https://launchpad.net/ubuntu/+source/gromacs/2018.2-1/+build/15023449 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-032 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:17:06 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 16 Jun 23:11:34 ntpdate[1870]: adjust time server 10.211.37.1 offset -0.015339 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15023449 /home/buildd/filecache-default/fc6c56f66744d62233b3c844f67cb7d83d839bbc Creating target for build PACKAGEBUILD-15023449 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15023449 Starting target for build PACKAGEBUILD-15023449 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15023449 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15023449 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15023449 Updating target for build PACKAGEBUILD-15023449 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf Packages [964 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe armhf Packages [8360 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5006 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf Packages [83.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [50.2 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf Packages [979 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [489 kB] Fetched 16.9 MB in 6s (2618 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libkmod2 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libprocps6 libreadline7 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv tar tzdata util-linux 94 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 45.9 MB of archives. After this operation, 1505 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main armhf base-files armhf 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo6 armhf 6.1+20180210-4ubuntu1 [71.2 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf debianutils armhf 4.8.6 [84.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main armhf bash armhf 4.4.18-2ubuntu2 [552 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf bsdutils armhf 1:2.32-0.1ubuntu1 [55.5 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main armhf tar armhf 1.30+dfsg-2 [218 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main armhf dpkg armhf 1.19.0.5ubuntu3 [1096 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main armhf libext2fs2 armhf 1.44.2-1 [144 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main armhf e2fsprogs armhf 1.44.2-1 [369 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-bin armhf 6.1+20180210-4ubuntu1 [155 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libperl5.26 armhf 5.26.2-6 [2870 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl armhf 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl-base armhf 5.26.2-6 [1291 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main armhf libuuid1 armhf 2.32-0.1ubuntu1 [19.2 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main armhf libblkid1 armhf 2.32-0.1ubuntu1 [115 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main armhf libfdisk1 armhf 2.32-0.1ubuntu1 [155 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw6 armhf 6.1+20180210-4ubuntu1 [104 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libselinux1 armhf 2.8-1 [59.3 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main armhf libmount1 armhf 2.32-0.1ubuntu1 [125 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main armhf libsmartcols1 armhf 2.32-0.1ubuntu1 [76.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf fdisk armhf 2.32-0.1ubuntu1 [98.7 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main armhf util-linux armhf 2.32-0.1ubuntu1 [858 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main armhf base-passwd armhf 3.5.45 [46.0 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libgomp1 armhf 8.1.0-6ubuntu1 [66.6 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf gcc-8-base armhf 8.1.0-6ubuntu1 [18.7 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libgcc1 armhf 1:8.1.0-6ubuntu1 [37.1 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libcc1-0 armhf 8.1.0-6ubuntu1 [32.7 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libatomic1 armhf 8.1.0-6ubuntu1 [7052 B] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libstdc++6 armhf 8.1.0-6ubuntu1 [349 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf liblz4-1 armhf 1.8.2-1ubuntu1 [76.1 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libudev1 armhf 238-5ubuntu1 [50.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main armhf libapt-pkg5.0 armhf 1.7.0~alpha0ubuntu1 [729 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf debconf all 1.5.67 [124 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main armhf adduser all 3.117ubuntu1 [163 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main armhf libgpg-error0 armhf 1.31-1 [48.5 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcrypt20 armhf 1.8.2-2ubuntu1 [364 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf gpgv armhf 2.2.8-1ubuntu1 [167 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main armhf apt armhf 1.7.0~alpha0ubuntu1 [1123 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main armhf libaudit-common all 1:2.8.3-1ubuntu1 [4052 B] Get:42 http://ftpmaster.internal/ubuntu cosmic/main armhf libcap-ng0 armhf 0.7.9-1 [10.1 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main armhf libaudit1 armhf 1:2.8.3-1ubuntu1 [35.4 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libkmod2 armhf 25-1ubuntu1 [35.7 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main armhf mount armhf 2.32-0.1ubuntu1 [97.4 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses6 armhf 6.1+20180210-4ubuntu1 [78.5 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libprocps7 armhf 2:3.3.15-2ubuntu1 [29.6 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf procps armhf 2:3.3.15-2ubuntu1 [219 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf systemd armhf 238-5ubuntu1 [2756 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsystemd0 armhf 238-5ubuntu1 [189 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf systemd-sysv armhf 238-5ubuntu1 [13.5 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main armhf libcom-err2 armhf 1.44.2-1 [8404 B] Get:53 http://ftpmaster.internal/ubuntu cosmic/main armhf libsepol1 armhf 2.8-1 [219 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsemanage-common all 2.8-1 [7020 B] Get:55 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsemanage1 armhf 2.8-1 [72.9 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main armhf libss2 armhf 1.44.2-1 [9392 B] Get:57 http://ftpmaster.internal/ubuntu cosmic/main armhf libgmp10 armhf 2:6.1.2+dfsg-3 [182 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main armhf libp11-kit0 armhf 0.23.12-2 [163 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main armhf libtasn1-6 armhf 4.13-3 [31.1 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses5 armhf 6.1+20180210-4ubuntu1 [74.9 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw5 armhf 6.1+20180210-4ubuntu1 [95.3 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo5 armhf 6.1+20180210-4ubuntu1 [67.6 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main armhf libprocps6 armhf 2:3.3.12-3ubuntu2 [28.5 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main armhf libargon2-0 armhf 0~20161029-2 [20.5 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main armhf readline-common all 7.0-5 [52.2 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main armhf libreadline7 armhf 7.0-5 [102 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main armhf libslang2 armhf 2.3.2-1ubuntu1 [383 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsqlite3-0 armhf 3.24.0-1 [429 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main armhf tzdata all 2018e-1 [188 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main armhf libbinutils armhf 2.30-21ubuntu1 [308 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-common armhf 2.30-21ubuntu1 [193 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils armhf 2.30-21ubuntu1 [3348 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-arm-linux-gnueabihf armhf 2.30-21ubuntu1 [2175 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libasan4 armhf 7.3.0-22ubuntu1 [328 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libubsan0 armhf 7.3.0-22ubuntu1 [108 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libcilkrts5 armhf 7.3.0-22ubuntu1 [35.9 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf g++-7 armhf 7.3.0-22ubuntu1 [6050 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf gcc-7 armhf 7.3.0-22ubuntu1 [5950 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libstdc++-7-dev armhf 7.3.0-22ubuntu1 [1536 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libgcc-7-dev armhf 7.3.0-22ubuntu1 [710 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf cpp-7 armhf 7.3.0-22ubuntu1 [5292 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf gcc-7-base armhf 7.3.0-22ubuntu1 [18.7 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main armhf cpp armhf 4:7.3.0-3ubuntu3 [27.6 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc armhf 4:7.3.0-3ubuntu3 [5228 B] Get:85 http://ftpmaster.internal/ubuntu cosmic/main armhf g++ armhf 4:7.3.0-3ubuntu3 [1600 B] Get:86 http://ftpmaster.internal/ubuntu cosmic/main armhf dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main armhf libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main armhf build-essential armhf 12.5ubuntu2 [4732 B] Get:89 http://ftpmaster.internal/ubuntu cosmic/main armhf e2fslibs armhf 1.44.2-1 [2700 B] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf pinentry-curses armhf 1.1.0-1build1 [31.4 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main armhf libnpth0 armhf 1.5-4 [6648 B] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf gpg armhf 2.2.8-1ubuntu1 [411 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf gpgconf armhf 2.2.8-1ubuntu1 [105 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf gpg-agent armhf 2.2.8-1ubuntu1 [189 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main armhf libcomerr2 armhf 1.44.2-1 [2700 B] Get:96 http://ftpmaster.internal/ubuntu cosmic/main armhf libusb-0.1-4 armhf 2:0.1.12-32 [15.6 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf linux-libc-dev armhf 4.15.0-24.26 [979 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main armhf pkgbinarymangler all 139 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.9 MB in 4s (11.9 MB/s) (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_armhf.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:armhf. (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_armhf.deb ... Unpacking libtinfo6:armhf (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:armhf (6.1+20180210-4ubuntu1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_armhf.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_armhf.deb ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15023449 armhf cosmic-proposed -c chroot:build-PACKAGEBUILD-15023449 --arch=armhf --dist=cosmic-proposed --nolog gromacs_2018.2-1.dsc Initiating build PACKAGEBUILD-15023449 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:17:06 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-032.buildd +==============================================================================+ | gromacs 2018.2-1 (armhf) 16 Jun 2018 23:12 | +==============================================================================+ Package: gromacs Version: 2018.2-1 Source Version: 2018.2-1 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/gromacs-ds3xGT/gromacs-2018.2' with '<>' I: NOTICE: Log filtering will replace 'build/gromacs-ds3xGT' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15023449/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- gromacs_2018.2-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-vQBBqj/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-vQBBqj/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vQBBqj/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-vQBBqj/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vQBBqj/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-vQBBqj/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (137 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libncursesw5 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 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Merged Build-Depends: chrpath, cmake, debhelper (>= 10), libblas-dev, libboost-dev, libfftw3-dev, liblapack-dev, libmpich-dev (>= 3.0.4-6), libopenmpi-dev (>= 1.10.2-7), libtinyxml-dev, libx11-dev, mpich, openmpi-bin, zlib1g-dev Filtered Build-Depends: chrpath, cmake, debhelper (>= 10), libblas-dev, libboost-dev, libfftw3-dev, liblapack-dev, libmpich-dev (>= 3.0.4-6), libopenmpi-dev (>= 1.10.2-7), libtinyxml-dev, libx11-dev, mpich, openmpi-bin, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-gromacs-dummy' in '/<>/resolver-dvwZL0/apt_archive/sbuild-build-depends-gromacs-dummy.deb'. Ign:1 copy:/<>/resolver-dvwZL0/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dvwZL0/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-dvwZL0/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dvwZL0/apt_archive ./ Sources [301 B] Get:5 copy:/<>/resolver-dvwZL0/apt_archive ./ Packages [618 B] Fetched 3038 B in 0s (133 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install gromacs build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libncursesw5 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-7 groff-base hwloc-nox ibverbs-providers intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.65-dev libbsd0 libcroco3 libcurl4 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libibverbs-dev libibverbs1 libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libltdl-dev libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmpich-dev libmpich12 libnghttp2-14 libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsl5 libpthread-stubs0-dev librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssl1.0.0 libtimedate-perl libtinyxml-dev libtinyxml2.6.2v5 libtool libuv1 libwind0-heimdal libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 m4 man-db mpich ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff lrzip liblapack-doc libboost-doc libboost1.65-doc libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-context1.65-dev libboost-coroutine1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-fiber1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-iostreams1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-regex1.65-dev libboost-serialization1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-test1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev libfftw3-doc krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils libtinyxml-doc gcj-jdk libxcb-doc m4-doc apparmor less www-browser mpich-doc opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libx11-doc xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-7 groff-base hwloc-nox ibverbs-providers intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.65-dev libbsd0 libcroco3 libcurl4 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libibverbs-dev libibverbs1 libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libltdl-dev libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmpich-dev libmpich12 libnghttp2-14 libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsl5 libpthread-stubs0-dev librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssl1.0.0 libtimedate-perl libtinyxml-dev libtinyxml2.6.2v5 libtool libuv1 libwind0-heimdal libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 m4 man-db mpich ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-gromacs-dummy x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 121 newly installed, 0 to remove and 0 not upgraded. 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Unpacking hwloc-nox (1.11.10-1) ... Selecting previously unselected package libhwloc-dev:armhf. Preparing to unpack .../114-libhwloc-dev_1.11.10-1_armhf.deb ... Unpacking libhwloc-dev:armhf (1.11.10-1) ... Selecting previously unselected package libibverbs-dev:armhf. Preparing to unpack .../115-libibverbs-dev_17.1-2_armhf.deb ... Unpacking libibverbs-dev:armhf (17.1-2) ... Selecting previously unselected package libmpich12:armhf. Preparing to unpack .../116-libmpich12_3.3~b2-7_armhf.deb ... Unpacking libmpich12:armhf (3.3~b2-7) ... Selecting previously unselected package mpich. Preparing to unpack .../117-mpich_3.3~b2-7_armhf.deb ... Unpacking mpich (3.3~b2-7) ... Selecting previously unselected package libmpich-dev:armhf. Preparing to unpack .../118-libmpich-dev_3.3~b2-7_armhf.deb ... Unpacking libmpich-dev:armhf (3.3~b2-7) ... Selecting previously unselected package libopenmpi-dev:armhf. Preparing to unpack .../119-libopenmpi-dev_3.1.0-7_armhf.deb ... Unpacking libopenmpi-dev:armhf (3.1.0-7) ... Selecting previously unselected package sbuild-build-depends-gromacs-dummy. Preparing to unpack .../120-sbuild-build-depends-gromacs-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-gromacs-dummy (0.invalid.0) ... Setting up chrpath (0.16-2) ... Setting up libedit2:armhf (3.1-20180525-1) ... Setting up libexpat1:armhf (2.2.5-3) ... Setting up libicu60:armhf (60.2-6ubuntu1) ... Setting up libmpich12:armhf (3.3~b2-7) ... Setting up libevent-2.1-6:armhf (2.1.8-stable-4build1) ... Setting up libtinyxml2.6.2v5:armhf (2.6.2-4) ... Setting up libevent-core-2.1-6:armhf (2.1.8-stable-4build1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libssl1.0.0:armhf (1.0.2n-1ubuntu5) ... Setting up libnghttp2-14:armhf (1.30.0-1ubuntu1) ... Setting up libtinyxml-dev:armhf (2.6.2-4) ... Setting up libgfortran4:armhf (7.3.0-22ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu1) ... Setting up libpthread-stubs0-dev:armhf (0.3-4) ... Setting up libuv1:armhf (1.20.3-2) ... Setting up libpsl5:armhf (0.20.2-1) ... Setting up libelf1:armhf (0.170-0.4) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up cmake-data (3.11.2-1) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up libroken18-heimdal:armhf (7.5.0+dfsg-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:armhf (3.3.7-1build1) ... Setting up libbsd0:armhf (0.9.1-1) ... Setting up libkrb5support0:armhf (1.16-2build1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7) ... Setting up x11proto-dev (2018.4-4) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:armhf (1:5.33-3) ... Setting up librhash0:armhf (1.3.6-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libblas3:armhf (3.8.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libevent-pthreads-2.1-6:armhf (2.1.8-stable-4build1) ... Setting up openmpi-common (3.1.0-7) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:armhf (7.5.0+dfsg-2) ... Setting up libltdl7:armhf (2.4.6-2.1) ... Setting up libgfortran-7-dev:armhf (7.3.0-22ubuntu1) ... Setting up libpciaccess0:armhf (0.14-1) ... Setting up libfftw3-single3:armhf (3.3.7-1build1) ... Setting up gfortran-7 (7.3.0-22ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up ocl-icd-libopencl1:armhf (2.2.11-1ubuntu1) ... Setting up libkeyutils1:armhf (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:armhf (3.2.29-0ubuntu3) ... Setting up libboost1.65-dev:armhf (1.65.1+dfsg-0ubuntu6) ... Setting up libx11-data (2:1.6.5-1) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up liblzo2-2:armhf (2.10-0.1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjsoncpp1:armhf (1.7.4-3) ... Setting up gfortran (4:7.3.0-3ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libk5crypto3:armhf (1.16-2build1) ... Setting up libfftw3-bin (3.3.7-1build1) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libltdl-dev:armhf (2.4.6-2.1) ... Setting up libwind0-heimdal:armhf (7.5.0+dfsg-2) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libblas-dev:armhf (3.8.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libarchive13:armhf (3.2.2-4) ... Setting up libasn1-8-heimdal:armhf (7.5.0+dfsg-2) ... Setting up liblapack3:armhf (3.8.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-2) ... Setting up libxau-dev:armhf (1:1.0.8-1) ... Setting up libnl-route-3-200:armhf (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up libhwloc5:armhf (1.11.10-1) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-2) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libfftw3-dev:armhf (3.3.7-1build1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:armhf (1.16-2build1) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-2) ... Setting up libboost-dev:armhf (1.65.1.0ubuntu1) ... Setting up libxcb1:armhf (1.13-1) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-2) ... Setting up liblapack-dev:armhf (3.8.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libtool (2.4.6-2.1) ... Setting up hwloc-nox (1.11.10-1) ... Setting up libibverbs1:armhf (17.1-2) ... Setting up mpich (3.3~b2-7) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:armhf (1.11.10-1) ... Setting up libx11-6:armhf (2:1.6.5-1) ... Setting up libpmix2:armhf (2.1.1-2) ... Setting up libgssapi-krb5-2:armhf (1.16-2build1) ... Setting up libmpich-dev:armhf (3.3~b2-7) ... Setting up ibverbs-providers:armhf (17.1-2) ... Setting up libxcb1-dev:armhf (1.13-1) ... Setting up libx11-dev:armhf (2:1.6.5-1) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-2) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libibverbs-dev:armhf (17.1-2) ... Setting up libopenmpi3:armhf (3.1.0-7) ... Setting up openmpi-bin (3.1.0-7) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libldap-2.4-2:armhf (2.4.46+dfsg-5ubuntu1) ... Setting up libopenmpi-dev:armhf (3.1.0-7) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up libcurl4:armhf (7.60.0-2ubuntu1) ... Setting up cmake (3.11.2-1) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-gromacs-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-21ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-22ubuntu1 gcc-7_7.3.0-22ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-22ubuntu1 libstdc++6_8.1.0-6ubuntu1 linux-libc-dev_4.15.0-24.26 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-21ubuntu1 binutils-arm-linux-gnueabihf_2.30-21ubuntu1 binutils-common_2.30-21ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 chrpath_0.16-2 cmake_3.11.2-1 cmake-data_3.11.2-1 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-22ubuntu1 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-22ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-22ubuntu1 gcc-7-base_7.3.0-22ubuntu1 gcc-8-base_8.1.0-6ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gfortran_4:7.3.0-3ubuntu3 gfortran-7_7.3.0-22ubuntu1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 hwloc-nox_1.11.10-1 ibverbs-providers_17.1-2 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-4 libargon2-0_0~20161029-2 libasan4_7.3.0-22ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2 libassuan0_2.5.1-2 libatomic1_8.1.0-6ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu1 libaudit1_1:2.8.3-1ubuntu1 libbinutils_2.30-21ubuntu1 libblas-dev_3.8.0-1 libblas3_3.8.0-1 libblkid1_2.32-0.1ubuntu1 libboost-dev_1.65.1.0ubuntu1 libboost1.65-dev_1.65.1+dfsg-0ubuntu6 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-6ubuntu1 libcilkrts5_7.3.0-22ubuntu1 libcom-err2_1.44.2-1 libcomerr2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libcurl4_7.60.0-2ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20180525-1 libelf1_0.170-0.4 libevent-2.1-6_2.1.8-stable-4build1 libevent-core-2.1-6_2.1.8-stable-4build1 libevent-pthreads-2.1-6_2.1.8-stable-4build1 libexpat1_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfftw3-bin_3.3.7-1build1 libfftw3-dev_3.3.7-1build1 libfftw3-double3_3.3.7-1build1 libfftw3-single3_3.3.7-1build1 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-22ubuntu1 libgcc1_1:8.1.0-6ubuntu1 libgcrypt20_1.8.2-2ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran-7-dev_7.3.0-22ubuntu1 libgfortran4_7.3.0-22ubuntu1 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-6ubuntu1 libgpg-error0_1.31-1 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-2 libhcrypto4-heimdal_7.5.0+dfsg-2 libheimbase1-heimdal_7.5.0+dfsg-2 libheimntlm0-heimdal_7.5.0+dfsg-2 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libhx509-5-heimdal_7.5.0+dfsg-2 libibverbs-dev_17.1-2 libibverbs1_17.1-2 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu3 libkmod2_25-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-2 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 liblapack-dev_3.8.0-1 liblapack3_3.8.0-1 libldap-2.4-2_2.4.46+dfsg-5ubuntu1 libldap-common_2.4.46+dfsg-5ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpich-dev_3.3~b2-7 libmpich12_3.3~b2-7 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.30.0-1ubuntu1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-4 libopenmpi-dev_3.1.0-7 libopenmpi3_3.1.0-7 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpmix2_2.1.1-2 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-1 libpthread-stubs0-dev_0.3-4 libreadline7_7.0-5 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-22ubuntu1 libstdc++6_8.1.0-6ubuntu1 libsystemd0_238-5ubuntu1 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtinyxml-dev_2.6.2-4 libtinyxml2.6.2v5_2.6.2-4 libtool_2.4.6-2.1 libubsan0_7.3.0-22ubuntu1 libudev1_238-5ubuntu1 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libuv1_1.20.3-2 libwind0-heimdal_7.5.0+dfsg-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-24.26 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 mpich_3.3~b2-7 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.1.0-7 openmpi-common_3.1.0-7 openssh-client_1:7.7p1-2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build1 pkgbinarymangler_139 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gromacs-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-5ubuntu1 systemd-sysv_238-5ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Jun 16 17:54:26 2018 UTC gpgv: using RSA key 843E5FA61E6063389876D2E5EE4AFD69EC65108F gpgv: issuer "nbreen@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gromacs_2018.2-1.dsc dpkg-source: info: extracting gromacs in gromacs-2018.2 dpkg-source: info: unpacking gromacs_2018.2.orig.tar.gz dpkg-source: info: unpacking gromacs_2018.2-1.debian.tar.xz dpkg-source: info: applying readme.patch dpkg-source: info: applying copyright-file.patch dpkg-source: info: applying reproducible-builds.patch dpkg-source: info: applying doxygen.patch dpkg-source: info: applying disable-cpuinfotest.patch dpkg-source: info: applying hurd-disable-numa-test.patch dpkg-source: info: applying mdrun-test-timeout.patch dpkg-source: info: applying sphinx-version-detect.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15023449 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15023449 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15023449 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package gromacs dpkg-buildpackage: info: source version 2018.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build gromacs-2018.2 dpkg-buildpackage: info: host architecture armhf debian/rules clean dh_testdir dh_testroot rm -rf build docs/doxygen/*.pyc dh_clean build-basic build-mpich build-openmpi build-manual configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian debian/rules binary-arch dh_testdir (mkdir -p build/basic; cd build/basic; cmake /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=OFF -DGMX_X11=ON -DBUILD_SHARED_LIBS=ON) -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib/arm-linux-gnueabihf/libX11.so -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-06-16 17:24:50 -- Setting build host - Linux armv7l -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv8 Processor rev 1 (v8l) -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3f, trying generic detection -- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=OFF -DGMX_X11=ON -DBUILD_SHARED_LIBS=ON -DGMX_DOUBLE=ON) -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:57 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:225 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib/arm-linux-gnueabihf/libX11.so -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-06-16 17:24:50 -- Setting build host - Linux armv7l -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv8 Processor rev 1 (v8l) -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3, trying generic detection -- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich CXX=/usr/bin/mpicxx.mpich cmake \ /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DMPIEXEC="/usr/bin/mpiexec.mpich" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/mpicc.mpich -- Check for working C compiler: /usr/bin/mpicc.mpich -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-06-16 17:24:50 -- Setting build host - Linux armv7l -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv8 Processor rev 1 (v8l) -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3f, trying generic detection -- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich CXX=/usr/bin/mpicxx.mpich cmake \ /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DMPIEXEC="/usr/bin/mpiexec.mpich" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/mpicc.mpich -- Check for working C compiler: /usr/bin/mpicc.mpich -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:57 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:225 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-06-16 17:24:50 -- Setting build host - Linux armv7l -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv8 Processor rev 1 (v8l) -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3, trying generic detection -- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/mpich-dp (mkdir -p build/openmpi; cd build/openmpi; CC=/usr/bin/mpicc.openmpi CXX=/usr/bin/mpicxx.openmpi cmake \ /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DMPIEXEC="/usr/bin/mpiexec.openmpi" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_BINARY_SUFFIX="_mpi.openmpi" -DGMX_LIBS_SUFFIX="_mpi.openmpi") -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-06-16 17:24:50 -- Setting build host - Linux armv7l -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv8 Processor rev 1 (v8l) -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3f, trying generic detection -- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpi.openmpi" -- Using manually set library suffix: "_mpi.openmpi" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/openmpi (mkdir -p build/openmpi-dp; cd build/openmpi-dp; CC=/usr/bin/mpicc.openmpi CXX=/usr/bin/mpicxx.openmpi cmake \ /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=None -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DMPIEXEC="/usr/bin/mpiexec.openmpi" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.openmpi" -DGMX_LIBS_SUFFIX="_mpi_d.openmpi") -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:57 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:225 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/arm-linux-gnueabihf/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so -- Looking for zlibVersion in /usr/lib/arm-linux-gnueabihf/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-06-16 17:24:50 -- Setting build host - Linux armv7l -- Detected build CPU vendor - ARM -- Detected build CPU brand - ARMv8 Processor rev 1 (v8l) -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3, trying generic detection -- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_plan_r2r_1d in /usr/lib/arm-linux-gnueabihf/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/arm-linux-gnueabihf/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpi_d.openmpi" -- Using manually set library suffix: "_mpi_d.openmpi" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/openmpi-dp touch configure-stamp dh_testdir /usr/bin/make -j4 -C build/basic make[1]: Entering directory '/<>/build/basic' /usr/bin/cmake -H/<> -B/<>/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles /<>/build/basic/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build Scanning dependencies of target mdrun_test_objlib make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c Scanning dependencies of target view_objlib make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /<>/src/programs/mdrun/tests/energyreader.cpp make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /<>/src/programs/view/3dview.cpp Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /<>/src/programs/view/buttons.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /<>/src/programs/view/dialogs.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /<>/src/programs/view/fgrid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /<>/src/programs/view/filter.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /<>/src/programs/view/logo.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /<>/src/programs/view/manager.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /<>/src/programs/view/molps.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /<>/src/programs/view/nleg.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o -c /<>/src/programs/mdrun/tests/mdruncomparisonfixture.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /<>/src/programs/view/nmol.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /<>/src/programs/view/popup.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /<>/src/programs/view/pulldown.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /<>/src/programs/view/view.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /<>/src/programs/view/x11.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /<>/src/programs/view/xdlg.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /<>/src/programs/mdrun/tests/moduletest.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /<>/src/programs/view/xdlghi.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /<>/src/programs/view/xdlgitem.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /<>/src/programs/view/xmb.