RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '76d9d2248b46d11a089c85e673263527c518b275', '/home/buildd/filecache-default/2af6ad3f555bc94a51b874225678a8670faeb5a0'] Synching the system clock with the buildd NTP service... 9 Dec 04:59:10 ntpdate[17457]: adjust time server 10.211.37.1 offset 0.000090 sec Unpacking chroot for build 76d9d2248b46d11a089c85e673263527c518b275 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '76d9d2248b46d11a089c85e673263527c518b275'] Mounting chroot for build 76d9d2248b46d11a089c85e673263527c518b275 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '76d9d2248b46d11a089c85e673263527c518b275', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-76d9d2248b46d11a089c85e673263527c518b275 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '76d9d2248b46d11a089c85e673263527c518b275', 'armhf'] Updating debian chroot for build 76d9d2248b46d11a089c85e673263527c518b275 Ign http://archive-team.internal precise InRelease Ign http://archive-team.internal precise Release.gpg Get:1 http://archive-team.internal precise Release [752 B] Ign http://ftpmaster.internal precise InRelease Ign http://archive-team.internal precise/main TranslationIndex Get:2 http://ftpmaster.internal precise Release.gpg [198 B] Get:3 http://ftpmaster.internal precise Release [49.6 kB] Get:4 http://archive-team.internal precise/main armhf Packages [1696 kB] Get:5 http://ftpmaster.internal precise/main armhf Packages [1240 kB] Get:6 http://ftpmaster.internal precise/universe armhf Packages [3510 kB] Ign http://archive-team.internal precise/main Translation-en Get:7 http://ftpmaster.internal precise/main TranslationIndex [3502 B] Get:8 http://ftpmaster.internal precise/universe TranslationIndex [2712 B] Get:9 http://ftpmaster.internal precise/main Translation-en [711 kB] Get:10 http://ftpmaster.internal precise/universe Translation-en [3291 kB] Fetched 10.5 MB in 22s (461 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: libglib2.0-0 linux-libc-dev 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1797 kB of archives. After this operation, 76.8 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libglib2.0-0 linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-0 armhf 2.31.2-0ubuntu2 [982 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev armhf 3.2.0-3.9 [814 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1797 kB in 0s (3808 kB/s) (Reading database ... 11535 files and directories currently installed.) Preparing to replace libglib2.0-0 2.30.1-2ubuntu1 (using .../libglib2.0-0_2.31.2-0ubuntu2_armhf.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace linux-libc-dev 3.2.0-3.8 (using .../linux-libc-dev_3.2.0-3.9_armhf.deb) ... Unpacking replacement linux-libc-dev ... Setting up libglib2.0-0 (2.31.2-0ubuntu2) ... Setting up linux-libc-dev (3.2.0-3.9) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '76d9d2248b46d11a089c85e673263527c518b275', 'armhf', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=armhf', '--comp=universe', 'gff2aplot_2.0-6.dsc'] Initiating build 76d9d2248b46d11a089c85e673263527c518b275 with 2 processor cores. Automatic build of gff2aplot_2.0-6 on chort by sbuild/armhf 1.170.5 Build started at 20111209-0500 ****************************************************************************** gff2aplot_2.0-6.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 7.1), quilt (>= 0.47) Checking for already installed source dependencies... cdbs: missing debhelper: missing quilt: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper quilt Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates dh-translations diffstat file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libdb4.8 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libsqlite3-0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase openssl po-debconf python python-scour python2.7 Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc procmail graphviz Recommended packages: curl wget lynx-cur libio-socket-inet6-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates cdbs debhelper dh-translations diffstat file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libdb4.8 libencode-locale-perl libexpat1 libfile-listing-perl libgettextpo0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libsqlite3-0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase openssl po-debconf python python-scour python2.7 quilt 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 12.6 MB of archives. After this operation, 37.