12-06 15:51 ./usr/share/doc/gerris/AUTHORS -rw-r--r-- root/root 4362 2013-12-06 15:51 ./usr/share/doc/gerris/NEWS.gz -rw-r--r-- root/root 665 2013-12-06 15:51 ./usr/share/doc/gerris/README -rw-r--r-- root/root 277 2013-12-06 15:51 ./usr/share/doc/gerris/THANKS -rw-r--r-- root/root 1405 2013-12-06 15:51 ./usr/share/doc/gerris/TODO lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/share/doc/gerris/changelog.Debian.gz -> ../libgfs-1.3-2/changelog.Debian.gz -rw-r--r-- root/root 1933 2016-09-26 18:35 ./usr/share/doc/gerris/copyright drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/gerris/ -rwxr-xr-x root/root 851 2018-05-13 17:00 ./usr/share/gerris/build_function -rw-r--r-- root/root 5521 2018-05-13 17:00 ./usr/share/gerris/gerris.dic -rw-r--r-- root/root 6565 2018-05-13 17:00 ./usr/share/gerris/gfs-keywords.el -rw-r--r-- root/root 4732 2018-05-13 17:00 ./usr/share/gerris/gfs-mode.el -rw-r--r-- root/root 545 2018-05-13 17:00 ./usr/share/gerris/gfs.hva -rw-r--r-- root/root 10891 2018-05-13 17:00 ./usr/share/gerris/gfs.lang -rw-r--r-- root/root 10685 2018-05-13 17:00 ./usr/share/gerris/gfs.php -rw-r--r-- root/root 210 2018-05-13 17:00 ./usr/share/gerris/gfs.sty -rw-r--r-- root/root 7148 2018-05-13 17:00 ./usr/share/gerris/gfs2tex.py -rw-r--r-- root/root 387 2018-05-13 17:00 ./usr/share/gerris/kaltura.sh -rwxr-xr-x root/root 354753 2018-05-13 17:00 ./usr/share/gerris/libtool -rw-r--r-- root/root 934 2018-05-13 17:00 ./usr/share/gerris/m4.awk drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/icons/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/icons/hicolor/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/icons/hicolor/48x48/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/icons/hicolor/48x48/mimetypes/ -rw-r--r-- root/root 3360 2018-05-13 17:00 ./usr/share/icons/hicolor/48x48/mimetypes/application-gerris-2D.png -rw-r--r-- root/root 3362 2018-05-13 17:00 ./usr/share/icons/hicolor/48x48/mimetypes/application-gerris-3D.png -rw-r--r-- root/root 3465 2018-05-13 17:00 ./usr/share/icons/hicolor/48x48/mimetypes/application-gerris-compressed.png -rw-r--r-- root/root 3350 2018-05-13 17:00 ./usr/share/icons/hicolor/48x48/mimetypes/application-gerris.png drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/man/man1/ -rw-r--r-- root/root 665 2018-05-13 17:00 ./usr/share/man/man1/bat2gts.1.gz -rw-r--r-- root/root 747 2018-05-13 17:00 ./usr/share/man/man1/gerris2D.1.gz lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/share/man/man1/gerris3D.1.gz -> gerris2D.1.gz -rw-r--r-- root/root 447 2018-05-13 17:00 ./usr/share/man/man1/gfs-config.1.gz -rw-r--r-- root/root 499 2018-05-13 17:00 ./usr/share/man/man1/gfs-highlight.1.gz -rw-r--r-- root/root 446 2018-05-13 17:00 ./usr/share/man/man1/gfs2gfs.1.gz -rw-r--r-- root/root 1174 2018-05-13 17:00 ./usr/share/man/man1/gfs2oogl2D.1.gz lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/share/man/man1/gfs2oogl3D.1.gz -> gfs2oogl2D.1.gz -rw-r--r-- root/root 1008 2018-05-13 17:00 ./usr/share/man/man1/gfscompare2D.1.gz lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/share/man/man1/gfscompare3D.1.gz -> gfscompare2D.1.gz -rw-r--r-- root/root 383 2018-05-13 17:00 ./usr/share/man/man1/gfsjoin.1.gz -rw-r--r-- root/root 433 2018-05-13 17:00 ./usr/share/man/man1/gfsjoin2D.1.gz -rw-r--r-- root/root 433 2018-05-13 17:00 ./usr/share/man/man1/gfsjoin3D.1.gz -rw-r--r-- root/root 466 2018-05-13 17:00 ./usr/share/man/man1/gfsxref.1.gz lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/share/man/man1/ppm2mpeg.1.gz -> gerris2D.1.gz -rw-r--r-- root/root 488 2018-05-13 17:00 ./usr/share/man/man1/ppmcombine.1.gz -rw-r--r-- root/root 398 2018-05-13 17:00 ./usr/share/man/man1/rsurfaceinfo.1.gz -rw-r--r-- root/root 332 2018-05-13 17:00 ./usr/share/man/man1/rsurfacequery.1.gz -rw-r--r-- root/root 660 2018-05-13 17:00 ./usr/share/man/man1/shapes.1.gz lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/share/man/man1/streamanime.1.gz -> gerris2D.1.gz -rw-r--r-- root/root 554 2018-05-13 17:00 ./usr/share/man/man1/xyz2rsurface.1.gz drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/mime/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/mime/packages/ -rw-r--r-- root/root 1048 2018-05-13 17:00 ./usr/share/mime/packages/gerris.xml libgfs-1.3-2_20131206+dfsg-18build1_amd64.deb --------------------------------------------- new debian package, version 2.0. size 482832 bytes: control archive=1020 bytes. 800 bytes, 20 lines control 389 bytes, 5 lines md5sums 56 bytes, 2 lines shlibs 74 bytes, 2 lines triggers Package: libgfs-1.3-2 Source: gerris Version: 20131206+dfsg-18build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 1789 Depends: libc6 (>= 2.14), libglib2.0-0 (>= 2.30.0), libgts-0.7-5 (>= 0.7.6+darcs121130), libopenmpi3 Breaks: libgfs-mpi-1.3-2 (<< 20131206+dfsg-7) Replaces: libgfs-mpi-1.3-2 (<< 20131206+dfsg-7) Section: devel Priority: optional Homepage: http://gfs.sourceforge.net/ Description: Fluid Flow Solver -- shared libraries Gerris is a system for the solution of the partial differential equations describing fluid flow. . This package contains the shared libraries for libgfs. . This package has MPI support built in. drwxr-xr-x root/root 0 2018-05-13 17:00 ./ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/libgfs2D-1.3.so.2 -> libgfs2D-1.3.so.2.0.0 -rw-r--r-- root/root 847232 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/libgfs2D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/libgfs3D-1.3.so.2 -> libgfs3D-1.3.so.2.0.0 -rw-r--r-- root/root 894352 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/libgfs3D-1.3.so.2.0.0 drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/doc/libgfs-1.3-2/ -rw-r--r-- root/root 907 2018-05-13 17:00 ./usr/share/doc/libgfs-1.3-2/changelog.Debian.gz -rw-r--r-- root/root 1933 2016-09-26 18:35 ./usr/share/doc/libgfs-1.3-2/copyright drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 48 2011-04-06 06:12 ./usr/share/lintian/overrides/libgfs-1.3-2 libgfs-dev_20131206+dfsg-18build1_amd64.deb ------------------------------------------- new debian package, version 2.0. size 31688 bytes: control archive=1836 bytes. 830 bytes, 21 lines control 2602 bytes, 41 lines md5sums Package: libgfs-dev Source: gerris Version: 20131206+dfsg-18build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 318 Depends: libgfs-1.3-2 (= 20131206+dfsg-18build1), libgts-dev, ffmpeg Breaks: libgfs-mpi-dev (<< 20131206+dfsg-7) Replaces: libgfs-mpi-dev (<< 20131206+dfsg-7) Section: libdevel Priority: optional Homepage: http://gfs.sourceforge.net/ Description: Fluid Flow Solver -- development libraries and headers Gerris is a system for the solution of the partial differential equations describing fluid flow. . This package contains the headers and development libraries needed to build applications using libgfs. . This package has MPI support built in. drwxr-xr-x root/root 0 2018-05-13 17:00 ./ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/include/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/include/gerris/ -rw-r--r-- root/root 4867 2018-05-13 17:00 ./usr/include/gerris/adaptive.h -rw-r--r-- root/root 3762 2018-05-13 17:00 ./usr/include/gerris/advection.h -rw-r--r-- root/root 1490 2018-05-13 17:00 ./usr/include/gerris/balance.h -rw-r--r-- root/root 10432 2018-05-13 17:00 ./usr/include/gerris/boundary.h -rw-r--r-- root/root 2105 2018-05-13 17:00 ./usr/include/gerris/cartesian.h -rw-r--r-- root/root 18544 2018-05-13 17:00 ./usr/include/gerris/domain.h -rw-r--r-- root/root 10394 2018-05-13 17:00 ./usr/include/gerris/event.h -rw-r--r-- root/root 11820 2018-05-13 17:00 ./usr/include/gerris/fluid.h -rw-r--r-- root/root 23268 