RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-022 4.4.0-45-generic #66+buildd2-Ubuntu SMP Fri Oct 21 06:29:15 UTC 2016 aarch64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.2 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.5. Syncing the system clock with the buildd NTP service... 22 Oct 01:31:04 ntpdate[1738]: adjust time server 10.211.37.1 offset 0.028399 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11057202', '/home/buildd/filecache-default/0309f704a9139dce864b78599cddd58acb3f260a'] Unpacking chroot for build PACKAGEBUILD-11057202 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11057202'] Mounting chroot for build PACKAGEBUILD-11057202 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11057202', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11057202 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11057202', 'arm64'] Updating debian chroot for build PACKAGEBUILD-11057202 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [92.1 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [95.6 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 Packages [1186 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [583 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe arm64 Packages [7501 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4488 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 Packages [37.1 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [25.8 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 Packages [199 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [93.5 kB] Fetched 14.6 MB in 4s (3306 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files binutils cpp-6 dmsetup g++-6 gcc-6 gcc-6-base libapparmor1 libasan3 libasn1-8-heimdal libatomic1 libcc1-0 libdevmapper1.02.1 libgcc-6-dev libgcc1 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal liblzma5 libroken18-heimdal libstdc++-6-dev libstdc++6 libubsan0 libwind0-heimdal linux-libc-dev tzdata xz-utils 32 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 24.2 MB of archives. After this operation, 324 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main arm64 base-files arm64 9.6ubuntu6 [55.8 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main arm64 libgomp1 arm64 6.2.0-8ubuntu1 [61.7 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main arm64 libitm1 arm64 6.2.0-8ubuntu1 [25.2 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main arm64 libcc1-0 arm64 6.2.0-8ubuntu1 [27.7 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 libatomic1 arm64 6.2.0-8ubuntu1 [6628 B] Get:6 http://ftpmaster.internal/ubuntu zesty/main arm64 libasan3 arm64 6.2.0-8ubuntu1 [267 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main arm64 libubsan0 arm64 6.2.0-8ubuntu1 [97.2 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main arm64 gcc-6-base arm64 6.2.0-8ubuntu1 [17.4 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main arm64 libstdc++6 arm64 6.2.0-8ubuntu1 [369 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main arm64 g++-6 arm64 6.2.0-8ubuntu1 [5884 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main arm64 libstdc++-6-dev arm64 6.2.0-8ubuntu1 [1384 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main arm64 libgcc-6-dev arm64 6.2.0-8ubuntu1 [557 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main arm64 gcc-6 arm64 6.2.0-8ubuntu1 [5738 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main arm64 cpp-6 arm64 6.2.0-8ubuntu1 [5155 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main arm64 libgcc1 arm64 1:6.2.0-8ubuntu1 [30.1 kB] Get:16 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 binutils arm64 2.27-9ubuntu1 [2497 kB] Get:17 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 liblzma5 arm64 5.2.2-1.2 [81.2 kB] Get:18 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 tzdata all 2016h-1 [169 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main arm64 libdevmapper1.02.1 arm64 2:1.02.133-1ubuntu1 [129 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main arm64 dmsetup arm64 2:1.02.133-1ubuntu1 [69.5 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main arm64 libapparmor1 arm64 2.10.95-4ubuntu5.1 [28.0 kB] Get:22 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libroken18-heimdal arm64 1.7~git20160703+dfsg-1 [34.4 kB] Get:23 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libasn1-8-heimdal arm64 1.7~git20160703+dfsg-1 [127 kB] Get:24 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libheimbase1-heimdal arm64 1.7~git20160703+dfsg-1 [24.2 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libhcrypto4-heimdal arm64 1.7~git20160703+dfsg-1 [73.1 kB] Get:26 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libwind0-heimdal arm64 1.7~git20160703+dfsg-1 [46.9 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libhx509-5-heimdal arm64 1.7~git20160703+dfsg-1 [86.2 kB] Get:28 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libkrb5-26-heimdal arm64 1.7~git20160703+dfsg-1 [162 kB] Get:29 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libheimntlm0-heimdal arm64 1.7~git20160703+dfsg-1 [13.1 kB] Get:30 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 libgssapi3-heimdal arm64 1.7~git20160703+dfsg-1 [76.9 kB] Get:31 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 xz-utils arm64 5.2.2-1.2 [79.1 kB] Get:32 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 linux-libc-dev arm64 4.8.0-26.28 [826 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.2 MB in 0s (27.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu6_arm64.deb ... Unpacking base-files (9.6ubuntu6) over (9.6ubuntu5) ... Setting up base-files (9.6ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../0-libgomp1_6.2.0-8ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../1-libitm1_6.2.0-8ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../2-libcc1-0_6.2.0-8ubuntu1_arm64.deb ... Unpacking libcc1-0:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../3-libatomic1_6.2.0-8ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../4-libasan3_6.2.0-8ubuntu1_arm64.deb ... Unpacking libasan3:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../5-libubsan0_6.2.0-8ubuntu1_arm64.deb ... Unpacking libubsan0:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../6-gcc-6-base_6.2.0-8ubuntu1_arm64.deb ... Unpacking gcc-6-base:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Setting up gcc-6-base:arm64 (6.2.0-8ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.2.0-8ubuntu1_arm64.deb ... Unpacking libstdc++6:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Setting up libstdc++6:arm64 (6.2.0-8ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../0-g++-6_6.2.0-8ubuntu1_arm64.deb ... Unpacking g++-6 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../1-libstdc++-6-dev_6.2.0-8ubuntu1_arm64.deb ... Unpacking libstdc++-6-dev:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../2-libgcc-6-dev_6.2.0-8ubuntu1_arm64.deb ... Unpacking libgcc-6-dev:arm64 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../3-gcc-6_6.2.0-8ubuntu1_arm64.deb ... Unpacking gcc-6 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../4-cpp-6_6.2.0-8ubuntu1_arm64.deb ... Unpacking cpp-6 (6.2.0-8ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../5-libgcc1_1%3a6.2.0-8ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:6.2.0-8ubuntu1) over (1:6.2.0-5ubuntu12) ... Setting up libgcc1:arm64 (1:6.2.0-8ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../0-binutils_2.27-9ubuntu1_arm64.deb ... Unpacking binutils (2.27-9ubuntu1) over (2.27-8ubuntu2) ... Preparing to unpack .../1-liblzma5_5.2.2-1.2_arm64.deb ... Unpacking liblzma5:arm64 (5.2.2-1.2) over (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up liblzma5:arm64 (5.2.2-1.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../00-tzdata_2016h-1_all.deb ... Unpacking tzdata (2016h-1) over (2016g-1) ... Preparing to unpack .../01-libdevmapper1.02.1_2%3a1.02.133-1ubuntu1_arm64.deb ... Unpacking libdevmapper1.02.1:arm64 (2:1.02.133-1ubuntu1) over (2:1.02.130-1ubuntu1) ... Preparing to unpack .../02-dmsetup_2%3a1.02.133-1ubuntu1_arm64.deb ... Unpacking dmsetup (2:1.02.133-1ubuntu1) over (2:1.02.130-1ubuntu1) ... Preparing to unpack .../03-libapparmor1_2.10.95-4ubuntu5.1_arm64.deb ... Unpacking libapparmor1:arm64 (2.10.95-4ubuntu5.1) over (2.10.95-4ubuntu5) ... Preparing to unpack .../04-libroken18-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libroken18-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../05-libasn1-8-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libasn1-8-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../06-libheimbase1-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libheimbase1-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../07-libhcrypto4-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libhcrypto4-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../08-libwind0-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libwind0-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../09-libhx509-5-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libhx509-5-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../10-libkrb5-26-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libkrb5-26-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../11-libheimntlm0-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libheimntlm0-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../12-libgssapi3-heimdal_1.7~git20160703+dfsg-1_arm64.deb ... Unpacking libgssapi3-heimdal:arm64 (1.7~git20160703+dfsg-1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../13-xz-utils_5.2.2-1.2_arm64.deb ... Unpacking xz-utils (5.2.2-1.2) over (5.1.1alpha+20120614-2.1ubuntu1) ... Preparing to unpack .../14-linux-libc-dev_4.8.0-26.28_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.8.0-26.28) over (4.8.0-22.24) ... Setting up libgomp1:arm64 (6.2.0-8ubuntu1) ... Setting up libatomic1:arm64 (6.2.0-8ubuntu1) ... Setting up libcc1-0:arm64 (6.2.0-8ubuntu1) ... Setting up libasan3:arm64 (6.2.0-8ubuntu1) ... Setting up tzdata (2016h-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 22 01:31:26 UTC 2016. Universal Time is now: Sat Oct 22 01:31:26 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libubsan0:arm64 (6.2.0-8ubuntu1) ... Setting up linux-libc-dev:arm64 (4.8.0-26.28) ... Setting up libroken18-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libdevmapper1.02.1:arm64 (2:1.02.133-1ubuntu1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up libapparmor1:arm64 (2.10.95-4ubuntu5.1) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up dmsetup (2:1.02.133-1ubuntu1) ... Setting up binutils (2.27-9ubuntu1) ... Setting up cpp-6 (6.2.0-8ubuntu1) ... Setting up libitm1:arm64 (6.2.0-8ubuntu1) ... Setting up libgcc-6-dev:arm64 (6.2.0-8ubuntu1) ... Setting up libstdc++-6-dev:arm64 (6.2.0-8ubuntu1) ... Setting up libwind0-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libasn1-8-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libhcrypto4-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libhx509-5-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up gcc-6 (6.2.0-8ubuntu1) ... Setting up g++-6 (6.2.0-8ubuntu1) ... Setting up libkrb5-26-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libheimntlm0-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Setting up libgssapi3-heimdal:arm64 (1.7~git20160703+dfsg-1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11057202', 'arm64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=zesty-proposed', '--purge=never', '--nolog', 'gerris_20131206+dfsg-9build1.dsc'] Initiating build PACKAGEBUILD-11057202 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-45-generic #66+buildd2-Ubuntu SMP Fri Oct 21 06:29:15 UTC 2016 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-022.buildd +==============================================================================+ | gerris 20131206+dfsg-9build1 (arm64) 22 Oct 2016 01:31 | +==============================================================================+ Package: gerris Version: 20131206+dfsg-9build1 Source Version: 20131206+dfsg-9build1 Distribution: zesty-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/gerris-EbEGfZ/gerris-20131206+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/gerris-EbEGfZ' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11057202/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- gerris_20131206+dfsg-9build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-rHOymC/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-rHOymC/apt_archive ./ InRelease Get:2 copy:/<>/resolver-rHOymC/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-rHOymC/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-rHOymC/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-rHOymC/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (141 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-rHOymC/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: autotools-dev, debhelper (>= 9.20160403), gfortran, libglib2.0-dev, libgsl0-dev, libgts-bin (>= 0.7.6+darcs121130-1.2), libgts-dev (>= 0.7.6+darcs121130-1.2), libnetcdf-dev, mpi-default-dev, python Filtered Build-Depends: autotools-dev, debhelper (>= 9.20160403), gfortran, libglib2.0-dev, libgsl0-dev, libgts-bin (>= 0.7.6+darcs121130-1.2), libgts-dev (>= 0.7.6+darcs121130-1.2), libnetcdf-dev, mpi-default-dev, python dpkg-deb: building package 'sbuild-build-depends-gerris-dummy' in '/<>/resolver-pkhwUp/apt_archive/sbuild-build-depends-gerris-dummy.deb'. Ign:1 copy:/<>/resolver-pkhwUp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-pkhwUp/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-pkhwUp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-pkhwUp/apt_archive ./ Sources [292 B] Get:5 copy:/<>/resolver-pkhwUp/apt_archive ./ Packages [609 B] Fetched 3020 B in 0s (171 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install gerris build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libcroco3 libcurl4-gnutls-dev libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgsl-dev libgsl2 libgts-0.7-5 libgts-bin libgts-dev libhdf5-10 libhdf5-cpp-11 libhdf5-dev libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libltdl-dev libltdl7 libmagic1 libmpdec2 libnetcdf-dev libnetcdf11 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libsz2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-common pkg-config po-debconf python python-minimal python2.7 python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff libcurl4-doc libcurl3-dbg libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libglib2.0-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libgts-doc libhdf5-doc libhwloc-contrib-plugins libtool-doc netcdf-bin netcdf-doc openmpi-doc pciutils gcj-jdk less www-browser opencl-icd libmail-box-perl python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc Recommended packages: curl | wget | lynx-cur shared-mime-info xdg-user-dirs openmpi-bin xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-6 groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libcroco3 libcurl4-gnutls-dev libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgsl-dev libgsl2 libgts-0.7-5 libgts-bin libgts-dev libhdf5-10 libhdf5-cpp-11 libhdf5-dev libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libltdl-dev libltdl7 libmagic1 libmpdec2 libnetcdf-dev libnetcdf11 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libsz2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-common pkg-config po-debconf python python-minimal python2.7 python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal sbuild-build-depends-gerris-dummy zlib1g-dev 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 45.1 MB of archives. After this operation, 218 MB of additional disk space will be used. Get:1 copy:/<>/resolver-pkhwUp/apt_archive ./ sbuild-build-depends-gerris-dummy 0.invalid.0 [854 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython3.5-minimal arm64 3.5.2-6 [521 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main arm64 libexpat1 arm64 2.2.0-1 [58.4 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main arm64 python3.5-minimal arm64 3.5.2-6 [1166 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main arm64 python3-minimal arm64 3.5.1-4 [23.4 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main arm64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main arm64 libmpdec2 arm64 2.4.2-1 [74.3 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython3.5-stdlib arm64 3.5.2-6 [2026 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main arm64 python3.5 arm64 3.5.2-6 [171 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython3-stdlib arm64 3.5.1-4 [6874 B] Get:11 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-python all 2.20160818 [80.0 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main arm64 python3 arm64 3.5.1-4 [8716 B] Get:13 http://ftpmaster.internal/ubuntu zesty/main arm64 groff-base arm64 1.22.3-8 [1102 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main arm64 bsdmainutils arm64 9.0.6ubuntu3 [170 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main arm64 libpipeline1 arm64 1.4.1-2 [21.9 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main arm64 man-db arm64 2.7.5-1 [832 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main arm64 libglib2.0-0 arm64 2.50.0-1 [946 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/universe arm64 libgts-0.7-5 arm64 0.7.6+darcs121130-1.2 [119 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main arm64 libjpeg-turbo8 arm64 1.5.0-0ubuntu1 [90.6 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main arm64 libpcrecpp0v5 arm64 2:8.39-2 [14.6 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main arm64 libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython2.7-minimal arm64 2.7.12-3build1 [340 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main arm64 python2.7-minimal arm64 2.7.12-3build1 [1128 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main arm64 python-minimal arm64 2.7.11-2 [28.3 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython2.7-stdlib arm64 2.7.12-3build1 [1843 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main arm64 python2.7 arm64 2.7.12-3build1 [225 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main arm64 libpython-stdlib arm64 2.7.11-2 [7858 B] Get:28 http://ftpmaster.internal/ubuntu zesty/main arm64 python arm64 2.7.11-2 [139 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main arm64 libmagic1 arm64 1:5.28-2ubuntu1 [226 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main arm64 file arm64 1:5.28-2ubuntu1 [21.5 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main arm64 gettext-base arm64 0.19.8.1-1ubuntu2 [45.4 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main arm64 libelf1 arm64 0.166-2ubuntu1 [36.7 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main arm64 libglib2.0-data all 2.50.0-1 [134 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main arm64 libicu57 arm64 57.1-4 [7527 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main arm64 libnuma1 arm64 2.0.11-1ubuntu2 [18.1 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main arm64 libxml2 arm64 2.9.4+dfsg1-2 [569 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main arm64 libsigsegv2 arm64 2.10-5 [13.3 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main arm64 m4 arm64 1.4.17-5 [184 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main arm64 autoconf all 2.69-10 [321 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main arm64 autotools-dev all 20160430.1 [39.6 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main arm64 automake all 1:1.15-4ubuntu1 [510 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main arm64 autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main arm64 libtool all 2.4.6-1 [194 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-autoreconf all 12 [15.8 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main arm64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main arm64 libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main arm64 dh-strip-nondeterminism all 0.028-1 [4820 B] Get:49 http://ftpmaster.internal/ubuntu zesty/main arm64 libcroco3 arm64 0.6.11-1 [66.0 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main arm64 gettext arm64 0.19.8.1-1ubuntu2 [1012 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:52 http://ftpmaster.internal/ubuntu zesty/main arm64 po-debconf all 1.0.19 [234 kB] Get:53 http://ftpmaster.internal/ubuntu zesty-proposed/main arm64 debhelper all 10.2.2ubuntu1 [742 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main arm64 libgfortran3 arm64 6.2.0-8ubuntu1 [200 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main arm64 libgfortran-6-dev arm64 6.2.0-8ubuntu1 [238 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main arm64 gfortran-6 arm64 6.2.0-8ubuntu1 [5478 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main arm64 gfortran arm64 4:6.1.1-1ubuntu2 [1262 B] Get:58 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 hdf5-helpers arm64 1.8.16+docs-8build1 [12.4 kB] Get:59 http://ftpmaster.internal/ubuntu zesty/universe arm64 libaec0 arm64 0.3.2-1 [16.5 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main arm64 libcurl4-gnutls-dev arm64 7.50.1-1ubuntu1 [237 kB] Get:61 http://ftpmaster.internal/ubuntu zesty/main arm64 libglib2.0-bin arm64 2.50.0-1 [38.2 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main arm64 libpcre16-3 arm64 2:8.39-2 [118 kB] Get:63 http://ftpmaster.internal/ubuntu zesty/main arm64 libpcre32-3 arm64 2:8.39-2 [111 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main arm64 libpcre3-dev arm64 2:8.39-2 [448 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main arm64 pkg-config arm64 0.29.1-0ubuntu1 [42.9 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main arm64 zlib1g-dev arm64 1:1.2.8.dfsg-2ubuntu5 [162 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main arm64 libglib2.0-dev arm64 2.50.0-1 [1327 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main arm64 libgsl2 arm64 2.1+dfsg-2 [691 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main arm64 libgsl-dev arm64 2.1+dfsg-2 [827 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/universe arm64 libgts-bin arm64 0.7.6+darcs121130-1.2 [38.7 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/universe arm64 libgts-dev arm64 0.7.6+darcs121130-1.2 [148 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/universe arm64 libsz2 arm64 0.3.2-1 [4916 B] Get:73 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 libhdf5-10 arm64 1.8.16+docs-8build1 [815 kB] Get:74 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 libhdf5-cpp-11 arm64 1.8.16+docs-8build1 [95.6 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main arm64 libjpeg-turbo8-dev arm64 1.5.0-0ubuntu1 [230 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:77 http://ftpmaster.internal/ubuntu zesty/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:78 http://ftpmaster.internal/ubuntu zesty/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:79 http://ftpmaster.internal/ubuntu zesty/universe arm64 libaec-dev arm64 0.3.2-1 [14.8 kB] Get:80 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 libhdf5-dev arm64 1.8.16+docs-8build1 [6229 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main arm64 libltdl7 arm64 2.4.6-1 [35.8 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main arm64 libltdl-dev arm64 2.4.6-1 [160 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/universe arm64 libnetcdf11 arm64 1:4.4.1-2 [242 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/universe arm64 libnetcdf-dev arm64 1:4.4.1-2 [37.1 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main arm64 libnl-3-200 arm64 3.2.27-1 [43.3 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main arm64 libnl-route-3-200 arm64 3.2.27-1 [97.3 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main arm64 libpciaccess0 arm64 0.13.4-1 [15.2 kB] Get:88 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 openmpi-common all 2.0.1-5ubuntu1 [134 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/universe arm64 libhwloc5 arm64 1.11.3-2 [79.3 kB] Get:90 http://ftpmaster.internal/ubuntu zesty/main arm64 libnuma-dev arm64 2.0.11-1ubuntu2 [30.2 kB] Get:91 http://ftpmaster.internal/ubuntu zesty/universe arm64 libhwloc-dev arm64 1.11.3-2 [141 kB] Get:92 http://ftpmaster.internal/ubuntu zesty/main arm64 ocl-icd-libopencl1 arm64 2.2.9-2 [28.8 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/universe arm64 libhwloc-plugins arm64 1.11.3-2 [10.9 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main arm64 libibverbs1 arm64 1.2.0-2ubuntu1 [25.8 kB] Get:95 http://ftpmaster.internal/ubuntu zesty/main arm64 libibverbs-dev arm64 1.2.0-2ubuntu1 [82.1 kB] Get:96 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 libopenmpi2 arm64 2.0.1-5ubuntu1 [1572 kB] Get:97 http://ftpmaster.internal/ubuntu zesty-proposed/universe arm64 libopenmpi-dev arm64 2.0.1-5ubuntu1 [905 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/universe arm64 mpi-default-dev arm64 1.7 [3878 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.1 MB in 3s (13.3 MB/s) Selecting previously unselected package libpython3.5-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12189 files and directories currently installed.) Preparing to unpack .../0-libpython3.5-minimal_3.5.2-6_arm64.deb ... Unpacking libpython3.5-minimal:arm64 (3.5.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../1-libexpat1_2.2.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.0-1) ... Selecting previously unselected package python3.5-minimal. Preparing to unpack .../2-python3.5-minimal_3.5.2-6_arm64.deb ... Unpacking python3.5-minimal (3.5.2-6) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.5.1-4_arm64.deb ... Unpacking python3-minimal (3.5.1-4) ... Selecting previously unselected package mime-support. Preparing to unpack .../4-mime-support_3.60ubuntu1_all.deb ... Unpacking mime-support (3.60ubuntu1) ... Selecting previously unselected package libmpdec2:arm64. Preparing to unpack .../5-libmpdec2_2.4.2-1_arm64.deb ... Unpacking libmpdec2:arm64 (2.4.2-1) ... Selecting previously unselected package libpython3.5-stdlib:arm64. Preparing to unpack .../6-libpython3.5-stdlib_3.5.2-6_arm64.deb ... Unpacking libpython3.5-stdlib:arm64 (3.5.2-6) ... Selecting previously unselected package python3.5. Preparing to unpack .../7-python3.5_3.5.2-6_arm64.deb ... Unpacking python3.5 (3.5.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.5.1-4_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.5.1-4) ... Selecting previously unselected package dh-python. Preparing to unpack .../9-dh-python_2.20160818_all.deb ... Unpacking dh-python (2.20160818) ... Setting up libpython3.5-minimal:arm64 (3.5.2-6) ... Setting up libexpat1:arm64 (2.2.0-1) ... Setting up python3.5-minimal (3.5.2-6) ... Setting up python3-minimal (3.5.1-4) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13139 files and directories currently installed.) Preparing to unpack .../00-python3_3.5.1-4_arm64.deb ... Unpacking python3 (3.5.1-4) ... Selecting previously unselected package groff-base. Preparing to unpack .../01-groff-base_1.22.3-8_arm64.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.6ubuntu3_arm64.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.4.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.5-1_arm64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../05-libglib2.0-0_2.50.0-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.50.0-1) ... Selecting previously unselected package libgts-0.7-5:arm64. Preparing to unpack .../06-libgts-0.7-5_0.7.6+darcs121130-1.2_arm64.deb ... Unpacking libgts-0.7-5:arm64 (0.7.6+darcs121130-1.2) ... Selecting previously unselected package libjpeg-turbo8:arm64. Preparing to unpack .../07-libjpeg-turbo8_1.5.0-0ubuntu1_arm64.deb ... Unpacking libjpeg-turbo8:arm64 (1.5.0-0ubuntu1) ... Selecting previously unselected package libpcrecpp0v5:arm64. Preparing to unpack .../08-libpcrecpp0v5_2%3a8.39-2_arm64.deb ... Unpacking libpcrecpp0v5:arm64 (2:8.39-2) ... Selecting previously unselected package libunistring0:arm64. Preparing to unpack .../09-libunistring0_0.9.3-5.2ubuntu1_arm64.deb ... Unpacking libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../10-libpython2.7-minimal_2.7.12-3build1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.12-3build1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../11-python2.7-minimal_2.7.12-3build1_arm64.deb ... Unpacking python2.7-minimal (2.7.12-3build1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../12-python-minimal_2.7.11-2_arm64.deb ... Unpacking python-minimal (2.7.11-2) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../13-libpython2.7-stdlib_2.7.12-3build1_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.12-3build1) ... Selecting previously unselected package python2.7. Preparing to unpack .../14-python2.7_2.7.12-3build1_arm64.deb ... Unpacking python2.7 (2.7.12-3build1) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../15-libpython-stdlib_2.7.11-2_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.11-2) ... Setting up libpython2.7-minimal:arm64 (2.7.12-3build1) ... Setting up python2.7-minimal (2.7.12-3build1) ... Setting up python-minimal (2.7.11-2) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14447 files and directories currently installed.) Preparing to unpack .../00-python_2.7.11-2_arm64.deb ... Unpacking python (2.7.11-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../01-libmagic1_1%3a5.28-2ubuntu1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.28-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../02-file_1%3a5.28-2ubuntu1_arm64.deb ... Unpacking file (1:5.28-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../03-gettext-base_0.19.8.1-1ubuntu2_arm64.deb ... Unpacking gettext-base (0.19.8.1-1ubuntu2) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../04-libelf1_0.166-2ubuntu1_arm64.deb ... Unpacking libelf1:arm64 (0.166-2ubuntu1) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../05-libglib2.0-data_2.50.0-1_all.deb ... Unpacking libglib2.0-data (2.50.0-1) ... Selecting previously unselected package libicu57:arm64. Preparing to unpack .../06-libicu57_57.1-4_arm64.deb ... Unpacking libicu57:arm64 (57.1-4) ... Selecting previously unselected package libnuma1:arm64. Preparing to unpack .../07-libnuma1_2.0.11-1ubuntu2_arm64.deb ... Unpacking libnuma1:arm64 (2.0.11-1ubuntu2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../08-libxml2_2.9.4+dfsg1-2_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-2) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../09-libsigsegv2_2.10-5_arm64.deb ... Unpacking libsigsegv2:arm64 (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.17-5_arm64.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20160430.1_all.deb ... Unpacking autotools-dev (20160430.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.15-4ubuntu1_all.deb ... Unpacking automake (1:1.15-4ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.19.8.1-1ubuntu2_all.deb ... Unpacking autopoint (0.19.8.1-1ubuntu2) ... Selecting previously unselected package libtool. Preparing to unpack .../15-libtool_2.4.6-1_all.deb ... Unpacking libtool (2.4.6-1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../16-dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../17-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_0.028-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.028-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../19-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_0.028-1_all.deb ... Unpacking dh-strip-nondeterminism (0.028-1) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../21-libcroco3_0.6.11-1_arm64.deb ... Unpacking libcroco3:arm64 (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../22-gettext_0.19.8.1-1ubuntu2_arm64.deb ... Unpacking gettext (0.19.8.1-1ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../23-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../24-po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package debhelper. Preparing to unpack .../25-debhelper_10.2.2ubuntu1_all.deb ... Unpacking debhelper (10.2.2ubuntu1) ... Selecting previously unselected package libgfortran3:arm64. Preparing to unpack .../26-libgfortran3_6.2.0-8ubuntu1_arm64.deb ... Unpacking libgfortran3:arm64 (6.2.0-8ubuntu1) ... Selecting previously unselected package libgfortran-6-dev:arm64. Preparing to unpack .../27-libgfortran-6-dev_6.2.0-8ubuntu1_arm64.deb ... Unpacking libgfortran-6-dev:arm64 (6.2.0-8ubuntu1) ... Selecting previously unselected package gfortran-6. Preparing to unpack .../28-gfortran-6_6.2.0-8ubuntu1_arm64.deb ... Unpacking gfortran-6 (6.2.0-8ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../29-gfortran_4%3a6.1.1-1ubuntu2_arm64.deb ... Unpacking gfortran (4:6.1.1-1ubuntu2) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../30-hdf5-helpers_1.8.16+docs-8build1_arm64.deb ... Unpacking hdf5-helpers (1.8.16+docs-8build1) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../31-libaec0_0.3.2-1_arm64.deb ... Unpacking libaec0:arm64 (0.3.2-1) ... Selecting previously unselected package libcurl4-gnutls-dev:arm64. Preparing to unpack .../32-libcurl4-gnutls-dev_7.50.1-1ubuntu1_arm64.deb ... Unpacking libcurl4-gnutls-dev:arm64 (7.50.1-1ubuntu1) ... Selecting previously unselected package libglib2.0-bin. Preparing to unpack .../33-libglib2.0-bin_2.50.0-1_arm64.deb ... Unpacking libglib2.0-bin (2.50.0-1) ... Selecting previously unselected package libpcre16-3:arm64. Preparing to unpack .../34-libpcre16-3_2%3a8.39-2_arm64.deb ... Unpacking libpcre16-3:arm64 (2:8.39-2) ... Selecting previously unselected package libpcre32-3:arm64. Preparing to unpack .../35-libpcre32-3_2%3a8.39-2_arm64.deb ... Unpacking libpcre32-3:arm64 (2:8.39-2) ... Selecting previously unselected package libpcre3-dev:arm64. Preparing to unpack .../36-libpcre3-dev_2%3a8.39-2_arm64.deb ... Unpacking libpcre3-dev:arm64 (2:8.39-2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../37-pkg-config_0.29.1-0ubuntu1_arm64.deb ... Unpacking pkg-config (0.29.1-0ubuntu1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../38-zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu5_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.8.dfsg-2ubuntu5) ... Selecting previously unselected package libglib2.0-dev. Preparing to unpack .../39-libglib2.0-dev_2.50.0-1_arm64.deb ... Unpacking libglib2.0-dev (2.50.0-1) ... Selecting previously unselected package libgsl2:arm64. Preparing to unpack .../40-libgsl2_2.1+dfsg-2_arm64.deb ... Unpacking libgsl2:arm64 (2.1+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../41-libgsl-dev_2.1+dfsg-2_arm64.deb ... Unpacking libgsl-dev (2.1+dfsg-2) ... Selecting previously unselected package libgts-bin. Preparing to unpack .../42-libgts-bin_0.7.6+darcs121130-1.2_arm64.deb ... Unpacking libgts-bin (0.7.6+darcs121130-1.2) ... Selecting previously unselected package libgts-dev:arm64. Preparing to unpack .../43-libgts-dev_0.7.6+darcs121130-1.2_arm64.deb ... Unpacking libgts-dev:arm64 (0.7.6+darcs121130-1.2) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../44-libsz2_0.3.2-1_arm64.deb ... Unpacking libsz2:arm64 (0.3.2-1) ... Selecting previously unselected package libhdf5-10:arm64. Preparing to unpack .../45-libhdf5-10_1.8.16+docs-8build1_arm64.deb ... Unpacking libhdf5-10:arm64 (1.8.16+docs-8build1) ... Selecting previously unselected package libhdf5-cpp-11:arm64. Preparing to unpack .../46-libhdf5-cpp-11_1.8.16+docs-8build1_arm64.deb ... Unpacking libhdf5-cpp-11:arm64 (1.8.16+docs-8build1) ... Selecting previously unselected package libjpeg-turbo8-dev:arm64. Preparing to unpack .../47-libjpeg-turbo8-dev_1.5.0-0ubuntu1_arm64.deb ... Unpacking libjpeg-turbo8-dev:arm64 (1.5.0-0ubuntu1) ... Selecting previously unselected package libjpeg8:arm64. Preparing to unpack .../48-libjpeg8_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg8:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg8-dev:arm64. Preparing to unpack .../49-libjpeg8-dev_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg8-dev:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:arm64. Preparing to unpack .../50-libjpeg-dev_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg-dev:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../51-libaec-dev_0.3.2-1_arm64.deb ... Unpacking libaec-dev:arm64 (0.3.2-1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../52-libhdf5-dev_1.8.16+docs-8build1_arm64.deb ... Unpacking libhdf5-dev (1.8.16+docs-8build1) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../53-libltdl7_2.4.6-1_arm64.deb ... Unpacking libltdl7:arm64 (2.4.6-1) ... Selecting previously unselected package libltdl-dev:arm64. Preparing to unpack .../54-libltdl-dev_2.4.6-1_arm64.deb ... Unpacking libltdl-dev:arm64 (2.4.6-1) ... Selecting previously unselected package libnetcdf11. Preparing to unpack .../55-libnetcdf11_1%3a4.4.1-2_arm64.deb ... Unpacking libnetcdf11 (1:4.4.1-2) ... Selecting previously unselected package libnetcdf-dev. Preparing to unpack .../56-libnetcdf-dev_1%3a4.4.1-2_arm64.deb ... Unpacking libnetcdf-dev (1:4.4.1-2) ... Selecting previously unselected package libnl-3-200:arm64. Preparing to unpack .../57-libnl-3-200_3.2.27-1_arm64.deb ... Unpacking libnl-3-200:arm64 (3.2.27-1) ... Selecting previously unselected package libnl-route-3-200:arm64. Preparing to unpack .../58-libnl-route-3-200_3.2.27-1_arm64.deb ... Unpacking libnl-route-3-200:arm64 (3.2.27-1) ... Selecting previously unselected package libpciaccess0:arm64. Preparing to unpack .../59-libpciaccess0_0.13.4-1_arm64.deb ... Unpacking libpciaccess0:arm64 (0.13.4-1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../60-openmpi-common_2.0.1-5ubuntu1_all.deb ... Unpacking openmpi-common (2.0.1-5ubuntu1) ... Selecting previously unselected package libhwloc5:arm64. Preparing to unpack .../61-libhwloc5_1.11.3-2_arm64.deb ... Unpacking libhwloc5:arm64 (1.11.3-2) ... Selecting previously unselected package libnuma-dev:arm64. Preparing to unpack .../62-libnuma-dev_2.0.11-1ubuntu2_arm64.deb ... Unpacking libnuma-dev:arm64 (2.0.11-1ubuntu2) ... Selecting previously unselected package libhwloc-dev:arm64. Preparing to unpack .../63-libhwloc-dev_1.11.3-2_arm64.deb ... Unpacking libhwloc-dev:arm64 (1.11.3-2) ... Selecting previously unselected package ocl-icd-libopencl1:arm64. Preparing to unpack .../64-ocl-icd-libopencl1_2.2.9-2_arm64.deb ... Unpacking ocl-icd-libopencl1:arm64 (2.2.9-2) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../65-libhwloc-plugins_1.11.3-2_arm64.deb ... Unpacking libhwloc-plugins (1.11.3-2) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../66-libibverbs1_1.2.0-2ubuntu1_arm64.deb ... Unpacking libibverbs1 (1.2.0-2ubuntu1) ... Selecting previously unselected package libibverbs-dev. Preparing to unpack .../67-libibverbs-dev_1.2.0-2ubuntu1_arm64.deb ... Unpacking libibverbs-dev (1.2.0-2ubuntu1) ... Selecting previously unselected package libopenmpi2. Preparing to unpack .../68-libopenmpi2_2.0.1-5ubuntu1_arm64.deb ... Unpacking libopenmpi2 (2.0.1-5ubuntu1) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../69-libopenmpi-dev_2.0.1-5ubuntu1_arm64.deb ... Unpacking libopenmpi-dev (2.0.1-5ubuntu1) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../70-mpi-default-dev_1.7_arm64.deb ... Unpacking mpi-default-dev (1.7) ... Selecting previously unselected package sbuild-build-depends-gerris-dummy. Preparing to unpack .../71-sbuild-build-depends-gerris-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-gerris-dummy (0.invalid.0) ... Setting up libaec0:arm64 (0.3.2-1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:arm64 (2.10-5) ... Setting up libnuma1:arm64 (2.0.11-1ubuntu2) ... Setting up libelf1:arm64 (0.166-2ubuntu1) ... Setting up libgfortran3:arm64 (6.2.0-8ubuntu1) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:arm64 (2.50.0-1) ... No schema files found: doing nothing. Setting up libgfortran-6-dev:arm64 (6.2.0-8ubuntu1) ... Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libjpeg-turbo8:arm64 (1.5.0-0ubuntu1) ... Setting up libpipeline1:arm64 (1.4.1-2) ... Setting up libgsl2:arm64 (2.1+dfsg-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:arm64 (57.1-4) ... Setting up libxml2:arm64 (2.9.4+dfsg1-2) ... Setting up libmagic1:arm64 (1:5.28-2ubuntu1) ... Setting up libcroco3:arm64 (0.6.11-1) ... Setting up pkg-config (0.29.1-0ubuntu1) ... Setting up libjpeg-turbo8-dev:arm64 (1.5.0-0ubuntu1) ... Setting up libglib2.0-data (2.50.0-1) ... Setting up openmpi-common (2.0.1-5ubuntu1) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Setting up libltdl7:arm64 (2.4.6-1) ... Setting up libpciaccess0:arm64 (0.13.4-1) ... Setting up libpcrecpp0v5:arm64 (2:8.39-2) ... Setting up libpcre32-3:arm64 (2:8.39-2) ... Setting up libpcre16-3:arm64 (2:8.39-2) ... Setting up libnuma-dev:arm64 (2.0.11-1ubuntu2) ... Setting up ocl-icd-libopencl1:arm64 (2.2.9-2) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:arm64 (3.2.27-1) ... Setting up libglib2.0-bin (2.50.0-1) ... Setting up libcurl4-gnutls-dev:arm64 (7.50.1-1ubuntu1) ... Setting up hdf5-helpers (1.8.16+docs-8build1) ... Setting up libpython2.7-stdlib:arm64 (2.7.12-3build1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libmpdec2:arm64 (2.4.2-1) ... Setting up libsz2:arm64 (0.3.2-1) ... Setting up zlib1g-dev:arm64 (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libgts-0.7-5:arm64 (0.7.6+darcs121130-1.2) ... Setting up gfortran-6 (6.2.0-8ubuntu1) ... Setting up libpcre3-dev:arm64 (2:8.39-2) ... Setting up libhdf5-10:arm64 (1.8.16+docs-8build1) ... Setting up libltdl-dev:arm64 (2.4.6-1) ... Setting up libhdf5-cpp-11:arm64 (1.8.16+docs-8build1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up libgsl-dev (2.1+dfsg-2) ... Setting up libpython3.5-stdlib:arm64 (3.5.2-6) ... Setting up libaec-dev:arm64 (0.3.2-1) ... Setting up python2.7 (2.7.12-3build1) ... Setting up libhdf5-dev (1.8.16+docs-8build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnl-route-3-200:arm64 (3.2.27-1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-2ubuntu1) ... Setting up libhwloc5:arm64 (1.11.3-2) ... Setting up libpython-stdlib:arm64 (2.7.11-2) ... Setting up libhwloc-plugins (1.11.3-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgts-bin (0.7.6+darcs121130-1.2) ... Setting up python (2.7.11-2) ... Setting up libtool (2.4.6-1) ... Setting up python3.5 (3.5.2-6) ... Setting up gfortran (4:6.1.1-1ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpython3-stdlib:arm64 (3.5.1-4) ... Setting up libibverbs1 (1.2.0-2ubuntu1) ... Setting up libnetcdf11 (1:4.4.1-2) ... Setting up po-debconf (1.0.19) ... Setting up libhwloc-dev:arm64 (1.11.3-2) ... Setting up libopenmpi2 (2.0.1-5ubuntu1) ... Setting up libnetcdf-dev (1:4.4.1-2) ... Setting up libibverbs-dev (1.2.0-2ubuntu1) ... Setting up libopenmpi-dev (2.0.1-5ubuntu1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.7) ... Setting up dh-python (2.20160818) ... Setting up dh-autoreconf (12) ... Setting up python3 (3.5.1-4) ... Setting up libglib2.0-dev (2.50.0-1) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up libgts-dev:arm64 (0.7.6+darcs121130-1.2) ... Setting up sbuild-build-depends-gerris-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-45-generic arm64 (aarch64) Toolchain package versions: binutils_2.27-9ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.0-8ubuntu1 gcc-6_6.2.0-8ubuntu1 libc6-dev_2.24-3ubuntu1 libstdc++-6-dev_6.2.0-8ubuntu1 libstdc++6_6.2.0-8ubuntu1 linux-libc-dev_4.8.0-26.28 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3.1 apt-transport-https_1.3.1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20160430.1 base-files_9.6ubuntu6 base-passwd_3.5.40 bash_4.3-15ubuntu1 binutils_2.27-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28.2-1ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-6_6.2.0-8ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.028-1 diffutils_1:3.3-3 dmsetup_2:1.02.133-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-6_6.2.0-8ubuntu1 gcc_4:6.1.1-1ubuntu2 gcc-6_6.2.0-8ubuntu1 gcc-6-base_6.2.0-8ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gfortran_4:6.1.1-1ubuntu2 gfortran-6_6.2.0-8ubuntu1 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hdf5-helpers_1.8.16+docs-8build1 hostname_3.18 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libaec-dev_0.3.2-1 libaec0_0.3.2-1 libapparmor1_2.10.95-4ubuntu5.1 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-8ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1 libassuan0_2.4.3-1 libatomic1_6.2.0-8ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.28.2-1ubuntu1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-3ubuntu1 libc-dev-bin_2.24-3ubuntu1 libc6_2.24-3ubuntu1 libc6-dev_2.24-3ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.0-8ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libcurl4-gnutls-dev_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.133-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libelf1_0.166-2ubuntu1 libexpat1_2.2.0-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.28.2-1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libgcc-6-dev_6.2.0-8ubuntu1 libgcc1_1:6.2.0-8ubuntu1 libgcrypt20_1.7.2-2ubuntu1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.0-8ubuntu1 libgfortran3_6.2.0-8ubuntu1 libglib2.0-0_2.50.0-1 libglib2.0-bin_2.50.0-1 libglib2.0-data_2.50.0-1 libglib2.0-dev_2.50.0-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-5ubuntu1 libgomp1_6.2.0-8ubuntu1 libgpg-error0_1.24-1 libgsl-dev_2.1+dfsg-2 libgsl2_2.1+dfsg-2 libgssapi-krb5-2_1.14.3+dfsg-2 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libgts-0.7-5_0.7.6+darcs121130-1.2 libgts-bin_0.7.6+darcs121130-1.2 libgts-dev_0.7.6+darcs121130-1.2 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libhdf5-10_1.8.16+docs-8build1 libhdf5-cpp-11_1.8.16+docs-8build1 libhdf5-dev_1.8.16+docs-8build1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhwloc-dev_1.11.3-2 libhwloc-plugins_1.11.3-2 libhwloc5_1.11.3-2 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libibverbs-dev_1.2.0-2ubuntu1 libibverbs1_1.2.0-2ubuntu1 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libitm1_6.2.0-8ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.5.0-0ubuntu1 libjpeg-turbo8-dev_1.5.0-0ubuntu1 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.4-4 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 libltdl-dev_2.4.6-1 libltdl7_2.4.6-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic1_1:5.28-2ubuntu1 libmount1_2.28.2-1ubuntu1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnetcdf-dev_1:4.4.1-2 libnetcdf11_1:4.4.1-2 libnettle6_3.2-1 libnl-3-200_3.2.27-1 libnl-route-3-200_3.2.27-1 libnpth0_1.2-3 libnuma-dev_2.0.11-1ubuntu2 libnuma1_2.0.11-1ubuntu2 libopenmpi-dev_2.0.1-5ubuntu1 libopenmpi2_2.0.1-5ubuntu1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpciaccess0_0.13.4-1 libpcre16-3_2:8.39-2 libpcre3_2:8.39-2 libpcre3-dev_2:8.39-2 libpcre32-3_2:8.39-2 libpcrecpp0v5_2:8.39-2 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpng16-16_1.6.25-1 libprocps6_2:3.3.12-1ubuntu2 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.12-3build1 libpython2.7-stdlib_2.7.12-3build1 libpython3-stdlib_3.5.1-4 libpython3.5-minimal_3.5.2-6 libpython3.5-stdlib_3.5.2-6 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28.2-1ubuntu1 libsqlite3-0_3.14.1-1build1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu9 libstdc++-6-dev_6.2.0-8ubuntu1 libstdc++6_6.2.0-8ubuntu1 libsystemd0_231-9git1 libsz2_0.3.2-1 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libubsan0_6.2.0-8ubuntu1 libudev1_231-9git1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1ubuntu1 libwind0-heimdal_1.7~git20160703+dfsg-1 libxml2_2.9.4+dfsg1-2 linux-libc-dev_4.8.0-26.28 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.28.2-1ubuntu1 mpi-default-dev_1.7 multiarch-support_2.24-3ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 ocl-icd-libopencl1_2.2.9-2 openmpi-common_2.0.1-5ubuntu1 openssl_1.0.2g-1ubuntu9 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pinentry-curses_0.9.7-5 pkg-config_0.29.1-0ubuntu1 pkg-create-dbgsym_0.72 pkgbinarymangler_131 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-3build1 python2.7-minimal_2.7.12-3build1 python3_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.2-6 python3.5-minimal_3.5.2-6 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gerris-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 systemd_231-9git1 systemd-sysv_231-9git1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 tzdata_2016h-1 ubuntu-keyring_2016.09.19 util-linux_2.28.2-1ubuntu1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Oct 22 01:30:04 2016 UTC gpgv: using RSA key gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gerris_20131206+dfsg-9build1.dsc dpkg-source: info: extracting gerris in gerris-20131206+dfsg dpkg-source: info: unpacking gerris_20131206+dfsg.orig.tar.gz dpkg-source: info: unpacking gerris_20131206+dfsg-9build1.debian.tar.xz dpkg-source: info: applying 01_automake_doc_examples dpkg-source: info: applying 02_fix_makefiles.patch dpkg-source: info: applying 03_build_funct.patch dpkg-source: info: applying 04_replace_ffmpeg_by_avconv.patch dpkg-source: info: applying 05_reproducible_build.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<>/gerris-20131206+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>/gerris-20131206+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package gerris dpkg-buildpackage: info: source version 20131206+dfsg-9build1 dpkg-buildpackage: info: source distribution zesty dpkg-source --before-build gerris-20131206+dfsg dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --parallel dh_testdir dh_auto_clean dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel dh_autoreconf -a -O--parallel libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:50: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:50: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:108: installing './compile' configure.ac:50: installing './missing' doc/Makefile.am:9: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') doc/Makefile.am:12: warning: source file '$(top_srcdir)/src/init.c' is in a subdirectory, doc/Makefile.am:12: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. doc/Makefile.am: installing './depcomp' doc/examples/Makefile.am:118: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') doc/examples/Makefile.am:123: warning: source file '$(top_srcdir)/src/init.c' is in a subdirectory, doc/examples/Makefile.am:123: but option 'subdir-objects' is disabled parallel-tests: installing './test-driver' modules/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') tools/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/gerris-20131206+dfsg' dh_auto_configure -- --enable-mpi ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-mpi checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for mpicc... yes checking for gcc... mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking whether mpicc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of mpicc... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for library containing strerror... none required checking for ANSI C header files... (cached) yes checking whether pointers can be stored in doubles... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTS... yes checking whether modules are supported... yes checking for pkg-config... yes checking for m4... yes checking check whether m4 accepts the -P option... yes checking for pj_fwd in -lproj... no configure: WARNING: libproj not found. Map module will not be available. checking proj_api.h usability... no checking proj_api.h presence... no checking for proj_api.h... no checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 0.2.5... yes checking for nc_open in -lnetcdf... yes checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/aarch64-linux-gnu/6 -L/usr/lib/gcc/aarch64-linux-gnu/6/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/6/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/6/../../.. -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for ode-config... no configure: WARNING: ODE not found. ode module will not be available. checking for HYPRE_IJMatrixCreate in -lHYPRE... no configure: WARNING: HYPRE not found. hypre Module won't be available. checking for lis_initialize in -llis... no configure: WARNING: lis not found. lis Module won't be available. checking for FFTW3... no checking fenv.h usability... yes checking fenv.h presence... yes checking for fenv.h... yes checking for unistd.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for getopt_long... yes checking for g_mkdtemp... yes checking for open_memstream... yes checking for funopen... no checking for open_memstream... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/gerris2D.pc config.status: creating src/gerris3D.pc config.status: creating tools/Makefile config.status: creating modules/Makefile config.status: creating modules/RStarTree/Makefile config.status: creating modules/kdt/Makefile config.status: creating modules/fes2004/Makefile config.status: creating modules/wavewatch/Makefile config.status: creating modules/culvert/Makefile config.status: creating test/Makefile config.status: creating doc/Makefile config.status: creating doc/tutorial/Makefile config.status: creating doc/examples/Makefile config.status: creating doc/manpages/Makefile config.status: creating doc/examples/gfs2doc config.status: creating doc/examples/gfs-highlight config.status: creating doc/examples/crossref.sh config.status: creating desktop/Makefile config.status: creating debian/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration summary System = aarch64-unknown-linux-gnu C Compiler = mpicc C Flags = -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 MPI enabled = yes GModule support = yes pkg-config = yes m4 = yes m4 options = -P open_memstream = yes Modules map = no tide = yes stokes = yes wavewatch = no hypre = no lis = no agmg = no ode = no bubbles = yes fft = no make[1]: Leaving directory '/<>/gerris-20131206+dfsg' dh_auto_build -a -O--parallel make -j1 make[1]: Entering directory '/<>/gerris-20131206+dfsg' make all-recursive make[2]: Entering directory '/<>/gerris-20131206+dfsg' Making all in src make[3]: Entering directory '/<>/gerris-20131206+dfsg/src' make all-am make[4]: Entering directory '/<>/gerris-20131206+dfsg/src' /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-ftt.lo `test -f 'ftt.c' || echo './'`ftt.c In file included from /usr/include/stdlib.h:24:0, from ftt.