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /<>/src/programs/mdrun/tests/terminationhelper.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /<>/src/programs/view/xutil.cpp make[3]: Leaving directory '/<>/build/basic' [ 1%] Built target view_objlib cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c make[3]: Leaving directory '/<>/build/basic' [ 1%] Built target mdrun_test_objlib cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c make[3]: Leaving directory '/<>/build/basic' [ 1%] Built target mdrun_objlib make[3]: Leaving directory '/<>/build/basic' [ 2%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/basic/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/basic/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. 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-I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/basic/src/gromacs && 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c 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-I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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-I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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-I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/mdtypes/state.h:59, from /<>/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/mdtypes/state.h:59, from /<>/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/7/bits/stl_vector.h: In function ‘void init_gtc_state(t_state*, int, int, int)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<>/src/gromacs/tables/forcetable.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<>/src/gromacs/tables/quadraticsplinetable.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<>/src/gromacs/tables/splineutil.cpp /<>/src/gromacs/tables/cubicsplinetable.cpp: In constructor ‘gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)’: /<>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 /<>/src/gromacs/tables/splineutil.cpp: In function ‘real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:210:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp: In function ‘real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:287:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<>/src/gromacs/timing/cyclecounter.cpp /<>/src/gromacs/tables/splineutil.cpp: In function ‘void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<>/src/gromacs/timing/wallcycle.cpp /<>/src/gromacs/tables/splineutil.cpp: In function ‘std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)’: /<>/src/gromacs/tables/splineutil.cpp:306:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 vectorSecondDerivative(ArrayRef f, double spacing) ^~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<>/src/gromacs/timing/walltime_accounting.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<>/src/gromacs/topology/atomprop.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<>/src/gromacs/topology/atoms.cpp /<>/src/gromacs/tables/quadraticsplinetable.cpp: In constructor ‘gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)’: /<>/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); ^ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<>/src/gromacs/topology/atomsbuilder.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<>/src/gromacs/topology/block.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<>/src/gromacs/topology/idef.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<>/src/gromacs/topology/ifunc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<>/src/gromacs/topology/index.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<>/src/gromacs/topology/invblock.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<>/src/gromacs/topology/mtop_util.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /<>/src/gromacs/topology/residuetypes.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /<>/src/gromacs/topology/symtab.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /<>/src/gromacs/topology/topology.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /<>/src/gromacs/topology/topsort.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /<>/src/gromacs/utility/alignedallocator.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /<>/src/gromacs/utility/basenetwork.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /<>/src/gromacs/utility/baseversion.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /<>/src/gromacs/utility/binaryinformation.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /<>/src/gromacs/utility/compare.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /<>/src/gromacs/utility/coolstuff.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /<>/src/gromacs/utility/cstringutil.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /<>/src/gromacs/utility/datafilefinder.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /<>/src/gromacs/utility/directoryenumerator.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /<>/src/gromacs/utility/errorcodes.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /<>/src/gromacs/utility/errorformat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /<>/src/gromacs/utility/fileredirector.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /<>/src/gromacs/utility/filestream.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /<>/src/gromacs/utility/futil.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /<>/src/gromacs/utility/gmxassert.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /<>/src/gromacs/utility/gmxomp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<>/src/gromacs/utility/gmxregex.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<>/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /<>/src/gromacs/utility/init.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /<>/src/gromacs/utility/inmemoryserializer.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /<>/src/gromacs/utility/int64_to_int.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/keyvaluetreeserializer.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/keyvaluetreetransform.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<>/src/gromacs/utility/logger.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<>/src/gromacs/utility/pleasecite.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /<>/src/gromacs/utility/programcontext.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops 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-I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /<>/src/gromacs/utility/stringstream.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ 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-I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /<>/src/gromacs/fileio/vmdio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /<>/src/external/vmd_molfile/vmddlopen.c cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/biasparams.h:53, from /<>/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/awh.h:69, from /<>/src/gromacs/awh/awh.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp: In member function ‘void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)’: /<>/src/gromacs/awh/bias.cpp:376:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, ^~~~ /<>/src/gromacs/awh/bias.cpp:397:45: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/gromacs/awh/bias.cpp:68:0: /<>/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp: In member function ‘gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, gmx_int64_t, gmx_int64_t, FILE*)’: /<>/src/gromacs/awh/bias.cpp:142:39: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 updateForceCorrelationGrid(probWeightNeighbor, t); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tempForce_, biasForce_); ~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:170:19: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 potential = ~~~~~~~~~~^ state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); ^ /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx::AwhParams&, const string&, pull_t*)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp /<>/src/gromacs/awh/biasstate.cpp: In function ‘void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)’: /<>/src/gromacs/awh/biasstate.cpp:294:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void updateTargetDistribution(gmx::ArrayRef pointState, ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/coordstate.cpp: In member function ‘void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, gmx_int64_t, gmx_int64_t, int)’: /<>/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 CoordState::sampleUmbrellaGridpoint(const Grid &grid, ^~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const’: /<>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const’: /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::calcConvolvedForce(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:464:38: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ forceFromNeighbor); ~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx_int64_t, gmx_int64_t, int)’: /<>/src/gromacs/awh/biasstate.cpp:475:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double BiasState::moveUmbrella(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:475:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:484:40: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:484:40: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:488:98: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce); ^ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)’: /<>/src/gromacs/awh/biasstate.cpp:1232:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::sampleProbabilityWeights(const Grid &grid, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)’: /<>/src/gromacs/awh/biasstate.cpp:1287:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::sampleCoordAndPmf(const Grid &grid, ^~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp /<>/src/gromacs/awh/correlationtensor.cpp: In member function ‘void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)’: /<>/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void CorrelationTensor::addData(double weight, ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/correlationtensor.h:51, from /<>/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::CorrelationBlockData}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::CorrelationTensor::CorrelationTensor(int, int, double)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, gmx_int64_t, FILE*, std::vector*)’: /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); ^ /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/histogramsize.cpp: In member function ‘double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)’: /<>/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, ^~~~~~~~~~~~~ /<>/src/gromacs/awh/histogramsize.cpp: In member function ‘double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)’: /<>/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double HistogramSize::newHistogramSize(const BiasParams ¶ms, ^~~~~~~~~~~~~ /<>/src/gromacs/awh/histogramsize.cpp:242:26: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/histogramsize.cpp:242:26: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/dimparams.h:52, from /<>/src/gromacs/awh/grid.h:60, from /<>/src/gromacs/awh/grid.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::GridAxis}; _Tp = gmx::GridAxis; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In function ‘void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /<>/src/gromacs/gmxana/anadih.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /<>/src/gromacs/gmxana/binsearch.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /<>/src/gromacs/gmxana/cmat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /<>/src/gromacs/gmxana/dens_filter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /<>/src/gromacs/gmxana/dlist.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /<>/src/gromacs/gmxana/eigio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /<>/src/gromacs/gmxana/fitahx.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /<>/src/gromacs/gmxana/gmx_anadock.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /<>/src/gromacs/gmxana/gmx_anaeig.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /<>/src/gromacs/gmxana/gmx_analyze.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /<>/src/gromacs/gmxana/gmx_angle.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /<>/src/gromacs/gmxana/gmx_awh.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /<>/src/gromacs/gmxana/gmx_bar.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /<>/src/gromacs/gmxana/gmx_bundle.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /<>/src/gromacs/gmxana/gmx_clustsize.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /<>/src/gromacs/gmxana/gmx_confrms.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /<>/src/gromacs/gmxana/gmx_covar.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /<>/src/gromacs/gmxana/gmx_current.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /<>/src/gromacs/gmxana/gmx_density.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /<>/src/gromacs/gmxana/nrama.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /<>/src/gromacs/gmxana/nsfactor.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /<>/src/gromacs/gmxana/powerspect.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /<>/src/gromacs/gmxpreprocess/calch.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_ad.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /<>/src/gromacs/gmxpreprocess/nm2type.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /<>/src/gromacs/selection/selectionoptionbehavior.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /<>/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /<>/src/gromacs/trajectoryanalysis/runnercommon.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/angle.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/distance.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/pairdist.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /<>/src/gromacs/trajectoryanalysis/modules/freevolume.h:45, from /<>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::analysismodules::{anonymous}::FreeVolume::initAnalysis(const gmx::TrajectoryAnalysisSettings&, const gmx::TopologyInformation&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/rdf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/sasa.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/select.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/trajectory.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /<>/src/gromacs/tools/check.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /<>/src/gromacs/tools/convert_tpr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /<>/src/gromacs/tools/dump.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<>/src/gromacs/gmxlib/chargegroup.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<>/src/gromacs/gmxlib/conformation-utilities.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<>/src/gromacs/gmxlib/network.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src 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/<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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/usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src 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-I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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/<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src 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/<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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/<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<>/src/gromacs/mdlib/ns.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd 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-I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<>/src/gromacs/mdlib/qm_mopac.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<>/src/gromacs/mdlib/vsite.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<>/src/gromacs/mdlib/wall.cpp cd 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /<>/src/gromacs/options/abstractoption.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<>/src/gromacs/options/behaviorcollection.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /<>/src/gromacs/options/filenameoption.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/filenameoptionmanager.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<>/src/gromacs/options/options.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<>/src/gromacs/options/optionsassigner.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<>/src/gromacs/options/optionsection.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /<>/src/gromacs/options/optionsvisitor.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /<>/src/gromacs/options/timeunitmanager.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<>/src/gromacs/options/treesupport.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /<>/src/gromacs/taskassignment/decidegpuusage.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /<>/src/gromacs/taskassignment/findallgputasks.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<>/src/gromacs/taskassignment/reportgpuusage.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/options/basicoptions.h:50, from /<>/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/options/basicoptions.h:50, from /<>/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<>/src/gromacs/taskassignment/resourcedivision.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<>/src/gromacs/taskassignment/taskassignment.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/usergpuids.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /<>/src/gromacs/trajectory/trajectoryframe.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -c /<>/src/external/thread_mpi/src/errhandler.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /<>/src/external/thread_mpi/src/tmpi_malloc.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<>/src/external/thread_mpi/src/atomic.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /<>/src/external/thread_mpi/src/lock.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o -c /<>/src/external/thread_mpi/src/pthreads.c cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o -c /<>/src/external/thread_mpi/src/system_error.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/alltoall.c.o -c /<>/src/external/thread_mpi/src/alltoall.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_protocol.c.o -c /<>/src/external/thread_mpi/src/p2p_protocol.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o -c /<>/src/external/thread_mpi/src/barrier.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o -c /<>/src/external/thread_mpi/src/p2p_send_recv.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o -c /<>/src/external/thread_mpi/src/bcast.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_wait.c.o -c /<>/src/external/thread_mpi/src/p2p_wait.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/collective.c.o -c /<>/src/external/thread_mpi/src/collective.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o -c /<>/src/external/thread_mpi/src/profile.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o -c /<>/src/external/thread_mpi/src/comm.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o -c /<>/src/external/thread_mpi/src/reduce.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o -c /<>/src/external/thread_mpi/src/event.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o -c /<>/src/external/thread_mpi/src/reduce_fast.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o -c /<>/src/external/thread_mpi/src/gather.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o -c /<>/src/external/thread_mpi/src/scatter.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o -c /<>/src/external/thread_mpi/src/group.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o -c /<>/src/external/thread_mpi/src/tmpi_init.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o -c /<>/src/external/thread_mpi/src/topology.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o -c /<>/src/external/thread_mpi/src/list.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o -c /<>/src/external/thread_mpi/src/type.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o -c /<>/src/external/thread_mpi/src/scan.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o -c /<>/src/external/thread_mpi/src/numa_malloc.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o -c /<>/src/external/thread_mpi/src/once.c cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o -c /<>/src/external/lmfit/lmmin.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -c /<>/build/basic/src/gromacs/utility/baseversion-gen.c cd /<>/build/basic/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libgromacs.so.3 -o ../../lib/libgromacs.so.3.2.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib/arm-linux-gnueabihf/libhwloc.so -ldl -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so -lpthread -fopenmp -lm /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lpthread -lm cd /<>/build/basic/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.3.2.0 ../../lib/libgromacs.so.3 ../../lib/libgromacs.so make[3]: Leaving directory '/<>/build/basic' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/template /<>/build/basic /<>/build/basic/share/template /<>/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Scanning dependencies of target gmx make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. 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-I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /<>/share/template/template.cpp cd /<>/build/basic/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.3.2.0 -fopenmp /usr/lib/arm-linux-gnueabihf/libX11.so -lm make[3]: Leaving directory '/<>/build/basic' [100%] Built target gmx cd /<>/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.3.2.0 -fopenmp -lm make[3]: Leaving directory '/<>/build/basic' [100%] Built target template make[2]: Leaving directory '/<>/build/basic' /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles 0 make[1]: Leaving directory '/<>/build/basic' /usr/bin/make -j4 -C build/basic-dp make[1]: Entering directory '/<>/build/basic-dp' /usr/bin/cmake -H/<> -B/<>/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles /<>/build/basic-dp/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_test_objlib Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build Scanning dependencies of target view_objlib make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /<>/src/programs/mdrun/tests/energyreader.cpp make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /<>/src/programs/view/3dview.cpp Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /<>/src/programs/view/buttons.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /<>/src/programs/view/dialogs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /<>/src/programs/view/fgrid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c /<>/src/programs/mdrun/md.cpp: In function ‘double gmx::do_md(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/programs/mdrun/md.cpp:1247:21: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, ir, step, nrnb, wcycle, top, groups, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->box, state->x, &state->hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f, force_vir, mdatoms, enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->lambda, graph, ~~~~~~~~~~~~~~~~~~~~~ fr, vsite, mu_tot, t, ed, bBornRadii, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bNS ? GMX_FORCE_NS : 0) | force_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddOpenBalanceRegion, ddCloseBalanceRegion); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1247:21: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/programs/mdrun/md.cpp:1247:21: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/programs/mdrun/md.cpp:1279:26: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 update_coords(fplog, step, ir, mdatoms, state, f, fcd, ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ekind, M, upd, etrtVELOCITY1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cr, constr); ~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1286:35: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 update_constraints(fplog, step, nullptr, ir, mdatoms, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state, fr->bMolPBC, graph, f, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &top->idef, shake_vir, ~~~~~~~~~~~~~~~~~~~~~~ cr, nrnb, wcycle, upd, constr, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRUE, bCalcVir); ~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1406:25: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 sum_dhdl(enerd, state->lambda, ir->fepvals); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1431:33: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ir, state, state_global, observablesHistory, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, fr, ~~~~~~~~~~~~~~~ outf, mdebin, ekind, f, ~~~~~~~~~~~~~~~~~~~~~~~ &nchkpt, ~~~~~~~~ bCPT, bRerunMD, bLastStep, ~~~~~~~~~~~~~~~~~~~~~~~~~~ mdrunOptions.writeConfout, ~~~~~~~~~~~~~~~~~~~~~~~~~~ bSumEkinhOld); ~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1541:35: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 update_constraints(fplog, step, nullptr, ir, mdatoms, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state, fr->bMolPBC, graph, f, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &top->idef, tmp_vir, ~~~~~~~~~~~~~~~~~~~~ cr, nrnb, wcycle, upd, constr, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRUE, bCalcVir); ~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1581:30: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 update_coords(fplog, step, ir, mdatoms, state, f, fcd, ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ekind, M, upd, etrtVELOCITY2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cr, constr); ~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1602:26: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 update_coords(fplog, step, ir, mdatoms, state, f, fcd, ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ekind, M, upd, etrtPOSITION, cr, constr); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1606:31: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 update_constraints(fplog, step, &dvdl_constr, ir, mdatoms, state, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fr->bMolPBC, graph, f, ~~~~~~~~~~~~~~~~~~~~~~ &top->idef, shake_vir, ~~~~~~~~~~~~~~~~~~~~~~ cr, nrnb, wcycle, upd, constr, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ FALSE, bCalcVir); ~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1627:30: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 update_coords(fplog, step, ir, mdatoms, state, f, fcd, ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ekind, M, upd, etrtPOSITION, cr, constr); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1636:35: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 update_constraints(fplog, step, nullptr, ir, mdatoms, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state, fr->bMolPBC, graph, f, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &top->idef, tmp_vir, ~~~~~~~~~~~~~~~~~~~~ cr, nrnb, wcycle, upd, nullptr, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ FALSE, bCalcVir); ~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1741:21: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 sum_dhdl(enerd, state->lambda, ir->fepvals); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /<>/src/programs/view/filter.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /<>/src/programs/view/logo.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /<>/src/programs/view/manager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c /<>/src/programs/view/manager.cpp: In function ‘bool ManCallBack(t_x11*, XEvent*, Window, void*)’: /<>/src/programs/view/manager.cpp:371:46: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 put_atoms_in_compact_unitcell(man->molw->ePBC, ecenterDEF, man->box, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atomsArrayRef); ~~~~~~~~~~~~~~ /<>/src/programs/view/manager.cpp:371:46: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /<>/src/programs/view/molps.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /<>/src/programs/view/nleg.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o -c /<>/src/programs/mdrun/tests/mdruncomparisonfixture.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /<>/src/programs/view/nmol.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /<>/src/programs/view/popup.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /<>/src/programs/view/pulldown.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /<>/src/programs/view/view.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /<>/src/programs/view/x11.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /<>/src/programs/view/xdlg.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /<>/src/programs/mdrun/tests/moduletest.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /<>/src/programs/view/xdlghi.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /<>/src/programs/view/xdlgitem.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /<>/src/programs/view/xmb.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /<>/src/programs/mdrun/tests/terminationhelper.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /<>/src/programs/view/xutil.cpp make[3]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target view_objlib cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c make[3]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target mdrun_test_objlib cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c /<>/src/programs/mdrun/runner.cpp: In member function ‘int gmx::Mdrunner::mdrunner()’: /<>/src/programs/mdrun/runner.cpp:1221:38: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 constructVsitesGlobal(*mtop, globalState->x); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target mdrun_objlib make[3]: Leaving directory '/<>/build/basic-dp' [ 2%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/basic-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/basic-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodulemanager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<>/src/gromacs/commandline/filenm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<>/src/gromacs/commandline/pargs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<>/src/gromacs/commandline/shellcompletions.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<>/src/gromacs/commandline/viewit.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<>/src/gromacs/domdec/dlbtiming.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<>/src/gromacs/domdec/domdec.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<>/src/gromacs/domdec/domdec_box.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<>/src/gromacs/domdec/domdec_constraints.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<>/src/gromacs/domdec/domdec_network.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<>/src/gromacs/domdec/domdec_setup.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<>/src/gromacs/domdec/domdec_specatomcomm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<>/src/gromacs/domdec/domdec_topology.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<>/src/gromacs/domdec/domdec_vsite.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<>/src/gromacs/ewald/calculate-spline-moduli.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<>/src/gromacs/ewald/ewald-utils.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<>/src/gromacs/ewald/pme-gather.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/ewald/pme-gpu-internal.h:51, from /<>/src/gromacs/ewald/pme-gpu-internal.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = double*; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/ewald/pme-gpu-internal.h:51, from /<>/src/gromacs/ewald/pme-gpu-internal.cpp:47: /usr/include/c++/7/bits/stl_vector.h: In function ‘void pme_gpu_copy_common_data_from(const gmx_pme_t*)’: /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp /<>/src/gromacs/domdec/domdec.cpp: In function ‘void dd_collect_vec(gmx_domdec_t*, const t_state*, gmx::ArrayRef >, gmx::ArrayRef >)’: /<>/src/gromacs/domdec/domdec.cpp:1277:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void dd_collect_vec(gmx_domdec_t *dd, ^~~~~~~~~~~~~~ /<>/src/gromacs/domdec/domdec.cpp:1277:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 /<>/src/gromacs/domdec/domdec.cpp: In function ‘void dd_collect_state(gmx_domdec_t*, const t_state*, t_state*)’: /<>/src/gromacs/domdec/domdec.cpp:1339:23: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(dd, state_local, state_local->x, globalXRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/domdec/domdec.cpp:1344:23: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(dd, state_local, state_local->v, globalVRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/domdec/domdec.cpp:1349:23: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(dd, state_local, state_local->cg_p, globalCgpRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp /<>/src/gromacs/mdtypes/state.cpp: In function ‘real (* makeRvecArray(gmx::ArrayRef >, unsigned int))[3]’: /<>/src/gromacs/mdtypes/state.cpp:209:7: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 rvec *makeRvecArray(gmx::ArrayRef v, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/mdtypes/state.h:59, from /<>/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/mdtypes/state.h:59, from /<>/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/7/bits/stl_vector.h: In function ‘void init_gtc_state(t_state*, int, int, int)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp /<>/src/gromacs/pbcutil/pbc.cpp: In function ‘void put_atoms_in_box(int, const real (*)[3], gmx::ArrayRef >)’: /<>/src/gromacs/pbcutil/pbc.cpp:1416:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void put_atoms_in_box(int ePBC, const matrix box, gmx::ArrayRef x) ^~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<>/src/gromacs/tables/forcetable.