RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '487a3ec5adb75715edc80887df656ea48f02bf4e', '/home/buildd/filecache-default/d25cfce2b3fece95dbe9195395127ff90e07576e'] Synching the system clock with the buildd NTP service... 11 May 16:31:28 ntpdate[17315]: adjust time server 10.211.37.1 offset 0.000075 sec Unpacking chroot for build 487a3ec5adb75715edc80887df656ea48f02bf4e RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '487a3ec5adb75715edc80887df656ea48f02bf4e'] Mounting chroot for build 487a3ec5adb75715edc80887df656ea48f02bf4e RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '487a3ec5adb75715edc80887df656ea48f02bf4e', 'deb http://ftpmaster.internal/ubuntu oneiric main universe'] Overriding sources.list in build-487a3ec5adb75715edc80887df656ea48f02bf4e RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '487a3ec5adb75715edc80887df656ea48f02bf4e', 'armel'] Updating debian chroot for build 487a3ec5adb75715edc80887df656ea48f02bf4e Ign http://ftpmaster.internal oneiric InRelease Get:1 http://ftpmaster.internal oneiric Release.gpg [198 B] Get:2 http://ftpmaster.internal oneiric Release [39.8 kB] Get:3 http://ftpmaster.internal oneiric/main armel Packages [1546 kB] Get:4 http://ftpmaster.internal oneiric/universe armel Packages [5927 kB] Ign http://ftpmaster.internal oneiric/main TranslationIndex Ign http://ftpmaster.internal oneiric/universe TranslationIndex Ign http://ftpmaster.internal oneiric/main Translation-en Ign http://ftpmaster.internal oneiric/universe Translation-en Fetched 7513 kB in 21s (353 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 dpkg g++-4.6 gcc-4.5-base gcc-4.6 gcc-4.6-base insserv libc-bin libc-dev-bin libc6 libc6-dev libdb5.1 libgcc1 libgomp1 libidn11 libmpfr4 libncurses5 libncursesw5 libreadline6 libsepol1 libstdc++6 libstdc++6-4.6-dev linux-libc-dev multiarch-support ncurses-bin patch sed 28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After this operation, 69.6 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! dpkg ncurses-bin sed libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev libgomp1 gcc-4.6-base libstdc++6 cpp-4.6 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libgcc1 libmpfr4 binutils libncurses5 libreadline6 libdb5.1 libsepol1 multiarch-support insserv libncursesw5 libidn11 gcc-4.5-base patch Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main dpkg armel 1.16.0~ubuntu8 [1828 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main ncurses-bin armel 5.9-1 [147 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main sed armel 4.2.1-9 [134 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main libc-dev-bin armel 2.13-2ubuntu1 [75.2 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main libc6-dev armel 2.13-2ubuntu1 [2331 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libc-bin armel 2.13-2ubuntu1 [847 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libc6 armel 2.13-2ubuntu1 [3846 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main linux-libc-dev armel 2.6.39-1.6 [778 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main libgomp1 armel 4.6.0-6ubuntu3 [23.6 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6-base armel 4.6.0-6ubuntu3 [15.1 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6 armel 4.6.0-6ubuntu3 [275 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main cpp-4.6 armel 4.6.0-6ubuntu3 [4021 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6-4.6-dev armel 4.6.0-6ubuntu3 [1642 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main g++-4.6 armel 4.6.0-6ubuntu3 [4351 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6 armel 4.6.0-6ubuntu3 [4475 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main libgcc1 armel 1:4.6.0-6ubuntu3 [22.2 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libmpfr4 armel 3.0.1-3 [169 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main binutils armel 2.21.51.20110421-0ubuntu6 [2218 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main libncurses5 armel 5.9-1 [162 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main libreadline6 armel 6.2-1 [112 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main libdb5.1 armel 5.1.25-10 [597 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main libsepol1 armel 2.0.42-1 [103 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main multiarch-support armel 2.13-2ubuntu1 [6724 B] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main insserv armel 1.14.0-2.1 [47.3 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main libncursesw5 armel 5.9-1 [183 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main libidn11 armel 1.20-1 [107 kB] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.5-base armel 4.5.3-1ubuntu1 [12.