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-fluid.lo `test -f 'fluid.c' || echo './'`fluid.c In file included from /usr/include/math.h:26:0, from fluid.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fluid.c:126:20: warning: ‘interpolate_1D2’ defined but not used [-Wunused-function] static GfsGradient interpolate_1D2 (FttCell * cell, ^~~~~~~~~~~~~~~ fluid.c: In function ‘face_bilinear’: fluid.c:1151:37: warning: ‘d[2]’ is used uninitialized in this function [-Wuninitialized] d1[0] = d[1]; d1[1] = d[0]; d1[2] = d[2]; ~~~~~~^~~~~~ fluid.c: In function ‘gfs_cell_corner_interpolator’: fluid.c:3006:13: warning: ‘n[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] FttCell * n[N_CELLS]; ^ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-variable.lo `test -f 'variable.c' || echo './'`variable.c In file included from /usr/include/stdlib.h:24:0, from variable.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-output.lo `test -f 'output.c' || echo './'`output.c In file included from /usr/include/stdlib.h:24:0, from output.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-solid.lo `test -f 'solid.c' || echo './'`solid.c In file included from /usr/include/math.h:26:0, from solid.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-poisson.lo `test -f 'poisson.c' || echo './'`poisson.c In file included from /usr/include/math.h:26:0, from poisson.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-advection.lo `test -f 'advection.c' || echo './'`advection.c In file included from /usr/include/stdlib.h:24:0, from advection.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-boundary.lo `test -f 'boundary.c' || echo './'`boundary.c In file included from /usr/include/stdlib.h:24:0, from boundary.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-mpi_boundary.lo `test -f 'mpi_boundary.c' || echo './'`mpi_boundary.c In file included from /usr/include/stdlib.h:24:0, from mpi_boundary.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mpi_boundary.c: In function ‘gfs_boundary_mpi_init’: mpi_boundary.c:280:5: warning: ‘MPI_Attr_get’ is deprecated: MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0 [-Wdeprecated-declarations] MPI_Attr_get (MPI_COMM_WORLD, MPI_TAG_UB, &tagub, &flag); ^~~~~~~~~~~~ In file included from utils.h:34:0, from boundary.h:24, from domain.h:23, from mpi_boundary.c:24: /usr/lib/openmpi/include/mpi.h:1240:20: note: declared here OMPI_DECLSPEC int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ^~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-timestep.lo `test -f 'timestep.c' || echo './'`timestep.c In file included from /usr/include/math.h:26:0, from timestep.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-domain.lo `test -f 'domain.c' || echo './'`domain.c In file included from /usr/include/math.h:26:0, from domain.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-init.lo `test -f 'init.c' || echo './'`init.c init.c:33:0: warning: "_GNU_SOURCE" redefined # define _GNU_SOURCE :0:0: note: this is the location of the previous definition In file included from /usr/include/fenv.h:25:0, from init.c:34: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ init.c: In function ‘gfs_init’: init.c:416:5: warning: ‘MPI_Errhandler_set’ is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL); ^~~~~~~~~~~~~~~~~~ In file included from utils.h:34:0, from boundary.h:24, from init.c:49: /usr/lib/openmpi/include/mpi.h:1352:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-refine.lo `test -f 'refine.c' || echo './'`refine.c In file included from /usr/include/stdlib.h:24:0, from refine.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-event.lo `test -f 'event.c' || echo './'`event.c In file included from /usr/include/stdlib.h:24:0, from event.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-simulation.lo `test -f 'simulation.c' || echo './'`simulation.c In file included from /usr/include/stdlib.h:24:0, from simulation.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-graphic.lo `test -f 'graphic.c' || echo './'`graphic.c In file included from /usr/include/stdlib.h:24:0, from graphic.c:30: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ graphic.c: In function ‘grow_curve’: graphic.c:1986:17: warning: variable ‘p1’ set but not used [-Wunused-but-set-variable] FttVector p1; ^~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-adaptive.lo `test -f 'adaptive.c' || echo './'`adaptive.c In file included from /usr/include/stdlib.h:24:0, from adaptive.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-source.lo `test -f 'source.c' || echo './'`source.c In file included from /usr/include/stdlib.h:24:0, from source.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-tension.lo `test -f 'tension.c' || echo './'`tension.c In file included from /usr/include/math.h:26:0, from tension.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-vof.lo `test -f 'vof.c' || echo './'`vof.c In file included from /usr/include/math.h:26:0, from vof.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vof.c: In function ‘gfs_height_curvature’: vof.c:2619:11: warning: unused variable ‘area’ [-Wunused-variable] gdouble area = gfs_vof_center (cell, t, &fc); ^~~~ vof.c: In function ‘gfs_height_curvature_new’: vof.c:2871:11: warning: unused variable ‘area’ [-Wunused-variable] gdouble area = gfs_vof_center (cell, GFS_VARIABLE_TRACER_VOF (t), &fc); ^~~~ At top level: vof.c:1771:16: warning: ‘face_value’ defined but not used [-Wunused-function] static gdouble face_value (FttCell * cell, FttDirection d, GfsVariable * v) ^~~~~~~~~~ vof.c:850:13: warning: ‘youngs_normal’ defined but not used [-Wunused-function] static void youngs_normal (FttCell * cell, GfsVariable * v, FttVector * n) ^~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-utils.lo `test -f 'utils.c' || echo './'`utils.c In file included from /usr/include/stdlib.h:24:0, from utils.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-ocean.lo `test -f 'ocean.c' || echo './'`ocean.c In file included from /usr/include/stdlib.h:24:0, from ocean.c:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ocean.c: In function ‘correct_normal_velocity’: ocean.c:45:15: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] FttFaceType type; ^~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-wave.lo `test -f 'wave.c' || echo './'`wave.c In file included from /usr/include/stdlib.h:24:0, from wave.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-levelset.lo `test -f 'levelset.c' || echo './'`levelset.c In file included from /usr/include/stdlib.h:24:0, from levelset.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-cartesian.lo `test -f 'cartesian.c' || echo './'`cartesian.c In file included from /usr/include/stdlib.h:24:0, from cartesian.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-surface.lo `test -f 'surface.c' || echo './'`surface.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from simulation.h:27, from surface.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-unstructured.lo `test -f 'unstructured.c' || echo './'`unstructured.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from unstructured.h:24, from unstructured.c:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-map.lo `test -f 'map.c' || echo './'`map.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from advection.h:27, from timestep.h:27, from variable.h:29, from map.h:27, from map.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ map.c: In function ‘gfs_map_read’: map.c:34:12: warning: variable ‘class_changed’ set but not used [-Wunused-but-set-variable] gboolean class_changed = FALSE; ^~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-river.lo `test -f 'river.c' || echo './'`river.c In file included from /usr/include/stdlib.h:24:0, from river.c:55: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-moving.lo `test -f 'moving.c' || echo './'`moving.c In file included from /usr/include/stdlib.h:24:0, from moving.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from moving.c:49:0: moving2.c: In function ‘second_order_face_fractions’: moving2.c:257:33: warning: variable ‘s1’ set but not used [-Wunused-but-set-variable] gdouble dt1, dt2, dto1, dto2, s1, s2; ^~ moving2.c: In function ‘old_solid_fractions_from_children’: moving2.c:731:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < FTT_CELLS; i++) ^~~ moving2.c:735:7: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ gfs_cell_init_solid_fractions_from_children (cell); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-balance.lo `test -f 'balance.c' || echo './'`balance.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from event.h:27, from balance.h:27, from balance.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-metric.lo `test -f 'metric.c' || echo './'`metric.c In file included from /usr/include/stdlib.h:24:0, from metric.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ metric.c:241:15: warning: ‘kpu_2d_l4’ defined but not used [-Wunused-variable] static double kpu_2d_l4[17][3] = { ^~~~~~~~~ metric.c:221:15: warning: ‘kpu_2d_l2’ defined but not used [-Wunused-variable] static double kpu_2d_l2[5][3] = { ^~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libgfs2D_la-particle.lo `test -f 'particle.c' || echo './'`particle.c In file included from /usr/include/stdlib.h:24:0, from particle.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -o libgfs2D.la -rpath /usr/lib/aarch64-linux-gnu libgfs2D_la-ftt.lo libgfs2D_la-fluid.lo libgfs2D_la-variable.lo libgfs2D_la-output.lo libgfs2D_la-solid.lo libgfs2D_la-poisson.lo libgfs2D_la-advection.lo libgfs2D_la-boundary.lo libgfs2D_la-mpi_boundary.lo libgfs2D_la-timestep.lo libgfs2D_la-domain.lo libgfs2D_la-init.lo libgfs2D_la-refine.lo libgfs2D_la-event.lo libgfs2D_la-simulation.lo libgfs2D_la-graphic.lo libgfs2D_la-adaptive.lo libgfs2D_la-source.lo libgfs2D_la-tension.lo libgfs2D_la-vof.lo libgfs2D_la-utils.lo libgfs2D_la-ocean.lo libgfs2D_la-wave.lo libgfs2D_la-levelset.lo libgfs2D_la-cartesian.lo libgfs2D_la-surface.lo libgfs2D_la-unstructured.lo libgfs2D_la-map.lo libgfs2D_la-river.lo libgfs2D_la-moving.lo libgfs2D_la-balance.lo libgfs2D_la-metric.lo libgfs2D_la-particle.lo -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ftt.lo ftt.c In file included from /usr/include/stdlib.h:24:0, from ftt.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o fluid.lo fluid.c In file included from /usr/include/math.h:26:0, from fluid.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fluid.c: In function ‘gfs_cell_coarse_fine’: fluid.c:1918:42: warning: unused variable ‘gz4’ [-Wunused-variable] double gz3 = g.z*(a[3] + a[7])/sa, gz4 = - g.z*(a[1] + a[5])/sa; ^~~ fluid.c:1918:14: warning: unused variable ‘gz3’ [-Wunused-variable] double gz3 = g.z*(a[3] + a[7])/sa, gz4 = - g.z*(a[1] + a[5])/sa; ^~~ fluid.c:1916:42: warning: unused variable ‘gy4’ [-Wunused-variable] double gy3 = g.y*(a[6] + a[7])/sa, gy4 = - g.y*(a[4] + a[5])/sa; ^~~ fluid.c:1916:14: warning: unused variable ‘gy3’ [-Wunused-variable] double gy3 = g.y*(a[6] + a[7])/sa, gy4 = - g.y*(a[4] + a[5])/sa; ^~~ fluid.c:1914:42: warning: unused variable ‘gx4’ [-Wunused-variable] double gx3 = g.x*(a[4] + a[6])/sa, gx4 = - g.x*(a[5] + a[7])/sa; ^~~ fluid.c:1914:14: warning: unused variable ‘gx3’ [-Wunused-variable] double gx3 = g.x*(a[4] + a[6])/sa, gx4 = - g.x*(a[5] + a[7])/sa; ^~~ fluid.c: In function ‘gfs_cell_corner_interpolator’: fluid.c:3006:13: warning: ‘n[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] FttCell * n[N_CELLS]; ^ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o variable.lo variable.c In file included from /usr/include/stdlib.h:24:0, from variable.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o output.lo output.c In file included from /usr/include/stdlib.h:24:0, from output.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o solid.lo solid.c In file included from /usr/include/math.h:26:0, from solid.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ solid.c: In function ‘set_solid_fractions_from_surface’: solid.c:561:21: warning: comparison between ‘FttComponent {aka enum }’ and ‘enum ’ [-Wenum-compare] for (c = 1; c < FTT_NEIGHBORS; c++) ^ In file included from solid.c:338:0: At top level: isocube.h:95:21: warning: ‘corner’ defined but not used [-Wunused-variable] static FttDirection corner[8][3] = { ^~~~~~ isocube.h:66:18: warning: ‘cvertex’ defined but not used [-Wunused-variable] static FttVector cvertex[8] = { ^~~~~~~ isocube.h:52:14: warning: ‘connectv’ defined but not used [-Wunused-variable] static guint connectv[12][2][4] = { ^~~~~~~~ isocube.h:47:18: warning: ‘edge’ defined but not used [-Wunused-variable] static FttVector edge[12][2] = { ^~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o poisson.lo poisson.c In file included from /usr/include/math.h:26:0, from poisson.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o advection.lo advection.c In file included from /usr/include/stdlib.h:24:0, from advection.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o boundary.lo boundary.c In file included from /usr/include/stdlib.h:24:0, from boundary.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o mpi_boundary.lo mpi_boundary.c In file included from /usr/include/stdlib.h:24:0, from mpi_boundary.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mpi_boundary.c: In function ‘gfs_boundary_mpi_init’: mpi_boundary.c:280:5: warning: ‘MPI_Attr_get’ is deprecated: MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0 [-Wdeprecated-declarations] MPI_Attr_get (MPI_COMM_WORLD, MPI_TAG_UB, &tagub, &flag); ^~~~~~~~~~~~ In file included from utils.h:34:0, from boundary.h:24, from domain.h:23, from mpi_boundary.c:24: /usr/lib/openmpi/include/mpi.h:1240:20: note: declared here OMPI_DECLSPEC int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) ^~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o timestep.lo timestep.c In file included from /usr/include/math.h:26:0, from timestep.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o domain.lo domain.c In file included from /usr/include/math.h:26:0, from domain.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o init.lo init.c init.c:33:0: warning: "_GNU_SOURCE" redefined # define _GNU_SOURCE :0:0: note: this is the location of the previous definition In file included from /usr/include/fenv.h:25:0, from init.c:34: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ init.c: In function ‘gfs_init’: init.c:416:5: warning: ‘MPI_Errhandler_set’ is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL); ^~~~~~~~~~~~~~~~~~ In file included from utils.h:34:0, from boundary.h:24, from init.c:49: /usr/lib/openmpi/include/mpi.h:1352:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o refine.lo refine.c In file included from /usr/include/stdlib.h:24:0, from refine.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o event.lo event.c In file included from /usr/include/stdlib.h:24:0, from event.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o simulation.lo simulation.c In file included from /usr/include/stdlib.h:24:0, from simulation.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o graphic.lo graphic.c In file included from /usr/include/stdlib.h:24:0, from graphic.c:30: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from graphic.c:42:0: isocube.h:66:18: warning: ‘cvertex’ defined but not used [-Wunused-variable] static FttVector cvertex[8] = { ^~~~~~~ isocube.h:52:14: warning: ‘connectv’ defined but not used [-Wunused-variable] static guint connectv[12][2][4] = { ^~~~~~~~ isocube.h:39:14: warning: ‘face_v’ defined but not used [-Wunused-variable] static guint face_v[6][4] = { ^~~~~~ isocube.h:31:14: warning: ‘face’ defined but not used [-Wunused-variable] static guint face[6][4][2] = { ^~~~ isocube.h:27:18: warning: ‘vertex’ defined but not used [-Wunused-variable] static FttVector vertex[8] = { ^~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o adaptive.lo adaptive.c In file included from /usr/include/stdlib.h:24:0, from adaptive.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o source.lo source.c In file included from /usr/include/stdlib.h:24:0, from source.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o tension.lo tension.c In file included from /usr/include/math.h:26:0, from tension.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o vof.lo vof.c In file included from /usr/include/math.h:26:0, from vof.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ vof.c:2682:13: warning: ‘curvature_from_h’ defined but not used [-Wunused-function] static void curvature_from_h (FttCell * cell, GfsDomain * domain, ^~~~~~~~~~~~~~~~ vof.c:2646:16: warning: ‘neighboring_column’ defined but not used [-Wunused-function] static gdouble neighboring_column (FttCell * cell, ^~~~~~~~~~~~~~~~~~ vof.c:1771:16: warning: ‘face_value’ defined but not used [-Wunused-function] static gdouble face_value (FttCell * cell, FttDirection d, GfsVariable * v) ^~~~~~~~~~ vof.c:850:13: warning: ‘youngs_normal’ defined but not used [-Wunused-function] static void youngs_normal (FttCell * cell, GfsVariable * v, FttVector * n) ^~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o utils.lo utils.c In file included from /usr/include/stdlib.h:24:0, from utils.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ocean.lo ocean.c In file included from /usr/include/stdlib.h:24:0, from ocean.c:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ocean.c: In function ‘correct_normal_velocity’: ocean.c:45:15: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] FttFaceType type; ^~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o wave.lo wave.c In file included from /usr/include/stdlib.h:24:0, from wave.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o levelset.lo levelset.c In file included from /usr/include/stdlib.h:24:0, from levelset.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o cartesian.lo cartesian.c In file included from /usr/include/stdlib.h:24:0, from cartesian.