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libdb4.8 libexpat1 libsqlite3-0 libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libmagic1 file mime-support netbase python2.7 python bsdmainutils openssl ca-certificates gettext-base groff-base man-db m4 autoconf autotools-dev automake html2text gettext intltool-debian po-debconf debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-http-perl libnet-ssleay-perl libio-socket-ssl-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations python-scour cdbs diffstat quilt Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libdb4.8 armhf 4.8.30-10 [576 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 armhf 2.0.1-7.2 [102 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libsqlite3-0 armhf 3.7.9-2ubuntu1 [282 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 armhf 1.2.0-5 [20.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libxml2 armhf 2.7.8.dfsg-5ubuntu1 [550 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 armhf 0.6.2-2 [80.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 armhf 0.9.3-5 [393 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 armhf 0.18.1.1-5ubuntu3 [99.4 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 armhf 5.09-2 [213 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main file armhf 5.09-2 [19.0 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main netbase all 4.46ubuntu1 [14.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main python2.7 armhf 2.7.2-8build1 [2516 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main python all 2.7.2-9ubuntu1 [168 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils armhf 8.2.3 [193 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main openssl armhf 1.0.0e-2ubuntu4 [506 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main ca-certificates armhf 20110502+nmu1ubuntu5 [164 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main gettext-base armhf 0.18.1.1-5ubuntu3 [54.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main groff-base armhf 1.21-6 [926 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main man-db armhf 2.6.0.2-3 [673 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main m4 armhf 1.4.16-2ubuntu1 [182 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main autoconf armhf 2.68-1ubuntu2 [560 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20110511.1 [44.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main automake armhf 1:1.11.1-1ubuntu2 [544 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main html2text armhf 1.3.2a-15 [85.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main gettext armhf 0.18.1.1-5ubuntu3 [1050 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main po-debconf armhf 1.0.16+nmu1ubuntu1 [211 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main debhelper armhf 8.9.9ubuntu1 [477 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main liburi-perl all 1.59-1 [90.3 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libencode-locale-perl all 1.02-2 [12.0 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libhttp-date-perl all 6.00-1 [10.1 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libfile-listing-perl all 6.03-1 [9690 B] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libhtml-parser-perl armhf 3.69-1build1 [95.8 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libhtml-tree-perl all 4.2-1 [205 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main liblwp-mediatypes-perl all 6.01-1 [17.5 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libhttp-message-perl all 6.01-1 [77.6 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libnet-http-perl all 6.01-1 [20.5 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libnet-ssleay-perl armhf 1.42-1build1 [174 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main libio-socket-ssl-perl all 1.49-1 [47.5 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main liblwp-protocol-https-perl all 6.02-1 [6746 B] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libwww-perl all 6.03-1 [156 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libxml-parser-perl armhf 2.41-1build1 [302 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main intltool all 0.50.0-0ubuntu2 [101 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main dh-translations all 109 [20.9 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main python-scour all 0.26-2 [46.3 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main cdbs all 0.4.99ubuntu1 [48.9 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main diffstat armhf 1.54-1 [20.2 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main quilt armhf 0.48-8 [279 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.6 MB in 3s (3945 kB/s) Selecting previously unselected package libdb4.8. (Reading database ... 11535 files and directories currently installed.) Unpacking libdb4.8 (from .../libdb4.8_4.8.30-10_armhf.deb) ... Selecting previously unselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_armhf.deb) ... Selecting previously unselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.9-2ubuntu1_armhf.