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<>/src/gromacs/tables/quadraticsplinetable.cpp /<>/src/gromacs/pbcutil/pbc.cpp: In function ‘void put_atoms_in_triclinic_unitcell(int, const real (*)[3], gmx::ArrayRef >)’: /<>/src/gromacs/pbcutil/pbc.cpp:1476:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void put_atoms_in_triclinic_unitcell(int ecenter, const matrix box, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/pbcutil/pbc.cpp: In function ‘void put_atoms_in_compact_unitcell(int, int, const real (*)[3], gmx::ArrayRef >)’: /<>/src/gromacs/pbcutil/pbc.cpp:1534:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void put_atoms_in_compact_unitcell(int ePBC, int ecenter, const matrix box, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<>/src/gromacs/tables/splineutil.cpp /<>/src/gromacs/tables/cubicsplinetable.cpp: In constructor ‘gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)’: /<>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 /<>/src/gromacs/tables/splineutil.cpp: In function ‘real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:210:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp: In function ‘real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:287:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp: In function ‘void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/tables/splineutil.cpp: In function ‘std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)’: /<>/src/gromacs/tables/splineutil.cpp:306:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 vectorSecondDerivative(ArrayRef f, double spacing) ^~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<>/src/gromacs/timing/cyclecounter.cpp /<>/src/gromacs/tables/quadraticsplinetable.cpp: In constructor ‘gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)’: /<>/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); ^ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<>/src/gromacs/timing/wallcycle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<>/src/gromacs/timing/walltime_accounting.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<>/src/gromacs/topology/atomprop.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<>/src/gromacs/topology/atoms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<>/src/gromacs/topology/atomsbuilder.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<>/src/gromacs/topology/block.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<>/src/gromacs/topology/idef.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<>/src/gromacs/topology/ifunc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<>/src/gromacs/topology/index.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<>/src/gromacs/topology/invblock.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<>/src/gromacs/topology/mtop_util.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /<>/src/gromacs/topology/topology.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /<>/src/gromacs/topology/topsort.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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-I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /<>/src/gromacs/utility/binaryinformation.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /<>/src/gromacs/utility/compare.cpp cd 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /<>/src/gromacs/utility/directoryenumerator.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<>/src/gromacs/utility/logger.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<>/src/gromacs/utility/niceheader.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /<>/src/gromacs/utility/smalloc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /<>/src/gromacs/utility/sysinfo.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<>/src/gromacs/fileio/checkpoint.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<>/src/gromacs/fileio/filetypes.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<>/src/gromacs/fileio/g96io.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<>/src/gromacs/fileio/pdbio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<>/src/gromacs/fileio/readinp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<>/src/gromacs/fileio/timecontrol.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/fileio/tngio.cpp:46: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/fileio/tngio.cpp:46: /usr/include/c++/7/bits/stl_vector.h: In function ‘void gmx_tng_add_mtop(gmx_tng_trajectory_t, const gmx_mtop_t*)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /<>/src/gromacs/fileio/vmdio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /<>/src/external/vmd_molfile/vmddlopen.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/biasparams.h:53, from /<>/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp /<>/src/gromacs/awh/bias.cpp: In member function ‘void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)’: /<>/src/gromacs/awh/bias.cpp:376:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, ^~~~ /<>/src/gromacs/awh/bias.cpp:397:45: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/gromacs/awh/bias.cpp:68:0: /<>/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp: In member function ‘gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, gmx_int64_t, gmx_int64_t, FILE*)’: /<>/src/gromacs/awh/bias.cpp:142:39: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 updateForceCorrelationGrid(probWeightNeighbor, t); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tempForce_, biasForce_); ~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:170:19: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 potential = ~~~~~~~~~~^ state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); ^ /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/awh.h:69, from /<>/src/gromacs/awh/awh.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx::AwhParams&, const string&, pull_t*)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In function ‘void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)’: /<>/src/gromacs/awh/biasstate.cpp:294:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void updateTargetDistribution(gmx::ArrayRef pointState, ^~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp /<>/src/gromacs/awh/coordstate.cpp: In member function ‘void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, gmx_int64_t, gmx_int64_t, int)’: /<>/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 CoordState::sampleUmbrellaGridpoint(const Grid &grid, ^~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const’: /<>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const’: /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::calcConvolvedForce(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:464:38: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 calcUmbrellaForceAndPotential(dimParams, grid, indexNeighbor, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ forceFromNeighbor); ~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx_int64_t, gmx_int64_t, int)’: /<>/src/gromacs/awh/biasstate.cpp:475:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double BiasState::moveUmbrella(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:475:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:484:40: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:484:40: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:488:98: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 calcUmbrellaForceAndPotential(dimParams, grid, coordState_.umbrellaGridpoint(), newForce); ^ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)’: /<>/src/gromacs/awh/biasstate.cpp:1232:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::sampleProbabilityWeights(const Grid &grid, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)’: /<>/src/gromacs/awh/biasstate.cpp:1287:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::sampleCoordAndPmf(const Grid &grid, ^~~~~~~~~ /<>/src/gromacs/awh/correlationtensor.cpp: In member function ‘void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)’: /<>/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void CorrelationTensor::addData(double weight, ^~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/correlationtensor.h:51, from /<>/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::CorrelationBlockData}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::CorrelationTensor::CorrelationTensor(int, int, double)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, gmx_int64_t, FILE*, std::vector*)’: /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); ^ /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/histogramsize.cpp: In member function ‘double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)’: /<>/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, ^~~~~~~~~~~~~ /<>/src/gromacs/awh/histogramsize.cpp: In member function ‘double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)’: /<>/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double HistogramSize::newHistogramSize(const BiasParams ¶ms, ^~~~~~~~~~~~~ /<>/src/gromacs/awh/histogramsize.cpp:242:26: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 newHistogramSize = newHistogramSizeInitialStage(params, t, covered, weightsumCovering, fplog); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/histogramsize.cpp:242:26: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/dimparams.h:52, from /<>/src/gromacs/awh/grid.h:60, from /<>/src/gromacs/awh/grid.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::GridAxis}; _Tp = gmx::GridAxis; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In function ‘void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /<>/src/gromacs/gmxana/anadih.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /<>/src/gromacs/gmxana/binsearch.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /<>/src/gromacs/gmxana/cmat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /<>/src/gromacs/gmxana/dens_filter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /<>/src/gromacs/gmxana/dlist.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /<>/src/gromacs/gmxana/eigio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /<>/src/gromacs/gmxana/fitahx.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /<>/src/gromacs/gmxana/gmx_anadock.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /<>/src/gromacs/gmxana/gmx_anaeig.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /<>/src/gromacs/gmxana/gmx_analyze.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /<>/src/gromacs/gmxana/gmx_angle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /<>/src/gromacs/gmxana/gmx_awh.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /<>/src/gromacs/gmxana/gmx_bar.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/fileio/xvgr.h:43, from /<>/src/gromacs/gmxana/gmx_awh.cpp:61: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/fileio/xvgr.h:43, from /<>/src/gromacs/gmxana/gmx_awh.cpp:61: /usr/include/c++/7/bits/stl_vector.h: In function ‘int gmx_awh(int, char**)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /<>/src/gromacs/gmxana/gmx_bundle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /<>/src/gromacs/gmxana/gmx_chi.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /<>/src/gromacs/gmxana/gmx_cluster.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /<>/src/gromacs/gmxana/gmx_clustsize.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /<>/src/gromacs/gmxana/gmx_confrms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /<>/src/gromacs/gmxana/gmx_covar.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /<>/src/gromacs/gmxana/gmx_current.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /<>/src/gromacs/gmxana/gmx_density.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /<>/src/gromacs/gmxana/gmx_densmap.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /<>/src/gromacs/gmxana/gmx_densorder.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /<>/src/gromacs/gmxana/gmx_dielectric.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /<>/src/gromacs/gmxana/gmx_dipoles.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /<>/src/gromacs/gmxana/gmx_disre.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /<>/src/gromacs/gmxana/gmx_do_dssp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /<>/src/gromacs/gmxana/gmx_dos.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /<>/src/gromacs/gmxana/gmx_dyecoupl.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /<>/src/gromacs/gmxana/gmx_dyndom.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /<>/src/gromacs/gmxana/gmx_editconf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /<>/src/gromacs/gmxana/gmx_eneconv.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /<>/src/gromacs/gmxana/gmx_enemat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /<>/src/gromacs/gmxana/gmx_energy.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /<>/src/gromacs/gmxana/gmx_filter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /<>/src/gromacs/gmxana/gmx_genion.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /<>/src/gromacs/gmxana/gmx_genpr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /<>/src/gromacs/gmxana/gmx_hbond.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /<>/src/gromacs/gmxana/gmx_helix.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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-I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /<>/src/gromacs/gmxana/gmx_make_edi.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /<>/src/gromacs/gmxana/gmx_make_ndx.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /<>/src/gromacs/gmxana/gmx_mdmat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /<>/src/gromacs/gmxana/gmx_morph.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /<>/src/gromacs/gmxana/gmx_msd.cpp cd /<>/build/basic-dp/src/gromacs && 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-I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmtraj.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /<>/src/gromacs/gmxana/gmx_order.cpp cd /<>/build/basic-dp/src/gromacs && 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /<>/src/gromacs/gmxana/gmx_principal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /<>/src/gromacs/gmxana/gmx_rama.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /<>/src/gromacs/gmxana/gmx_rms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /<>/src/gromacs/gmxana/gmx_rmsdist.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /<>/src/gromacs/gmxana/gmx_rmsf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /<>/src/gromacs/gmxana/gmx_rotacf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /<>/src/gromacs/gmxana/gmx_rotmat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /<>/src/gromacs/gmxana/gmx_saltbr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /<>/src/gromacs/gmxana/gmx_sans.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /<>/src/gromacs/gmxana/gmx_saxs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /<>/src/gromacs/gmxana/gmx_sham.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /<>/src/gromacs/gmxana/gmx_sigeps.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /<>/src/gromacs/gmxana/gmx_sorient.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /<>/src/gromacs/gmxana/gmx_spatial.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /<>/src/gromacs/gmxana/gmx_spol.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /<>/src/gromacs/gmxana/gmx_tcaf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /<>/src/gromacs/gmxana/gmx_traj.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjcat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjconv.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjorder.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /<>/src/gromacs/gmxana/gmx_tune_pme.cpp /<>/src/gromacs/gmxana/gmx_trjconv.cpp: In function ‘int gmx_trjconv(int, char**)’: /<>/src/gromacs/gmxana/gmx_trjconv.cpp:1699:66: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 put_atoms_in_compact_unitcell(ePBC, ecenter, fr.box, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ positionsArrayRef); ~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_trjconv.cpp:1699:66: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 /<>/src/gromacs/gmxana/gmx_trjconv.cpp:372:50: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 put_atoms_in_compact_unitcell(ePBC, ecenter, box, newComArrayRef); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_trjconv.cpp:372:50: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 /<>/src/gromacs/gmxana/gmx_trjconv.cpp:372:50: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 /<>/src/gromacs/gmxana/gmx_trjconv.cpp:372:50: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 /<>/src/gromacs/gmxana/gmx_trjconv.cpp:315:46: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 put_atoms_in_compact_unitcell(ePBC, ecenter, box, newComArrayRef); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_trjconv.cpp:315:46: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /<>/src/gromacs/gmxana/gmx_vanhove.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /<>/src/gromacs/gmxana/gmx_velacc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /<>/src/gromacs/gmxana/gmx_wham.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /<>/src/gromacs/gmxana/gmx_wheel.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /<>/src/gromacs/gmxana/gmx_xpm2ps.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /<>/src/gromacs/gmxana/hxprops.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /<>/src/gromacs/gmxana/nrama.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /<>/src/gromacs/gmxana/nsfactor.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /<>/src/gromacs/gmxana/pp2shift.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /<>/src/gromacs/gmxana/princ.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /<>/src/gromacs/gmxana/sfactor.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /<>/src/gromacs/gmxpreprocess/add_par.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /<>/src/gromacs/gmxpreprocess/calch.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /<>/src/gromacs/gmxpreprocess/convparm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /<>/src/gromacs/gmxpreprocess/fflibutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_ad.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_vsite.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /<>/src/gromacs/gmxpreprocess/genconf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /<>/src/gromacs/gmxpreprocess/genhydro.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /<>/src/gromacs/gmxpreprocess/gmxcpp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_atomtype.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_nextnb.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /<>/src/gromacs/gmxpreprocess/grompp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /<>/src/gromacs/gmxpreprocess/h_db.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /<>/src/gromacs/gmxpreprocess/hackblock.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /<>/src/gromacs/gmxpreprocess/hizzie.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /<>/src/gromacs/gmxpreprocess/insert-molecules.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /<>/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /<>/src/gromacs/gmxpreprocess/nm2type.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /<>/src/gromacs/gmxpreprocess/pdb2top.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/gmxpreprocess/insert-molecules.cpp:45: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/gmxpreprocess/insert-molecules.cpp:45: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual int gmx::{anonymous}::InsertMolecules::run()’: /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /<>/src/gromacs/gmxpreprocess/pgutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o -c /<>/src/gromacs/gmxpreprocess/read-conformation.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /<>/src/gromacs/gmxpreprocess/readir.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /<>/src/gromacs/gmxpreprocess/readpull.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/gmxpreprocess/read-conformation.h:38, from /<>/src/gromacs/gmxpreprocess/read-conformation.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/gmxpreprocess/read-conformation.h:38, from /<>/src/gromacs/gmxpreprocess/read-conformation.cpp:37: /usr/include/c++/7/bits/stl_vector.h: In function ‘std::vector makeExclusionDistances(const t_atoms*, gmx_atomprop_t, real, real)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /<>/src/gromacs/gmxpreprocess/readrot.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /<>/src/gromacs/gmxpreprocess/resall.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /<>/src/gromacs/gmxpreprocess/solvate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /<>/src/gromacs/gmxpreprocess/specbond.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /<>/src/gromacs/gmxpreprocess/ter_db.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /<>/src/gromacs/gmxpreprocess/tomorse.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/gmxpreprocess/solvate.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /<>/src/gromacs/gmxpreprocess/topdirs.cpp In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/gmxpreprocess/solvate.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In function ‘int gmx_solvate(int, char**)’: /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /<>/src/gromacs/gmxpreprocess/topio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /<>/src/gromacs/gmxpreprocess/toppush.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /<>/src/gromacs/gmxpreprocess/topshake.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /<>/src/gromacs/gmxpreprocess/toputil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /<>/src/gromacs/gmxpreprocess/vsite_parm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /<>/src/gromacs/gmxpreprocess/x2top.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /<>/src/gromacs/gmxpreprocess/xlate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /<>/src/gromacs/correlationfunctions/autocorr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /<>/src/gromacs/correlationfunctions/crosscorr.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/correlationfunctions/manyautocorrelation.h:47, from /<>/src/gromacs/correlationfunctions/autocorr.cpp:57: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/correlationfunctions/manyautocorrelation.h:47, from /<>/src/gromacs/correlationfunctions/autocorr.cpp:57: /usr/include/c++/7/bits/stl_vector.h: In function ‘void low_do_four_core(int, real*, real*, int)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /<>/src/gromacs/correlationfunctions/expfit.cpp /usr/include/c++/7/bits/stl_vector.h: In function ‘void low_do_autocorr(const char*, const gmx_output_env_t*, const char*, int, int, int, real**, real, long unsigned int, int, gmx_bool, gmx_bool, gmx_bool, real, real, int)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /<>/src/gromacs/correlationfunctions/gmx_lmcurve.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /<>/src/gromacs/correlationfunctions/integrate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /<>/src/gromacs/correlationfunctions/manyautocorrelation.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /<>/src/gromacs/correlationfunctions/polynomials.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /<>/src/gromacs/statistics/statistics.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /<>/src/gromacs/analysisdata/abstractdata.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /<>/src/gromacs/analysisdata/analysisdata.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/correlationfunctions/manyautocorrelation.h:47, from /<>/src/gromacs/correlationfunctions/manyautocorrelation.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/correlationfunctions/manyautocorrelation.h:47, from /<>/src/gromacs/correlationfunctions/manyautocorrelation.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In function ‘_Z16many_auto_correlPSt6vectorIS_IdSaIdEESaIS1_EE._omp_fn.0’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /<>/src/gromacs/analysisdata/arraydata.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /<>/src/gromacs/analysisdata/dataframe.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /<>/src/gromacs/analysisdata/datamodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /<>/src/gromacs/analysisdata/datamodulemanager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /<>/src/gromacs/analysisdata/dataproxy.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /<>/src/gromacs/analysisdata/datastorage.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/analysisdata/arraydata.h:46, from /<>/src/gromacs/analysisdata/arraydata.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::AbstractAnalysisArrayData::AbstractAnalysisArrayData()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /<>/src/gromacs/analysisdata/modules/average.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /<>/src/gromacs/analysisdata/modules/displacement.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /<>/src/gromacs/analysisdata/modules/frameaverager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /<>/src/gromacs/analysisdata/modules/histogram.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /<>/src/gromacs/analysisdata/modules/lifetime.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/analysisdata/dataframe.h:46, from /<>/src/gromacs/analysisdata/modules/displacement.cpp:46: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = gmx::AnalysisDataValue; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/analysisdata/datastorage.h:46, from /<>/src/gromacs/analysisdata/datastorage.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gmx::AnalysisDataValue&}; _Tp = gmx::AnalysisDataValue; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&}; _Tp = gmx::AnalysisDataValue; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /<>/src/gromacs/analysisdata/datastorage.cpp: In member function ‘void gmx::internal::AnalysisDataStorageFrameData::addPointSet(int, int, gmx::ArrayRef)’: /<>/src/gromacs/analysisdata/datastorage.cpp:609:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 AnalysisDataStorageFrameData::addPointSet(int dataSetIndex, int firstColumn, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/analysisdata/datastorage.h:46, from /<>/src/gromacs/analysisdata/datastorage.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/analysisdata/datastorage.cpp: In member function ‘void gmx::AnalysisDataStorageFrame::finishPointSet()’: /<>/src/gromacs/analysisdata/datastorage.cpp:749:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 data_->addPointSet(currentDataSet_, firstColumn, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makeConstArrayRef(values_). ~~~~~~~~~~~~~~~~~~~~~~~~~~~ subArray(begin, end-begin)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/analysisdata/datastorage.cpp:749:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /<>/src/gromacs/analysisdata/modules/plot.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /<>/src/gromacs/selection/centerofmass.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /<>/src/gromacs/selection/compiler.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /<>/src/gromacs/selection/evaluate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /<>/src/gromacs/selection/indexutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /<>/src/gromacs/selection/mempool.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /<>/src/gromacs/selection/nbsearch.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /<>/src/gromacs/selection/params.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parser.cpp.o -c /<>/src/gromacs/selection/parser.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /<>/src/gromacs/selection/parsetree.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /<>/src/gromacs/selection/poscalc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /<>/src/gromacs/selection/position.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -Wno-unused-parameter -Wno-unused-function -o CMakeFiles/libgromacs.dir/selection/scanner.cpp.o -c /<>/src/gromacs/selection/scanner.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /<>/src/gromacs/selection/scanner_internal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /<>/src/gromacs/selection/selection.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /<>/src/gromacs/selection/selectioncollection.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /<>/src/gromacs/selection/selectionoption.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /<>/src/gromacs/selection/selectionoptionbehavior.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/selection/selection.h:47, from /<>/src/gromacs/selection/selection.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/selection/selection.h:47, from /<>/src/gromacs/selection/selection.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void gmx::internal::SelectionData::initializeMassesAndCharges(const gmx_mtop_t*)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /<>/src/gromacs/selection/selectionoptionmanager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /<>/src/gromacs/selection/selelem.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /<>/src/gromacs/selection/selhelp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /<>/src/gromacs/selection/selmethod.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /<>/src/gromacs/selection/selvalue.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /<>/src/gromacs/selection/sm_compare.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /<>/src/gromacs/selection/sm_distance.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /<>/src/gromacs/selection/sm_insolidangle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /<>/src/gromacs/selection/sm_keywords.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /<>/src/gromacs/selection/sm_merge.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /<>/src/gromacs/selection/sm_permute.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /<>/src/gromacs/selection/sm_position.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /<>/src/gromacs/selection/sm_same.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /<>/src/gromacs/selection/sm_simple.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /<>/src/gromacs/selection/symrec.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /<>/src/gromacs/trajectoryanalysis/analysismodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /<>/src/gromacs/trajectoryanalysis/analysissettings.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /<>/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /<>/src/gromacs/trajectoryanalysis/runnercommon.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/angle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/distance.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/pairdist.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /<>/src/gromacs/trajectoryanalysis/modules/freevolume.h:45, from /<>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /<>/src/gromacs/trajectoryanalysis/modules/freevolume.h:45, from /<>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::analysismodules::{anonymous}::FreeVolume::initAnalysis(const gmx::TrajectoryAnalysisSettings&, const gmx::TopologyInformation&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/trajectoryanalysis/analysismodule.h:49, from /<>/src/gromacs/trajectoryanalysis/modules/freevolume.h:45, from /<>/src/gromacs/trajectoryanalysis/modules/freevolume.cpp:44: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/rdf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/sasa.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/select.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/trajectory.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /<>/src/gromacs/tools/check.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /<>/src/gromacs/tools/convert_tpr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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-I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<>/src/gromacs/gmxlib/network.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c 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-I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src 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/<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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/<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops 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/usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<>/src/gromacs/mdlib/broadcaststructs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/calc_verletbuf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp /<>/src/gromacs/mdlib/calcmu.cpp: In function ‘void calc_mu(int, int, gmx::ArrayRef >, real*, real*, int, double*, double*)’: /<>/src/gromacs/mdlib/calcmu.cpp:50:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void calc_mu(int start, int homenr, gmx::ArrayRef x, real q[], real qB[], ^~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<>/src/gromacs/mdlib/compute_io.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<>/src/gromacs/mdlib/constr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<>/src/gromacs/mdlib/force.cpp /<>/src/gromacs/mdlib/force.cpp: In function ‘void sum_dhdl(gmx_enerdata_t*, gmx::ArrayRef, t_lambda*)’: /<>/src/gromacs/mdlib/force.cpp:724:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void sum_dhdl(gmx_enerdata_t *enerd, gmx::ArrayRef lambda, t_lambda *fepvals) ^~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<>/src/gromacs/mdlib/forcerec.