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o surface.lo surface.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from simulation.h:27, from surface.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o unstructured.lo unstructured.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from unstructured.h:24, from unstructured.c:24: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o map.lo map.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from fluid.h:23, from boundary.h:23, from domain.h:23, from advection.h:27, from timestep.h:27, from variable.h:29, from map.h:27, from map.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ map.c: In function ‘gfs_map_read’: map.c:34:12: warning: variable ‘class_changed’ set but not used [-Wunused-but-set-variable] gboolean class_changed = FALSE; ^~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o river.lo river.c In file included from /usr/include/stdlib.h:24:0, from river.c:55: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o moving.lo moving.c In file included from /usr/include/stdlib.h:24:0, from moving.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from moving.c:49:0: moving2.c: In function ‘second_order_face_fractions’: moving2.c:257:33: warning: variable ‘s1’ set but not used [-Wunused-but-set-variable] gdouble dt1, dt2, dto1, dto2, s1, s2; ^~ moving2.c: In function ‘old_solid_fractions_from_children’: moving2.c:731:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < FTT_CELLS; i++) ^~~ moving2.c:735:7: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ gfs_cell_init_solid_fractions_from_children (cell); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o balance.lo balance.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from event.h:27, from balance.h:27, from balance.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o metric.lo metric.c In file included from /usr/include/stdlib.h:24:0, from metric.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ metric.c:241:15: warning: ‘kpu_2d_l4’ defined but not used [-Wunused-variable] static double kpu_2d_l4[17][3] = { ^~~~~~~~~ metric.c:221:15: warning: ‘kpu_2d_l2’ defined but not used [-Wunused-variable] static double kpu_2d_l2[5][3] = { ^~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o particle.lo particle.c In file included from /usr/include/stdlib.h:24:0, from particle.c:23: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -o libgfs3D.la -rpath /usr/lib/aarch64-linux-gnu ftt.lo fluid.lo variable.lo output.lo solid.lo poisson.lo advection.lo boundary.lo mpi_boundary.lo timestep.lo domain.lo init.lo refine.lo event.lo simulation.lo graphic.lo adaptive.lo source.lo tension.lo vof.lo utils.lo ocean.lo wave.lo levelset.lo cartesian.lo surface.lo unstructured.lo map.lo river.lo moving.lo balance.lo metric.lo particle.lo -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gerris2D-gerris.o `test -f 'gerris.c' || echo './'`gerris.c In file included from /usr/include/stdlib.h:24:0, from gerris.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gerris2D gerris2D-gerris.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/include -DG_LOG_DOMAIN=\"Gfs\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -DGFS_DATA_DIR=\"/usr/share/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gerris.o gerris.c In file included from /usr/include/stdlib.h:24:0, from gerris.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gerris3D gerris.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 make[4]: Leaving directory '/<>/gerris-20131206+dfsg/src' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/src' Making all in modules make[3]: Entering directory '/<>/gerris-20131206+dfsg/modules' Making all in RStarTree make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/RStarTree' /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RStarTree.lo `test -f 'RStarTree.c' || echo './'`RStarTree.c In file included from /usr/include/stdlib.h:24:0, from RStarTree.c:3: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInstDel.lo `test -f 'RSTInstDel.c' || echo './'`RSTInstDel.c In file included from /usr/include/aarch64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTInstDel.c:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ RSTInstDel.c: In function ‘SplitAndDistributData’: RSTInstDel.c:748:7: warning: ‘axisindex’ may be used uninitialized in this function [-Wmaybe-uninitialized] axisindex; ^~~~~~~~~ RSTInstDel.c:971:6: warning: ‘axis’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (axis != (*par).maxdim || axsortside != currsortside) { ^ RSTInstDel.c:744:32: warning: ‘axsortside’ may be used uninitialized in this function [-Wmaybe-uninitialized] Side sortside, currsortside, axsortside; ^~~~~~~~~~ RSTInstDel.c:940:16: warning: ‘backvalvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (value < backvalvalue) { ^ RSTInstDel.c:952:8: warning: ‘validvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (backvalvalue <= validvalue) { ^ RSTInstDel.c:938:24: warning: ‘backvaledge’ may be used uninitialized in this function [-Wmaybe-uninitialized] backvaledge= backvaledge+edge; ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ RSTInstDel.c:956:14: warning: ‘validedge’ may be used uninitialized in this function [-Wmaybe-uninitialized] validedge= validedge+backvaledge; ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ RSTInstDel.c: In function ‘SplitAndDistributDir’: RSTInstDel.c:482:7: warning: ‘axisindex’ may be used uninitialized in this function [-Wmaybe-uninitialized] axisindex; ^~~~~~~~~ RSTInstDel.c:705:6: warning: ‘axis’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (axis != (*par).maxdim || axsortside != currsortside) { ^ RSTInstDel.c:478:32: warning: ‘axsortside’ may be used uninitialized in this function [-Wmaybe-uninitialized] Side sortside, currsortside, axsortside; ^~~~~~~~~~ RSTInstDel.c:674:16: warning: ‘backvalvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (value < backvalvalue) { ^ RSTInstDel.c:686:8: warning: ‘validvalue’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (backvalvalue <= validvalue) { ^ RSTInstDel.c:672:24: warning: ‘backvaledge’ may be used uninitialized in this function [-Wmaybe-uninitialized] backvaledge= backvaledge+edge; ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ RSTInstDel.c:690:14: warning: ‘validedge’ may be used uninitialized in this function [-Wmaybe-uninitialized] validedge= validedge+backvaledge; ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTJoin.lo `test -f 'RSTJoin.c' || echo './'`RSTJoin.c In file included from /usr/include/aarch64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTJoin.c:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTUtil.lo `test -f 'RSTUtil.c' || echo './'`RSTUtil.c In file included from /usr/include/aarch64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTUtil.c:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ RSTUtil.c: In function ‘Covers’: RSTUtil.c:204:7: warning: variable ‘maxdim’ set but not used [-Wunused-but-set-variable] int maxdim; ^~~~~~ RSTUtil.c: In function ‘ChooseSubtree’: RSTUtil.c:546:16: warning: variable ‘inv’ set but not used [-Wunused-but-set-variable] int maxexam, inv; ^~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInOut.lo `test -f 'RSTInOut.c' || echo './'`RSTInOut.c In file included from /usr/include/aarch64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTInOut.c:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTInterUtil.lo `test -f 'RSTInterUtil.c' || echo './'`RSTInterUtil.c In file included from /usr/include/aarch64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTInterUtil.c:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ RSTInterUtil.c: In function ‘SetCheckDir’: RSTInterUtil.c:208:7: warning: variable ‘PACKEDSIZE_DIRnofentries’ set but not used [-Wunused-but-set-variable] PACKEDSIZE_DIRnofentries, REALSIZE_DIRnofentries; ^~~~~~~~~~~~~~~~~~~~~~~~ RSTInterUtil.c:207:7: warning: variable ‘PACKEDdirentrylen’ set but not used [-Wunused-but-set-variable] PACKEDdirentrylen, REALdirentrylen, ^~~~~~~~~~~~~~~~~ RSTInterUtil.c: In function ‘SetCheckData’: RSTInterUtil.c:350:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] fprintf(stderr,"%s %d\n"," Expecting:",sizeof(typinfo)); ^ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libcSmRST_la-RSTQuery.lo `test -f 'RSTQuery.c' || echo './'`RSTQuery.c In file included from /usr/include/aarch64-linux-gnu/sys/file.h:21:0, from RStarTree.h:28, from RSTQuery.c:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libcSmRST.la libcSmRST_la-RStarTree.lo libcSmRST_la-RSTInstDel.lo libcSmRST_la-RSTJoin.lo libcSmRST_la-RSTUtil.lo libcSmRST_la-RSTInOut.lo libcSmRST_la-RSTInterUtil.lo libcSmRST_la-RSTQuery.lo ar: `u' modifier ignored since `D' is the default (see `U') make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/RStarTree' Making all in kdt make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/kdt' /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libkdt_la-kdt.lo `test -f 'kdt.c' || echo './'`kdt.c In file included from /usr/include/stdlib.h:24:0, from kdt.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ kdt.c:450:13: warning: ‘kdt_rect_write’ defined but not used [-Wunused-function] static void kdt_rect_write (const KdtRect rect, FILE * fp) ^~~~~~~~~~~~~~ kdt.c:252:13: warning: ‘kdt_write’ defined but not used [-Wunused-function] static void kdt_write (KdtHeap * h, FILE * fp) ^~~~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libkdt.la libkdt_la-kdt.lo ar: `u' modifier ignored since `D' is the default (see `U') mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o xyz2kdt-xyz2kdt.o `test -f 'xyz2kdt.c' || echo './'`xyz2kdt.c In file included from /usr/include/stdlib.h:24:0, from xyz2kdt.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o xyz2kdt xyz2kdt-xyz2kdt.o -lkdt -lm mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o kdt2kdt-kdt2kdt.o `test -f 'kdt2kdt.c' || echo './'`kdt2kdt.c In file included from /usr/include/stdlib.h:24:0, from kdt2kdt.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o kdt2kdt kdt2kdt-kdt2kdt.o -lkdt -lm mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o kdtquery-kdtquery.o `test -f 'kdtquery.c' || echo './'`kdtquery.c In file included from /usr/include/stdlib.h:24:0, from kdtquery.c:21: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o kdtquery kdtquery-kdtquery.o -lkdt -lm make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/kdt' Making all in fes2004 make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/fes2004' /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_alloc.lo `test -f 'fes2004_alloc.c' || echo './'`fes2004_alloc.c In file included from /usr/include/stdio.h:27:0, from fes2004_lib.h:12, from fes2004_alloc.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_error.lo `test -f 'fes2004_error.c' || echo './'`fes2004_error.c In file included from /usr/include/stdio.h:27:0, from fes2004_error.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fes2004_error.c:4:6: warning: no previous prototype for ‘print_error_1’ [-Wmissing-prototypes] void print_error_1() ^~~~~~~~~~~~~ fes2004_error.c:11:6: warning: no previous prototype for ‘print_error_2’ [-Wmissing-prototypes] void print_error_2() ^~~~~~~~~~~~~ fes2004_error.c:18:6: warning: no previous prototype for ‘print_error_3’ [-Wmissing-prototypes] void print_error_3(char *message) ^~~~~~~~~~~~~ fes2004_error.c:25:6: warning: no previous prototype for ‘print_error_4’ [-Wmissing-prototypes] void print_error_4(char *message) ^~~~~~~~~~~~~ fes2004_error.c:32:6: warning: no previous prototype for ‘print_error_5’ [-Wmissing-prototypes] void print_error_5(char *message) ^~~~~~~~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_extraction.lo `test -f 'fes2004_extraction.c' || echo './'`fes2004_extraction.c In file included from /usr/include/stdio.h:27:0, from fes2004_lib.h:12, from fes2004_extraction.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_init.lo `test -f 'fes2004_init.c' || echo './'`fes2004_init.c In file included from /usr/include/stdio.h:27:0, from fes2004_lib.h:12, from fes2004_init.c:2: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fes2004_init.c: In function ‘init_spectrum’: fes2004_init.c:42:7: warning: variable ‘rstatus’ set but not used [-Wunused-but-set-variable] int rstatus; ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_io.lo `test -f 'fes2004_io.c' || echo './'`fes2004_io.c In file included from /usr/include/errno.h:28:0, from /usr/include/netcdf.h:16, from fes2004_io.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fes2004_io.c: In function ‘load_netcdf_fes2004_data’: fes2004_io.c:16:9: warning: variable ‘rstatus’ set but not used [-Wunused-but-set-variable] int i,rstatus; ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_prediction.lo `test -f 'fes2004_prediction.c' || echo './'`fes2004_prediction.c In file included from /usr/include/stdio.h:27:0, from fes2004_lib.h:12, from fes2004_prediction.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libfes_la-fes2004_kernel.lo `test -f 'fes2004_kernel.c' || echo './'`fes2004_kernel.c In file included from /usr/include/errno.h:28:0, from /usr/include/netcdf.h:16, from fes2004_kernel.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ fes2004_kernel.c: In function ‘pred_coeur’: fes2004_kernel.c:115:10: warning: variable ‘pi’ set but not used [-Wunused-but-set-variable] double pi; ^~ fes2004_kernel.c: In function ‘extract_coeur’: fes2004_kernel.c:191:10: warning: variable ‘pi’ set but not used [-Wunused-but-set-variable] double pi; ^~ fes2004_kernel.c: In function ‘compute_admittance’: fes2004_kernel.c:457:11: warning: variable ‘gsl_out’ set but not used [-Wunused-but-set-variable] int i,n,gsl_out; ^~~~~~~ fes2004_kernel.c: In function ‘astronomic_angle’: fes2004_kernel.c:663:16: warning: variable ‘sin2I’ set but not used [-Wunused-but-set-variable] double t2,t4,sin2I,s2; ^~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libfes.la libfes_la-fes2004_alloc.lo libfes_la-fes2004_error.lo libfes_la-fes2004_extraction.lo libfes_la-fes2004_init.lo libfes_la-fes2004_io.lo libfes_la-fes2004_prediction.lo libfes_la-fes2004_kernel.lo ar: `u' modifier ignored since `D' is the default (see `U') make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/fes2004' Making all in wavewatch make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/wavewatch' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/wavewatch' Making all in culvert make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/culvert' /bin/bash ../../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libboyd87_la-boyd87.lo `test -f 'boyd87.c' || echo './'`boyd87.c In file included from /usr/include/math.h:26:0, from boyd87.c:9: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libboyd87.la libboyd87_la-boyd87.lo ar: `u' modifier ignored since `D' is the default (see `U') mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o check_inlet-check_inlet.o `test -f 'check_inlet.c' || echo './'`check_inlet.c In file included from /usr/include/stdio.h:27:0, from check_inlet.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o check_inlet check_inlet-check_inlet.o -lboyd87 -lm mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o check_outlet-check_outlet.o `test -f 'check_outlet.c' || echo './'`check_outlet.c In file included from /usr/include/stdio.h:27:0, from check_outlet.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o check_outlet check_outlet-check_outlet.o -lboyd87 -lm mpicc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o discharge_table-discharge_table.o `test -f 'discharge_table.c' || echo './'`discharge_table.c In file included from /usr/include/stdio.h:27:0, from discharge_table.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o discharge_table discharge_table-discharge_table.o -lboyd87 -lm make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/culvert' make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules' /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulatecommon2D_la-particulatecommon.lo `test -f 'particulatecommon.c' || echo './'`particulatecommon.c In file included from /usr/include/stdlib.h:24:0, from particulatecommon.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libparticulatecommon2D.la libparticulatecommon2D_la-particulatecommon.lo libtool: warning: '-version-info/-version-number' is ignored for convenience libraries libtool: warning: '-release' is ignored for convenience libraries ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulatecommon3D_la-particulatecommon.lo `test -f 'particulatecommon.c' || echo './'`particulatecommon.c In file included from /usr/include/stdlib.h:24:0, from particulatecommon.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libparticulatecommon3D.la libparticulatecommon3D_la-particulatecommon.lo libtool: warning: '-version-info/-version-number' is ignored for convenience libraries libtool: warning: '-release' is ignored for convenience libraries ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libterrain2D_la-terrain.lo `test -f 'terrain.c' || echo './'`terrain.c In file included from /usr/include/stdlib.h:24:0, from terrain.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libterrain2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libterrain2D_la-terrain.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lkdt -lkdt -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o terrain.lo terrain.c In file included from /usr/include/stdlib.h:24:0, from terrain.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libterrain3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris terrain.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lkdt -lkdt -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulates2D_la-particulates.lo `test -f 'particulates.c' || echo './'`particulates.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/particle.h:27, from particulatecommon.h:20, from particulates.