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_armhf.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5ubuntu1_armhf.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_armhf.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_armhf.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_armhf.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_armhf.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.09-2_armhf.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.51-1ubuntu1_all.deb) ... Selecting previously unselected package netbase. Unpacking netbase (from .../netbase_4.46ubuntu1_all.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.2-8build1_armhf.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.2-9ubuntu1_all.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armhf.deb) ... Selecting previously unselected package openssl. Unpacking openssl (from .../openssl_1.0.0e-2ubuntu4_armhf.deb) ... Selecting previously unselected package ca-certificates. Unpacking ca-certificates (from .../ca-certificates_20110502+nmu1ubuntu5_armhf.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_armhf.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../m4_1.4.16-2ubuntu1_armhf.deb) ... Selecting previously unselected package autoconf. Unpacking autoconf (from .../autoconf_2.68-1ubuntu2_armhf.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20110511.1_all.deb) ... Selecting previously unselected package automake. Unpacking automake (from .../automake_1%3a1.11.1-1ubuntu2_armhf.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armhf.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_armhf.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1ubuntu1_armhf.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.9ubuntu1_armhf.deb) ... Selecting previously unselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.59-1_all.deb) ... Selecting previously unselected package libencode-locale-perl. Unpacking libencode-locale-perl (from .../libencode-locale-perl_1.02-2_all.deb) ... Selecting previously unselected package libhttp-date-perl. Unpacking libhttp-date-perl (from .../libhttp-date-perl_6.00-1_all.deb) ... Selecting previously unselected package libfile-listing-perl. Unpacking libfile-listing-perl (from .../libfile-listing-perl_6.03-1_all.deb) ... Selecting previously unselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously unselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.69-1build1_armhf.deb) ... Selecting previously unselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_4.2-1_all.deb) ... Selecting previously unselected package liblwp-mediatypes-perl. Unpacking liblwp-mediatypes-perl (from .../liblwp-mediatypes-perl_6.01-1_all.deb) ... Selecting previously unselected package libhttp-message-perl. Unpacking libhttp-message-perl (from .../libhttp-message-perl_6.01-1_all.deb) ... Selecting previously unselected package libhttp-cookies-perl. Unpacking libhttp-cookies-perl (from .../libhttp-cookies-perl_6.00-2_all.deb) ... Selecting previously unselected package libhttp-negotiate-perl. Unpacking libhttp-negotiate-perl (from .../libhttp-negotiate-perl_6.00-2_all.deb) ... Selecting previously unselected package libnet-http-perl. Unpacking libnet-http-perl (from .../libnet-http-perl_6.01-1_all.deb) ... Selecting previously unselected package libnet-ssleay-perl. Unpacking libnet-ssleay-perl (from .../libnet-ssleay-perl_1.42-1build1_armhf.deb) ... Selecting previously unselected package libio-socket-ssl-perl. Unpacking libio-socket-ssl-perl (from .../libio-socket-ssl-perl_1.49-1_all.deb) ... Selecting previously unselected package liblwp-protocol-https-perl. Unpacking liblwp-protocol-https-perl (from .../liblwp-protocol-https-perl_6.02-1_all.deb) ... Selecting previously unselected package libwww-robotrules-perl. Unpacking libwww-robotrules-perl (from .../libwww-robotrules-perl_6.01-1_all.deb) ... Selecting previously unselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_6.03-1_all.deb) ... Selecting previously unselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.41-1build1_armhf.deb) ... Selecting previously unselected package intltool. Unpacking intltool (from .../intltool_0.50.0-0ubuntu2_all.deb) ... Selecting previously unselected package dh-translations. Unpacking dh-translations (from .../dh-translations_109_all.deb) ... Selecting previously unselected package python-scour. Unpacking python-scour (from .../python-scour_0.26-2_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.99ubuntu1_all.deb) ... Selecting previously unselected package diffstat. Unpacking diffstat (from .../diffstat_1.54-1_armhf.deb) ... Selecting previously unselected package quilt. Unpacking quilt (from .../quilt_0.48-8_armhf.deb) ... Setting up libdb4.8 (4.8.30-10) ... Setting up libexpat1 (2.0.1-7.2) ... Setting up libsqlite3-0 (3.7.9-2ubuntu1) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxml2 (2.7.8.dfsg-5ubuntu1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up netbase (4.46ubuntu1) ... Setting up python2.7 (2.7.2-8build1) ... Setting up python (2.7.2-9ubuntu1) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up openssl (1.0.0e-2ubuntu4) ... Setting up ca-certificates (20110502+nmu1ubuntu5) ... Updating certificates in /etc/ssl/certs... WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem 156 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up m4 (1.4.16-2ubuntu1) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20110511.1) ... Setting up automake (1:1.11.1-1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1ubuntu1) ... Setting up debhelper (8.9.9ubuntu1) ... Setting up liburi-perl (1.59-1) ... Setting up libencode-locale-perl (1.02-2) ... Setting up libhttp-date-perl (6.00-1) ... Setting up libfile-listing-perl (6.03-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.69-1build1) ... Setting up libhtml-tree-perl (4.2-1) ... Setting up liblwp-mediatypes-perl (6.01-1) ... Setting up libhttp-message-perl (6.01-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-http-perl (6.01-1) ... Setting up libnet-ssleay-perl (1.42-1build1) ... Setting up libio-socket-ssl-perl (1.49-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-2) ... Setting up diffstat (1.54-1) ... Setting up quilt (0.48-8) ... Setting up liblwp-protocol-https-perl (6.02-1) ... Setting up libwww-perl (6.03-1) ... Setting up libxml-parser-perl (2.41-1build1) ... Setting up intltool (0.50.0-0ubuntu2) ... Setting up dh-translations (109) ... Setting up cdbs (0.4.99ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu3 gcc-4.6_4.6.2-5ubuntu1 g++-4.6_4.6.2-5ubuntu1 binutils_2.22-1ubuntu1 libstdc++6-4.6-dev_4.6.2-5ubuntu1 libstdc++6_4.6.2-5ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue Jan 25 13:10:56 2011 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gff2aplot_2.0-6.dsc dpkg-source: info: extracting gff2aplot in gff2aplot-2.0 dpkg-source: info: unpacking gff2aplot_2.0.orig.tar.gz dpkg-source: info: unpacking gff2aplot_2.0-6.debian.tar.gz dpkg-source: info: applying 02-blat2gff.diff dpkg-source: info: applying 03-parseblast.diff dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package gff2aplot dpkg-buildpackage: source version 2.0-6 dpkg-source --before-build gff2aplot-2.0 dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean dh clean --with quilt dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/gff2aplot-2.0' rm -f src/ali2gff/ali2gff bin/ali2gff make[1]: Leaving directory `/build/buildd/gff2aplot-2.0' dh_quilt_unpatch Removing patch 03-parseblast.diff Restoring src/parseblast.pl Removing patch 02-blat2gff.diff Restoring src/blat2gff.pl No patches applied dh_clean debian/rules build dh build --with quilt dh_testdir dh_quilt_patch Applying patch 02-blat2gff.diff patching file src/blat2gff.pl Applying patch 03-parseblast.diff patching file src/parseblast.pl Now at patch 03-parseblast.diff dh_auto_configure dh_auto_build make[1]: Entering directory `/build/buildd/gff2aplot-2.0' ### ### RUNNING MAKEFILE ### ### Fri Dec 9 05:02:05 UTC 2011 -- buildd ### ### Finishing PERL script from "src/gff2aplot.pl" -> "bin/gff2aplot.pl" ### Finishing PERL script from "src/parseblast.pl" -> "bin/parseblast.pl" ### Finishing PERL script from "src/blat2gff.pl" -> "bin/blat2gff.pl" ### Finishing PERL script from "src/sim2gff.pl" -> "bin/sim2gff.pl" ### Making ALI2GFF... make[2]: Entering directory `/build/buildd/gff2aplot-2.0/src/ali2gff' ali2gff.c: In function 'main': ali2gff.c:88:8: warning: variable 'ptr' set but not used [-Wunused-but-set-variable] make[2]: Leaving directory `/build/buildd/gff2aplot-2.0/src/ali2gff' `./src/ali2gff/ali2gff' -> `./bin/ali2gff' mode of `bin/gff2aplot.pl' changed from 0664 (rw-rw-r--) to 0755 (rwxr-xr-x) mode of `bin/parseblast.pl' changed from 0664 (rw-rw-r--) to 0755 (rwxr-xr-x) mode of `bin/blat2gff.pl' changed from 0664 (rw-rw-r--) to 0755 (rwxr-xr-x) mode of `bin/sim2gff.pl' changed from 0664 (rw-rw-r--) to 0755 (rwxr-xr-x) ### ### MAKEFILE DONE... ### make[1]: Leaving directory `/build/buildd/gff2aplot-2.0' dh_auto_test make[1]: Entering directory `/build/buildd/gff2aplot-2.0' ### SORRY !!! Tests were not implemented yet... make[1]: Leaving directory `/build/buildd/gff2aplot-2.0' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with quilt dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/gff2aplot-2.0' for script in `find bin -name "*.pl"` ; do mv $script bin/`basename $script .pl` ; done make[1]: Leaving directory `/build/buildd/gff2aplot-2.0' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: gff2aplot dh_strip debug symbol extraction: packages to act on: gff2aplot dh_strip debug symbol extraction: ignored packages: gff2aplot is already stripped, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 109 pkgstriptranslations: processing gff2aplot (in debian/gff2aplot); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gff2aplot/DEBIAN/control, package gff2aplot, directory debian/gff2aplot dpkg-deb: warning: 'debian/gff2aplot/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gff2aplot' in `../gff2aplot_2.0-6_armhf.