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main patch armel 2.6.1-1 [78.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.6 MB in 3s (8804 kB/s) (Reading database ... 14084 files and directories currently installed.) Preparing to replace dpkg 1.16.0~ubuntu7 (using .../dpkg_1.16.0~ubuntu8_armel.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.0~ubuntu8) ... (Reading database ... 14084 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20101128-1 (using .../ncurses-bin_5.9-1_armel.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.9-1) ... (Reading database ... 14084 files and directories currently installed.) Preparing to replace sed 4.2.1-8 (using .../archives/sed_4.2.1-9_armel.deb) ... Unpacking replacement sed ... Setting up sed (4.2.1-9) ... (Reading database ... 14084 files and directories currently installed.) Preparing to replace libc-dev-bin 2.13-0ubuntu15 (using .../libc-dev-bin_2.13-2ubuntu1_armel.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.13-0ubuntu15 (using .../libc6-dev_2.13-2ubuntu1_armel.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.13-0ubuntu15 (using .../libc-bin_2.13-2ubuntu1_armel.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-2ubuntu1) ... (Reading database ... 14084 files and directories currently installed.) Preparing to replace libc6 2.13-0ubuntu15 (using .../libc6_2.13-2ubuntu1_armel.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-2ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14084 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.38-8.42 (using .../linux-libc-dev_2.6.39-1.6_armel.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.6.0-6ubuntu2 (using .../libgomp1_4.6.0-6ubuntu3_armel.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.0-6ubuntu2 (using .../gcc-4.6-base_4.6.0-6ubuntu3_armel.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.0-6ubuntu3) ... (Reading database ... 14098 files and directories currently installed.) Preparing to replace libstdc++6 4.6.0-6ubuntu2 (using .../libstdc++6_4.6.0-6ubuntu3_armel.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.0-6ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14098 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.0-6ubuntu2 (using .../cpp-4.6_4.6.0-6ubuntu3_armel.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libstdc++6-4.6-dev 4.6.0-6ubuntu2 (using .../libstdc++6-4.6-dev_4.6.0-6ubuntu3_armel.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.0-6ubuntu2 (using .../g++-4.6_4.6.0-6ubuntu3_armel.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.0-6ubuntu2 (using .../gcc-4.6_4.6.0-6ubuntu3_armel.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libgcc1 1:4.6.0-6ubuntu2 (using .../libgcc1_1%3a4.6.0-6ubuntu3_armel.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.0-6ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14098 files and directories currently installed.) Preparing to replace libmpfr4 3.0.1-2 (using .../libmpfr4_3.0.1-3_armel.deb) ... Unpacking replacement libmpfr4 ... Preparing to replace binutils 2.21.51.20110421-0ubuntu5 (using .../binutils_2.21.51.20110421-0ubuntu6_armel.deb) ... Unpacking replacement binutils ... Preparing to replace libncurses5 5.7+20101128-1 (using .../libncurses5_5.9-1_armel.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.9-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14098 files and directories currently installed.) Preparing to replace libreadline6 6.2-0ubuntu1 (using .../libreadline6_6.2-1_armel.deb) ... Unpacking replacement libreadline6 ... Setting up libreadline6 (6.2-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14098 files and directories currently installed.) Preparing to replace libdb5.1 5.1.19-2ubuntu1 (using .../libdb5.1_5.1.25-10_armel.deb) ... Unpacking replacement libdb5.1 ... Setting up libdb5.1 (5.1.25-10) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14099 files and directories currently installed.) Preparing to replace libsepol1 2.0.41-1 (using .../libsepol1_2.0.42-1_armel.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.0.42-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14098 files and directories currently installed.) Preparing to replace multiarch-support 2.13-0ubuntu15 (using .../multiarch-support_2.13-2ubuntu1_armel.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-2ubuntu1) ... (Reading database ... 