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libparticulates2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libparticulates2D_la-particulates.lo libparticulatecommon2D.la ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libparticulates3D_la-particulates.lo `test -f 'particulates.c' || echo './'`particulates.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/particle.h:27, from particulatecommon.h:20, from particulates.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libparticulates3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libparticulates3D_la-particulates.lo libparticulatecommon3D.la ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libokada2D_la-okada.lo `test -f 'okada.c' || echo './'`okada.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/event.h:27, from okada.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libokada2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libokada2D_la-okada.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libokada3D_la-okada.lo `test -f 'okada.c' || echo './'`okada.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/event.h:27, from okada.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libokada3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libokada3D_la-okada.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libdf33D_la-df3.lo `test -f 'df3.c' || echo './'`df3.c In file included from /usr/include/stdlib.h:24:0, from df3.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libdf33D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libdf33D_la-df3.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libelectrohydro2D_la-electrohydro.lo `test -f 'electrohydro.c' || echo './'`electrohydro.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from electrohydro.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libelectrohydro2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libelectrohydro2D_la-electrohydro.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libelectrohydro3D_la-electrohydro.lo `test -f 'electrohydro.c' || echo './'`electrohydro.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from electrohydro.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libelectrohydro3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libelectrohydro3D_la-electrohydro.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libskewsymmetric2D_la-skewsymmetric.lo `test -f 'skewsymmetric.c' || echo './'`skewsymmetric.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from skewsymmetric.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ skewsymmetric.c: In function ‘gfs_skew_symmetric_run’: skewsymmetric.c:591:23: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION]; ^~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libskewsymmetric2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libskewsymmetric2D_la-skewsymmetric.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libskewsymmetric3D_la-skewsymmetric.lo `test -f 'skewsymmetric.c' || echo './'`skewsymmetric.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from skewsymmetric.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ skewsymmetric.c: In function ‘gfs_skew_symmetric_run’: skewsymmetric.c:591:23: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] GfsVariable * p, * res = NULL, * gmac[FTT_DIMENSION]; ^~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libskewsymmetric3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libskewsymmetric3D_la-skewsymmetric.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtopics2D_la-topics.lo `test -f 'topics.c' || echo './'`topics.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/solid.h:23, from topics.c:21: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from ../src/timestep.h:29:0, from ../src/simulation.h:28, from ../src/event.h:53, from ../src/solid.h:26, from topics.c:21: topics.c: In function ‘print_interface’: topics.c:1139:38: warning: array subscript is above array bounds [-Warray-bounds] double nz = GFS_VALUE(cell, tv->m[2]); ../src/variable.h:76:74: note: in definition of macro ‘GFS_VALUE’ #define GFS_VALUE(cell,v) ((&GFS_STATE (cell)->place_holder)[(v)->i]) ^ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libtopics2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libtopics2D_la-topics.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtopics3D_la-topics.lo `test -f 'topics.c' || echo './'`topics.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/solid.h:23, from topics.c:21: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libtopics3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libtopics3D_la-topics.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libculvert2D_la-culvert.lo `test -f 'culvert.c' || echo './'`culvert.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/source.h:27, from ../src/river.h:27, from culvert.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libculvert2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libculvert2D_la-culvert.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lculvert -lboyd87 -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o liblayered2D_la-layered.lo `test -f 'layered.c' || echo './'`layered.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/fluid.h:23, from ../src/boundary.h:23, from ../src/domain.h:23, from ../src/simulation.h:27, from layered.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o liblayered2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris liblayered2D_la-layered.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtide2D_la-tide.lo `test -f 'tide.c' || echo './'`tide.c In file included from /usr/include/string.h:25:0, from tide.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libtide2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libtide2D_la-tide.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lfes2004 -lfes -lnetcdf -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libtide3D_la-tide.lo `test -f 'tide.c' || echo './'`tide.c In file included from /usr/include/string.h:25:0, from tide.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libtide3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libtide3D_la-tide.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -Lfes2004 -lfes -lnetcdf -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libstokes2D_la-stokes.lo `test -f 'stokes.c' || echo './'`stokes.c In file included from /usr/include/stdlib.h:24:0, from stokes.c:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=F77 --mode=compile f77 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -c -o CW263.lo CW263.f /bin/bash ../libtool --silent --tag=F77 --mode=link f77 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libstokes2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libstokes2D_la-stokes.lo CW263.lo ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libstokes3D_la-stokes.lo `test -f 'stokes.c' || echo './'`stokes.c In file included from /usr/include/stdlib.h:24:0, from stokes.c:19: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=F77 --mode=link f77 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libstokes3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libstokes3D_la-stokes.lo CW263.lo ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libbubbles2D_la-bubbles.lo `test -f 'bubbles.c' || echo './'`bubbles.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/particle.h:27, from particulatecommon.h:20, from bubbles.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ bubbles.c: In function ‘bubble_fraction_init’: bubbles.c:421:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] GFS_PARTICULATE_FIELD (v)->voidfraction_func = voidfraction_from_bubbles; ^ bubbles.c: In function ‘bubble_fraction_dt_init’: bubbles.c:474:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] GFS_PARTICULATE_FIELD (o)->voidfraction_func = dVpdt_from_particles; ^ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libbubbles2D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libbubbles2D_la-bubbles.lo libparticulatecommon2D.la ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm ar: `u' modifier ignored since `D' is the default (see `U') /bin/bash ../libtool --silent --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o libbubbles3D_la-bubbles.lo `test -f 'bubbles.c' || echo './'`bubbles.c In file included from /usr/include/stdio.h:27:0, from /usr/include/gts.h:23, from ../src/event.h:27, from ../src/particle.h:27, from particulatecommon.h:20, from bubbles.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ bubbles.c: In function ‘bubble_fraction_init’: bubbles.c:421:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] GFS_PARTICULATE_FIELD (v)->voidfraction_func = voidfraction_from_bubbles; ^ bubbles.c: In function ‘bubble_fraction_dt_init’: bubbles.c:474:48: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] GFS_PARTICULATE_FIELD (o)->voidfraction_func = dVpdt_from_particles; ^ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -I/usr/include -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o libbubbles3D.la -rpath /usr/lib/aarch64-linux-gnu/gerris libbubbles3D_la-bubbles.lo libparticulatecommon3D.la ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm ar: `u' modifier ignored since `D' is the default (see `U') mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o rsurface2kdt-rsurface2kdt.o `test -f 'rsurface2kdt.c' || echo './'`rsurface2kdt.c In file included from /usr/include/stdlib.h:24:0, from rsurface2kdt.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-modules\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -DGFS_MODULES_DIR=\"/usr/lib/aarch64-linux-gnu/gerris\" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o rsurface2kdt-rsurface.o `test -f 'rsurface.c' || echo './'`rsurface.c In file included from /usr/include/stdio.h:27:0, from rsurface.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -no-undefined -version-info 2:0:0 -release 1.3 -export-dynamic -module -Wl,-Bsymbolic-functions -Wl,-z,relro -o rsurface2kdt rsurface2kdt-rsurface2kdt.o rsurface2kdt-rsurface.o -LRStarTree -lcSmRST -Lkdt -lkdt -lm libtool: warning: '-version-info' is ignored for programs libtool: warning: '-release' is ignored for programs make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/modules' Making all in tools make[3]: Entering directory '/<>/gerris-20131206+dfsg/tools' mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfs2oogl2D-gfs2oogl.o `test -f 'gfs2oogl.c' || echo './'`gfs2oogl.c In file included from /usr/include/math.h:26:0, from gfs2oogl.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gfs2oogl.c: In function ‘main’: gfs2oogl.c:891:7: warning: ‘g_basename’ is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations] streamname = g_strdup (g_basename (optarg)); ^~~~~~~~~~ In file included from /usr/include/glib-2.0/glib.h:48:0, from /usr/include/gts.h:24, from ../src/init.h:23, from gfs2oogl.c:31: /usr/include/glib-2.0/glib/gfileutils.h:168:14: note: declared here const gchar *g_basename (const gchar *file_name); ^~~~~~~~~~ gfs2oogl.c:706:28: warning: variable ‘lines’ set but not used [-Wunused-but-set-variable] gboolean ribbon = FALSE, lines = FALSE, squares = FALSE; ^~~~~ gfs2oogl.c:706:12: warning: variable ‘ribbon’ set but not used [-Wunused-but-set-variable] gboolean ribbon = FALSE, lines = FALSE, squares = FALSE; ^~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gfs2oogl2D gfs2oogl2D-gfs2oogl.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfs2oogl.o gfs2oogl.c In file included from /usr/include/math.h:26:0, from gfs2oogl.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gfs2oogl.c: In function ‘main’: gfs2oogl.c:891:7: warning: ‘g_basename’ is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations] streamname = g_strdup (g_basename (optarg)); ^~~~~~~~~~ In file included from /usr/include/glib-2.0/glib.h:48:0, from /usr/include/gts.h:24, from ../src/init.h:23, from gfs2oogl.c:31: /usr/include/glib-2.0/glib/gfileutils.h:168:14: note: declared here const gchar *g_basename (const gchar *file_name); ^~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gfs2oogl3D gfs2oogl.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o streamanime.o streamanime.c In file included from /usr/include/math.h:26:0, from streamanime.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o streamanime streamanime.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o ppmcombine-ppmcombine.o `test -f 'ppmcombine.c' || echo './'`ppmcombine.c In file included from /usr/include/math.h:26:0, from ppmcombine.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ppmcombine.c: In function ‘main’: ppmcombine.c:36:12: warning: variable ‘verbose’ set but not used [-Wunused-but-set-variable] gboolean verbose = FALSE; ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ppmcombine ppmcombine-ppmcombine.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscompare2D-gfscompare.o `test -f 'gfscompare.c' || echo './'`gfscompare.c In file included from /usr/include/math.h:26:0, from gfscompare.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gfscompare.c: In function ‘main’: gfscompare.c:319:12: warning: variable ‘no_check’ set but not used [-Wunused-but-set-variable] gboolean no_check = FALSE; ^~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gfscompare2D gfscompare2D-gfscompare.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscompare.o gfscompare.c In file included from /usr/include/math.h:26:0, from gfscompare.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gfscompare.c: In function ‘main’: gfscompare.c:319:12: warning: variable ‘no_check’ set but not used [-Wunused-but-set-variable] gboolean no_check = FALSE; ^~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gfscompare3D gfscompare.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscombine2D-gfscombine.o `test -f 'gfscombine.c' || echo './'`gfscombine.c In file included from /usr/include/math.h:26:0, from gfscombine.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gfscombine2D gfscombine2D-gfscombine.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfscombine.o gfscombine.c In file included from /usr/include/math.h:26:0, from gfscombine.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gfscombine3D gfscombine.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfsjoin2D-gfsjoin2.o `test -f 'gfsjoin2.c' || echo './'`gfsjoin2.c In file included from /usr/include/stdlib.h:24:0, from gfsjoin2.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gfsjoin2D gfsjoin2D-gfsjoin2.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o gfsjoin2.o gfsjoin2.c In file included from /usr/include/stdlib.h:24:0, from gfsjoin2.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o gfsjoin3D gfsjoin2.o ../src/libgfs3D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o shapes.o shapes.c In file included from /usr/include/stdlib.h:24:0, from shapes.c:20: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ shapes.c:288:13: warning: ‘surface_add_rectangular_channel_shape’ defined but not used [-Wunused-function] static void surface_add_rectangular_channel_shape (GtsSurface * s, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o shapes shapes.o -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 make[3]: Leaving directory '/<>/gerris-20131206+dfsg/tools' Making all in test make[3]: Entering directory '/<>/gerris-20131206+dfsg/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/gerris-20131206+dfsg/test' Making all in doc make[3]: Entering directory '/<>/gerris-20131206+dfsg/doc' ls ../src/*.[ch] | awk 'BEGIN{print "reference: \\"}{ print "\t" $1 " \\"}' > Makefile.deps Making all in tutorial make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/tutorial' awk -f depend.awk file="tutorial" < tutorial.tex > Makefile.deps make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/tutorial' Making all in examples make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o classes-classes.o `test -f 'classes.c' || echo './'`classes.c In file included from /usr/include/string.h:25:0, from classes.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o classes-init.o `test -f '../../src/init.c' || echo './'`../../src/init.c ../../src/init.c:33:0: warning: "_GNU_SOURCE" redefined # define _GNU_SOURCE :0:0: note: this is the location of the previous definition In file included from /usr/include/fenv.h:25:0, from ../../src/init.c:34: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ../../src/init.c: In function ‘gfs_init’: ../../src/init.c:416:5: warning: ‘MPI_Errhandler_set’ is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL); ^~~~~~~~~~~~~~~~~~ In file included from ../../src/utils.h:34:0, from ../../src/boundary.h:24, from ../../src/init.c:49: /usr/lib/openmpi/include/mpi.h:1352:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o classes classes-classes.o classes-init.o ../../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 mpicc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o modules-modules.o `test -f 'modules.c' || echo './'`modules.c In file included from /usr/include/limits.h:25:0, from /usr/lib/gcc/aarch64-linux-gnu/6/include-fixed/limits.h:168, from /usr/lib/gcc/aarch64-linux-gnu/6/include-fixed/syslimits.h:7, from /usr/lib/gcc/aarch64-linux-gnu/6/include-fixed/limits.h:34, from /usr/lib/aarch64-linux-gnu/glib-2.0/include/glibconfig.h:11, from /usr/include/glib-2.0/glib/gtypes.h:32, from /usr/include/glib-2.0/glib/galloca.h:32, from /usr/include/glib-2.0/glib.h:30, from /usr/include/glib-2.0/gmodule.h:28, from modules.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o modules modules-modules.o ../../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 ./modules ../../modules/*.la /usr/lib/aarch64-linux-gnu/gerris/*.so | LC_ALL=C sort | uniq > modules.list (./classes && sh ./modulesyms.sh ../../modules /usr/lib/aarch64-linux-gnu/gerris) | LC_ALL=C sort > gerris.dic echo "# Language file for source-highlight" > gfs.lang echo "# Generated automatically by classes.c" >> gfs.lang awk '{ printf ("classname = \"%s\"\n", $1) }' < gerris.dic >> gfs.lang echo "include \"/usr/share/source-highlight/cpp.lang\"" >> gfs.lang echo "comment start \"#\"" >> gfs.lang echo "redef preproc = \"C preprocessor command is not compatible with the use of # as comment character in GTS\"" >> gfs.lang echo "(defvar gfs-abbrevs '(" > gfs-keywords.el awk '{ printf ("\"%s\"\n", $1) }' < gerris.dic >> gfs-keywords.el echo ")" >> gfs-keywords.el echo "\"Gerris keywords automatically generated by classes.c.