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<>/src/gromacs/mdlib/genborn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp /<>/src/gromacs/mdlib/mdoutf.cpp: In function ‘void mdoutf_write_to_trajectory_files(FILE*, t_commrec*, gmx_mdoutf_t, int, gmx_mtop_t*, gmx_int64_t, double, t_state*, t_state*, ObservablesHistory*, gmx::ArrayRef >)’: /<>/src/gromacs/mdlib/mdoutf.cpp:247:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void mdoutf_write_to_trajectory_files(FILE *fplog, t_commrec *cr, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdoutf.cpp:269:31: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(cr->dd, state_local, state_local->x, globalXRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdoutf.cpp:274:31: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(cr->dd, state_local, state_local->v, globalVRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdoutf.cpp:280:27: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(cr->dd, state_local, f_local, gmx::arrayRefFromArray(reinterpret_cast(f_global), f_local.size())); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_grid.cpp /<>/src/gromacs/mdlib/minimize.cpp: In function ‘void write_em_traj(FILE*, t_commrec*, gmx_mdoutf_t, gmx_bool, gmx_bool, const char*, gmx_mtop_t*, t_inputrec*, gmx_int64_t, em_state_t*, t_state*, ObservablesHistory*)’: /<>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, step, (double)step, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &state->s, state_global, observablesHistory, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->f); ~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp: In function ‘void evaluate_energy(FILE*, t_commrec*, gmx_mtop_t*, em_state_t*, gmx_localtop_t*, t_inputrec*, t_nrnb*, gmx_wallcycle_t, gmx_global_stat_t, gmx_vsite_t*, gmx_constr_t, t_fcdata*, t_graph*, gmx::MDAtoms*, t_forcerec*, real*, gmx_enerdata_t*, real (*)[3], real (*)[3], gmx_int64_t, gmx_bool)’: /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ count, nrnb, wcycle, top, &top_global->groups, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->s.box, ems->s.x, &ems->s.hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->f, force_vir, mdAtoms->mdatoms(), enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->s.lambda, graph, fr, vsite, mu_tot, t, nullptr, TRUE, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bNS ? GMX_FORCE_NS : 0), ~~~~~~~~~~~~~~~~~~~~~~~~~ DOMAINDECOMP(cr) ? ~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::yes : ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::no, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DOMAINDECOMP(cr) ? ~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::yes : ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::no); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp:848:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp: In function ‘void evaluate_energy(FILE*, t_commrec*, gmx_mtop_t*, em_state_t*, gmx_localtop_t*, t_inputrec*, t_nrnb*, gmx_wallcycle_t, gmx_global_stat_t, gmx_vsite_t*, gmx_constr_t, t_fcdata*, t_graph*, gmx::MDAtoms*, t_forcerec*, real*, gmx_enerdata_t*, real (*)[3], real (*)[3], gmx_int64_t, gmx_bool)’: /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ count, nrnb, wcycle, top, &top_global->groups, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->s.box, ems->s.x, &ems->s.hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->f, force_vir, mdAtoms->mdatoms(), enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->s.lambda, graph, fr, vsite, mu_tot, t, nullptr, TRUE, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bNS ? GMX_FORCE_NS : 0), ~~~~~~~~~~~~~~~~~~~~~~~~~ DOMAINDECOMP(cr) ? ~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::yes : ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::no, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DOMAINDECOMP(cr) ? ~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::yes : ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::no); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp:848:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp: In function ‘void init_em(FILE*, const char*, t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const MdrunOptions&, t_state*, gmx_mtop_t*, em_state_t*, gmx_localtop_t**, t_nrnb*, real*, t_forcerec*, gmx_enerdata_t**, t_graph**, gmx::MDAtoms*, gmx_global_stat**, gmx_vsite_t*, gmx_constr_t, gmx_shellfc_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)’: /<>/src/gromacs/mdlib/minimize.cpp:350:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 initialize_lambdas(fplog, ir, &(state_global->fep_state), state_global->lambda, nullptr); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp:350:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp: In function ‘double gmx::do_lbfgs(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/gromacs/mdlib/minimize.cpp:1883:41: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, step, (real)step, &ems.s, state_global, observablesHistory, ems.f); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_search.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_tuning.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<>/src/gromacs/mdlib/ns.cpp /<>/src/gromacs/mdlib/minimize.cpp: In function ‘double gmx::do_cg(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, step, (double)step, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &state->s, state_global, observablesHistory, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->f); ~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp: In function ‘double gmx::do_steep(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, step, (double)step, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &state->s, state_global, observablesHistory, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->f); ~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<>/src/gromacs/mdlib/perf_est.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<>/src/gromacs/mdlib/qm_gamess.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<>/src/gromacs/mdlib/qm_gaussian.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<>/src/gromacs/mdlib/qm_mopac.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<>/src/gromacs/mdlib/qmmm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<>/src/gromacs/mdlib/rbin.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /<>/src/gromacs/mdlib/rf_util.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<>/src/gromacs/mdlib/shakef.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<>/src/gromacs/mdlib/shellfc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<>/src/gromacs/mdlib/sighandler.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<>/src/gromacs/mdlib/sim_util.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/simulationsignal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<>/src/gromacs/mdlib/splitter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<>/src/gromacs/mdlib/stat.cpp /<>/src/gromacs/mdlib/shellfc.cpp: In function ‘void relax_shell_flexcon(FILE*, t_commrec*, gmx_bool, gmx_int64_t, t_inputrec*, gmx_bool, int, gmx_localtop_t*, gmx_constr_t, gmx_enerdata_t*, t_fcdata*, t_state*, gmx::PaddedRVecVector*, real (*)[3], t_mdatoms*, t_nrnb*, gmx_wallcycle_t, t_graph*, gmx_groups_t*, gmx_shellfc_t*, t_forcerec*, gmx_bool, double, real*, gmx_vsite_t*, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)’: /<>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, mdstep, nrnb, wcycle, top, groups, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->box, state->x, &state->hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ force[Min], force_vir, md, enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->lambda, graph, ~~~~~~~~~~~~~~~~~~~~~ fr, vsite, mu_tot, t, nullptr, bBornRadii, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bDoNS ? GMX_FORCE_NS : 0) | force_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddOpenBalanceRegion, ddCloseBalanceRegion); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, 1, nrnb, wcycle, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top, groups, state->box, pos[Try], &state->hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ force[Try], force_vir, ~~~~~~~~~~~~~~~~~~~~~~ md, enerd, fcd, state->lambda, graph, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fr, vsite, mu_tot, t, nullptr, bBornRadii, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ force_flags, ~~~~~~~~~~~~ ddOpenBalanceRegion, ddCloseBalanceRegion); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void put_atoms_in_box_omp(int, const real (*)[3], gmx::ArrayRef >)’: /<>/src/gromacs/mdlib/sim_util.cpp:2684:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void put_atoms_in_box_omp(int ePBC, const matrix box, gmx::ArrayRef x) ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void do_force_cutsVERLET(FILE*, t_commrec*, t_inputrec*, gmx_int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, gmx_groups_t*, real (*)[3], gmx::PaddedArrayRef >, history_t*, gmx::PaddedArrayRef >, real (*)[3], t_mdatoms*, gmx_enerdata_t*, t_fcdata*, real*, t_graph*, t_forcerec*, interaction_const_t*, gmx_vsite_t*, real*, double, gmx_edsam_t, gmx_bool, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)’: /<>/src/gromacs/mdlib/sim_util.cpp:1042:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 static void do_force_cutsVERLET(FILE *fplog, t_commrec *cr, ^~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:1042:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<>/src/gromacs/mdlib/tgroup.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void do_force(FILE*, t_commrec*, t_inputrec*, gmx_int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, gmx_groups_t*, real (*)[3], gmx::PaddedArrayRef >, history_t*, gmx::PaddedArrayRef >, real (*)[3], t_mdatoms*, gmx_enerdata_t*, t_fcdata*, gmx::ArrayRef, t_graph*, t_forcerec*, gmx_vsite_t*, real*, double, gmx_edsam_t, gmx_bool, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)’: /<>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 void do_force(FILE *fplog, t_commrec *cr, ^~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp:2120:32: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force_cutsVERLET(fplog, cr, inputrec, ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ step, nrnb, wcycle, ~~~~~~~~~~~~~~~~~~~ top, ~~~~ groups, ~~~~~~~ box, x, hist, ~~~~~~~~~~~~~ force, vir_force, ~~~~~~~~~~~~~~~~~ mdatoms, ~~~~~~~~ enerd, fcd, ~~~~~~~~~~~ lambda.data(), graph, ~~~~~~~~~~~~~~~~~~~~~ fr, fr->ic, ~~~~~~~~~~~ vsite, mu_tot, ~~~~~~~~~~~~~~ t, ed, ~~~~~~ bBornRadii, ~~~~~~~~~~~ flags, ~~~~~~ ddOpenBalanceRegion, ~~~~~~~~~~~~~~~~~~~~ ddCloseBalanceRegion); ~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2120:32: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void initialize_lambdas(FILE*, t_inputrec*, int*, gmx::ArrayRef, double*)’: /<>/src/gromacs/mdlib/sim_util.cpp:2834:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 extern void initialize_lambdas(FILE *fplog, t_inputrec *ir, int *fep_state, gmx::ArrayRef lambda, double *lam0) ^~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2834:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void init_md(FILE*, t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, double*, double*, t_state*, double*, t_nrnb*, gmx_mtop_t*, gmx_update_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, real (*)[3], real (*)[3], real*, gmx_bool*, t_vcm**, gmx_wallcycle_t)’: /<>/src/gromacs/mdlib/sim_util.cpp:2931:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2931:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp:2937:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2937:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<>/src/gromacs/mdlib/tpi.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<>/src/gromacs/mdlib/trajectory_writing.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp /<>/src/gromacs/mdlib/trajectory_writing.cpp: In function ‘void do_md_trajectory_writing(FILE*, t_commrec*, int, const t_filenm*, gmx_int64_t, gmx_int64_t, double, t_inputrec*, t_state*, t_state*, ObservablesHistory*, gmx_mtop_t*, t_forcerec*, gmx_mdoutf_t, t_mdebin*, gmx_ekindata_t*, gmx::ArrayRef >, int*, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool)’: /<>/src/gromacs/mdlib/trajectory_writing.cpp:55:1: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 do_md_trajectory_writing(FILE *fplog, ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/trajectory_writing.cpp:148:41: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, top_global, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ step, t, state, state_global, observablesHistory, f); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/trajectory_writing.cpp:148:41: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp /<>/src/gromacs/mdlib/tpi.cpp: In function ‘double gmx::do_tpi(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/gromacs/mdlib/tpi.cpp:663:21: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ step, nrnb, wcycle, top, &top_global->groups, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state_global->box, state_global->x, &state_global->hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f, force_vir, mdatoms, enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state_global->lambda, ~~~~~~~~~~~~~~~~~~~~~ nullptr, fr, nullptr, mu_tot, t, nullptr, FALSE, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_NONBONDED | GMX_FORCE_ENERGY | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bNS ? GMX_FORCE_DYNAMICBOX | GMX_FORCE_NS : 0) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bStateChanged ? GMX_FORCE_STATECHANGED : 0), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::no, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::no); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/tpi.cpp:663:21: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/tpi.cpp:663:21: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/update.cpp: In function ‘void update_constraints(FILE*, gmx_int64_t, real*, t_inputrec*, t_mdatoms*, t_state*, gmx_bool, t_graph*, gmx::PaddedArrayRef >, t_idef*, real (*)[3], t_commrec*, t_nrnb*, gmx_wallcycle_t, gmx_update_t*, gmx_constr_t, gmx_bool, gmx_bool)’: /<>/src/gromacs/mdlib/update.cpp:1555:6: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 void update_constraints(FILE *fplog, ^~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/update.cpp: In function ‘void update_coords(FILE*, gmx_int64_t, t_inputrec*, t_mdatoms*, t_state*, gmx::PaddedArrayRef >, t_fcdata*, gmx_ekindata_t*, real (*)[3], gmx_update_t*, int, t_commrec*, gmx_constr_t)’: /<>/src/gromacs/mdlib/update.cpp:1889:6: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 void update_coords(FILE *fplog, ^~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<>/src/gromacs/mdlib/vsite.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<>/src/gromacs/mdlib/wall.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<>/src/gromacs/mdlib/wnblist.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/electricfield.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<>/src/gromacs/fft/calcgrid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<>/src/gromacs/fft/fft.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<>/src/gromacs/fft/fft5d.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<>/src/gromacs/fft/parallel_3dfft.cpp /<>/src/gromacs/mdlib/vsite.cpp: In function ‘void constructVsitesGlobal(const gmx_mtop_t&, gmx::ArrayRef >)’: /<>/src/gromacs/mdlib/vsite.cpp:765:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void constructVsitesGlobal(const gmx_mtop_t &mtop, ^~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<>/src/gromacs/fft/fft_fftw3.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/mdlib/vsite.h:43, from /<>/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/hostallocator.cpp In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/mdlib/vsite.h:43, from /<>/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/7/bits/stl_vector.h: In function ‘_Z25split_vsites_over_threadsPK7t_ilistPK9t_iparamsPK9t_mdatomsP11gmx_vsite_t._omp_fn.3’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<>/src/gromacs/gpu_utils/gpu_utils.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /<>/src/gromacs/hardware/cpuinfo.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /<>/src/gromacs/hardware/detecthardware.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<>/src/gromacs/hardware/gpu_hw_info.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/hardwaretopology.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /<>/src/gromacs/hardware/printhardware.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /<>/src/gromacs/hardware/identifyavx512fmaunits.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /<>/src/gromacs/mdrunutility/handlerestart.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<>/src/gromacs/mdrunutility/mdmodules.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/threadaffinity.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /<>/src/gromacs/options/abstractoption.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /<>/src/gromacs/options/abstractsection.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /<>/src/gromacs/options/basicoptions.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<>/src/gromacs/options/behaviorcollection.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /<>/src/gromacs/options/filenameoption.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/filenameoptionmanager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<>/src/gromacs/options/options.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<>/src/gromacs/options/optionsassigner.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<>/src/gromacs/options/optionsection.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /<>/src/gromacs/options/optionsvisitor.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /<>/src/gromacs/options/timeunitmanager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<>/src/gromacs/options/treesupport.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /<>/src/gromacs/taskassignment/decidegpuusage.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /<>/src/gromacs/taskassignment/findallgputasks.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/options/basicoptions.h:50, from /<>/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/options/basicoptions.h:50, from /<>/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<>/src/gromacs/taskassignment/reportgpuusage.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<>/src/gromacs/taskassignment/resourcedivision.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<>/src/gromacs/taskassignment/taskassignment.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/usergpuids.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /<>/src/gromacs/trajectory/trajectoryframe.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -c /<>/src/external/thread_mpi/src/errhandler.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /<>/src/external/thread_mpi/src/tmpi_malloc.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<>/src/external/thread_mpi/src/atomic.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /<>/src/external/thread_mpi/src/lock.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o -c /<>/src/external/thread_mpi/src/pthreads.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o -c /<>/src/external/thread_mpi/src/system_error.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/alltoall.c.o -c /<>/src/external/thread_mpi/src/alltoall.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_protocol.c.o -c /<>/src/external/thread_mpi/src/p2p_protocol.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o -c /<>/src/external/thread_mpi/src/barrier.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o -c /<>/src/external/thread_mpi/src/p2p_send_recv.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o -c /<>/src/external/thread_mpi/src/bcast.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_wait.c.o -c /<>/src/external/thread_mpi/src/p2p_wait.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/collective.c.o -c /<>/src/external/thread_mpi/src/collective.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o -c /<>/src/external/thread_mpi/src/profile.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o -c /<>/src/external/thread_mpi/src/comm.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o -c /<>/src/external/thread_mpi/src/reduce.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o -c /<>/src/external/thread_mpi/src/event.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o -c /<>/src/external/thread_mpi/src/reduce_fast.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o -c /<>/src/external/thread_mpi/src/gather.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o -c /<>/src/external/thread_mpi/src/scatter.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o -c /<>/src/external/thread_mpi/src/group.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o -c /<>/src/external/thread_mpi/src/tmpi_init.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o -c /<>/src/external/thread_mpi/src/topology.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o -c /<>/src/external/thread_mpi/src/list.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o -c /<>/src/external/thread_mpi/src/type.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o -c /<>/src/external/thread_mpi/src/scan.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o -c /<>/src/external/thread_mpi/src/numa_malloc.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o -c /<>/src/external/thread_mpi/src/once.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o -c /<>/src/external/lmfit/lmmin.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -c /<>/build/basic-dp/src/gromacs/utility/baseversion-gen.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libgromacs_d.so.3 -o ../../lib/libgromacs_d.so.3.2.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib/arm-linux-gnueabihf/libhwloc.so -ldl -lrt /usr/lib/arm-linux-gnueabihf/libfftw3.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so -lpthread -fopenmp -lm /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lpthread -lm cd /<>/build/basic-dp/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.3.2.0 ../../lib/libgromacs_d.so.3 ../../lib/libgromacs_d.so make[3]: Leaving directory '/<>/build/basic-dp' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/template /<>/build/basic-dp /<>/build/basic-dp/share/template /<>/build/basic-dp/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Scanning dependencies of target gmx make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /<>/src/programs/gmx.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /<>/src/programs/legacymodules.cpp Scanning dependencies of target template make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/share/template && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /<>/share/template/template.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o 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../../bin/gmx_d ../../lib/libgromacs_d.so.3.2.0 -fopenmp /usr/lib/arm-linux-gnueabihf/libX11.so -lm make[3]: Leaving directory '/<>/build/basic-dp' [100%] Built target gmx cd /<>/build/basic-dp/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs_d.so.3.2.0 -fopenmp -lm make[3]: Leaving directory '/<>/build/basic-dp' [100%] Built target template make[2]: Leaving directory '/<>/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles 0 make[1]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -j4 -C build/basic tests make[1]: Entering directory '/<>/build/basic' /usr/bin/cmake -H/<> -B/<>/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests make[2]: Entering directory '/<>/build/basic' /usr/bin/cmake -H/<> -B/<>/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles 96 /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/external/gmock-1.7.0 /<>/build/basic /<>/build/basic/src/external/gmock-1.7.0 /<>/build/basic/src/external/gmock-1.7.0/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/<>/build/basic' make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/basic' make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/<>/build/basic' Scanning dependencies of target gmock make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build [ 0%] Built target mdrun_test_objlib /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/external/gmock-1.7.0 && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc [ 1%] Built target tng_io_obj make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/basic /<>/build/basic/src/gromacs/onlinehelp/tests /<>/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic /<>/build/basic/src/gromacs/mdrunutility/tests /<>/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= [ 1%] Built target mdrun_objlib cd /<>/build/basic/src/external/gmock-1.7.0 && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[4]: Leaving directory '/<>/build/basic' [ 1%] Built target onlinehelp-test-shared /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/analysisdata/tests /<>/build/basic /<>/build/basic/src/gromacs/analysisdata/tests /<>/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target analysisdata-test-shared make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /<>/src/gromacs/analysisdata/tests/datatest.cpp make[4]: Leaving directory '/<>/build/basic' [ 1%] Built target mdrunutility-test-shared /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/basic' [ 78%] Built target libgromacs cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /<>/src/gromacs/analysisdata/tests/mock_datamodule.cpp cd /<>/build/basic/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/basic/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/basic' [ 78%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/basic /<>/build/basic/src/testutils /<>/build/basic/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp make[4]: Leaving directory '/<>/build/basic' [ 78%] Built target analysisdata-test-shared cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/basic/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/basic/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/basic' [ 80%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/basic /<>/build/basic/src/testutils/tests /<>/build/basic/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/basic /<>/build/basic/src/testutils/tests /<>/build/basic/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/basic /<>/build/basic/src/gromacs/mdlib/tests /<>/build/basic/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-mpi-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build Scanning dependencies of target mdlib-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build Scanning dependencies of target testutils-mpi-test make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /<>/src/programs/mdrun/tests/multisim.cpp make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp Scanning dependencies of target testutils-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.3.2.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 80%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/basic /<>/build/basic/src/gromacs/applied-forces/tests /<>/build/basic/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /<>/src/programs/mdrun/tests/multisimtest.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /<>/src/programs/mdrun/tests/replicaexchange.cpp cd /<>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /<>/src/programs/mdrun/tests/domain_decomposition.cpp make[4]: Leaving directory '/<>/build/basic' [ 81%] Built target applied-forces-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/basic /<>/build/basic/src/gromacs/listed-forces/tests /<>/build/basic/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp make[4]: Leaving directory '/<>/build/basic' [ 81%] Built target mdrun-mpi-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/basic /<>/build/basic/src/gromacs/commandline/tests /<>/build/basic/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /<>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 81%] Built target listed-forces-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/basic /<>/build/basic/src/gromacs/ewald/tests /<>/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.3.2.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 82%] Built target testutils-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/basic /<>/build/basic/src/gromacs/fft/tests /<>/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/basic' [ 83%] Built target mdlib-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/basic /<>/build/basic/src/gromacs/gpu_utils/tests /<>/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp make[4]: Leaving directory '/<>/build/basic' [ 84%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/basic /<>/build/basic/src/gromacs/hardware/tests /<>/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /<>/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 84%] Built target hardware-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/basic /<>/build/basic/src/gromacs/math/tests /<>/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp make[4]: Leaving directory '/<>/build/basic' [ 85%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic /<>/build/basic/src/gromacs/mdrunutility/tests /<>/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 85%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic /<>/build/basic/src/gromacs/mdrunutility/tests /<>/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp make[4]: Leaving directory '/<>/build/basic' [ 85%] Built target math-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/basic /<>/build/basic/src/gromacs/onlinehelp/tests /<>/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 86%] Built target mdrunutility-mpi-test cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/basic /<>/build/basic/src/gromacs/options/tests /<>/build/basic/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 87%] Built target commandline-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/basic /<>/build/basic/src/gromacs/random/tests /<>/build/basic/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 87%] Built target ewald-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/basic /<>/build/basic/src/gromacs/tables/tests /<>/build/basic/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp make[4]: Leaving directory '/<>/build/basic' [ 88%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/basic /<>/build/basic/src/gromacs/taskassignment/tests /<>/build/basic/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, ^~~~~~~~~~~~ cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, ^~~~~~~~~~~~ cd /<>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp make[4]: Leaving directory '/<>/build/basic' [ 88%] Built target taskassignment-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/basic /<>/build/basic/src/gromacs/utility/tests /<>/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp cd /<>/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp cd /<>/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 89%] Built target table-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/basic /<>/build/basic/src/gromacs/fileio/tests /<>/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/random/tabulatednormaldistribution.h:52, from /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 89%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/basic /<>/build/basic/src/gromacs/pulling/tests /<>/build/basic/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp In file included from /usr/include/c++/7/vector:64:0, from /usr/include/c++/7/bits/random.h:34, from /usr/include/c++/7/random:49, from /<>/src/gromacs/random/seed.h:51, from /<>/src/gromacs/random/threefry.h:51, from /<>/src/gromacs/random/tests/threefry.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_vector.h:383:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 vector(initializer_list __l, ^~~~~~ cd /<>/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp /<>/src/gromacs/random/tests/threefry.cpp: In function ‘(static initializers for /<>/src/gromacs/random/tests/threefry.cpp)’: /<>/src/gromacs/random/tests/threefry.cpp:119:44: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ /<>/src/gromacs/random/tests/threefry.cpp:131:43: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ /<>/src/gromacs/random/tests/threefry.cpp:142:42: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp cd /<>/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 89%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/basic /<>/build/basic/src/gromacs/awh/tests /<>/build/basic/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘testing::Test* testing::internal::ParameterizedTestFactory::CreateTest() [with TestClass = gmx::test::BiasTest_ForcesBiasPmf_Test]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::test::BiasTest_DetectsCovering_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 90%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/basic /<>/build/basic/src/gromacs/simd/tests /<>/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/biasstate.h:57, from /<>/src/gromacs/awh/tests/biasstate.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::test::BiasStateTest::BiasStateTest()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/dimparams.h:52, from /<>/src/gromacs/awh/grid.h:60, from /<>/src/gromacs/awh/tests/grid.