14098 files and directories currently installed.) Preparing to replace insserv 1.14.0-2 (using .../insserv_1.14.0-2.1_armel.deb) ... Unpacking replacement insserv ... Preparing to replace libncursesw5 5.7+20101128-1 (using .../libncursesw5_5.9-1_armel.deb) ... Unpacking replacement libncursesw5 ... Preparing to replace libidn11 1.18-1build1 (using .../libidn11_1.20-1_armel.deb) ... Unpacking replacement libidn11 ... Preparing to replace gcc-4.5-base 4.5.2-11ubuntu2 (using .../gcc-4.5-base_4.5.3-1ubuntu1_armel.deb) ... Unpacking replacement gcc-4.5-base ... Preparing to replace patch 2.6-3 (using .../patch_2.6.1-1_armel.deb) ... Unpacking replacement patch ... Setting up libc-dev-bin (2.13-2ubuntu1) ... Setting up linux-libc-dev (2.6.39-1.6) ... Setting up libc6-dev (2.13-2ubuntu1) ... Setting up libgomp1 (4.6.0-6ubuntu3) ... Setting up libmpfr4 (3.0.1-3) ... Setting up cpp-4.6 (4.6.0-6ubuntu3) ... Setting up binutils (2.21.51.20110421-0ubuntu6) ... Setting up gcc-4.6 (4.6.0-6ubuntu3) ... Setting up insserv (1.14.0-2.1) ... Installing new version of config file /etc/insserv.conf ... Setting up libncursesw5 (5.9-1) ... Setting up libidn11 (1.20-1) ... Setting up gcc-4.5-base (4.5.3-1ubuntu1) ... Setting up patch (2.6.1-1) ... Setting up g++-4.6 (4.6.0-6ubuntu3) ... Setting up libstdc++6-4.6-dev (4.6.0-6ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '487a3ec5adb75715edc80887df656ea48f02bf4e', 'armel', 'oneiric', '--nolog', '--batch', '--archive=ubuntu', '--dist=oneiric', '--purpose=PRIMARY', '--architecture=armel', '--comp=universe', 'gff2aplot_2.0-6.dsc'] Initiating build 487a3ec5adb75715edc80887df656ea48f02bf4e with 0 processor cores. Automatic build of gff2aplot_2.0-6 on acorn by sbuild/armel 1.170.5 Build started at 20110511-1634 ****************************************************************************** gff2aplot_2.0-6.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 7.1), quilt (>= 0.47) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... cdbs: missing debhelper: missing quilt: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper quilt Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils dh-translations diffstat fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libpipeline1 libsqlite3-0 libunistring0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db mime-support po-debconf python python-scour python2.7 Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl python-doc python-tk python-profiler python-rsvg python-cairo python2.7-doc python2.7-profiler procmail graphviz Recommended packages: curl wget lynx-cur libmailtools-perl libhtml-format-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-translations diffstat fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libpipeline1 libsqlite3-0 libunistring0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db mime-support po-debconf python python-scour python2.7 quilt 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After this operation, 38.0 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libsqlite3-0 libmagic1 file mime-support python2.7 python bsdmainutils gettext-base groff-base liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libpipeline1 libwww-perl libxml-parser-perl libxml2 man-db m4 autoconf autotools-dev automake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper fdupes intltool dh-translations python-scour cdbs diffstat quilt Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main libexpat1 armel 2.0.1-7ubuntu3 [103 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libsqlite3-0 armel 3.7.4-2ubuntu5 [270 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main libmagic1 armel 5.04-5ubuntu2 [201 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main file armel 5.04-5ubuntu2 [22.2 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main python2.7 armel 2.7.1-5ubuntu2 [2512 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main python all 2.7.1-0ubuntu5 [163 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main bsdmainutils armel 8.2.2 [193 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main gettext-base armel 0.18.1.1-3ubuntu1 [56.1 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main groff-base armel 1.21-5 [929 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main liburi-perl all 1.58-1 [89.8 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libhtml-parser-perl armel 3.68-1build1 [95.5 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main libhtml-tree-perl all 4.2-1 [205 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libpipeline1 armel 1.2.0-1 [20.3 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main libwww-perl all 5.837-1 [363 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libxml-parser-perl armel 2.36-1.1build4 [281 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2 armel 2.7.8.dfsg-2 [561 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main man-db armel 2.6.0.2-1 [677 