2018-05-13 17:00 ./usr/include/gerris/ftt.h -rw-r--r-- root/root 7232 2018-05-13 17:00 ./usr/include/gerris/function.h -rw-r--r-- root/root 4699 2018-05-13 17:00 ./usr/include/gerris/graphic.h -rw-r--r-- root/root 1649 2018-05-13 17:00 ./usr/include/gerris/init.h -rw-r--r-- root/root 4138 2018-05-13 17:00 ./usr/include/gerris/isocube.h -rw-r--r-- root/root 1638 2018-05-13 17:00 ./usr/include/gerris/levelset.h -rw-r--r-- root/root 3198 2018-05-13 17:00 ./usr/include/gerris/map.h -rw-r--r-- root/root 5078 2018-05-13 17:00 ./usr/include/gerris/metric.h -rw-r--r-- root/root 2675 2018-05-13 17:00 ./usr/include/gerris/moving.h -rw-r--r-- root/root 1892 2018-05-13 17:00 ./usr/include/gerris/mpi_boundary.h -rw-r--r-- root/root 3387 2018-05-13 17:00 ./usr/include/gerris/ocean.h -rw-r--r-- root/root 10027 2018-05-13 17:00 ./usr/include/gerris/output.h -rw-r--r-- root/root 1443 2018-05-13 17:00 ./usr/include/gerris/particle.h -rw-r--r-- root/root 5385 2018-05-13 17:00 ./usr/include/gerris/poisson.h -rw-r--r-- root/root 3333 2018-05-13 17:00 ./usr/include/gerris/refine.h -rw-r--r-- root/root 3990 2018-05-13 17:00 ./usr/include/gerris/river.h -rw-r--r-- root/root 5708 2018-05-13 17:00 ./usr/include/gerris/simulation.h -rw-r--r-- root/root 3148 2018-05-13 17:00 ./usr/include/gerris/solid.h -rw-r--r-- root/root 10086 2018-05-13 17:00 ./usr/include/gerris/source.h -rw-r--r-- root/root 1870 2018-05-13 17:00 ./usr/include/gerris/spatial.h -rw-r--r-- root/root 4599 2018-05-13 17:00 ./usr/include/gerris/surface.h -rw-r--r-- root/root 4072 2018-05-13 17:00 ./usr/include/gerris/tension.h -rw-r--r-- root/root 5180 2018-05-13 17:00 ./usr/include/gerris/timestep.h -rw-r--r-- root/root 1589 2018-05-13 17:00 ./usr/include/gerris/unstructured.h -rw-r--r-- root/root 10845 2018-05-13 17:00 ./usr/include/gerris/utils.h -rw-r--r-- root/root 9866 2018-05-13 17:00 ./usr/include/gerris/variable.h -rw-r--r-- root/root 195 2018-05-13 17:00 ./usr/include/gerris/version.h -rw-r--r-- root/root 6340 2018-05-13 17:00 ./usr/include/gerris/vof.h -rw-r--r-- root/root 2073 2018-05-13 17:00 ./usr/include/gerris/wave.h -rw-r--r-- root/root 1525 2018-05-13 17:00 ./usr/include/gfs.h drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/libgfs2D-1.3.so -> libgfs2D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/libgfs2D.so -> libgfs2D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/libgfs3D-1.3.so -> libgfs3D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/libgfs3D.so -> libgfs3D-1.3.so.2.0.0 drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 271 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/pkgconfig/gerris2D.pc -rw-r--r-- root/root 260 2018-05-13 17:00 ./usr/lib/x86_64-linux-gnu/pkgconfig/gerris3D.pc drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-13 17:00 ./usr/share/doc/libgfs-dev/ lrwxrwxrwx root/root 0 2018-05-13 17:00 ./usr/share/doc/libgfs-dev/changelog.Debian.gz -> ../libgfs-1.3-2/changelog.Debian.gz -rw-r--r-- root/root 1933 2016-09-26 18:35 ./usr/share/doc/libgfs-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 126156 Build-Time: 561 Distribution: cosmic-proposed Host Architecture: amd64 Install-Time: 75 Job: gerris_20131206+dfsg-18build1.dsc Machine Architecture: amd64 Package: gerris Package-Time: 641 Source-Version: 20131206+dfsg-18build1 Space: 126156 Status: successful Version: 20131206+dfsg-18build1 -------------------------------------------------------------------------------- Finished at 20180513-1728 Build needed 00:10:41, 126156k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14874794 Scanning for processes to kill in build PACKAGEBUILD-14874794 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14874794 Stopping target for build PACKAGEBUILD-14874794 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14874794 Removing build PACKAGEBUILD-14874794