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::test::gridTest_neighborhood_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 90%] Built target awh-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gmxana/tests /<>/build/basic /<>/build/basic/src/gromacs/gmxana/tests /<>/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxana-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /<>/src/gromacs/gmxana/tests/gmx_traj.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /<>/src/gromacs/gmxana/tests/gmx_trjconv.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 90%] Built target gmxana-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gmxpreprocess/tests /<>/build/basic /<>/build/basic/src/gromacs/gmxpreprocess/tests /<>/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxpreprocess-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/genconf.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp make[4]: Leaving directory '/<>/build/basic' [ 91%] Built target options-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/correlationfunctions/tests /<>/build/basic /<>/build/basic/src/gromacs/correlationfunctions/tests /<>/build/basic/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Scanning dependencies of target correlations-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/autocorr.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/readir.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/solvate.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/correlationdataset.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/expfit.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 91%] Built target gmxpreprocess-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/analysisdata/tests /<>/build/basic /<>/build/basic/src/gromacs/analysisdata/tests /<>/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /<>/src/gromacs/analysisdata/tests/analysisdata.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp make[4]: Leaving directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp [ 92%] Built target correlations-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/selection/tests /<>/build/basic /<>/build/basic/src/gromacs/selection/tests /<>/build/basic/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= Scanning dependencies of target selection-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /<>/src/gromacs/selection/tests/indexutil.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /<>/src/gromacs/selection/tests/nbsearch.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 93%] Built target simd-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/trajectoryanalysis/tests /<>/build/basic /<>/build/basic/src/gromacs/trajectoryanalysis/tests /<>/build/basic/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/moduletest.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/clustsize.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /<>/src/gromacs/analysisdata/tests/arraydata.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /<>/src/gromacs/selection/tests/poscalc.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /<>/src/gromacs/analysisdata/tests/average.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /<>/src/gromacs/selection/tests/selectioncollection.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /<>/src/gromacs/analysisdata/tests/histogram.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/angle.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/freevolume.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /<>/src/gromacs/analysisdata/tests/lifetime.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/pairdist.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/rdf.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /<>/src/gromacs/selection/tests/selectionoption.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/sasa.cpp make[4]: Leaving directory '/<>/build/basic' [ 93%] Built target analysisdata-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/energyanalysis/tests /<>/build/basic /<>/build/basic/src/gromacs/energyanalysis/tests /<>/build/basic/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target energyanalysis-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /<>/src/gromacs/energyanalysis/tests/legacyenergy.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/select.cpp cd /<>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp cd /<>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 93%] Built target energyanalysis-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/basic /<>/build/basic/src/gromacs/compat/tests /<>/build/basic/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp cd /<>/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 93%] Built target compat-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /<>/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/trajectory.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /<>/src/programs/mdrun/tests/grompp.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/unionfind.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /<>/src/programs/mdrun/tests/initialconstraints.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /<>/src/gromacs/selection/tests/toputils.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 94%] Built target selection-test cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/rerun.cpp.o -c /<>/src/programs/mdrun/tests/rerun.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 96%] Built target utility-test cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /<>/src/programs/mdrun/tests/trajectory_writing.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o -c /<>/src/programs/mdrun/tests/trajectoryreader.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /<>/src/programs/mdrun/tests/compressed_x_output.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 97%] Built target trajectoryanalysis-test cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /<>/src/programs/mdrun/tests/swapcoords.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /<>/src/programs/mdrun/tests/interactiveMD.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /<>/src/programs/mdrun/tests/termination.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /<>/src/programs/mdrun/tests/pmetest.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/rerun.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [100%] Built target mdrun-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/basic /<>/build/basic /<>/build/basic/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/basic' [100%] Built target tests make[3]: Leaving directory '/<>/build/basic' /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles 0 make[2]: Leaving directory '/<>/build/basic' make[1]: Leaving directory '/<>/build/basic' (cd build/basic; LD_LIBRARY_PATH=/<>/build/basic/lib ctest -V) UpdateCTestConfiguration from :/<>/build/basic/DartConfiguration.tcl Parse Config file:/<>/build/basic/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/basic/DartConfiguration.tcl Parse Config file:/<>/build/basic/DartConfiguration.tcl Test project /<>/build/basic Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/basic/bin/testutils-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: [==========] Running 59 tests from 5 test cases. 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) 1: [----------] 34 tests from ReferenceDataTest (14 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues 1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero 1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) 1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance 1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) 1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) 1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 59 tests from 5 test cases ran. (23 ms total) 1: [ PASSED ] 59 tests. 1/33 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /<>/build/basic/bin/testutils-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: [==========] Running 1 test from 1 test case. 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (0 ms) 2: [----------] 1 test from MpiSelfTest (0 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. 2/33 Test #2: TestUtilsMpiUnitTests ............ Passed 0.02 sec test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/basic/bin/mdlib-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: [==========] Running 40 tests from 6 test cases. 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses 3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) 3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) 3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond 3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) 3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks 3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) 3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace 3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) 3: [----------] 7 tests from SignalTest (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 40 tests from 6 test cases ran. (3 ms total) 3: [ PASSED ] 40 tests. 3/33 Test #3: MdlibUnitTest .................... Passed 0.02 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/basic/bin/applied-forces-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: [==========] Running 3 tests from 1 test case. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (0 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (0 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. 4/33 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/basic/bin/listed-forces-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: [==========] Running 15 tests from 1 test case. 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (1 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. 5/33 Test #5: ListedForcesTest ................. Passed 0.02 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/basic/bin/commandline-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: [==========] Running 57 tests from 6 test cases. 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (1 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (1 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues 6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (1 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) 6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) 6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 6: 6: [----------] 23 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs 6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 6: [----------] 23 tests from ParseCommonArgsTest (4 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 57 tests from 6 test cases ran. (12 ms total) 6: [ PASSED ] 57 tests. 6/33 Test #6: CommandLineUnitTests ............. Passed 0.03 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/basic/bin/ewald-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7: [==========] Running 257 tests from 10 test cases. 7: [----------] Global test environment set-up. 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 7: 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (9 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms) 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (87 ms total) 7: 7: [----------] 144 tests from SaneInput/PmeGatherTest 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) 7: [----------] 144 tests from SaneInput/PmeGatherTest (124 ms total) 7: 7: [----------] 16 tests from SaneInput/PmeSolveTest 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (4 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (4 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (3 ms) 7: [----------] 16 tests from SaneInput/PmeSolveTest (40 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (13 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (4 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (4 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (23 ms total) 7: 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (4 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (4 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (37 ms total) 7: 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (31 ms total) 7: 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (4 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (4 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (37 ms total) 7: 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (7 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (10 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (11 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (7 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (7 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (10 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (10 ms) 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (97 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 257 tests from 10 test cases ran. (501 ms total) 7: [ PASSED ] 257 tests. 7/33 Test #7: EwaldUnitTests ................... Passed 0.56 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/basic/bin/fft-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8: [==========] Running 14 tests from 4 test cases. 8: [----------] Global test environment set-up. 8: [----------] 2 tests from ManyFFTTest 8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (8 ms) 8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (13 ms) 8: [----------] 2 tests from ManyFFTTest (22 ms total) 8: 8: [----------] 1 test from FFTTest 8: [ RUN ] FFTTest.Real2DLength18_15Test 8: [ OK ] FFTTest.Real2DLength18_15Test (5 ms) 8: [----------] 1 test from FFTTest (5 ms total) 8: 8: [----------] 1 test from FFFTest3D 8: [ RUN ] FFFTest3D.Real5_6_9 8: [ OK ] FFFTest3D.Real5_6_9 (3 ms) 8: [----------] 1 test from FFFTest3D (3 ms total) 8: 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (7 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (12 ms) 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (30 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 14 tests from 4 test cases ran. (60 ms total) 8: [ PASSED ] 14 tests. 8/33 Test #8: FFTUnitTests ..................... Passed 0.07 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/basic/bin/gpu_utils-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: [==========] Running 30 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (2 ms) 9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/0 (2 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = float 9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (2 ms) 9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/1 (2 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector 9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (2 ms) 9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/2 (2 ms total) 9: 9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/0 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/1 (1 ms total) 9: 9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/2 (0 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 30 tests from 6 test cases ran. (7 ms total) 9: [ PASSED ] 30 tests. 9/33 Test #9: GpuUtilsUnitTests ................ Passed 0.02 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/basic/bin/hardware-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10: [==========] Running 4 tests from 1 test case. 10: [----------] Global test environment set-up. 10: [----------] 4 tests from HardwareTopologyTest 10: [ RUN ] HardwareTopologyTest.Execute 10: [ OK ] HardwareTopologyTest.Execute (7 ms) 10: [ RUN ] HardwareTopologyTest.HwlocExecute 10: [ OK ] HardwareTopologyTest.HwlocExecute (7 ms) 10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (6 ms) 10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency 10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (6 ms) 10: [----------] 4 tests from HardwareTopologyTest (26 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 4 tests from 1 test case ran. (26 ms total) 10: [ PASSED ] 4 tests. 10/33 Test #10: HardwareUnitTests ................ Passed 0.04 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/basic/bin/math-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11: [==========] Running 31 tests from 4 test cases. 11: [----------] Global test environment set-up. 11: [----------] 21 tests from FunctionTest 11: [ RUN ] FunctionTest.StaticLog2 11: [ OK ] FunctionTest.StaticLog2 (0 ms) 11: [ RUN ] FunctionTest.Log2I32Bit 11: [ OK ] FunctionTest.Log2I32Bit (1 ms) 11: [ RUN ] FunctionTest.Log2I64Bit 11: [ OK ] FunctionTest.Log2I64Bit (0 ms) 11: [ RUN ] FunctionTest.GreatestCommonDivisor 11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 11: [ RUN ] FunctionTest.InvsqrtFloat 11: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvsqrtDouble 11: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvsqrtInteger 11: [ OK ] FunctionTest.InvsqrtInteger (1 ms) 11: [ RUN ] FunctionTest.InvcbrtFloat 11: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvcbrtDouble 11: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvcbrtInteger 11: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 11: [ RUN ] FunctionTest.SixthrootFloat 11: [ OK ] FunctionTest.SixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.SixthrootDouble 11: [ OK ] FunctionTest.SixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.SixthrootInteger 11: [ OK ] FunctionTest.SixthrootInteger (1 ms) 11: [ RUN ] FunctionTest.InvsixthrootFloat 11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootDouble 11: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootInteger 11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.Powers 11: [ OK ] FunctionTest.Powers (0 ms) 11: [ RUN ] FunctionTest.ErfInvFloat 11: [ OK ] FunctionTest.ErfInvFloat (0 ms) 11: [ RUN ] FunctionTest.ErfInvDouble 11: [ OK ] FunctionTest.ErfInvDouble (1 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) 11: [----------] 21 tests from FunctionTest (5 ms total) 11: 11: [----------] 2 tests from InvertMatrixTest 11: [ RUN ] InvertMatrixTest.IdentityIsImpotent 11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertMatrixTest.ComputesInverse 11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) 11: [----------] 2 tests from InvertMatrixTest (0 ms total) 11: 11: [----------] 2 tests from InvertBoxMatrixTest 11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent 11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) 11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 11: 11: [----------] 6 tests from RVecTest 11: [ RUN ] RVecTest.CanBeStoredInVector 11: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAsMutable_rvec 11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Array 11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Reference 11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms) 11: [----------] 6 tests from RVecTest (0 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 31 tests from 4 test cases ran. (5 ms total) 11: [ PASSED ] 31 tests. 11/33 Test #11: MathUnitTests .................... Passed 0.02 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/basic/bin/mdrunutility-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12: [==========] Running 17 tests from 1 test case. 12: [----------] Global test environment set-up. 12: [----------] 17 tests from ThreadAffinityTest 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled 12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 12: NOTE: Affinity setting failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 12: NOTE: Affinity setting for 1/2 threads failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) 12: [----------] 17 tests from ThreadAffinityTest (5 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 17 tests from 1 test case ran. (5 ms total) 12: [ PASSED ] 17 tests. 12/33 Test #12: MdrunUtilityUnitTests ............ Passed 0.02 sec test 13 Start 13: MdrunUtilityMpiUnitTests 13: Test command: /<>/build/basic/bin/mdrunutility-mpi-test "-ntmpi" "4" "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 13: Test timeout computed to be: 30 13: [==========] Running 13 tests from 2 test cases. 13: [----------] Global test environment set-up. 13: [----------] 6 tests from ThreadAffinityMultiRankTest 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode 13: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (3 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride 13: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (3 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 13: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (2 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 13: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) 13: [----------] 6 tests from ThreadAffinityMultiRankTest (11 ms total) 13: 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (3 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (12 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 13 tests from 2 test cases ran. (24 ms total) 13: [ PASSED ] 13 tests. 13/33 Test #13: MdrunUtilityMpiUnitTests ......... Passed 0.04 sec test 14 Start 14: OnlineHelpUnitTests 14: Test command: /<>/build/basic/bin/onlinehelp-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/OnlineHelpUnitTests.xml" 14: Test timeout computed to be: 30 14: [==========] Running 22 tests from 4 test cases. 14: [----------] Global test environment set-up. 14: [----------] 6 tests from TextTableFormatterTest 14: [ RUN ] TextTableFormatterTest.HandlesBasicCase 14: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesIndentation 14: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 14: [----------] 6 tests from TextTableFormatterTest (2 ms total) 14: 14: [----------] 3 tests from HelpManagerTest 14: [ RUN ] HelpManagerTest.HandlesRootTopic 14: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 14: [ RUN ] HelpManagerTest.HandlesSubTopics 14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 14: [ RUN ] HelpManagerTest.HandlesInvalidTopics 14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) 14: [----------] 3 tests from HelpManagerTest (0 ms total) 14: 14: [----------] 2 tests from HelpTopicFormattingTest 14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (1 ms) 14: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) 14: 14: [----------] 11 tests from HelpWriterContextTest 14: [ RUN ] HelpWriterContextTest.FormatsParagraphs 14: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralText 14: [ OK ] HelpWriterContextTest.FormatsLiteralText (1 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsBulletList 14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (1 ms) 14: [ RUN ] HelpWriterContextTest.FormatsGridTable 14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsTitles 14: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 14: [----------] 11 tests from HelpWriterContextTest (2 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 22 tests from 4 test cases ran. (5 ms total) 14: [ PASSED ] 22 tests. 14/33 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec test 15 Start 15: OptionsUnitTests 15: Test command: /<>/build/basic/bin/options-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/OptionsUnitTests.xml" 15: Test timeout computed to be: 30 15: [==========] Running 110 tests from 18 test cases. 15: [----------] Global test environment set-up. 15: [----------] 5 tests from AbstractOptionStorageTest 15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 15: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 15: 15: [----------] 8 tests from FileNameOptionTest 15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 15: [----------] 8 tests from FileNameOptionTest (0 ms total) 15: 15: [----------] 15 tests from FileNameOptionManagerTest 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (1 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) 15: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 15: 15: [----------] 1 test from OptionsTest 15: [ RUN ] OptionsTest.FailsOnNonsafeStorage 15: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) 15: [----------] 1 test from OptionsTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerTest 15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter 15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMissingValue 15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesExtraValue 15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesGroups 15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesSections 15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 15: [----------] 9 tests from OptionsAssignerTest (0 ms total) 15: 15: [----------] 4 tests from OptionsAssignerBooleanTest 15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue 15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue 15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo 15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) 15: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) 15: 15: [----------] 13 tests from OptionsAssignerIntegerTest 15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet 15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues 15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) 15: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 15: 15: [----------] 5 tests from OptionsAssignerDoubleTest 15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue 15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) 15: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerStringTest 15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue 15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 15: 15: [----------] 6 tests from OptionsAssignerEnumTest 15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 15: 15: [----------] 8 tests from RepeatingOptionSectionTest 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) 15: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) 15: 15: [----------] 1 test from TimeUnitManagerTest 15: [ RUN ] TimeUnitManagerTest.BasicOperations 15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms) 15: [----------] 1 test from TimeUnitManagerTest (0 ms total) 15: 15: [----------] 4 tests from TimeUnitBehaviorTest 15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue 15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) 15: [----------] 4 tests from TimeUnitBehaviorTest (1 ms total) 15: 15: [----------] 2 tests from TreeValueSupportAssignTest 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) 15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 15: 15: [----------] 1 test from TreeValueSupportAssignErrorTest 15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) 15: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 15: 15: [----------] 5 tests from TreeValueSupportCheckTest 15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 15: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 15: 15: [----------] 6 tests from TreeValueSupportAdjustTest 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (1 ms) 15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 15: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 15: 15: [----------] 8 tests from TreeValueSupportTest 15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsInt64Option 15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsStringOption 15: [ OK ] TreeValueSupportTest.SupportsStringOption (1 ms) 15: [ RUN ] TreeValueSupportTest.SupportsFloatOption 15: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumOption 15: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 15: [----------] 8 tests from TreeValueSupportTest (1 ms total) 15: 15: [----------] Global test environment tear-down 15: [==========] 110 tests from 18 test cases ran. (6 ms total) 15: [ PASSED ] 110 tests. 15/33 Test #15: OptionsUnitTests ................. Passed 0.02 sec test 16 Start 16: RandomUnitTests 16: Test command: /<>/build/basic/bin/random-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/RandomUnitTests.xml" 16: Test timeout computed to be: 30 16: [==========] Running 44 tests from 10 test cases. 16: [----------] Global test environment set-up. 16: [----------] 4 tests from ExponentialDistributionTest 16: [ RUN ] ExponentialDistributionTest.Output 16: [ OK ] ExponentialDistributionTest.Output (0 ms) 16: [ RUN ] ExponentialDistributionTest.Logical 16: [ OK ] ExponentialDistributionTest.Logical (0 ms) 16: [ RUN ] ExponentialDistributionTest.Reset 16: [ OK ] ExponentialDistributionTest.Reset (0 ms) 16: [ RUN ] ExponentialDistributionTest.AltParam 16: [ OK ] ExponentialDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 16: 16: [----------] 4 tests from GammaDistributionTest 16: [ RUN ] GammaDistributionTest.Output 16: [ OK ] GammaDistributionTest.Output (1 ms) 16: [ RUN ] GammaDistributionTest.Logical 16: [ OK ] GammaDistributionTest.Logical (0 ms) 16: [ RUN ] GammaDistributionTest.Reset 16: [ OK ] GammaDistributionTest.Reset (0 ms) 16: [ RUN ] GammaDistributionTest.AltParam 16: [ OK ] GammaDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from GammaDistributionTest (1 ms total) 16: 16: [----------] 4 tests from NormalDistributionTest 16: [ RUN ] NormalDistributionTest.Output 16: [ OK ] NormalDistributionTest.Output (0 ms) 16: [ RUN ] NormalDistributionTest.Logical 16: [ OK ] NormalDistributionTest.Logical (0 ms) 16: [ RUN ] NormalDistributionTest.Reset 16: [ OK ] NormalDistributionTest.Reset (0 ms) 16: [ RUN ] NormalDistributionTest.AltParam 16: [ OK ] NormalDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from NormalDistributionTest (0 ms total) 16: 16: [----------] 1 test from SeedTest 16: [ RUN ] SeedTest.makeRandomSeed 16: [ OK ] SeedTest.makeRandomSeed (0 ms) 16: [----------] 1 test from SeedTest (0 ms total) 16: 16: [----------] 6 tests from TabulatedNormalDistributionTest 16: [ RUN ] TabulatedNormalDistributionTest.Output14 16: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Output16 16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Logical 16: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Reset 16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.AltParam 16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) 16: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 16: 16: [----------] 1 test from TabulatedNormalDistributionTableTest 16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties 16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) 16: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 16: 16: [----------] 6 tests from ThreeFry2x64Test 16: [ RUN ] ThreeFry2x64Test.Logical 16: [ OK ] ThreeFry2x64Test.Logical (0 ms) 16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence 16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (1 ms) 16: [ RUN ] ThreeFry2x64Test.Reseed 16: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 16: [ RUN ] ThreeFry2x64Test.Discard 16: [ OK ] ThreeFry2x64Test.Discard (0 ms) 16: [ RUN ] ThreeFry2x64Test.InvalidCounter 16: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 16: [----------] 6 tests from ThreeFry2x64Test (1 ms total) 16: 16: [----------] 4 tests from UniformIntDistributionTest 16: [ RUN ] UniformIntDistributionTest.Output 16: [ OK ] UniformIntDistributionTest.Output (0 ms) 16: [ RUN ] UniformIntDistributionTest.Logical 16: [ OK ] UniformIntDistributionTest.Logical (0 ms) 16: [ RUN ] UniformIntDistributionTest.Reset 16: [ OK ] UniformIntDistributionTest.Reset (0 ms) 16: [ RUN ] UniformIntDistributionTest.AltParam 16: [ OK ] UniformIntDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 16: 16: [----------] 5 tests from UniformRealDistributionTest 16: [ RUN ] UniformRealDistributionTest.GenerateCanonical 16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Output 16: [ OK ] UniformRealDistributionTest.Output (0 ms) 16: [ RUN ] UniformRealDistributionTest.Logical 16: [ OK ] UniformRealDistributionTest.Logical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Reset 16: [ OK ] UniformRealDistributionTest.Reset (0 ms) 16: [ RUN ] UniformRealDistributionTest.AltParam 16: [ OK ] UniformRealDistributionTest.AltParam (0 ms) 16: [----------] 5 tests from UniformRealDistributionTest (0 ms total) 16: 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (1 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 44 tests from 10 test cases ran. (7 ms total) 16: [ PASSED ] 44 tests. 16/33 Test #16: RandomUnitTests .................. Passed 0.04 sec test 17 Start 17: TableUnitTests 17: Test command: /<>/build/basic/bin/table-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TableUnitTests.xml" 17: Test timeout computed to be: 30 17: [==========] Running 16 tests from 2 test cases. 17: [----------] Global test environment set-up. 17: [----------] 8 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (5 ms) 17: [ RUN ] SplineTableTest/0.Sinc 17: [ OK ] SplineTableTest/0.Sinc (2 ms) 17: [ RUN ] SplineTableTest/0.LJ12 17: [ OK ] SplineTableTest/0.LJ12 (50 ms) 17: [ RUN ] SplineTableTest/0.PmeCorrection 17: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) 17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/0.TwoFunctions 17: [ OK ] SplineTableTest/0.TwoFunctions (101 ms) 17: [ RUN ] SplineTableTest/0.ThreeFunctions 17: [ OK ] SplineTableTest/0.ThreeFunctions (109 ms) 17: [----------] 8 tests from SplineTableTest/0 (274 ms total) 17: 17: [----------] 8 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (5 ms) 17: [ RUN ] SplineTableTest/1.Sinc 17: [ OK ] SplineTableTest/1.Sinc (2 ms) 17: [ RUN ] SplineTableTest/1.LJ12 17: [ OK ] SplineTableTest/1.LJ12 (9 ms) 17: [ RUN ] SplineTableTest/1.PmeCorrection 17: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (3 ms) 17: [ RUN ] SplineTableTest/1.TwoFunctions 17: [ OK ] SplineTableTest/1.TwoFunctions (17 ms) 17: [ RUN ] SplineTableTest/1.ThreeFunctions 17: [ OK ] SplineTableTest/1.ThreeFunctions (18 ms) 17: [----------] 8 tests from SplineTableTest/1 (58 ms total) 17: 17: [----------] Global test environment tear-down 17: [==========] 16 tests from 2 test cases ran. (332 ms total) 17: [ PASSED ] 16 tests. 