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main m4 armel 1.4.16-1 [182 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main autoconf all 2.68-1ubuntu1 [560 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main autotools-dev all 20110508.1 [45.1 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main automake all 1:1.11.1-1ubuntu1 [544 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main html2text armel 1.3.2a-15 [94.3 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main libcroco3 armel 0.6.2-1 [89.5 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main libunistring0 armel 0.9.3-4 [394 kB] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main gettext armel 0.18.1.1-3ubuntu1 [1156 kB] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ oneiric/main po-debconf all 1.0.16+nmu1 [212 kB] Get:30 http://ftpmaster.internal/ubuntu/ oneiric/main debhelper all 8.1.6ubuntu1 [484 kB] Get:31 http://ftpmaster.internal/ubuntu/ oneiric/main fdupes armel 1.50-PR2-3 [20.9 kB] Get:32 http://ftpmaster.internal/ubuntu/ oneiric/main intltool all 0.41.1-1 [103 kB] Get:33 http://ftpmaster.internal/ubuntu/ oneiric/main dh-translations all 97 [18.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ oneiric/main python-scour all 0.25+bzr207-2.1 [45.7 kB] Get:35 http://ftpmaster.internal/ubuntu/ oneiric/main cdbs all 0.4.93ubuntu2 [48.2 kB] Get:36 http://ftpmaster.internal/ubuntu/ oneiric/main diffstat armel 1.54-1 [20.5 kB] Get:37 http://ftpmaster.internal/ubuntu/ oneiric/main quilt all 0.48-7 [319 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.2 MB in 2s (5169 kB/s) Selecting previously deselected package libexpat1. (Reading database ... 14096 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_armel.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.4-2ubuntu5_armel.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.04-5ubuntu2_armel.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.04-5ubuntu2_armel.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.51-1ubuntu1_all.deb) ... Selecting previously deselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.1-5ubuntu2_armel.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.7.1-0ubuntu5_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_armel.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-3ubuntu1_armel.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-5_armel.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.58-1_all.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.68-1build1_armel.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_4.2-1_all.deb) ... Selecting previously deselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_armel.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.837-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build4_armel.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2_armel.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-1_armel.deb) ... Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.16-1_armel.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.68-1ubuntu1_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20110508.1_all.deb) ... Selecting previously deselected package automake. Unpacking automake (from .../automake_1%3a1.11.1-1ubuntu1_all.deb) ... Selecting previously deselected package html2text. 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Toolchain package versions: libc6-dev_2.13-2ubuntu1 make_3.81-8ubuntu1 dpkg-dev_1.16.0~ubuntu8 gcc-4.6_4.6.0-6ubuntu3 g++-4.6_4.6.0-6ubuntu3 binutils_2.21.51.20110421-0ubuntu6 libstdc++6_4.6.0-6ubuntu3 libstdc++6-4.6-dev_4.6.0-6ubuntu3 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Jan 25 13:10:56 2011 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gff2aplot_2.0-6.dsc dpkg-source: info: extracting gff2aplot in gff2aplot-2.0 dpkg-source: info: unpacking gff2aplot_2.0.orig.tar.gz dpkg-source: info: unpacking gff2aplot_2.0-6.debian.tar.gz dpkg-source: info: applying 02-blat2gff.diff dpkg-source: info: applying 03-parseblast.diff dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package gff2aplot dpkg-buildpackage: source version 2.0-6 dpkg-source --before-build gff2aplot-2.0 dpkg-buildpackage: host architecture armel /usr/bin/fakeroot debian/rules clean dh clean --with quilt dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/gff2aplot-2.0' rm -f src/ali2gff/ali2gff bin/ali2gff make[1]: Leaving directory `/build/buildd/gff2aplot-2.0' dh_quilt_unpatch Removing patch 03-parseblast.diff Restoring src/parseblast.pl Removing patch 02-blat2gff.diff Restoring src/blat2gff.pl No patches applied dh_clean debian/rules build dh build --with quilt dh_testdir dh_quilt_patch Applying patch 02-blat2gff.diff