\")" >> gfs-keywords.el echo "(defvar gfs-modules '(" >> gfs-keywords.el awk '{ printf ("\"%s\"\n", $1) }' < modules.list >> gfs-keywords.el echo ")" >> gfs-keywords.el echo "\"Gerris modules automatically generated by modules.c.\")" >> gfs-keywords.el echo "(provide 'gfs-keywords)" >> gfs-keywords.el sh ./gfs.php.sh > gfs.php make all-am make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' Making all in manpages make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/manpages' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/manpages' make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc' mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o autoclass-autoclass.o `test -f 'autoclass.c' || echo './'`autoclass.c In file included from /usr/include/string.h:25:0, from autoclass.c:1: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ autoclass.c: In function ‘main’: autoclass.c:6:21: warning: variable ‘klass’ set but not used [-Wunused-but-set-variable] GtsObjectClass ** klass; ^~~~~ mpicc -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../src -I/usr/include -DG_LOG_DOMAIN=\"Gfs-tools\" -pthread -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -c -o autoclass-init.o `test -f '../src/init.c' || echo './'`../src/init.c ../src/init.c:33:0: warning: "_GNU_SOURCE" redefined # define _GNU_SOURCE :0:0: note: this is the location of the previous definition In file included from /usr/include/fenv.h:25:0, from ../src/init.c:34: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ../src/init.c: In function ‘gfs_init’: ../src/init.c:416:5: warning: ‘MPI_Errhandler_set’ is deprecated: MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0 [-Wdeprecated-declarations] MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_ARE_FATAL); ^~~~~~~~~~~~~~~~~~ In file included from ../src/utils.h:34:0, from ../src/boundary.h:24, from ../src/init.c:49: /usr/lib/openmpi/include/mpi.h:1352:20: note: declared here OMPI_DECLSPEC int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) ^~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --silent --tag=CC --mode=link mpicc -DFTT_2D=1 -g -O2 -fdebug-prefix-map=/<>/gerris-20131206+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_XOPEN_SOURCE=700 -D_BSD_SOURCE -D_GNU_SOURCE -Wall -Werror-implicit-function-declaration -Wmissing-prototypes -Wmissing-declarations -pipe -std=c99 -Wl,-Bsymbolic-functions -Wl,-z,relro -o autoclass autoclass-autoclass.o autoclass-init.o ../src/libgfs2D.la -lgts -lm -lgthread-2.0 -pthread -Wl,--export-dynamic -lgmodule-2.0 -pthread -lglib-2.0 make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/doc' Making all in desktop make[3]: Entering directory '/<>/gerris-20131206+dfsg/desktop' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/gerris-20131206+dfsg/desktop' Making all in debian make[3]: Entering directory '/<>/gerris-20131206+dfsg/debian' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/gerris-20131206+dfsg/debian' make[3]: Entering directory '/<>/gerris-20131206+dfsg' make[3]: Leaving directory '/<>/gerris-20131206+dfsg' make[2]: Leaving directory '/<>/gerris-20131206+dfsg' make[1]: Leaving directory '/<>/gerris-20131206+dfsg' dh_auto_test -a -O--parallel fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel debian/rules override_dh_auto_install make[1]: Entering directory '/<>/gerris-20131206+dfsg' dh_auto_install make -j1 install DESTDIR=/<>/gerris-20131206\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>/gerris-20131206+dfsg' Making install in src make[3]: Entering directory '/<>/gerris-20131206+dfsg/src' make install-am make[4]: Entering directory '/<>/gerris-20131206+dfsg/src' make[5]: Entering directory '/<>/gerris-20131206+dfsg/src' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c libgfs2D.la libgfs3D.la '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c gerris2D gerris3D '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/include' /usr/bin/install -c -m 644 gfs.h '/<>/gerris-20131206+dfsg/debian/tmp/usr/include' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 gerris2D.pc gerris3D.pc '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' /usr/bin/install -c -m 644 m4.awk '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/include/gerris' /usr/bin/install -c -m 644 ftt.h fluid.h variable.h output.h solid.h poisson.h advection.h boundary.h mpi_boundary.h timestep.h domain.h init.h refine.h event.h simulation.h graphic.h adaptive.h source.h tension.h vof.h utils.h ocean.h wave.h levelset.h isocube.h cartesian.h surface.h unstructured.h map.h river.h moving.h balance.h metric.h particle.h version.h spatial.h function.h '/<>/gerris-20131206+dfsg/debian/tmp/usr/include/gerris' make[5]: Leaving directory '/<>/gerris-20131206+dfsg/src' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/src' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/src' Making install in modules make[3]: Entering directory '/<>/gerris-20131206+dfsg/modules' Making install in RStarTree make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/RStarTree' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/RStarTree' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/RStarTree' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/RStarTree' Making install in kdt make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/kdt' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/kdt' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/bash ../../libtool --silent --mode=install /usr/bin/install -c xyz2kdt kdt2kdt kdtquery '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/kdt' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/kdt' Making install in fes2004 make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/fes2004' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/fes2004' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/fes2004' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/fes2004' Making install in wavewatch make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/wavewatch' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/wavewatch' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/wavewatch' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/wavewatch' Making install in culvert make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules/culvert' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules/culvert' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules/culvert' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules/culvert' make[4]: Entering directory '/<>/gerris-20131206+dfsg/modules' make[5]: Entering directory '/<>/gerris-20131206+dfsg/modules' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c rsurface2kdt '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/gerris' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c libterrain2D.la libterrain3D.la libparticulates2D.la libparticulates3D.la libokada2D.la libokada3D.la libdf33D.la libelectrohydro2D.la libelectrohydro3D.la libskewsymmetric2D.la libskewsymmetric3D.la libtopics2D.la libtopics3D.la libculvert2D.la liblayered2D.la libtide2D.la libtide3D.la libstokes2D.la libstokes3D.la libbubbles2D.la libbubbles3D.la '/<>/gerris-20131206+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/gerris' libtool: warning: relinking 'libterrain2D.la' libtool: warning: relinking 'libterrain3D.la' libtool: warning: relinking 'libparticulates2D.la' libtool: warning: relinking 'libparticulates3D.la' libtool: warning: relinking 'libokada2D.la' libtool: warning: relinking 'libokada3D.la' libtool: warning: relinking 'libdf33D.la' libtool: warning: relinking 'libelectrohydro2D.la' libtool: warning: relinking 'libelectrohydro3D.la' libtool: warning: relinking 'libskewsymmetric2D.la' libtool: warning: relinking 'libskewsymmetric3D.la' libtool: warning: relinking 'libtopics2D.la' libtool: warning: relinking 'libtopics3D.la' libtool: warning: relinking 'libculvert2D.la' libtool: warning: relinking 'liblayered2D.la' libtool: warning: relinking 'libtide2D.la' libtool: warning: relinking 'libtide3D.la' libtool: warning: relinking 'libstokes2D.la' libtool: warning: relinking 'libstokes3D.la' libtool: warning: relinking 'libbubbles2D.la' libtool: warning: relinking 'libbubbles3D.la' libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu/gerris' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/modules' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/modules' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/modules' Making install in tools make[3]: Entering directory '/<>/gerris-20131206+dfsg/tools' make[4]: Entering directory '/<>/gerris-20131206+dfsg/tools' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --silent --mode=install /usr/bin/install -c gfs2oogl2D gfs2oogl3D streamanime ppmcombine gfscompare2D gfscompare3D gfscombine2D gfscombine3D gfsjoin2D gfsjoin3D shapes '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs2D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: warning: '../src/libgfs3D.la' has not been installed in '/usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /usr/bin/install -c darcs2dist bat2gts ppm2mpeg ppm2theora ppm2video gfs2gfs gfsjoin gfsplot '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/tools' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/tools' Making install in test make[3]: Entering directory '/<>/gerris-20131206+dfsg/test' make[4]: Entering directory '/<>/gerris-20131206+dfsg/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/test' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/test' Making install in doc make[3]: Entering directory '/<>/gerris-20131206+dfsg/doc' Making install in tutorial make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/tutorial' make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc/tutorial' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc/tutorial' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/tutorial' Making install in examples make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' make install-am make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' make[6]: Entering directory '/<>/gerris-20131206+dfsg/doc/examples' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /usr/bin/install -c gfs2doc gfs-highlight gfsxref '/<>/gerris-20131206+dfsg/debian/tmp/usr/bin' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' /usr/bin/install -c -m 644 gfs2tex.py gfs.lang gerris.dic gfs-keywords.el gfs-mode.el gfs.sty gfs.hva kaltura.sh gfs.php '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' make[6]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/examples' Making install in manpages make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc/manpages' make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc/manpages' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 bat2gts.1 gerris2D.1 gerris3D.1 gfs2gfs.1 gfs2oogl2D.1 gfs2oogl3D.1 gfscompare2D.1 gfscompare3D.1 gfs-config.1 gfs-highlight.1 gfsjoin.1 gfsxref.1 ppm2mpeg.1 ppmcombine.1 rsurfacequery.1 rsurfaceinfo.1 shapes.1 streamanime.1 xyz2rsurface.1 gfsjoin2D.1 gfsjoin3D.1 '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/man/man1' make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc/manpages' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc/manpages' make[4]: Entering directory '/<>/gerris-20131206+dfsg/doc' make[5]: Entering directory '/<>/gerris-20131206+dfsg/doc' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/gerris-20131206+dfsg/doc' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/doc' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/doc' Making install in desktop make[3]: Entering directory '/<>/gerris-20131206+dfsg/desktop' make[4]: Entering directory '/<>/gerris-20131206+dfsg/desktop' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/icons/hicolor/48x48/mimetypes' /usr/bin/install -c -m 644 application-gerris.png application-gerris-2D.png application-gerris-3D.png application-gerris-compressed.png '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/icons/hicolor/48x48/mimetypes' /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/mime/packages' /usr/bin/install -c -m 644 gerris.xml '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/mime/packages' make[4]: Leaving directory '/<>/gerris-20131206+dfsg/desktop' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/desktop' Making install in debian make[3]: Entering directory '/<>/gerris-20131206+dfsg/debian' make[4]: Entering directory '/<>/gerris-20131206+dfsg/debian' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/gerris-20131206+dfsg/debian' make[3]: Leaving directory '/<>/gerris-20131206+dfsg/debian' make[3]: Entering directory '/<>/gerris-20131206+dfsg' make[4]: Entering directory '/<>/gerris-20131206+dfsg' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' /usr/bin/install -c build_function libtool '/<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris' make[4]: Leaving directory '/<>/gerris-20131206+dfsg' make[3]: Leaving directory '/<>/gerris-20131206+dfsg' make[2]: Leaving directory '/<>/gerris-20131206+dfsg' find /<>/gerris-20131206+dfsg/debian/ -name "*.la" | xargs rm -f sed -i -e "s/mpicc/gcc/g" /<>/gerris-20131206+dfsg/debian/tmp/usr/share/gerris/build_function rm -rf /<>/gerris-20131206+dfsg/debian/tmp/usr/bin/darcs2dist rm -rf /<>/gerris-20131206+dfsg/debian/tmp/usr/bin/gfs2doc make[1]: Leaving directory '/<>/gerris-20131206+dfsg' dh_install -a -O--parallel dh_installdocs -a -O--parallel debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/gerris-20131206+dfsg' dh_installchangelogs ChangeLog make[1]: Leaving directory '/<>/gerris-20131206+dfsg' dh_installman -a -O--parallel dh_lintian -a -O--parallel dh_icons -a -O--parallel dh_perl -a -O--parallel dh_link -a -O--parallel dh_strip_nondeterminism -a -O--parallel dh_compress -a -O--parallel dh_fixperms -a -O--parallel dh_strip -a -O--parallel dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: gerris libgfs-1.3-2 libgfs-dev dh_strip debug symbol extraction: packages to act on: gerris libgfs-1.3-2 libgfs-dev dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 libgfs-dev has no unstripped objects, ignoring find: ‘/<>/gerris-20131206+dfsg/debian/libgfs-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /<>/gerris-20131206+dfsg/debian/libgfs-dev-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a -O--parallel dh_shlibdeps -a -O--parallel dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: Depends field of package libgfs-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: gerris libgfs-1.3-2 libgfs-dev dh_gencontrol debug symbol wrapper: packages to act on: gerris libgfs-1.3-2 libgfs-dev dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package gerris (pkgdir debian/gerris, ddeb package dir debian/gerris-dbgsym) dh_gencontrol debug symbol wrapper: building gerris-dbgsym_20131206+dfsg-9build1_arm64.ddeb dpkg-deb: building package 'gerris-dbgsym' in '../gerris-dbgsym_20131206+dfsg-9build1_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile gerris-dbgsym_20131206+dfsg-9build1_arm64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package libgfs-1.3-2 (pkgdir debian/libgfs-1.3-2, ddeb package dir debian/libgfs-1.3-2-dbgsym) dh_gencontrol debug symbol wrapper: building libgfs-1.3-2-dbgsym_20131206+dfsg-9build1_arm64.ddeb dpkg-deb: building package 'libgfs-1.3-2-dbgsym' in '../libgfs-1.3-2-dbgsym_20131206+dfsg-9build1_arm64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile libgfs-1.3-2-dbgsym_20131206+dfsg-9build1_arm64.ddeb devel extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: no debian/libgfs-dev-dbgsym, skipping package libgfs-dev dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel INFO: pkgstriptranslations version 131 pkgstriptranslations: processing gerris (in debian/gerris); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/gerris/DEBIAN/control, package gerris, directory debian/gerris .. removing usr/share/doc/gerris/changelog.gz Searching for duplicated docs in dependency libgfs-1.3-2... symlinking changelog.Debian.gz in gerris to file in libgfs-1.3-2 pkgstripfiles: Running PNG optimization (using 1 cpus) for package gerris ... oooo pkgstripfiles: PNG optimization (4/0) for package gerris took 1 s dpkg-deb: building package 'gerris' in '../gerris_20131206+dfsg-9build1_arm64.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libgfs-1.3-2 (in debian/libgfs-1.3-2); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libgfs-1.3-2/DEBIAN/control, package libgfs-1.3-2, directory debian/libgfs-1.3-2 .. removing usr/share/doc/libgfs-1.3-2/changelog.gz pkgstripfiles: Truncating usr/share/doc/libgfs-1.3-2/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 1 cpus) for package libgfs-1.3-2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgfs-1.3-2' in '../libgfs-1.3-2_20131206+dfsg-9build1_arm64.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libgfs-dev (in debian/libgfs-dev); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libgfs-dev/DEBIAN/control, package libgfs-dev, directory debian/libgfs-dev .. removing usr/share/doc/libgfs-dev/changelog.gz Searching for duplicated docs in dependency libgfs-1.3-2... symlinking changelog.Debian.gz in libgfs-dev to file in libgfs-1.3-2 pkgstripfiles: Running PNG optimization (using 1 cpus) for package libgfs-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgfs-dev' in '../libgfs-dev_20131206+dfsg-9build1_arm64.