17/33 Test #17: TableUnitTests ................... Passed 0.35 sec test 18 Start 18: TaskAssignmentUnitTests 18: Test command: /<>/build/basic/bin/taskassignment-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TaskAssignmentUnitTests.xml" 18: Test timeout computed to be: 30 18: [==========] Running 3 tests from 1 test case. 18: [----------] Global test environment set-up. 18: [----------] 3 tests from GpuIdStringHandlingTest 18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork 18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms) 18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) 18: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 18: 18: [----------] Global test environment tear-down 18: [==========] 3 tests from 1 test case ran. (1 ms total) 18: [ PASSED ] 3 tests. 18/33 Test #18: TaskAssignmentUnitTests .......... Passed 0.01 sec test 19 Start 19: UtilityUnitTests 19: Test command: /<>/build/basic/bin/utility-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/UtilityUnitTests.xml" 19: Test timeout computed to be: 30 19: [==========] Running 307 tests from 49 test cases. 19: [----------] Global test environment set-up. 19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/0 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/1 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/2 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/3 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/4 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/5 (0 ms total) 19: 19: [----------] 1 test from EmptyArrayRefTest 19: [ RUN ] EmptyArrayRefTest.IsEmpty 19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyArrayRefTest (0 ms total) 19: 19: [----------] 1 test from EmptyConstArrayRefTest 19: [ RUN ] EmptyConstArrayRefTest.IsEmpty 19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/0 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/3 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/4 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/8 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/9 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/10 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/12 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/16 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/19 (0 ms total) 19: 19: [----------] 4 tests from KeyValueTreeSerializerTest 19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (1 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 19: 19: [----------] 6 tests from TreeValueTransformTest 19: [ RUN ] TreeValueTransformTest.SimpleTransforms 19: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (1 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromString 19: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 19: [ RUN ] TreeValueTransformTest.ScopedTransformRules 19: [ OK ] TreeValueTransformTest.ScopedTransformRules (1 ms) 19: [----------] 6 tests from TreeValueTransformTest (2 ms total) 19: 19: [----------] 1 test from TreeValueTransformErrorTest 19: [ RUN ] TreeValueTransformErrorTest.ConversionError 19: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) 19: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) 19: 19: [----------] 5 tests from LoggerTest 19: [ RUN ] LoggerTest.EmptyLoggerWorks 19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToStream 19: [ OK ] LoggerTest.LogsToStream (0 ms) 19: [ RUN ] LoggerTest.LogsToFile 19: [ OK ] LoggerTest.LogsToFile (0 ms) 19: [ RUN ] LoggerTest.LevelFilteringWorks 19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToMultipleStreams 19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 19: [----------] 5 tests from LoggerTest (2 ms total) 19: 19: [----------] 4 tests from MutexBasicTest 19: [ RUN ] MutexBasicTest.CanBeMade 19: [ OK ] MutexBasicTest.CanBeMade (0 ms) 19: [ RUN ] MutexBasicTest.CanBeLocked 19: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeTryLocked 19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) 19: [----------] 4 tests from MutexBasicTest (0 ms total) 19: 19: [----------] 3 tests from MutexTaskTest 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (14 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) 19: [----------] 3 tests from MutexTaskTest (15 ms total) 19: 19: [----------] 2 tests from PathTest 19: [ RUN ] PathTest.StripSourcePrefixWorks 19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks 19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms) 19: [----------] 2 tests from PathTest (0 ms total) 19: 19: [----------] 7 tests from StringUtilityTest 19: [ RUN ] StringUtilityTest.StartsWith 19: [ OK ] StringUtilityTest.StartsWith (0 ms) 19: [ RUN ] StringUtilityTest.EndsWith 19: [ OK ] StringUtilityTest.EndsWith (0 ms) 19: [ RUN ] StringUtilityTest.StripSuffixIfPresent 19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms) 19: [ RUN ] StringUtilityTest.StripString 19: [ OK ] StringUtilityTest.StripString (0 ms) 19: [ RUN ] StringUtilityTest.SplitString 19: [ OK ] StringUtilityTest.SplitString (0 ms) 19: [ RUN ] StringUtilityTest.SplitDelimitedString 19: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) 19: [----------] 7 tests from StringUtilityTest (1 ms total) 19: 19: [----------] 2 tests from FormatStringTest 19: [ RUN ] FormatStringTest.HandlesBasicFormatting 19: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 19: [ RUN ] FormatStringTest.HandlesLongStrings 19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) 19: [----------] 2 tests from FormatStringTest (0 ms total) 19: 19: [----------] 1 test from StringFormatterTest 19: [ RUN ] StringFormatterTest.HandlesBasicFormatting 19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms) 19: [----------] 1 test from StringFormatterTest (0 ms total) 19: 19: [----------] 1 test from formatAndJoinTest 19: [ RUN ] formatAndJoinTest.Works 19: [ OK ] formatAndJoinTest.Works (0 ms) 19: [----------] 1 test from formatAndJoinTest (0 ms total) 19: 19: [----------] 1 test from JoinStringsTest 19: [ RUN ] JoinStringsTest.Works 19: [ OK ] JoinStringsTest.Works (0 ms) 19: [----------] 1 test from JoinStringsTest (0 ms total) 19: 19: [----------] 6 tests from ReplaceAllTest 19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesNoMatches 19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds 19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries 19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) 19: [----------] 6 tests from ReplaceAllTest (0 ms total) 19: 19: [----------] 10 tests from TextLineWrapperTest 19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectly 19: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndent 19: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 19: [----------] 10 tests from TextLineWrapperTest (1 ms total) 19: 19: [----------] 6 tests from TextWriterTest 19: [ RUN ] TextWriterTest.WritesLines 19: [ OK ] TextWriterTest.WritesLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInParts 19: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 19: [ RUN ] TextWriterTest.WritesWrappedLines 19: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 19: [ RUN ] TextWriterTest.TracksNewlines 19: [ OK ] TextWriterTest.TracksNewlines (0 ms) 19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) 19: [----------] 6 tests from TextWriterTest (0 ms total) 19: 19: [----------] 1 test from TypeTraitsTest 19: [ RUN ] TypeTraitsTest.IsIntegralConstant 19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) 19: [----------] 1 test from TypeTraitsTest (0 ms total) 19: 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 19: 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (1 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (1 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (2 ms total) 19: 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (1 ms) 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 307 tests from 49 test cases ran. (33 ms total) 19: [ PASSED ] 307 tests. 19/33 Test #19: UtilityUnitTests ................. Passed 0.06 sec test 20 Start 20: FileIOTests 20: Test command: /<>/build/basic/bin/fileio-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/FileIOTests.xml" 20: Test timeout computed to be: 30 20: [==========] Running 15 tests from 3 test cases. 20: [----------] Global test environment set-up. 20: [----------] 9 tests from ReadTest 20: [ RUN ] ReadTest.get_eint_ReadsInteger 20: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_eint64_ReadsInteger 20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsInteger 20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsFloat 20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms) 20: [ RUN ] ReadTest.get_ereal_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not a 20: real value 20: 20: 20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) 20: [----------] 9 tests from ReadTest (0 ms total) 20: 20: [----------] 2 tests from TngTest 20: [ RUN ] TngTest.CanOpenTngFile 20: [ OK ] TngTest.CanOpenTngFile (0 ms) 20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) 20: [----------] 2 tests from TngTest (0 ms total) 20: 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (7 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 15 tests from 3 test cases ran. (7 ms total) 20: [ PASSED ] 15 tests. 20/33 Test #20: FileIOTests ...................... Passed 0.02 sec test 21 Start 21: PullTest 21: Test command: /<>/build/basic/bin/pull-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/PullTest.xml" 21: Test timeout computed to be: 30 21: [==========] Running 5 tests from 1 test case. 21: [----------] Global test environment set-up. 21: [----------] 5 tests from PullTest 21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox 21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox 21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox 21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) 21: [----------] 5 tests from PullTest (0 ms total) 21: 21: [----------] Global test environment tear-down 21: [==========] 5 tests from 1 test case ran. (0 ms total) 21: [ PASSED ] 5 tests. 21/33 Test #21: PullTest ......................... Passed 0.01 sec test 22 Start 22: AwhTest 22: Test command: /<>/build/basic/bin/awh-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/AwhTest.xml" 22: Test timeout computed to be: 30 22: [==========] Running 12 tests from 4 test cases. 22: [----------] Global test environment set-up. 22: [----------] 1 test from BiasTest 22: [ RUN ] BiasTest.DetectsCovering 22: [ OK ] BiasTest.DetectsCovering (1 ms) 22: [----------] 1 test from BiasTest (1 ms total) 22: 22: [----------] 1 test from gridTest 22: [ RUN ] gridTest.neighborhood 22: [ OK ] gridTest.neighborhood (3 ms) 22: [----------] 1 test from gridTest (3 ms total) 22: 22: [----------] 8 tests from WithParameters/BiasTest 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) 22: [----------] 8 tests from WithParameters/BiasTest (6 ms total) 22: 22: [----------] 2 tests from WithParameters/BiasStateTest 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 22: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 22: 22: [----------] Global test environment tear-down 22: [==========] 12 tests from 4 test cases ran. (10 ms total) 22: [ PASSED ] 12 tests. 22/33 Test #22: AwhTest .......................... Passed 0.02 sec test 23 Start 23: SimdUnitTests 23: Test command: /<>/build/basic/bin/simd-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/SimdUnitTests.xml" 23: Test timeout computed to be: 30 23: [==========] Running 86 tests from 3 test cases. 23: [----------] Global test environment set-up. 23: [----------] 41 tests from SimdScalarTest 23: [ RUN ] SimdScalarTest.load 23: [ OK ] SimdScalarTest.load (0 ms) 23: [ RUN ] SimdScalarTest.loadU 23: [ OK ] SimdScalarTest.loadU (0 ms) 23: [ RUN ] SimdScalarTest.store 23: [ OK ] SimdScalarTest.store (0 ms) 23: [ RUN ] SimdScalarTest.storeU 23: [ OK ] SimdScalarTest.storeU (0 ms) 23: [ RUN ] SimdScalarTest.setZero 23: [ OK ] SimdScalarTest.setZero (0 ms) 23: [ RUN ] SimdScalarTest.andNot 23: [ OK ] SimdScalarTest.andNot (0 ms) 23: [ RUN ] SimdScalarTest.fma 23: [ OK ] SimdScalarTest.fma (0 ms) 23: [ RUN ] SimdScalarTest.fms 23: [ OK ] SimdScalarTest.fms (0 ms) 23: [ RUN ] SimdScalarTest.fnma 23: [ OK ] SimdScalarTest.fnma (0 ms) 23: [ RUN ] SimdScalarTest.fnms 23: [ OK ] SimdScalarTest.fnms (0 ms) 23: [ RUN ] SimdScalarTest.maskAdd 23: [ OK ] SimdScalarTest.maskAdd (0 ms) 23: [ RUN ] SimdScalarTest.maskzMul 23: [ OK ] SimdScalarTest.maskzMul (0 ms) 23: [ RUN ] SimdScalarTest.maskzFma 23: [ OK ] SimdScalarTest.maskzFma (0 ms) 23: [ RUN ] SimdScalarTest.abs 23: [ OK ] SimdScalarTest.abs (0 ms) 23: [ RUN ] SimdScalarTest.max 23: [ OK ] SimdScalarTest.max (0 ms) 23: [ RUN ] SimdScalarTest.min 23: [ OK ] SimdScalarTest.min (0 ms) 23: [ RUN ] SimdScalarTest.round 23: [ OK ] SimdScalarTest.round (0 ms) 23: [ RUN ] SimdScalarTest.trunc 23: [ OK ] SimdScalarTest.trunc (0 ms) 23: [ RUN ] SimdScalarTest.reduce 23: [ OK ] SimdScalarTest.reduce (0 ms) 23: [ RUN ] SimdScalarTest.testBits 23: [ OK ] SimdScalarTest.testBits (0 ms) 23: [ RUN ] SimdScalarTest.anyTrue 23: [ OK ] SimdScalarTest.anyTrue (0 ms) 23: [ RUN ] SimdScalarTest.selectByMask 23: [ OK ] SimdScalarTest.selectByMask (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMask 23: [ OK ] SimdScalarTest.selectByNotMask (0 ms) 23: [ RUN ] SimdScalarTest.blend 23: [ OK ] SimdScalarTest.blend (0 ms) 23: [ RUN ] SimdScalarTest.cvtR2I 23: [ OK ] SimdScalarTest.cvtR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvttR2I 23: [ OK ] SimdScalarTest.cvttR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvtI2R 23: [ OK ] SimdScalarTest.cvtI2R (0 ms) 23: [ RUN ] SimdScalarTest.cvtF2D 23: [ OK ] SimdScalarTest.cvtF2D (0 ms) 23: [ RUN ] SimdScalarTest.cvtD2D 23: [ OK ] SimdScalarTest.cvtD2D (0 ms) 23: [ RUN ] SimdScalarTest.loadI 23: [ OK ] SimdScalarTest.loadI (0 ms) 23: [ RUN ] SimdScalarTest.loadUI 23: [ OK ] SimdScalarTest.loadUI (0 ms) 23: [ RUN ] SimdScalarTest.storeI 23: [ OK ] SimdScalarTest.storeI (0 ms) 23: [ RUN ] SimdScalarTest.storeUI 23: [ OK ] SimdScalarTest.storeUI (0 ms) 23: [ RUN ] SimdScalarTest.andNotI 23: [ OK ] SimdScalarTest.andNotI (0 ms) 23: [ RUN ] SimdScalarTest.testBitsI 23: [ OK ] SimdScalarTest.testBitsI (0 ms) 23: [ RUN ] SimdScalarTest.selectByMaskI 23: [ OK ] SimdScalarTest.selectByMaskI (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMaskI 23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms) 23: [ RUN ] SimdScalarTest.blendI 23: [ OK ] SimdScalarTest.blendI (0 ms) 23: [ RUN ] SimdScalarTest.cvtB2IB 23: [ OK ] SimdScalarTest.cvtB2IB (0 ms) 23: [ RUN ] SimdScalarTest.cvtIB2B 23: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 23: [ RUN ] SimdScalarTest.expandScalarsToTriplets 23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) 23: [----------] 41 tests from SimdScalarTest (0 ms total) 23: 23: [----------] 8 tests from SimdScalarUtilTest 23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU 23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU 23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU 23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) 23: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 23: 23: [----------] 37 tests from SimdScalarMathTest 23: [ RUN ] SimdScalarMathTest.copysign 23: [ OK ] SimdScalarMathTest.copysign (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPair 23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms) 23: [ RUN ] SimdScalarMathTest.inv 23: [ OK ] SimdScalarMathTest.inv (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrt 23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdScalarMathTest.log 23: [ OK ] SimdScalarMathTest.log (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2 23: [ OK ] SimdScalarMathTest.exp2 (0 ms) 23: [ RUN ] SimdScalarMathTest.exp 23: [ OK ] SimdScalarMathTest.exp (0 ms) 23: [ RUN ] SimdScalarMathTest.erf 23: [ OK ] SimdScalarMathTest.erf (0 ms) 23: [ RUN ] SimdScalarMathTest.erfc 23: [ OK ] SimdScalarMathTest.erfc (0 ms) 23: [ RUN ] SimdScalarMathTest.sincos 23: [ OK ] SimdScalarMathTest.sincos (0 ms) 23: [ RUN ] SimdScalarMathTest.sin 23: [ OK ] SimdScalarMathTest.sin (0 ms) 23: [ RUN ] SimdScalarMathTest.cos 23: [ OK ] SimdScalarMathTest.cos (0 ms) 23: [ RUN ] SimdScalarMathTest.tan 23: [ OK ] SimdScalarMathTest.tan (0 ms) 23: [ RUN ] SimdScalarMathTest.asin 23: [ OK ] SimdScalarMathTest.asin (0 ms) 23: [ RUN ] SimdScalarMathTest.acos 23: [ OK ] SimdScalarMathTest.acos (0 ms) 23: [ RUN ] SimdScalarMathTest.atan 23: [ OK ] SimdScalarMathTest.atan (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2 23: [ OK ] SimdScalarMathTest.atan2 (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrection 23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection 23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.invSingleAccuracy 23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy 23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.logSingleAccuracy 23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy 23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.expSingleAccuracy 23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy 23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy 23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy 23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy 23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy 23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy 23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy 23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy 23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) 23: [----------] 37 tests from SimdScalarMathTest (1 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 86 tests from 3 test cases ran. (2 ms total) 23: [ PASSED ] 86 tests. 23/33 Test #23: SimdUnitTests .................... Passed 0.02 sec test 24 Start 24: GmxAnaTest 24: Test command: /<>/build/basic/bin/gmxana-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/GmxAnaTest.xml" 24: Test timeout computed to be: 600 24: [==========] Running 12 tests from 2 test cases. 24: [----------] Global test environment set-up. 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: trr version: GMX_trn_file (single precision) 24: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (2 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (3 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (17 ms total) 24: 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (7 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.tng is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (7 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (6 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.gro is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (6 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.pdb is 0.0001 (nm) 24: -> frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (6 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (7 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (39 ms total) 24: 24: [----------] Global test environment tear-down 24: [==========] 12 tests from 2 test cases ran. (57 ms total) 24: [ PASSED ] 12 tests. 24/33 Test #24: GmxAnaTest ....................... Passed 0.07 sec test 25 Start 25: GmxPreprocessTests 25: Test command: /<>/build/basic/bin/gmxpreprocess-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/GmxPreprocessTests.xml" 25: Test timeout computed to be: 30 25: [==========] Running 21 tests from 4 test cases. 25: [----------] Global test environment set-up. 25: [----------] 4 tests from GenconfTest 25: [ RUN ] GenconfTest.nbox_Works 25: [ OK ] GenconfTest.nbox_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_norenumber_Works 25: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_dist_Works 25: [ OK ] GenconfTest.nbox_dist_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_rot_Works 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: [ OK ] GenconfTest.nbox_rot_Works (2 ms) 25: [----------] 4 tests from GenconfTest (5 ms total) 25: 25: [----------] 5 tests from InsertMoleculesTest 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading molecule configuration 25: test two-residue molecule for insertion 25: Containing 2 atoms in 2 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 8 atoms)! 25: 25: Added 1 molecules (out of 1 requested) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 25: 25: Output configuration contains 8 atoms in 4 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 25: Reading molecule configuration 25: test two-residue molecule for insertion 25: Containing 2 atoms in 2 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 2 atoms)! 25: Try 2 success (now 4 atoms)! 25: Try 3 success (now 6 atoms)! 25: Try 4 success (now 8 atoms)! 25: Try 5 success (now 10 atoms)! 25: 25: Added 5 molecules (out of 5 requested) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro 25: 25: Output configuration contains 10 atoms in 10 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading molecule configuration 25: test molecule for insertion 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 8 atoms)! 25: Try 2 success (now 10 atoms)! 25: 25: Added 2 molecules (out of 2 requested) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 25: 25: Output configuration contains 10 atoms in 4 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 25: Reading solute configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: Reading molecule configuration 25: test molecule for insertion 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 650 atoms)! 25: Try 2 success (now 652 atoms)! 25: Try 3 success (now 654 atoms)! 25: Try 4 success (now 656 atoms)! 25: 25: Added 4 molecules (out of 4 requested) 25: Replaced 8 residues (24 atoms) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 25: 25: Output configuration contains 632 atoms in 212 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (16 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 25: Reading molecule configuration 25: test molecule for insertion at origin 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Read 4 positions from file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_5.dat 25: 25: Try 1 success (now 2 atoms)! 25: Try 2 success (now 4 atoms)! 25: Try 3 Try 4 Try 5 Try 6 Try 7 Try 8 Try 9 Try 10 Try 11 Try 12 skipped position (0.990, 2.010, 3.000) 25: Try 13 success (now 6 atoms)! 25: 25: Added 3 molecules (out of 4 requested) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 25: 25: Output configuration contains 6 atoms in 3 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (4 ms) 25: [----------] 5 tests from InsertMoleculesTest (29 ms total) 25: 25: [----------] 8 tests from GetIrTest 25: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp, line 12]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: Ignoring obsolete mdp entry 'title' 25: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps' 25: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (5 ms) 25: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme 25: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (6 ms) 25: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (5 ms) 25: [ RUN ] GetIrTest.DefineHandlesAssignmentOnRhs 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp, line 2]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (5 ms) 25: [ RUN ] GetIrTest.EmptyInputWorks 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.EmptyInputWorks (5 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricField 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp, line 2]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricField (5 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (5 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (5 ms) 25: [----------] 8 tests from GetIrTest (41 ms total) 25: 25: [----------] 4 tests from SolvateTest 25: [ RUN ] SolvateTest.cs_box_Works 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 1x1x1 boxes 25: Solvent box contains 270 atoms in 90 residues 25: Removed 129 solvent atoms due to solvent-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 47 residues 25: Generated solvent containing 141 atoms in 47 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_box_Works_out.gro 25: 25: Output configuration contains 141 atoms in 47 residues 25: Volume : 1.331 (nm^3) 25: Density : 1056.36 (g/l) 25: Number of SOL molecules: 47 25: 25: [ OK ] SolvateTest.cs_box_Works (15 ms) 25: [ RUN ] SolvateTest.cs_cp_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 886 residues 25: Generated solvent containing 2658 atoms in 886 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_Works_out.gro 25: 25: Output configuration contains 2664 atoms in 888 residues 25: Volume : 27.2709 (nm^3) 25: Density : 974.777 (g/l) 25: Number of SOL molecules: 887 25: 25: [ OK ] SolvateTest.cs_cp_Works (65 ms) 25: [ RUN ] SolvateTest.cs_cp_p_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 886 residues 25: Generated solvent containing 2658 atoms in 886 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_out.gro 25: 25: Output configuration contains 2664 atoms in 888 residues 25: Volume : 27.2709 (nm^3) 25: Density : 974.777 (g/l) 25: Number of SOL molecules: 887 25: 25: Processing topology 25: Adding line for 886 solvent molecules to topology file (/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top) 25: [ OK ] SolvateTest.cs_cp_p_Works (67 ms) 25: [ RUN ] SolvateTest.shell_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 1902 solvent atoms more than 1.000000 nm from solute. 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 252 residues 25: Generated solvent containing 756 atoms in 252 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_shell_Works_out.gro 25: 25: Output configuration contains 762 atoms in 254 residues 25: Volume : 27.2709 (nm^3) 25: Density : 279.3 (g/l) 25: Number of SOL molecules: 253 25: 25: [ OK ] SolvateTest.shell_Works (37 ms) 25: [----------] 4 tests from SolvateTest (184 ms total) 25: 25: [----------] Global test environment tear-down 25: [==========] 21 tests from 4 test cases ran. (260 ms total) 25: [ PASSED ] 21 tests. 25/33 Test #25: GmxPreprocessTests ............... Passed 0.28 sec test 26 Start 26: CorrelationsTest 26: Test command: /<>/build/basic/bin/correlations-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/CorrelationsTest.xml" 26: Test timeout computed to be: 30 26: [==========] Running 21 tests from 3 test cases. 26: [----------] Global test environment set-up. 26: [----------] 10 tests from AutocorrTest 26: [ RUN ] AutocorrTest.EacNormal 26: [ OK ] AutocorrTest.EacNormal (8 ms) 26: [ RUN ] AutocorrTest.EacNoNormalize 26: [ OK ] AutocorrTest.EacNoNormalize (5 ms) 26: [ RUN ] AutocorrTest.EacCos 26: [ OK ] AutocorrTest.EacCos (9 ms) 26: [ RUN ] AutocorrTest.EacVector 26: [ OK ] AutocorrTest.EacVector (12 ms) 26: [ RUN ] AutocorrTest.EacRcross 26: [ OK ] AutocorrTest.EacRcross (2 ms) 26: [ RUN ] AutocorrTest.EacP0 26: [ OK ] AutocorrTest.EacP0 (13 ms) 26: [ RUN ] AutocorrTest.EacP1 26: [ OK ] AutocorrTest.EacP1 (13 ms) 26: [ RUN ] AutocorrTest.EacP2 26: [ OK ] AutocorrTest.EacP2 (24 ms) 26: [ RUN ] AutocorrTest.EacP3 26: [ OK ] AutocorrTest.EacP3 (9 ms) 26: [ RUN ] AutocorrTest.EacP4 26: [ OK ] AutocorrTest.EacP4 (13 ms) 26: [----------] 10 tests from AutocorrTest (109 ms total) 26: 26: [----------] 1 test from ManyAutocorrelationTest 26: [ RUN ] ManyAutocorrelationTest.Empty 26: [ OK ] ManyAutocorrelationTest.Empty (0 ms) 26: [----------] 1 test from ManyAutocorrelationTest (0 ms total) 26: 26: [----------] 10 tests from ExpfitTest 26: [ RUN ] ExpfitTest.EffnEXP1 26: [ OK ] ExpfitTest.EffnEXP1 (2 ms) 26: [ RUN ] ExpfitTest.EffnEXP2 26: [ OK ] ExpfitTest.EffnEXP2 (3 ms) 26: [ RUN ] ExpfitTest.EffnEXPEXP 26: [ OK ] ExpfitTest.EffnEXPEXP (6 ms) 26: [ RUN ] ExpfitTest.EffnEXP5 26: [ OK ] ExpfitTest.EffnEXP5 (18 ms) 26: [ RUN ] ExpfitTest.EffnEXP7 26: [ OK ] ExpfitTest.EffnEXP7 (15 ms) 26: [ RUN ] ExpfitTest.EffnEXP9 26: [ OK ] ExpfitTest.EffnEXP9 (94 ms) 26: [ RUN ] ExpfitTest.EffnERF 26: [ OK ] ExpfitTest.EffnERF (7 ms) 26: [ RUN ] ExpfitTest.EffnERREST 26: [ OK ] ExpfitTest.EffnERREST (3 ms) 26: [ RUN ] ExpfitTest.EffnVAC 26: [ OK ] ExpfitTest.EffnVAC (30 ms) 26: [ RUN ] ExpfitTest.EffnPRES 26: [ OK ] ExpfitTest.EffnPRES (62 ms) 26: [----------] 10 tests from ExpfitTest (241 ms total) 26: 26: [----------] Global test environment tear-down 26: [==========] 21 tests from 3 test cases ran. (361 ms total) 26: [ PASSED ] 21 tests. 26/33 Test #26: CorrelationsTest ................. Passed 0.38 sec test 27 Start 27: AnalysisDataUnitTests 27: Test command: /<>/build/basic/bin/analysisdata-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/AnalysisDataUnitTests.xml" 27: Test timeout computed to be: 30 27: [==========] Running 69 tests from 14 test cases. 27: [----------] Global test environment set-up. 27: [----------] 3 tests from AnalysisDataInitializationTest 27: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 27: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 27: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules 27: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (1 ms) 27: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 27: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) 27: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (0 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 27: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/0 (6 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 27: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (0 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/1 (8 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 27: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/2 (8 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (2 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 27: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (0 ms) 27: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (1 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/3 (9 ms total) 27: 27: [----------] 4 tests from AnalysisArrayDataTest 27: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly 27: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisArrayDataTest.StorageWorks 27: [ OK ] AnalysisArrayDataTest.StorageWorks (1 ms) 27: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 27: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 27: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 27: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) 27: [----------] 4 tests from AnalysisArrayDataTest (2 ms total) 27: 27: [----------] 6 tests from AverageModuleTest 27: [ RUN ] AverageModuleTest.BasicTest 27: [ OK ] AverageModuleTest.BasicTest (1 ms) 27: [ RUN ] AverageModuleTest.HandlesMultipointData 27: [ OK ] AverageModuleTest.HandlesMultipointData (2 ms) 27: [ RUN ] AverageModuleTest.HandlesMultipleDataSets 27: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) 27: [ RUN ] AverageModuleTest.HandlesDataSetAveraging 27: [ OK ] AverageModuleTest.HandlesDataSetAveraging (2 ms) 27: [ RUN ] AverageModuleTest.CanCustomizeXAxis 27: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) 27: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 27: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (2 ms) 27: [----------] 6 tests from AverageModuleTest (9 ms total) 27: 27: [----------] 2 tests from FrameAverageModuleTest 27: [ RUN ] FrameAverageModuleTest.BasicTest 27: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 27: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets 27: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 2 tests from FrameAverageModuleTest (3 ms total) 27: 27: [----------] 7 tests from AnalysisHistogramSettingsTest 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange (0 ms) 27: [----------] 7 tests from AnalysisHistogramSettingsTest (0 ms total) 27: 27: [----------] 2 tests from SimpleHistogramModuleTest 27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (2 ms) 27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll 27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) 27: [----------] 2 tests from SimpleHistogramModuleTest (4 ms total) 27: 27: [----------] 3 tests from WeightedHistogramModuleTest 27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly 27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (2 ms) 27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll 27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) 27: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets 27: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (3 ms) 27: [----------] 3 tests from WeightedHistogramModuleTest (7 ms total) 27: 27: [----------] 3 tests from BinAverageModuleTest 27: [ RUN ] BinAverageModuleTest.ComputesCorrectly 27: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) 27: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 27: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 27: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets 27: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from BinAverageModuleTest (5 ms total) 27: 27: [----------] 4 tests from AbstractAverageHistogramTest 27: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly 27: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (3 ms) 27: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 27: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth 27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) 27: [----------] 4 tests from AbstractAverageHistogramTest (9 ms total) 27: 27: [----------] 3 tests from LifetimeModuleTest 27: [ RUN ] LifetimeModuleTest.BasicTest 27: [ OK ] LifetimeModuleTest.BasicTest (1 ms) 27: [ RUN ] LifetimeModuleTest.CumulativeTest 27: [ OK ] LifetimeModuleTest.CumulativeTest (1 ms) 27: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets 27: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from LifetimeModuleTest (4 ms total) 27: 27: [----------] Global test environment tear-down 27: [==========] 69 tests from 14 test cases ran. (75 ms total) 27: [ PASSED ] 69 tests. 