patching file src/blat2gff.pl Applying patch 03-parseblast.diff patching file src/parseblast.pl Now at patch 03-parseblast.diff dh_auto_configure dh_auto_build make[1]: Entering directory `/build/buildd/gff2aplot-2.0' ### ### RUNNING MAKEFILE ### ### Wed May 11 16:37:55 UTC 2011 -- buildd ### ### Finishing PERL script from "src/gff2aplot.pl" -> "bin/gff2aplot.pl" ### Finishing PERL script from "src/parseblast.pl" -> "bin/parseblast.pl" ### Finishing PERL script from "src/blat2gff.pl" -> "bin/blat2gff.pl" ### Finishing PERL script from "src/sim2gff.pl" -> "bin/sim2gff.pl" ### Making ALI2GFF... make[2]: Entering directory `/build/buildd/gff2aplot-2.0/src/ali2gff' ali2gff.c: In function 'main': ali2gff.c:88:8: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] make[2]: Leaving directory `/build/buildd/gff2aplot-2.0/src/ali2gff' `./src/ali2gff/ali2gff' -> `./bin/ali2gff' mode of `bin/gff2aplot.pl' changed to 0755 (rwxr-xr-x) mode of `bin/parseblast.pl' changed to 0755 (rwxr-xr-x) mode of `bin/blat2gff.pl' changed to 0755 (rwxr-xr-x) mode of `bin/sim2gff.pl' changed to 0755 (rwxr-xr-x) ### ### MAKEFILE DONE... ### make[1]: Leaving directory `/build/buildd/gff2aplot-2.0' dh_auto_test make[1]: Entering directory `/build/buildd/gff2aplot-2.0' ### SORRY !!! Tests were not implemented yet... make[1]: Leaving directory `/build/buildd/gff2aplot-2.0' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with quilt dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/gff2aplot-2.0' for script in `find bin -name "*.pl"` ; do mv $script bin/`basename $script .pl` ; done make[1]: Leaving directory `/build/buildd/gff2aplot-2.0' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a Duplicate specification "O=s" for option "O" dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: gff2aplot dh_strip debug symbol extraction: packages to act on: gff2aplot dh_strip debug symbol extraction: ignored packages: gff2aplot is already stripped, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 97 pkgstriptranslations: processing control file: ./debian/gff2aplot/DEBIAN/control, package gff2aplot, directory ./debian/gff2aplot pkgstriptranslations: gff2aplot does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gff2aplot/DEBIAN/control, package gff2aplot, directory debian/gff2aplot dpkg-deb: warning: 'debian/gff2aplot/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gff2aplot' in `../gff2aplot_2.0-6_armel.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../gff2aplot_2.0-6_armel.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gff2aplot-2.0 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20110511-1638 chroot-autobuild/build/buildd/gff2aplot_2.0-6_armel.deb: new debian package, version 2.0. size 327326 bytes: control archive= 3327 bytes. 2853 bytes, 48 lines control 5009 bytes, 58 lines md5sums Package: gff2aplot Version: 2.0-6 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 784 Depends: libc6 (>= 2.7), perl Suggests: postscript-viewer, gff2ps Section: science Priority: optional Homepage: http://genome.imim.es/software/gfftools/GFF2APLOT.html Description: pair-wise alignment-plots for genomic sequences in PostScript A program to visualize the alignment of two genomic sequences together with their annotations. From GFF-format input files it produces PostScript figures for that alignment. The following menu lists many features of gff2aplot: * Comprehensive alignment plots for any GFF-feature. Attributes are defined separately so you can modify only whatsoever attributes for a given file or share same customization across different data-sets. * All parameters are set by default within the program, but it can be also fully configured via gff2ps-like flexible customization files. Program can handle several of such files, summarizing all the settings before producing the corresponding figure. Moreover, all customization parameters can be set via command-line switches, which allows users to play with those parameters before adding any to a customization file. * Source order is taken from input files, if you swap file order you can visualize alignment and its annotation with the new input arrangement. * All alignment scores can be visualized in a PiP box below gff2aplot area, using grey-color scale, user-defined color scale or score-dependent gradients. * Scalable fonts, which can also be chosen among the basic PostScript default fonts. Feature and group labels can be rotated to improve readability in both annotation axes. * The program is still defined as a Unix filter so it can handle data from files, redirections and pipes, writing output to standard-output and warnings to standard error. * gff2aplot is able