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../gerris_20131206+dfsg-9build1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build gerris-20131206+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161022-0141 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ gerris_20131206+dfsg-9build1_arm64.changes: ------------------------------------------- Format: 1.8 Date: Sat, 22 Oct 2016 01:30:01 +0000 Source: gerris Binary: gerris libgfs-1.3-2 libgfs-dev Architecture: arm64 Version: 20131206+dfsg-9build1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: gerris - Fluid Flow Solver libgfs-1.3-2 - Fluid Flow Solver -- shared libraries libgfs-dev - Fluid Flow Solver -- development libraries and headers Changes: gerris (20131206+dfsg-9build1) zesty; urgency=medium . * No-change rebuild against libopenmpi2 Checksums-Sha1: 787af02f64f002c4bd36d170d379c02a68fd43e2 240996 gerris-dbgsym_20131206+dfsg-9build1_arm64.ddeb f89d0e62899c756e44d0bf57dc4ef57123c60108 206500 gerris_20131206+dfsg-9build1_arm64.deb cea62837d5653084a123ef010bc307374f699396 1244740 libgfs-1.3-2-dbgsym_20131206+dfsg-9build1_arm64.ddeb d19be5d0925536ecfe3333612491e343554bdf9b 365326 libgfs-1.3-2_20131206+dfsg-9build1_arm64.deb 092e480da90b07cba1921227271fd34057b386c7 31668 libgfs-dev_20131206+dfsg-9build1_arm64.deb Checksums-Sha256: e681804901dbf2ebf2cb3d110ea041eed3c4582d7f5646d3a8ab23646bc20451 240996 gerris-dbgsym_20131206+dfsg-9build1_arm64.ddeb 573ef7ae5df07df804ee08ab56e2b8eecc7b0d7f83fdfa854e24a8c746b5ec66 206500 gerris_20131206+dfsg-9build1_arm64.deb ff95646853edcd0efa261f53187ac655183720add1e78dad167c2bfdc99c615b 1244740 libgfs-1.3-2-dbgsym_20131206+dfsg-9build1_arm64.ddeb af35d2564997ba4074f73fe290ad1d52da59dcdf1b0676b5a8badb28be7e10b5 365326 libgfs-1.3-2_20131206+dfsg-9build1_arm64.deb f3ed56331d97d74840325b49c37180d4be1e66eacb1dfd1f2bc932ee1cadcf04 31668 libgfs-dev_20131206+dfsg-9build1_arm64.deb Files: 2628e79af0f1de35f84df9a0bc5cbcc9 240996 science extra gerris-dbgsym_20131206+dfsg-9build1_arm64.ddeb 522bcf6a2e9def906bde422edb6f338d 206500 science optional gerris_20131206+dfsg-9build1_arm64.deb 38bb94b08de9d276dd83d62124ff8fa3 1244740 devel extra libgfs-1.3-2-dbgsym_20131206+dfsg-9build1_arm64.ddeb f351ee99bdf85152302cd73e3c530c7e 365326 devel optional libgfs-1.3-2_20131206+dfsg-9build1_arm64.deb 38c69b7b0db0f2c03df9d3df87332e3c 31668 libdevel optional libgfs-dev_20131206+dfsg-9build1_arm64.deb Original-Maintainer: Debian Science Maintainers +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ gerris_20131206+dfsg-9build1_arm64.deb -------------------------------------- new debian package, version 2.0. size 206500 bytes: control archive=3052 bytes. 1342 bytes, 32 lines control 4383 bytes, 69 lines md5sums 50 bytes, 2 lines shlibs 60 bytes, 2 lines triggers Package: gerris Version: 20131206+dfsg-9build1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 1074 Depends: libc6 (>= 2.17), libgfortran3 (>= 4.6), libgfs-1.3-2, libglib2.0-0 (>= 2.12.0), libgts-0.7-5 (>= 0.7.6), libopenmpi2 Recommends: gfsview Suggests: python Breaks: gerris-mpi (<< 20131206+dfsg-7) Replaces: gerris-mpi (<< 20131206+dfsg-7) Section: science Priority: optional Homepage: http://gfs.sourceforge.net/ Description: Fluid Flow Solver Gerris is a system for the solution of the partial differential equations describing fluid flow. . A brief summary of its main (current) features: . * Solves the time-dependent incompressible variable-density Euler, Stokes or Navier-Stokes equations * Adaptive mesh refinement: the resolution is adapted dynamically to the features of the flow * Entirely automatic mesh generation in complex geometries * Second-order in space and time * Unlimited number of advected/diffused passive tracers * Flexible specification of additional source terms * Portable parallel support using the MPI library * Volume of Fluid advection scheme for interfacial flows . This package has MPI support built in. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2016-10-22 01:30 ./ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/bin/ -rwxr-xr-x root/root 3218 2016-10-22 01:30 ./usr/bin/bat2gts -rwxr-xr-x root/root 23520 2016-10-22 01:30 ./usr/bin/gerris2D -rwxr-xr-x root/root 23520 2016-10-22 01:30 ./usr/bin/gerris3D -rwxr-xr-x root/root 1967 2016-10-22 01:30 ./usr/bin/gfs-highlight -rwxr-xr-x root/root 551 2016-10-22 01:30 ./usr/bin/gfs2gfs -rwxr-xr-x root/root 32376 2016-10-22 01:30 ./usr/bin/gfs2oogl2D -rwxr-xr-x root/root 32392 2016-10-22 01:30 ./usr/bin/gfs2oogl3D -rwxr-xr-x root/root 14632 2016-10-22 01:30 ./usr/bin/gfscombine2D -rwxr-xr-x root/root 14632 2016-10-22 01:30 ./usr/bin/gfscombine3D -rwxr-xr-x root/root 23688 2016-10-22 01:30 ./usr/bin/gfscompare2D -rwxr-xr-x root/root 19344 2016-10-22 01:30 ./usr/bin/gfscompare3D -rwxr-xr-x root/root 5034 2016-10-22 01:30 ./usr/bin/gfsjoin -rwxr-xr-x root/root 10560 2016-10-22 01:30 ./usr/bin/gfsjoin2D -rwxr-xr-x root/root 10560 2016-10-22 01:30 ./usr/bin/gfsjoin3D -rwxr-xr-x root/root 1264 2016-10-22 01:30 ./usr/bin/gfsplot -rwxr-xr-x root/root 1732 2016-10-22 01:30 ./usr/bin/gfsxref -rwxr-xr-x root/root 22896 2016-10-22 01:30 ./usr/bin/kdt2kdt -rwxr-xr-x root/root 22744 2016-10-22 01:30 ./usr/bin/kdtquery -rwxr-xr-x root/root 506 2016-10-22 01:30 ./usr/bin/ppm2mpeg -rwxr-xr-x root/root 505 2016-10-22 01:30 ./usr/bin/ppm2theora -rwxr-xr-x root/root 468 2016-10-22 01:30 ./usr/bin/ppm2video -rwxr-xr-x root/root 10384 2016-10-22 01:30 ./usr/bin/ppmcombine -rwxr-xr-x root/root 63920 2016-10-22 01:30 ./usr/bin/rsurface2kdt -rwxr-xr-x root/root 19056 2016-10-22 01:30 ./usr/bin/shapes -rwxr-xr-x root/root 10488 2016-10-22 01:30 ./usr/bin/streamanime -rwxr-xr-x root/root 22888 2016-10-22 01:30 ./usr/bin/xyz2kdt drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/ lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/libstokes2D-1.3.so.2 -> libstokes2D-1.3.so.2.0.0 -rw-r--r-- root/root 30952 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/libstokes2D-1.3.so.2.0.0 -rw-r--r-- root/root 36440 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/libstokes2D.a lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/libstokes2D.so -> libstokes2D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/libstokes3D-1.3.so.2 -> libstokes3D-1.3.so.2.0.0 -rw-r--r-- root/root 30952 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/libstokes3D-1.3.so.2.0.0 -rw-r--r-- root/root 36440 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/libstokes3D.a lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/gerris/libstokes3D.so -> libstokes3D-1.3.so.2.0.0 drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/gerris/ lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/gerris/gfs2tex.py -> ../../share/gerris/lib/gfs2tex.py lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/gerris/m4.awk -> ../../share/gerris/lib/m4.awk drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/doc/gerris/ -rw-r--r-- root/root 930 2013-12-06 15:51 ./usr/share/doc/gerris/AUTHORS -rw-r--r-- root/root 4362 2013-12-06 15:51 ./usr/share/doc/gerris/NEWS.gz -rw-r--r-- root/root 665 2013-12-06 15:51 ./usr/share/doc/gerris/README -rw-r--r-- root/root 277 2013-12-06 15:51 ./usr/share/doc/gerris/THANKS -rw-r--r-- root/root 1405 2013-12-06 15:51 ./usr/share/doc/gerris/TODO lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/share/doc/gerris/changelog.Debian.gz -> ../libgfs-1.3-2/changelog.Debian.gz -rw-r--r-- root/root 1937 2014-07-31 21:09 ./usr/share/doc/gerris/copyright drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/gerris/ -rwxr-xr-x root/root 851 2016-10-22 01:30 ./usr/share/gerris/build_function -rw-r--r-- root/root 5521 2016-10-22 01:30 ./usr/share/gerris/gerris.dic -rw-r--r-- root/root 6565 2016-10-22 01:30 ./usr/share/gerris/gfs-keywords.el -rw-r--r-- root/root 4732 2016-10-22 01:30 ./usr/share/gerris/gfs-mode.el -rw-r--r-- root/root 545 2016-10-22 01:30 ./usr/share/gerris/gfs.hva -rw-r--r-- root/root 10891 2016-10-22 01:30 ./usr/share/gerris/gfs.lang -rw-r--r-- root/root 10685 2016-10-22 01:30 ./usr/share/gerris/gfs.php -rw-r--r-- root/root 210 2016-10-22 01:30 ./usr/share/gerris/gfs.sty -rw-r--r-- root/root 7148 2016-10-22 01:30 ./usr/share/gerris/gfs2tex.py -rw-r--r-- root/root 387 2016-10-22 01:30 ./usr/share/gerris/kaltura.sh -rwxr-xr-x root/root 348945 2016-10-22 01:30 ./usr/share/gerris/libtool -rw-r--r-- root/root 934 2016-10-22 01:30 ./usr/share/gerris/m4.awk drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/icons/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/icons/hicolor/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/icons/hicolor/48x48/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/icons/hicolor/48x48/mimetypes/ -rw-r--r-- root/root 3360 2016-10-22 01:30 ./usr/share/icons/hicolor/48x48/mimetypes/application-gerris-2D.png -rw-r--r-- root/root 3362 2016-10-22 01:30 ./usr/share/icons/hicolor/48x48/mimetypes/application-gerris-3D.png -rw-r--r-- root/root 3465 2016-10-22 01:30 ./usr/share/icons/hicolor/48x48/mimetypes/application-gerris-compressed.png -rw-r--r-- root/root 3350 2016-10-22 01:30 ./usr/share/icons/hicolor/48x48/mimetypes/application-gerris.png drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/man/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/man/man1/ -rw-r--r-- root/root 665 2016-10-22 01:30 ./usr/share/man/man1/bat2gts.1.gz -rw-r--r-- root/root 747 2016-10-22 01:30 ./usr/share/man/man1/gerris2D.1.gz lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/share/man/man1/gerris3D.1.gz -> gerris2D.1.gz -rw-r--r-- root/root 447 2016-10-22 01:30 ./usr/share/man/man1/gfs-config.1.gz -rw-r--r-- root/root 499 2016-10-22 01:30 ./usr/share/man/man1/gfs-highlight.1.gz -rw-r--r-- root/root 446 2016-10-22 01:30 ./usr/share/man/man1/gfs2gfs.1.gz -rw-r--r-- root/root 1174 2016-10-22 01:30 ./usr/share/man/man1/gfs2oogl2D.1.gz lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/share/man/man1/gfs2oogl3D.1.gz -> gfs2oogl2D.1.gz -rw-r--r-- root/root 1008 2016-10-22 01:30 ./usr/share/man/man1/gfscompare2D.1.gz lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/share/man/man1/gfscompare3D.1.gz -> gfscompare2D.1.gz -rw-r--r-- root/root 383 2016-10-22 01:30 ./usr/share/man/man1/gfsjoin.1.gz -rw-r--r-- root/root 433 2016-10-22 01:30 ./usr/share/man/man1/gfsjoin2D.1.gz -rw-r--r-- root/root 433 2016-10-22 01:30 ./usr/share/man/man1/gfsjoin3D.1.gz -rw-r--r-- root/root 466 2016-10-22 01:30 ./usr/share/man/man1/gfsxref.1.gz lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/share/man/man1/ppm2mpeg.1.gz -> gerris2D.1.gz -rw-r--r-- root/root 488 2016-10-22 01:30 ./usr/share/man/man1/ppmcombine.1.gz -rw-r--r-- root/root 398 2016-10-22 01:30 ./usr/share/man/man1/rsurfaceinfo.1.gz -rw-r--r-- root/root 332 2016-10-22 01:30 ./usr/share/man/man1/rsurfacequery.1.gz -rw-r--r-- root/root 660 2016-10-22 01:30 ./usr/share/man/man1/shapes.1.gz lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/share/man/man1/streamanime.1.gz -> gerris2D.1.gz -rw-r--r-- root/root 554 2016-10-22 01:30 ./usr/share/man/man1/xyz2rsurface.1.gz drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/mime/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/mime/packages/ -rw-r--r-- root/root 1048 2016-10-22 01:30 ./usr/share/mime/packages/gerris.xml libgfs-1.3-2_20131206+dfsg-9build1_arm64.deb -------------------------------------------- new debian package, version 2.0. size 365326 bytes: control archive=926 bytes. 799 bytes, 20 lines control 391 bytes, 5 lines md5sums 56 bytes, 2 lines shlibs 60 bytes, 2 lines triggers Package: libgfs-1.3-2 Source: gerris Version: 20131206+dfsg-9build1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 1513 Depends: libc6 (>= 2.17), libglib2.0-0 (>= 2.30.0), libgts-0.7-5 (>= 0.7.6+darcs121130), libopenmpi2 Breaks: libgfs-mpi-1.3-2 (<< 20131206+dfsg-7) Replaces: libgfs-mpi-1.3-2 (<< 20131206+dfsg-7) Section: devel Priority: optional Homepage: http://gfs.sourceforge.net/ Description: Fluid Flow Solver -- shared libraries Gerris is a system for the solution of the partial differential equations describing fluid flow. . This package contains the shared libraries for libgfs. . This package has MPI support built in. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2016-10-22 01:30 ./ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/libgfs2D-1.3.so.2 -> libgfs2D-1.3.so.2.0.0 -rw-r--r-- root/root 710600 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/libgfs2D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/libgfs3D-1.3.so.2 -> libgfs3D-1.3.so.2.0.0 -rw-r--r-- root/root 749448 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/libgfs3D-1.3.so.2.0.0 drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/doc/libgfs-1.3-2/ -rw-r--r-- root/root 1114 2016-10-22 01:30 ./usr/share/doc/libgfs-1.3-2/changelog.Debian.gz -rw-r--r-- root/root 1937 2014-07-31 21:09 ./usr/share/doc/libgfs-1.3-2/copyright drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/lintian/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 48 2011-04-06 06:12 ./usr/share/lintian/overrides/libgfs-1.3-2 libgfs-dev_20131206+dfsg-9build1_arm64.deb ------------------------------------------ new debian package, version 2.0. size 31668 bytes: control archive=1820 bytes. 833 bytes, 21 lines control 2604 bytes, 41 lines md5sums Package: libgfs-dev Source: gerris Version: 20131206+dfsg-9build1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 319 Depends: libgfs-1.3-2 (= 20131206+dfsg-9build1), libgts-dev, libav-tools Breaks: libgfs-mpi-dev (<< 20131206+dfsg-7) Replaces: libgfs-mpi-dev (<< 20131206+dfsg-7) Section: libdevel Priority: optional Homepage: http://gfs.sourceforge.net/ Description: Fluid Flow Solver -- development libraries and headers Gerris is a system for the solution of the partial differential equations describing fluid flow. . This package contains the headers and development libraries needed to build applications using libgfs. . This package has MPI support built in. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2016-10-22 01:30 ./ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/include/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/include/gerris/ -rw-r--r-- root/root 4867 2016-10-22 01:30 ./usr/include/gerris/adaptive.h -rw-r--r-- root/root 3762 2016-10-22 01:30 ./usr/include/gerris/advection.h -rw-r--r-- root/root 1490 2016-10-22 01:30 ./usr/include/gerris/balance.h -rw-r--r-- root/root 10432 2016-10-22 01:30 ./usr/include/gerris/boundary.h -rw-r--r-- root/root 2105 2016-10-22 01:30 ./usr/include/gerris/cartesian.h -rw-r--r-- root/root 18544 2016-10-22 01:30 ./usr/include/gerris/domain.h -rw-r--r-- root/root 10394 2016-10-22 01:30 ./usr/include/gerris/event.h -rw-r--r-- root/root 11820 2016-10-22 01:30 ./usr/include/gerris/fluid.h -rw-r--r-- root/root 23268 2016-10-22 01:30 ./usr/include/gerris/ftt.h -rw-r--r-- root/root 7232 2016-10-22 01:30 ./usr/include/gerris/function.h -rw-r--r-- root/root 4699 2016-10-22 01:30 ./usr/include/gerris/graphic.h -rw-r--r-- root/root 1649 2016-10-22 01:30 ./usr/include/gerris/init.h -rw-r--r-- root/root 4138 2016-10-22 01:30 ./usr/include/gerris/isocube.h -rw-r--r-- root/root 1638 2016-10-22 01:30 ./usr/include/gerris/levelset.h -rw-r--r-- root/root 3198 2016-10-22 01:30 ./usr/include/gerris/map.h -rw-r--r-- root/root 5078 2016-10-22 01:30 ./usr/include/gerris/metric.h -rw-r--r-- root/root 2675 2016-10-22 01:30 ./usr/include/gerris/moving.h -rw-r--r-- root/root 1892 2016-10-22 01:30 ./usr/include/gerris/mpi_boundary.h -rw-r--r-- root/root 3387 2016-10-22 01:30 ./usr/include/gerris/ocean.h -rw-r--r-- root/root 10027 2016-10-22 01:30 ./usr/include/gerris/output.h -rw-r--r-- root/root 1443 2016-10-22 01:30 ./usr/include/gerris/particle.h -rw-r--r-- root/root 5385 2016-10-22 01:30 ./usr/include/gerris/poisson.h -rw-r--r-- root/root 3333 2016-10-22 01:30 ./usr/include/gerris/refine.h -rw-r--r-- root/root 3990 2016-10-22 01:30 ./usr/include/gerris/river.h -rw-r--r-- root/root 5708 2016-10-22 01:30 ./usr/include/gerris/simulation.h -rw-r--r-- root/root 3148 2016-10-22 01:30 ./usr/include/gerris/solid.h -rw-r--r-- root/root 10086 2016-10-22 01:30 ./usr/include/gerris/source.h -rw-r--r-- root/root 1870 2016-10-22 01:30 ./usr/include/gerris/spatial.h -rw-r--r-- root/root 4599 2016-10-22 01:30 ./usr/include/gerris/surface.h -rw-r--r-- root/root 4072 2016-10-22 01:30 ./usr/include/gerris/tension.h -rw-r--r-- root/root 5180 2016-10-22 01:30 ./usr/include/gerris/timestep.h -rw-r--r-- root/root 1589 2016-10-22 01:30 ./usr/include/gerris/unstructured.h -rw-r--r-- root/root 10845 2016-10-22 01:30 ./usr/include/gerris/utils.h -rw-r--r-- root/root 9866 2016-10-22 01:30 ./usr/include/gerris/variable.h -rw-r--r-- root/root 195 2016-10-22 01:30 ./usr/include/gerris/version.h -rw-r--r-- root/root 6340 2016-10-22 01:30 ./usr/include/gerris/vof.h -rw-r--r-- root/root 2073 2016-10-22 01:30 ./usr/include/gerris/wave.h -rw-r--r-- root/root 1525 2016-10-22 01:30 ./usr/include/gfs.h drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/libgfs2D.so -> libgfs2D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/libgfs3D.so -> libgfs3D-1.3.so.2.0.0 drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 272 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/pkgconfig/gerris2D.pc -rw-r--r-- root/root 261 2016-10-22 01:30 ./usr/lib/aarch64-linux-gnu/pkgconfig/gerris3D.pc drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/x86_64-linux-gnu/libgfs2D-1.3.so -> libgfs2D-1.3.so.2.0.0 lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/lib/x86_64-linux-gnu/libgfs3D-1.3.so -> libgfs3D-1.3.so.2.0.0 drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-10-22 01:30 ./usr/share/doc/libgfs-dev/ lrwxrwxrwx root/root 0 2016-10-22 01:30 ./usr/share/doc/libgfs-dev/changelog.Debian.gz -> ../libgfs-1.3-2/changelog.Debian.gz -rw-r--r-- root/root 1937 2014-07-31 21:09 ./usr/share/doc/libgfs-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 124028 Build-Time: 552 Distribution: zesty-proposed Host Architecture: arm64 Install-Time: 40 Job: gerris_20131206+dfsg-9build1.dsc Machine Architecture: arm64 Package: gerris Package-Time: 594 Source-Version: 20131206+dfsg-9build1 Space: 124028 Status: successful Version: 20131206+dfsg-9build1 -------------------------------------------------------------------------------- Finished at 20161022-0141 Build needed 00:09:54, 124028k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11057202'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11057202/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11057202'] Unmounting chroot for build PACKAGEBUILD-11057202... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11057202'] Removing build PACKAGEBUILD-11057202