27/33 Test #27: AnalysisDataUnitTests ............ Passed 0.09 sec test 28 Start 28: SelectionUnitTests 28: Test command: /<>/build/basic/bin/selection-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/SelectionUnitTests.xml" 28: Test timeout computed to be: 30 28: [==========] Running 190 tests from 10 test cases. 28: [----------] Global test environment set-up. 28: [----------] 1 test from IndexGroupTest 28: [ RUN ] IndexGroupTest.RemovesDuplicates 28: [ OK ] IndexGroupTest.RemovesDuplicates (0 ms) 28: [----------] 1 test from IndexGroupTest (0 ms total) 28: 28: [----------] 15 tests from IndexBlockTest 28: [ RUN ] IndexBlockTest.CreatesUnknownBlock 28: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesAtomBlock 28: [ OK ] IndexBlockTest.CreatesAtomBlock (1 ms) 28: [ RUN ] IndexBlockTest.CreatesResidueBlock 28: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesMoleculeBlock 28: [ OK ] IndexBlockTest.CreatesMoleculeBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion 28: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms) 28: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion 28: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms) 28: [ RUN ] IndexBlockTest.CreatesSingleBlock 28: [ OK ] IndexBlockTest.CreatesSingleBlock (1 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive 28: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksNegative 28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksNegative (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) 28: [----------] 15 tests from IndexBlockTest (2 ms total) 28: 28: [----------] 11 tests from IndexMapTest 28: [ RUN ] IndexMapTest.InitializesAtomBlock 28: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom 28: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 28: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (1 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue 28: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 28: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll 28: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 28: [ RUN ] IndexMapTest.InitializesMoleculeBlock 28: [ OK ] IndexMapTest.InitializesMoleculeBlock (1 ms) 28: [ RUN ] IndexMapTest.MapsSingleBlock 28: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 28: [ RUN ] IndexMapTest.MapsResidueBlocks 28: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 28: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 28: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (1 ms) 28: [ RUN ] IndexMapTest.HandlesMultipleRequests 28: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) 28: [----------] 11 tests from IndexMapTest (4 ms total) 28: 28: [----------] 15 tests from NeighborhoodSearchTest 28: [ RUN ] NeighborhoodSearchTest.SimpleSearch 28: [ OK ] NeighborhoodSearchTest.SimpleSearch (36 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY 28: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (34 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchBox 28: [ OK ] NeighborhoodSearchTest.GridSearchBox (6 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic 28: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (21 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC 28: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (10 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 28: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (5 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox 28: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (6 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 28: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch 28: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (96 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 28: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC 28: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC 28: [ OK ] NeighborhoodSearchTest.HandlesNullPBC (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 28: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions 28: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (8 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 28: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (2 ms) 28: [----------] 15 tests from NeighborhoodSearchTest (225 ms total) 28: 28: [----------] 12 tests from PositionCalculationTest 28: [ RUN ] PositionCalculationTest.ComputesAtomPositions 28: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions 28: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 28: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions 28: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 28: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionMask 28: [ OK ] PositionCalculationTest.ComputesPositionMask (1 ms) 28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (1 ms) 28: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 28: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 28: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (1 ms) 28: [----------] 12 tests from PositionCalculationTest (5 ms total) 28: 28: [----------] 30 tests from SelectionCollectionTest 28: [ RUN ] SelectionCollectionTest.HandlesNoSelections 28: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType 28: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 28: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry 28: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (1 ms) 28: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 28: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 28: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions 28: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions 28: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 28: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes 28: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 28: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (1 ms) 28: [----------] 30 tests from SelectionCollectionTest (15 ms total) 28: 28: [----------] 14 tests from SelectionCollectionInteractiveTest 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 28: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups 28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections 28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 28: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) 28: [----------] 14 tests from SelectionCollectionInteractiveTest (11 ms total) 28: 28: [----------] 66 tests from SelectionCollectionDataTest 28: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 28: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr 28: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResnr 28: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResIndex 28: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 28: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 28: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 28: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype 28: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesChain 28: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMass 28: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesCharge 28: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 28: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode 28: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 28: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBeta 28: [ OK ] SelectionCollectionDataTest.HandlesBeta (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResname 28: [ OK ] SelectionCollectionDataTest.HandlesResname (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 28: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 28: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (8 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier 28: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges 28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (3 ms) 28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology 28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 28: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 28: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections 28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed 28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 28: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 28: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching 28: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 28: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 28: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 28: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 28: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 28: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods 28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic 28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 28: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 28: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables 28: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables 28: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 28: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables 28: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) 28: [----------] 66 tests from SelectionCollectionDataTest (91 ms total) 28: 28: [----------] 17 tests from SelectionOptionTest 28: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 28: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired 28: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 28: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms) 28: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired 28: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) 28: [ RUN ] SelectionOptionTest.ChecksEmptySelections 28: [ OK ] SelectionOptionTest.ChecksEmptySelections (1 ms) 28: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections 28: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooManySelections 28: [ OK ] SelectionOptionTest.HandlesTooManySelections (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewSelections 28: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 28: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesAdjuster 28: [ OK ] SelectionOptionTest.HandlesAdjuster (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 28: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections 28: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 28: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) 28: [----------] 17 tests from SelectionOptionTest (7 ms total) 28: 28: [----------] 9 tests from SelectionFileOptionTest 28: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 28: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 28: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 28: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 28: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 28: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (1 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile 28: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 28: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) 28: [----------] 9 tests from SelectionFileOptionTest (4 ms total) 28: 28: [----------] Global test environment tear-down 28: [==========] 190 tests from 10 test cases ran. (365 ms total) 28: [ PASSED ] 190 tests. 28/33 Test #28: SelectionUnitTests ............... Passed 0.38 sec test 29 Start 29: TrajectoryAnalysisUnitTests 29: Test command: /<>/build/basic/bin/trajectoryanalysis-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TrajectoryAnalysisUnitTests.xml" 29: Test timeout computed to be: 30 29: [==========] Running 68 tests from 13 test cases. 29: [----------] Global test environment set-up. 29: [----------] 5 tests from ClustsizeTest 29: [ RUN ] ClustsizeTest.NoMolDefaultCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 29: There is one group in the index 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 24 29: cmid: 2, cmax: 4, max_size: 6 29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (4 ms) 29: [ RUN ] ClustsizeTest.NoMolShortCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 29: There is one group in the index 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 24 29: cmid: 1, cmax: 6, max_size: 6 29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (3 ms) 29: [ RUN ] ClustsizeTest.MolDefaultCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 2, cmax: 4, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (4 ms) 29: [ RUN ] ClustsizeTest.MolShortCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 1, cmax: 6, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (4 ms) 29: [ RUN ] ClustsizeTest.MolCSize 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 2, cmax: 4, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolCSize (4 ms) 29: [----------] 5 tests from ClustsizeTest (19 ms total) 29: 29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 29: Reading frames from gro file 'Test system', 8 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (6 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 29: Reading frames from gro file 'Test system', 8 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (5 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) 29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (12 ms total) 29: 29: [----------] 11 tests from AngleModuleTest 29: [ RUN ] AngleModuleTest.ComputesSimpleAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesSimpleAngles (6 ms) 29: [ RUN ] AngleModuleTest.ComputesDihedrals 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesDihedrals (6 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorPairAngles (5 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (6 ms) 29: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (6 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (5 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 29: Reading frames from gro file 'Test system for different angles', 33 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (6 ms) 29: [ RUN ] AngleModuleTest.ComputesMultipleAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesMultipleAngles (5 ms) 29: [ RUN ] AngleModuleTest.HandlesDynamicSelections 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesDynamicSelections (5 ms) 29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (6 ms) 29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (6 ms) 29: [----------] 11 tests from AngleModuleTest (64 ms total) 29: 29: [----------] 3 tests from DistanceModuleTest 29: [ RUN ] DistanceModuleTest.ComputesDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2: 29: Number of samples: 5 29: Average distance: 1.43246 nm 29: Standard deviation: 0.96700 nm 29: [ OK ] DistanceModuleTest.ComputesDistances (7 ms) 29: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2: 29: Number of samples: 5 29: Average distance: 1.43246 nm 29: Standard deviation: 0.96700 nm 29: resindex 1 to 4 and atomname CB merge resindex 2 to 5 and atomname CB: 29: Number of samples: 4 29: Average distance: 1.81066 nm 29: Standard deviation: 0.79289 nm 29: [ OK ] DistanceModuleTest.ComputesMultipleDistances (7 ms) 29: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2 and res_cog x < 2.8: 29: Number of samples: 3 29: Average distance: 1.72076 nm 29: Standard deviation: 1.24839 nm 29: [ OK ] DistanceModuleTest.HandlesDynamicSelections (7 ms) 29: [----------] 3 tests from DistanceModuleTest (21 ms total) 29: 29: [----------] 2 tests from FreeVolumeModuleTest 29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for 40 particles. These were set to zero. 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Analyzed 1 frames, last time 0.000 29: cutoff = 0.18 nm 29: probe_radius = 0 nm 29: seed = 13 29: ninsert = 1000 probes per nm^3 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David 29: van der Spoel and Luciano T. Costa 29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium 29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View 29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Free volume 38.02 +/- 0.00 % 29: Total volume 68.92 +/- 0.00 nm^3 29: Number of molecules 340 total mass 63491.38 Dalton 29: Average molar mass: 186.74 Dalton 29: Density rho: 1529.71 +/- 0.00 nm^3 29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 29: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 29: Fractional free volume 0.194 +/- 0.000 29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (229 ms) 29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Analyzed 1 frames, last time 0.000 29: cutoff = 0.18 nm 29: probe_radius = 0 nm 29: seed = 17 29: ninsert = 1000 probes per nm^3 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David 29: van der Spoel and Luciano T. Costa 29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium 29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View 29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Free volume 38.48 +/- 0.00 % 29: Total volume 68.92 +/- 0.00 nm^3 29: Number of molecules 340 total mass 63491.38 Dalton 29: Average molar mass: 186.74 Dalton 29: Density rho: 1529.71 +/- 0.00 nm^3 29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 29: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 29: Fractional free volume 0.200 +/- 0.000 29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (227 ms) 29: [----------] 2 tests from FreeVolumeModuleTest (456 ms total) 29: 29: [----------] 7 tests from PairDistanceModuleTest 29: [ RUN ] PairDistanceModuleTest.ComputesAllDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesAllDistances (6 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (6 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (6 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (6 ms) 29: [----------] 7 tests from PairDistanceModuleTest (39 ms total) 29: 29: [----------] 3 tests from RdfModuleTest 29: [ RUN ] RdfModuleTest.BasicTest 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.BasicTest (44 ms) 29: [ RUN ] RdfModuleTest.CalculatesSurf 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.CalculatesSurf (25 ms) 29: [ RUN ] RdfModuleTest.CalculatesXY 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.CalculatesXY (48 ms) 29: [----------] 3 tests from RdfModuleTest (118 ms total) 29: 29: [----------] 5 tests from SasaModuleTest 29: [ RUN ] SasaModuleTest.BasicTest 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.BasicTest (22 ms) 29: [ RUN ] SasaModuleTest.HandlesSelectedResidues 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesSelectedResidues (13 ms) 29: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (13 ms) 29: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (17 ms) 29: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (16 ms) 29: [----------] 5 tests from SasaModuleTest (84 ms total) 29: 29: [----------] 8 tests from SelectModuleTest 29: [ RUN ] SelectModuleTest.BasicTest 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.BasicTest (11 ms) 29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (8 ms) 29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (9 ms) 29: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (9 ms) 29: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (8 ms) 29: [ RUN ] SelectModuleTest.NormalizesSizes 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.NormalizesSizes (6 ms) 29: [ RUN ] SelectModuleTest.WritesResidueNumbers 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.WritesResidueNumbers (5 ms) 29: [ RUN ] SelectModuleTest.WritesResidueIndices 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.WritesResidueIndices (6 ms) 29: [----------] 8 tests from SelectModuleTest (63 ms total) 29: 29: [----------] 10 tests from SurfaceAreaTest 29: [ RUN ] SurfaceAreaTest.ComputesSinglePoint 29: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 29: [ RUN ] SurfaceAreaTest.ComputesTwoPoints 29: [ OK ] SurfaceAreaTest.ComputesTwoPoints (3 ms) 29: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius 29: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (3 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints12 29: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints32 29: [ OK ] SurfaceAreaTest.SurfacePoints32 (1 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints42 29: [ OK ] SurfaceAreaTest.SurfacePoints42 (1 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints122 29: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) 29: [ RUN ] SurfaceAreaTest.Computes100Points 29: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 29: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 29: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (5 ms) 29: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC 29: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (7 ms) 29: [----------] 10 tests from SurfaceAreaTest (23 ms total) 29: 29: [----------] 4 tests from TrajectoryModuleTest 29: [ RUN ] TrajectoryModuleTest.BasicTest 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.BasicTest (7 ms) 29: [ RUN ] TrajectoryModuleTest.PlotsXOnly 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.PlotsXOnly (7 ms) 29: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (6 ms) 29: [ RUN ] TrajectoryModuleTest.HandlesNoForces 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.HandlesNoForces (5 ms) 29: [----------] 4 tests from TrajectoryModuleTest (25 ms total) 29: 29: [----------] 5 tests from UnionFinderTest 29: [ RUN ] UnionFinderTest.WorksEmpty 29: [ OK ] UnionFinderTest.WorksEmpty (0 ms) 29: [ RUN ] UnionFinderTest.BasicMerges 29: [ OK ] UnionFinderTest.BasicMerges (1 ms) 29: [ RUN ] UnionFinderTest.LargerMerges 29: [ OK ] UnionFinderTest.LargerMerges (0 ms) 29: [ RUN ] UnionFinderTest.LongRightMerge 29: [ OK ] UnionFinderTest.LongRightMerge (0 ms) 29: [ RUN ] UnionFinderTest.LongLeftMerge 29: [ OK ] UnionFinderTest.LongLeftMerge (0 ms) 29: [----------] 5 tests from UnionFinderTest (1 ms total) 29: 29: [----------] 1 test from MappedUnionFinderTest 29: [ RUN ] MappedUnionFinderTest.BasicMerges 29: [ OK ] MappedUnionFinderTest.BasicMerges (0 ms) 29: [----------] 1 test from MappedUnionFinderTest (0 ms total) 29: 29: [----------] Global test environment tear-down 29: [==========] 68 tests from 13 test cases ran. (925 ms total) 29: [ PASSED ] 68 tests. 29/33 Test #29: TrajectoryAnalysisUnitTests ...... Passed 0.94 sec test 30 Start 30: EnergyAnalysisUnitTests 30: Test command: /<>/build/basic/bin/energyanalysis-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/EnergyAnalysisUnitTests.xml" 30: Test timeout computed to be: 30 30: [==========] Running 7 tests from 4 test cases. 30: [----------] Global test environment set-up. 30: [----------] 1 test from DhdlTest 30: [ RUN ] DhdlTest.ExtractDhdl 30: Opened /<>/src/gromacs/energyanalysis/tests/dhdl.edr as double precision energy file 30: Reading file /<>/src/gromacs/energyanalysis/tests/dhdl.tpr, VERSION 2016-dev-20160810-e3ded7f (double precision) 30: Note: file tpx version 110, software tpx version 112 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.010 Reading energy frame 2 time 0.020 Reading energy frame 3 time 0.030 Reading energy frame 4 time 0.040 Reading energy frame 5 time 0.050 Reading energy frame 6 time 0.060 Reading energy frame 7 time 0.070 Reading energy frame 8 time 0.080 Reading energy frame 9 time 0.090 Reading energy frame 10 time 0.100 Reading energy frame 11 time 0.110 Reading energy frame 12 time 0.120 Reading energy frame 13 time 0.130 Reading energy frame 14 time 0.140 Reading energy frame 15 time 0.150 Reading energy frame 16 time 0.160 Reading energy frame 17 time 0.170 Reading energy frame 18 time 0.180 Reading energy frame 19 time 0.190 Reading energy frame 20 time 0.200 Reading energy frame 30 time 0.300 Reading energy frame 40 time 0.400 Reading energy frame 50 time 0.500 Reading energy frame 60 time 0.600 Reading energy frame 70 time 0.700 Reading energy frame 80 time 0.800 Reading energy frame 90 time 0.900 Reading energy frame 100 time 1.000 Last energy frame read 100 time 1.000 30: 30: 30: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /<>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg 30: [ OK ] DhdlTest.ExtractDhdl (15 ms) 30: [----------] 1 test from DhdlTest (16 ms total) 30: 30: [----------] 1 test from OriresTest 30: [ RUN ] OriresTest.ExtractOrires 30: Opened /<>/src/gromacs/energyanalysis/tests/orires.edr as single precision energy file 30: Reading file /<>/src/gromacs/energyanalysis/tests/orires.tpr, VERSION 2017-dev-20170725-fea8651 (single precision) 30: Note: file tpx version 111, software tpx version 112 30: Found 7 orientation restraints with 1 experimentsSelect the orientation restraint labels you want (-1 is all) 30: End your selection with 0 30: Selecting all 7 orientation restraints 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 30: [ OK ] OriresTest.ExtractOrires (15 ms) 30: [----------] 1 test from OriresTest (15 ms total) 30: 30: [----------] 3 tests from EnergyTest 30: [ RUN ] EnergyTest.ExtractEnergy 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) 30: [ OK ] EnergyTest.ExtractEnergy (4 ms) 30: [ RUN ] EnergyTest.ExtractEnergyByNumber 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol) 30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 30: Pres. DC -268.49 3 8.52175 13.2804 (bar) 30: [ OK ] EnergyTest.ExtractEnergyByNumber (4 ms) 30: [ RUN ] EnergyTest.ExtractEnergyMixed 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 4 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: [ OK ] EnergyTest.ExtractEnergyMixed (5 ms) 30: [----------] 3 tests from EnergyTest (14 ms total) 30: 30: [----------] 2 tests from ViscosityTest 30: [ RUN ] ViscosityTest.EinsteinViscosity 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Pres-XX 20.2092 65 717.193 185.978 (bar) 30: Pres-XY -47.7351 39 372.522 207.456 (bar) 30: Pres-XZ 11.477 31 379.79 6.80818 (bar) 30: Pres-YX -47.7106 39 372.525 207.5 (bar) 30: Pres-YY 38.9241 40 803.899 -27.1505 (bar) 30: Pres-YZ -41.3534 45 401.216 114.663 (bar) 30: Pres-ZX 11.5238 31 379.804 6.91707 (bar) 30: Pres-ZY -41.3119 45 401.196 114.743 (bar) 30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar) 30: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: [ OK ] ViscosityTest.EinsteinViscosity (14 ms) 30: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Pres-XX 20.2092 65 717.193 185.978 (bar) 30: Pres-XY -47.7351 39 372.522 207.456 (bar) 30: Pres-XZ 11.477 31 379.79 6.80818 (bar) 30: Pres-YX -47.7106 39 372.525 207.5 (bar) 30: Pres-YY 38.9241 40 803.899 -27.1505 (bar) 30: Pres-YZ -41.3534 45 401.216 114.663 (bar) 30: Pres-ZX 11.5238 31 379.804 6.91707 (bar) 30: Pres-ZY -41.3119 45 401.196 114.743 (bar) 30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar) 30: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: [ OK ] ViscosityTest.EinsteinViscosityIntegral (12 ms) 30: [----------] 2 tests from ViscosityTest (26 ms total) 30: 30: [----------] Global test environment tear-down 30: [==========] 7 tests from 4 test cases ran. (71 ms total) 30: [ PASSED ] 7 tests. 30/33 Test #30: EnergyAnalysisUnitTests .......... Passed 0.09 sec test 31 Start 31: CompatibilityHelpersTests 31: Test command: /<>/build/basic/bin/compat-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/CompatibilityHelpersTests.xml" 31: Test timeout computed to be: 30 31: [==========] Running 1 test from 1 test case. 31: [----------] Global test environment set-up. 31: [----------] 1 test from CompatibilityHelper 31: [ RUN ] CompatibilityHelper.MakeUniqueCompiles 31: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms) 31: [----------] 1 test from CompatibilityHelper (0 ms total) 31: 31: [----------] Global test environment tear-down 31: [==========] 1 test from 1 test case ran. (0 ms total) 31: [ PASSED ] 1 test. 31/33 Test #31: CompatibilityHelpersTests ........ Passed 0.01 sec test 32 Start 32: MdrunTests 32: Test command: /<>/build/basic/bin/mdrun-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdrunTests.xml" 32: Test timeout computed to be: 600 32: [==========] Running 30 tests from 11 test cases. 32: [----------] Global test environment set-up. 32: [----------] 6 tests from BondedInteractionsTest 32: [ RUN ] BondedInteractionsTest.NormalBondWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -117406871 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_NormalBondWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 2 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 23 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 138.580 0.173 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalBondWorks (21 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -1057030763 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_TabulatedBondWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 2 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 17 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 99.8 32: (ns/day) (hour/ns) 32: Performance: 194.937 0.123 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedBondWorks (20 ms) 32: [ RUN ] BondedInteractionsTest.NormalAngleWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -728947263 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_NormalAngleWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 1 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 14 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 168.867 0.142 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalAngleWorks (18 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 1804342123 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_TabulatedAngleWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 1 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 16 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 99.9 32: (ns/day) (hour/ns) 32: Performance: 187.668 0.128 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (19 ms) 32: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -1892796783 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 16 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 99.9 32: (ns/day) (hour/ns) 32: Performance: 185.365 0.129 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalDihedralWorks (18 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 746230133 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 14 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 155.866 0.154 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (20 ms) 32: [----------] 6 tests from BondedInteractionsTest (116 ms total) 32: 32: [----------] 1 test from GromppTest 32: [ RUN ] GromppTest.EmptyMdpFileWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 416336937 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 12.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: NVE simulation: will use the initial temperature of 1046.791 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 32: Calculated rlist for 1x1 atom pair-list as 1.061 nm, buffer size 0.061 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: [ OK ] GromppTest.EmptyMdpFileWorks (45 ms) 32: [----------] 1 test from GromppTest (45 ms total) 32: 32: [----------] 1 test from CompelTest 32: [ RUN ] CompelTest.SwapCanRun 32: 32: NOTE 1 [file /<>/src/programs/mdrun/tests/OctaneSandwich.mdp]: 32: The Berendsen thermostat does not generate the correct kinetic energy 32: distribution. You might want to consider using the V-rescale thermostat. 32: 32: Setting the LD random seed to -1336833914 32: Generated 330891 of the 330891 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 330891 of the 330891 1-4 parameter combinations 32: Excluding 3 bonded neighbours molecule type 'Protein' 32: Excluding 3 bonded neighbours molecule type 'OCT' 32: Excluding 1 bonded neighbours molecule type 'NA' 32: Excluding 1 bonded neighbours molecule type 'CL' 32: Excluding 3 bonded neighbours molecule type 'Protein' 32: Excluding 3 bonded neighbours molecule type 'OCT' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Split0 group 'Ch0' contains 83 atoms. 32: Split1 group 'Ch1' contains 83 atoms. 32: Solvent group 'SOL' contains 11931 atoms. 32: Swap group 'NA+' contains 19 atoms. 32: Swap group 'CL-' contains 19 atoms. 32: Number of degrees of freedom in T-Coupling group System is 27869.00 32: 32: NOTE 2 [file /<>/src/programs/mdrun/tests/OctaneSandwich.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: SWAP: Determining initial numbers of ions per compartment. 32: SWAP: Setting pointers for checkpoint writing 32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules 32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules 32: starting mdrun 'Channel_coco in octane membrane' 32: 2 steps, 0.0 ps. 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 32: Calculated rlist for 1x1 atom pair-list as 1.314 nm, buffer size 0.314 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.260 nm, buffer size 0.260 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 1 Mb of data 32: 32: Writing final coordinates. 32: 32: NOTE: 16 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 1.936 1.936 100.0 32: (ns/day) (hour/ns) 32: Performance: 0.670 35.847 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018.2 (single precision) 32: 32: Reading checkpoint file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.cpt generated: Sat Jun 16 23:42:16 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: SWAP: Setting pointers for checkpoint writing 32: SWAP: Copying channel fluxes from checkpoint file data 32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules 32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules 32: starting mdrun 'Channel_coco in octane membrane' 32: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps). 32: 32: Writing final coordinates. 32: 32: NOTE: 10 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 1.675 1.675 100.0 32: (ns/day) (hour/ns) 32: Performance: 0.774 31.021 32: [ OK ] CompelTest.SwapCanRun (4477 ms) 32: [----------] 1 test from CompelTest (4478 ms total) 32: 32: [----------] 1 test from ImdTest 32: [ RUN ] ImdTest.ImdCanRun 32: 32: NOTE 1 [file /<>/src/programs/mdrun/tests/spc2-IMD.mdp]: 32: The Berendsen thermostat does not generate the correct kinetic energy 32: distribution. You might want to consider using the V-rescale thermostat. 