to manage many physical page formats (from A0 to A10, and more -see available page sizes in its manual-), including user-defined ones. This allows, for instance, the generation of poster size genomic maps, or the use of a continuous-paper supporting plotting device, either in portrait or landscape. * You can draw different alignments on same alignment plot and distinguish them by using different colors for each. * Shape dictionary has been expanded, so that further feature shapes are now available (see manual). * Annotation projections through alignment plots (so called ribbons) emulate transparencies via complementary color fill patterns. This feature allows to show color pseudo-blending when horizontal and vertical ribbons overlap. chroot-autobuild/build/buildd/gff2aplot_2.0-6_armel.deb: drwxr-xr-x root/root 0 2011-05-11 16:38 ./ drwxr-xr-x root/root 0 2011-05-11 16:38 ./usr/ drwxr-xr-x root/root 0 2011-05-11 16:38 ./usr/share/ drwxr-xr-x root/root 0 2011-05-11 16:38 ./usr/share/man/ drwxr-xr-x root/root 0 2011-05-11 16:38 ./usr/share/man/man1/ -rw-r--r-- root/root 559 2011-05-11 16:38 ./usr/share/man/man1/ali2gff.1.gz -rw-r--r-- root/root 344 2011-05-11 16:38 ./usr/share/man/man1/blat2gff.1.gz -rw-r--r-- root/root 674 2011-05-11 16:38 ./usr/share/man/man1/sim2gff.1.gz -rw-r--r-- root/root 3013 2011-05-11 16:38 ./usr/share/man/man1/gff2aplot.1.gz -rw-r--r-- root/root 2586 2011-05-11 16:38 ./usr/share/man/man1/parseblast.1.gz drwxr-xr-x root/root 0 2011-05-11 16:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-11 16:38 ./usr/share/doc/gff2aplot/ -rw-r--r-- root/root 1260 2008-11-17 06:38 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for genomic sequences in PostScript Changes: gff2aplot (2.0-6) unstable; urgency=low . * debian/control - Added myself as Uploader - Standards-Version: 3.9.1 (no changes needed) - debhelper 7 (actually >= 7.1) - Fixed Spelling of Debian Med team - Build-Depends: removed cdbs, added quilt * debian/source/format: 3.0 (quilt) * debian/rules: rewritten to use dh * debian/patches: use quilt * debian/patches/01-makefile.diff: Removed because unneeded with current packaging * debian/{examples,install,manpages}: added Checksums-Sha1: fa83819551f54a7ae0671c9a20298eb2aa977855 327326 gff2aplot_2.0-6_armel.deb Checksums-Sha256: 4640d29184ea15b259c73c80b3d761c1d69c6157308f6892f76090fb2c8e5643 327326 gff2aplot_2.0-6_armel.deb Files: e947c7ec3d72f322a38b34ce2372d724 327326 science optional gff2aplot_2.0-6_armel.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gff2aplot-2.0 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base mime-support m4 gettext file libhtml-parser-perl intltool libwww-perl liburi-perl libhtml-tree-perl autotools-dev po-debconf quilt dh-translations libxml-parser-perl libcroco3 libhtml-tagset-perl libxml2 automake python-scour man-db intltool-debian python2.7 cdbs diffstat html2text gettext-base debhelper libunistring0 python libmagic1 libpipeline1 libexpat1 libsqlite3-0 bsdmainutils fdupes autoconf (Reading database ... 16663 files and directories currently installed.) Removing quilt ... Purging configuration files for quilt ... Removing cdbs ... Removing diffstat ... Removing fdupes ... Removing dh-translations ... Removing python-scour ... Removing debhelper ... Removing python ... Purging configuration files for python ... Removing intltool ... Removing po-debconf ... Removing libxml-parser-perl ... Removing automake ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing python2.7 ... Purging configuration files for python2.7 ... Removing html2text ... Purging configuration files for html2text ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing autoconf ... Purging configuration files for autoconf ... Removing groff-base ... Purging configuration files for groff-base ... Removing mime-support ... Purging configuration files for mime-support ... Removing m4 ... Removing gettext ... Removing file ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing autotools-dev ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libhtml-tagset-perl ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20110511-1638 Build needed 00:01:07, 3276k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '487a3ec5adb75715edc80887df656ea48f02bf4e'] Scanning for processes to kill in build /home/buildd/build-487a3ec5adb75715edc80887df656ea48f02bf4e/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '487a3ec5adb75715edc80887df656ea48f02bf4e'] Unmounting chroot for build 487a3ec5adb75715edc80887df656ea48f02bf4e... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '487a3ec5adb75715edc80887df656ea48f02bf4e'] Removing build 487a3ec5adb75715edc80887df656ea48f02bf4e