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../gff2aplot_2.0-6_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gff2aplot-2.0 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111209-0502 chroot-autobuild/build/buildd/gff2aplot_2.0-6_armhf.deb: new debian package, version 2.0. size 326732 bytes: control archive= 3328 bytes. 2853 bytes, 48 lines control 5009 bytes, 58 lines md5sums Package: gff2aplot Version: 2.0-6 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 636 Depends: libc6 (>= 2.7), perl Suggests: postscript-viewer, gff2ps Section: science Priority: optional Homepage: http://genome.imim.es/software/gfftools/GFF2APLOT.html Description: pair-wise alignment-plots for genomic sequences in PostScript A program to visualize the alignment of two genomic sequences together with their annotations. From GFF-format input files it produces PostScript figures for that alignment. The following menu lists many features of gff2aplot: * Comprehensive alignment plots for any GFF-feature. Attributes are defined separately so you can modify only whatsoever attributes for a given file or share same customization across different data-sets. * All parameters are set by default within the program, but it can be also fully configured via gff2ps-like flexible customization files. Program can handle several of such files, summarizing all the settings before producing the corresponding figure. Moreover, all customization parameters can be set via command-line switches, which allows users to play with those parameters before adding any to a customization file. * Source order is taken from input files, if you swap file order you can visualize alignment and its annotation with the new input arrangement. * All alignment scores can be visualized in a PiP box below gff2aplot area, using grey-color scale, user-defined color scale or score-dependent gradients. * Scalable fonts, which can also be chosen among the basic PostScript default fonts. Feature and group labels can be rotated to improve readability in both annotation axes. * The program is still defined as a Unix filter so it can handle data from files, redirections and pipes, writing output to standard-output and warnings to standard error. * gff2aplot is able to manage many physical page formats (from A0 to A10, and more -see available page sizes in its manual-), including user-defined ones. This allows, for instance, the generation of poster size genomic maps, or the use of a continuous-paper supporting plotting device, either in portrait or landscape. * You can draw different alignments on same alignment plot and distinguish them by using different colors for each. * Shape dictionary has been expanded, so that further feature shapes are now available (see manual). * Annotation projections through alignment plots (so called ribbons) emulate transparencies via complementary color fill patterns. This feature allows to show color pseudo-blending when horizontal and vertical ribbons overlap. chroot-autobuild/build/buildd/gff2aplot_2.0-6_armhf.deb: drwxr-xr-x root/root 0 2011-12-09 05:02 ./ drwxr-xr-x root/root 0 2011-12-09 05:02 ./usr/ drwxr-xr-x root/root 0 2011-12-09 05:02 ./usr/share/ drwxr-xr-x root/root 0 2011-12-09 05:02 ./usr/share/man/ drwxr-xr-x root/root 0 2011-12-09 05:02 ./usr/share/man/man1/ -rw-r--r-- root/root 3013 2011-12-09 05:02 ./usr/share/man/man1/gff2aplot.1.gz -rw-r--r-- root/root 344 2011-12-09 05:02 ./usr/share/man/man1/blat2gff.1.gz -rw-r--r-- root/root 2586 2011-12-09 05:02 ./usr/share/man/man1/parseblast.1.gz -rw-r--r-- root/root 674 2011-12-09 05:02 ./usr/share/man/man1/sim2gff.1.gz -rw-r--r-- root/root 559 2011-12-09 05:02 ./usr/share/man/man1/ali2gff.1.gz drwxr-xr-x root/root 0 2011-12-09 05:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-09 05:02 ./usr/share/doc/gff2aplot/ -rw-r--r-- root/root 2211 2003-06-05 15:45 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15:45 ./usr/share/doc/gff2aplot/examples/mhcregion/hs.fa.gz -rw-r--r-- root/root 12211 2003-06-05 15:45 ./usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sim.gff.gz -rw-r--r-- root/root 66844 2003-06-05 15:45 ./usr/share/doc/gff2aplot/GFF2APLOT_MANUAL.ps.gz drwxr-xr-x root/root 0 2011-12-09 05:02 ./usr/bin/ -rwxr-xr-x root/root 5381 2011-12-09 05:02 ./usr/bin/blat2gff -rwxr-xr-x root/root 36284 2011-12-09 05:02 ./usr/bin/ali2gff -rwxr-xr-x root/root 201809 2011-12-09 05:02 ./usr/bin/gff2aplot -rwxr-xr-x root/root 10232 2011-12-09 05:02 ./usr/bin/sim2gff -rwxr-xr-x root/root 36734 2011-12-09 05:02 ./usr/bin/parseblast gff2aplot_2.0-6_armhf.changes: Format: 1.8 Date: Tue, 25 Jan 2011 13:32:41 +0100 Source: gff2aplot Binary: gff2aplot Architecture: armhf Version: 2.0-6 Distribution: precise Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Andreas Tille Description: gff2aplot - pair-wise alignment-plots for genomic sequences in PostScript Changes: gff2aplot (2.0-6) unstable; urgency=low . * debian/control - Added myself as Uploader - Standards-Version: 3.9.1 (no changes needed) - debhelper 7 (actually >= 7.1) - Fixed Spelling of Debian Med team - Build-Depends: removed cdbs, added quilt * debian/source/format: 3.0 (quilt) * debian/rules: rewritten to use dh * debian/patches: use quilt * debian/patches/01-makefile.diff: Removed because unneeded with current packaging * debian/{examples,install,manpages}: added Checksums-Sha1: e0d72b1b80dbb3186e727577a58676d465247dae 326732 gff2aplot_2.0-6_armhf.deb Checksums-Sha256: 5d5d5f01c5ab852e4a2277736f098e5a69cb30bd51703fe99b4a15e987b69f65 326732 gff2aplot_2.0-6_armhf.deb Files: d47d668a8aa2ab58794fe8c944f318f8 326732 science optional gff2aplot_2.0-6_armhf.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gff2aplot-2.0 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libhttp-message-perl mime-support m4 gettext file libhtml-parser-perl intltool libhttp-cookies-perl openssl libwww-perl liburi-perl libhtml-tree-perl autotools-dev po-debconf libnet-http-perl libdb4.8 quilt dh-translations libxml-parser-perl libcroco3 libhtml-tagset-perl libxml2 netbase libgettextpo0 automake python-scour libhttp-date-perl man-db libnet-ssleay-perl libfile-listing-perl libencode-locale-perl intltool-debian libhttp-negotiate-perl python2.7 libio-socket-ssl-perl liblwp-protocol-https-perl cdbs ca-certificates diffstat html2text libwww-robotrules-perl gettext-base debhelper libunistring0 python libmagic1 libpipeline1 libexpat1 libsqlite3-0 bsdmainutils liblwp-mediatypes-perl autoconf (Reading database ... 14537 files and directories currently installed.) Removing quilt ... Purging configuration files for quilt ... Removing cdbs ... Removing diffstat ... Removing dh-translations ... Removing python-scour ... Removing debhelper ... Removing python ... Purging configuration files for python ... Removing intltool ... Removing po-debconf ... Removing libxml-parser-perl ... Removing automake ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing python2.7 ... Purging configuration files for python2.7 ... Removing html2text ... Purging configuration files for html2text ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing autoconf ... Purging configuration files for autoconf ... Removing groff-base ... Purging configuration files for groff-base ... Removing mime-support ... Purging configuration files for mime-support ... Removing m4 ... Removing gettext ... Removing file ... Removing autotools-dev ... Removing libdb4.8 ... Removing libgettextpo0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing libfile-listing-perl ... Removing libhttp-negotiate-perl ... Removing liblwp-protocol-https-perl ... Removing ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libwww-robotrules-perl ... Removing libhttp-cookies-perl ... Removing openssl ... Purging configuration files for openssl ... Removing libnet-http-perl ... Removing libio-socket-ssl-perl ... Removing libhttp-message-perl ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libhtml-tagset-perl ... Removing netbase ... Purging configuration files for netbase ... Removing libhttp-date-perl ... Removing libnet-ssleay-perl ... Removing libencode-locale-perl ... Removing liblwp-mediatypes-perl ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111209-0502 Build needed 00:00:34, 3276k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '76d9d2248b46d11a089c85e673263527c518b275'] Scanning for processes to kill in build /home/buildd/build-76d9d2248b46d11a089c85e673263527c518b275/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '76d9d2248b46d11a089c85e673263527c518b275'] Unmounting chroot for build 76d9d2248b46d11a089c85e673263527c518b275... none /home/buildd/build-76d9d2248b46d11a089c85e673263527c518b275/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-76d9d2248b46d11a089c85e673263527c518b275/chroot-autobuild/dev/pts devpts rw,relatime,mode=600,ptmxmode=000 0 0 none /home/buildd/build-76d9d2248b46d11a089c85e673263527c518b275/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-76d9d2248b46d11a089c85e673263527c518b275/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '76d9d2248b46d11a089c85e673263527c518b275'] Removing build 76d9d2248b46d11a089c85e673263527c518b275