32: 32: Setting the LD random seed to -712301124 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Group 'SecondWaterMolecule' with 3 atoms can be activated for interactive molecular dynamics (IMD). 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/src/programs/mdrun/tests/spc2-IMD.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/ImdTest_ImdCanRun.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 50, rlist from 1.121 to 1.344 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: IMD: Enabled. This simulation will accept incoming IMD connections. 32: IMD: You chose a port number < 1. Will automatically assign a free port. 32: IMD: Pulling from IMD remote is enabled (-imdpull). 32: IMD: Turning on IMD - port for incoming requests is 0. 32: IMD: Setting up incoming socket. 32: IMD: Listening for IMD connection on port 47693. 32: IMD: -imdwait not set, starting simulation. 32: starting mdrun 'spc2' 32: 2 steps, 0.0 ps. 32: turning all bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 32: Calculated rlist for 1x1 atom pair-list as 1.134 nm, buffer size 0.134 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.121 nm, buffer size 0.121 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 245.798 0.098 32: [ OK ] ImdTest.ImdCanRun (24 ms) 32: [----------] 1 test from ImdTest (24 ms total) 32: 32: [----------] 2 tests from MdrunTerminationTest 32: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp, line 6]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1484467750 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 1, rlist from 1.024 to 1 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc2' 32: 100 steps, 0.1 ps. 32: 32: Step 4: Run time exceeded 0.000 hours, will terminate the run 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 164.747 0.146 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018.2 (single precision) 32: 32: Reading checkpoint file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.cpt generated: Sat Jun 16 23:42:18 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 32: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 32: 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc2' 32: 7 steps, 0.0 ps (continuing from step 5, 0.0 ps). 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.002 0.002 100.0 32: (ns/day) (hour/ns) 32: Performance: 109.959 0.218 32: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (33 ms) 32: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp, line 6]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1471677746 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 1, rlist from 1.024 to 1 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc2' 32: 100 steps, 0.1 ps. 32: 32: Step 3: Run time exceeded 0.000 hours, will terminate the run 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 123.027 0.195 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2018.2 (single precision) 32: 32: Reading checkpoint file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.cpt generated: Sat Jun 16 23:42:18 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 32: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 32: 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc2' 32: 6 steps, 0.0 ps (continuing from step 4, 0.0 ps). 32: Checkpoint file is from part 1, new output files will be suffixed '.part0002'. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 77.911 0.308 32: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (36 ms) 32: [----------] 2 tests from MdrunTerminationTest (69 ms total) 32: 32: [----------] 1 test from PmeTest 32: [ RUN ] PmeTest.ReproducesEnergies 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp, line 6]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -505826483 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]: 32: NVE simulation: will use the initial temperature of 1046.791 K for 32: determining the Verlet buffer size 32: 32: Estimate for the relative computational load of the PME mesh part: 1.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]: 32: The optimal PME mesh load for parallel simulations is below 0.5 32: and for highly parallel simulations between 0.25 and 0.33, 32: for higher performance, increase the cut-off and the PME grid spacing. 32: 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 32: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.000 nm, buffer size 0.000 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: Calculating fourier grid dimensions for X Y Z 32: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.059 0.059 100.0 32: (ns/day) (hour/ns) 32: Performance: 30.843 0.778 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.061 0.061 100.0 32: (ns/day) (hour/ns) 32: Performance: 29.617 0.810 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.060 0.060 100.0 32: (ns/day) (hour/ns) 32: Performance: 30.243 0.794 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (8229 ms) 32: [----------] 1 test from PmeTest (8229 ms total) 32: 32: [----------] 3 tests from Checking/InitialConstraintsTest 32: [ RUN ] Checking/InitialConstraintsTest.Works/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1148904957 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 52.391 0.458 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (60 ms) 32: [ RUN ] Checking/InitialConstraintsTest.Works/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 278310257 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 45.788 0.524 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (60 ms) 32: [ RUN ] Checking/InitialConstraintsTest.Works/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: Integrator method md-vv-avek is implemented primarily for validation 32: purposes; for molecular dynamics, you should probably be using md or md-vv 32: 32: Setting the LD random seed to 1360094998 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2.tpr, VERSION 2018.2 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 49.864 0.481 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (60 ms) 32: [----------] 3 tests from Checking/InitialConstraintsTest (180 ms total) 32: 32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -584805493 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.trr' 32: 32: trr version: GMX_trn_file (single precision) 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 285.120 0.084 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 (18 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1872252651 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.tng' 32: 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 188.842 0.127 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 (18 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1297840463 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.xtc' 32: 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 99.8 32: (ns/day) (hour/ns) 32: Performance: 372.444 0.064 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 (18 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1690079197 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.gro' 32: 32: Reading frames from gro file '', 6 atoms. 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 262.695 0.091 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 (17 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1363877839 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.pdb' 32: 32: Reading frames from pdb file Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: 't= 0.00000', 6 atoms 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 319.707 0.075 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 (18 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 402452196 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.g96' 32: 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 216.804 0.111 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 (17 ms) 32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun (106 ms total) 32: 32: [----------] 3 tests from MdrunCanWrite/Trajectories 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp, line 12]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 1830126847 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.008 0.008 100.0 32: (ns/day) (hour/ns) 32: Performance: 73.165 0.328 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (66 ms) 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1918688111 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.009 0.009 100.0 32: (ns/day) (hour/ns) 32: Performance: 66.851 0.359 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (67 ms) 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -774742505 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.008 0.008 100.0 32: (ns/day) (hour/ns) 32: Performance: 73.515 0.326 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (67 ms) 32: [----------] 3 tests from MdrunCanWrite/Trajectories (200 ms total) 32: 32: [----------] 3 tests from MdrunCanWrite/NptTrajectories 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -190160613 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 55.069 0.436 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (62 ms) 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 1823985240 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 54.653 0.439 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (63 ms) 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -2024401067 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2.tpr, VERSION 2018.2 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.006 0.006 100.0 32: (ns/day) (hour/ns) 32: Performance: 46.139 0.520 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (67 ms) 32: [----------] 3 tests from MdrunCanWrite/NptTrajectories (192 ms total) 32: 32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -979124988 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 38.291 0.627 32: Reading frame 0 time 0.000 32: # Atoms 6 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (24 ms) 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 45087504 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 37.354 0.643 32: Reading frame 0 time 0.000 32: # Atoms 6 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (24 ms) 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1982276067 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.tpr, VERSION 2018.2 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 34.505 0.696 32: Reading frame 0 time 0.000 32: # Atoms 3 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (24 ms) 32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (72 ms total) 32: 32: [----------] Global test environment tear-down 32: [==========] 30 tests from 11 test cases ran. (13711 ms total) 32: [ PASSED ] 30 tests. 32/33 Test #32: MdrunTests ....................... Passed 13.76 sec test 33 Start 33: MdrunMpiTests 33: Test command: /<>/build/basic/bin/mdrun-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdrunMpiTests.xml" 33: Test timeout computed to be: 600 33: [==========] Running 3 tests from 3 test cases. 33: [----------] Global test environment set-up. 33: [----------] 1 test from MultiSimTerminationTest 33: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 33: [ OK ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (1 ms) 33: [----------] 1 test from MultiSimTerminationTest (1 ms total) 33: 33: [----------] 1 test from ReplicaExchangeTerminationTest 33: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 33: [ OK ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms) 33: [----------] 1 test from ReplicaExchangeTerminationTest (0 ms total) 33: 33: [----------] 1 test from DomainDecompositionSpecialCasesTest 33: [ RUN ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks 33: 33: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: For a correct single-point energy evaluation with nsteps = 0, use 33: continuation = yes to avoid constraining the input coordinates. 33: 33: Setting the LD random seed to 1125160307 33: Generated 3 of the 3 non-bonded parameter combinations 33: Generating 1-4 interactions: fudge = 0.5 33: Generated 3 of the 3 1-4 parameter combinations 33: Excluding 2 bonded neighbours molecule type 'SOL' 33: Removing all charge groups because cutoff-scheme=Verlet 33: Number of degrees of freedom in T-Coupling group rest is 9.00 33: 33: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: NVE simulation with an initial temperature of zero: will use a Verlet 33: buffer of 10%. Check your energy drift! 33: 33: 33: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: You are using a plain Coulomb cut-off, which might produce artifacts. 33: You might want to consider using PME electrostatics. 33: 33: 33: 33: There were 3 notes 33: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 33: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks.tpr, VERSION 2018.2 (single precision) 33: Can not increase nstlist because an NVE ensemble is used 33: Using 2 MPI threads 33: Using 1 OpenMP thread per tMPI thread 33: 33: 33: NOTE: The number of threads is not equal to the number of (logical) cores 33: and the -pin option is set to auto: will not pin threads to cores. 33: This can lead to significant performance degradation. 33: Consider using -pin on (and -pinoffset in case you run multiple jobs). 33: 33: WARNING: Using the slow plain C kernels. This should 33: not happen during routine usage on supported platforms. 33: starting mdrun 'spc2' 33: 0 steps, 0.0 ps. 33: 33: NOTE: 11 % of the run time was spent in domain decomposition, 33: 63 % of the run time was spent in pair search, 33: you might want to increase nstlist (this has no effect on accuracy) 33: 33: Core t (s) Wall t (s) (%) 33: Time: 0.002 0.001 200.0 33: (ns/day) (hour/ns) 33: Performance: 106.726 0.225 33: This run will generate roughly 0 Mb of data 33: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (23 ms) 33: [----------] 1 test from DomainDecompositionSpecialCasesTest (23 ms total) 33: 33: [----------] Global test environment tear-down 33: [==========] 3 tests from 3 test cases ran. (24 ms total) 33: [ PASSED ] 3 tests. 33: 33: YOU HAVE 4 DISABLED TESTS 33: 33/33 Test #33: MdrunMpiTests .................... Passed 0.04 sec 100% tests passed, 0 tests failed out of 33 Label Time Summary: GTest = 17.53 sec*proc (33 tests) IntegrationTest = 13.87 sec*proc (3 tests) MpiTest = 0.09 sec*proc (3 tests) UnitTest = 3.66 sec*proc (30 tests) Total Test time (real) = 17.59 sec /usr/bin/make -j4 -C build/basic-dp tests make[1]: Entering directory '/<>/build/basic-dp' /usr/bin/cmake -H/<> -B/<>/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests make[2]: Entering directory '/<>/build/basic-dp' /usr/bin/cmake -H/<> -B/<>/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles 96 /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/external/gmock-1.7.0 /<>/build/basic-dp /<>/build/basic-dp/src/external/gmock-1.7.0 /<>/build/basic-dp/src/external/gmock-1.7.0/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build [ 1%] Built target tng_io_obj Scanning dependencies of target gmock /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target mdrun_test_objlib /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/onlinehelp/tests /<>/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/mdrunutility/tests /<>/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= [ 1%] Built target mdrun_objlib /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/analysisdata/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/analysisdata/tests /<>/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp Scanning dependencies of target analysisdata-test-shared make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /<>/src/gromacs/analysisdata/tests/datatest.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/analysisdata/tests/datatest.h:46, from /<>/src/gromacs/analysisdata/tests/datatest.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&}; _Tp = gmx::test::AnalysisDataTestInputPointSet::Value; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&}; _Tp = gmx::test::AnalysisDataTestInputPointSet::Value; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘void gmx::test::AnalysisDataTestInputFrame::addPointSetWithValues(int, int, real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void gmx::test::AnalysisDataTestInputFrame::addPointSetWithValueAndError(int, int, real, real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void gmx::test::AnalysisDataTestInputFrame::addPointSetWithValues(int, int, real, real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void gmx::test::AnalysisDataTestInputFrame::addPointSetWithValues(int, int, real, real, real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::test::AnalysisDataTestInputFrame}; _Tp = gmx::test::AnalysisDataTestInputFrame; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘gmx::test::AnalysisDataTestInputFrame& gmx::test::AnalysisDataTestInput::addFrame(real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void gmx::test::AnalysisDataTestInput::addFrameWithValueAndError(real, real, real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void gmx::test::AnalysisDataTestInput::addFrameWithValues(real, real, real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void gmx::test::AnalysisDataTestInput::addFrameWithValues(real, real, real, real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void gmx::test::AnalysisDataTestInput::addFrameWithValues(real, real)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /<>/src/gromacs/analysisdata/tests/mock_datamodule.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target mdrunutility-test-shared /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target onlinehelp-test-shared cd /<>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' [ 78%] Built target libgromacs make[4]: Leaving directory '/<>/build/basic-dp' [ 78%] Built target analysisdata-test-shared cd /<>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/basic-dp' [ 78%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/basic-dp /<>/build/basic-dp/src/testutils /<>/build/basic-dp/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/basic-dp/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/basic-dp' [ 80%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/mdlib/tests /<>/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/basic-dp /<>/build/basic-dp/src/testutils/tests /<>/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/basic-dp /<>/build/basic-dp/src/testutils/tests /<>/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target mdrun-mpi-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /<>/src/programs/mdrun/tests/multisim.cpp Scanning dependencies of target mdlib-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build Scanning dependencies of target testutils-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.3.2.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 80%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/applied-forces/tests /<>/build/basic-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /<>/src/programs/mdrun/tests/multisimtest.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /<>/src/programs/mdrun/tests/replicaexchange.cpp cd /<>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/mdlib/tests/settle.cpp:38: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/mdlib/tests/settle.cpp:38: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::test::SettleTest_SatisfiesConstraints_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/mdlib/tests/settle.cpp:38: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/build/basic-dp' [ 81%] Built target applied-forces-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/listed-forces/tests /<>/build/basic-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /<>/src/programs/mdrun/tests/domain_decomposition.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 81%] Built target mdrun-mpi-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/commandline/tests /<>/build/basic-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic-dp' [ 81%] Built target listed-forces-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/ewald/tests /<>/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.3.2.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 82%] Built target testutils-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/fft/tests /<>/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 83%] Built target mdlib-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/gpu_utils/tests /<>/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp cd /<>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /<>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 84%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/hardware/tests /<>/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-port.h:653, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-linked_ptr.h:74, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-port.h:45, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-generated-internal-utils.h:44, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-internal-utils.h:45, from /<>/src/external/gmock-1.7.0/include/gmock/gmock-actions.h:46, from /<>/src/external/gmock-1.7.0/include/gmock/gmock.h:58, from /<>/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_vector.h:383:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 vector(initializer_list __l, ^~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-port.h:653, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-linked_ptr.h:74, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-port.h:45, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-generated-internal-utils.h:44, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-internal-utils.h:45, from /<>/src/external/gmock-1.7.0/include/gmock/gmock-actions.h:46, from /<>/src/external/gmock-1.7.0/include/gmock/gmock.h:58, from /<>/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-port.h:653, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-linked_ptr.h:74, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-port.h:45, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-generated-internal-utils.h:44, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-internal-utils.h:45, from /<>/src/external/gmock-1.7.0/include/gmock/gmock-actions.h:46, from /<>/src/external/gmock-1.7.0/include/gmock/gmock.h:58, from /<>/src/gromacs/ewald/tests/pmegathertest.cpp:47: /usr/include/c++/7/bits/stl_vector.h: In static member function ‘static void gmx::test::{anonymous}::PmeGatherTest::SetUpTestCase()’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/tests/pmegathertest.cpp: In function ‘void __static_initialization_and_destruction_0(int, int)’: /<>/src/gromacs/ewald/tests/pmegathertest.cpp:97:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }; ^ /<>/src/gromacs/ewald/tests/pmegathertest.cpp:165:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }; ^ /<>/src/gromacs/ewald/tests/pmegathertest.cpp:174:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }; ^ cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /<>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 84%] Built target hardware-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/math/tests /<>/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 85%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/mdrunutility/tests /<>/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp In file included from /usr/include/c++/7/map:61:0, from /<>/src/external/gmock-1.7.0/include/gmock/gmock-spec-builders.h:63, from /<>/src/external/gmock-1.7.0/include/gmock/gmock-generated-function-mockers.h:43, from /<>/src/external/gmock-1.7.0/include/gmock/gmock.h:61, from /<>/src/gromacs/ewald/tests/pmesolvetest.cpp:47: /usr/include/c++/7/bits/stl_map.h: In constructor ‘std::map<_Key, _Tp, _Compare, _Alloc>::map(std::initializer_list >, const _Compare&, const allocator_type&) [with _Key = gmx::BasicVector; _Tp = t_complex; _Compare = std::less >; _Alloc = std::allocator, t_complex> >]’: /usr/include/c++/7/bits/stl_map.h:220:7: note: parameter passing for argument of type ‘std::initializer_list, t_complex> >’ changed in GCC 7.1 map(initializer_list __l, ^~~ /<>/src/gromacs/ewald/tests/pmesolvetest.cpp: In function ‘void __static_initialization_and_destruction_0(int, int)’: /<>/src/gromacs/ewald/tests/pmesolvetest.cpp:348:1: note: parameter passing for argument of type ‘std::initializer_list, t_complex> >’ changed in GCC 7.1 }; ^ /<>/src/gromacs/ewald/tests/pmesolvetest.cpp:348:1: note: parameter passing for argument of type ‘std::initializer_list, t_complex> >’ changed in GCC 7.1 cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 85%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/mdrunutility/tests /<>/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-port.h:653, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/internal/gtest-linked_ptr.h:74, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-port.h:45, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-generated-internal-utils.h:44, from /<>/src/external/gmock-1.7.0/include/gmock/internal/gmock-internal-utils.h:45, from /<>/src/external/gmock-1.7.0/include/gmock/gmock-actions.h:46, from /<>/src/external/gmock-1.7.0/include/gmock/gmock.h:58, from /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:47: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; = void; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/stl_vector.h:411:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 vector(_InputIterator __first, _InputIterator __last, ^~~~~~ /usr/include/c++/7/bits/stl_vector.h:411:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_vector.h:411:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp: In function ‘void __static_initialization_and_destruction_0(int, int)’: /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:332:121: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 static CoordinatesVector const c_sampleCoordinates1(c_sampleCoordinatesFull.begin(), c_sampleCoordinatesFull.begin() + 1); ^ /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:334:125: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 static CoordinatesVector const c_sampleCoordinates2(c_sampleCoordinatesFull.begin() + 1, c_sampleCoordinatesFull.begin() + 3); ^ /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp:336:127: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 static CoordinatesVector const c_sampleCoordinates13(c_sampleCoordinatesFull.begin() + 3, c_sampleCoordinatesFull.begin() + 16); ^ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/math/tests/vectypes.cpp:50: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int, int, int}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::RVecTest_CanBeStoredInVector_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::RVecTest_ConvertsImplicitlyTo_rvec_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::RVecTest_WorksAsMutable_rvec_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::RVecTest_WorksAs_rvec_Array_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double (&)[3]}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::RVecTest_ConvertsImplicitlyFrom_rvec_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 85%] Built target math-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/onlinehelp/tests /<>/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 86%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/options/tests /<>/build/basic-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 86%] Built target ewald-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/random/tests /<>/build/basic-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic-dp' [ 87%] Built target commandline-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/tables/tests /<>/build/basic-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 88%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/taskassignment/tests /<>/build/basic-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/random/tests/exponentialdistribution.cpp:45: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::ExponentialDistributionTest_Output_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, ^~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, ^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/random/tests/gammadistribution.cpp:45: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::GammaDistributionTest_Output_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp cd /<>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 88%] Built target taskassignment-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/utility/tests /<>/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/random/tests/normaldistribution.cpp:45: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::NormalDistributionTest_Output_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp cd /<>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 89%] Built target table-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/fileio/tests /<>/build/basic-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/fileio/tests/confio.cpp:48: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {int, int, int}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘testing::Test* testing::internal::ParameterizedTestFactory::CreateTest() [with TestClass = {anonymous}::StructureIORoundtripTest_ReadWriteTpsConf_Test]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/random/tabulatednormaldistribution.h:52, from /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 89%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/pulling/tests /<>/build/basic-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp In file included from /usr/include/c++/7/vector:64:0, from /usr/include/c++/7/bits/random.h:34, from /usr/include/c++/7/random:49, from /<>/src/gromacs/random/seed.h:51, from /<>/src/gromacs/random/threefry.h:51, from /<>/src/gromacs/random/tests/threefry.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_vector.h:383:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 vector(initializer_list __l, ^~~~~~ cd /<>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp /<>/src/gromacs/random/tests/threefry.cpp: In function ‘(static initializers for /<>/src/gromacs/random/tests/threefry.cpp)’: /<>/src/gromacs/random/tests/threefry.cpp:119:44: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ /<>/src/gromacs/random/tests/threefry.cpp:131:43: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ /<>/src/gromacs/random/tests/threefry.cpp:142:42: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp cd /<>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 89%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/awh/tests /<>/build/basic-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘testing::Test* testing::internal::ParameterizedTestFactory::CreateTest() [with TestClass = gmx::test::BiasTest_ForcesBiasPmf_Test]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::test::BiasTest_DetectsCovering_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/random/tests/uniformrealdistribution.cpp:45: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::UniformRealDistributionTest_Output_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 90%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/simd/tests /<>/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/biasstate.h:57, from /<>/src/gromacs/awh/tests/biasstate.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::test::BiasStateTest::BiasStateTest()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/dimparams.h:52, from /<>/src/gromacs/awh/grid.h:60, from /<>/src/gromacs/awh/tests/grid.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::test::gridTest_neighborhood_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 90%] Built target awh-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gmxana/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/gmxana/tests /<>/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxana-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /<>/src/gromacs/gmxana/tests/gmx_traj.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp cd /<>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /<>/src/gromacs/gmxana/tests/gmx_trjconv.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 91%] Built target options-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gmxpreprocess/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxpreprocess-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/genconf.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/readir.cpp cd /<>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 91%] Built target gmxana-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/correlationfunctions/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/correlationfunctions/tests /<>/build/basic-dp/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Scanning dependencies of target correlations-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/autocorr.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/solvate.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/correlationfunctions/tests/autocorr.cpp:51: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacP0_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacP4_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacNormal_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacNoNormalize_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacP3_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacP1_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacP2_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacCos_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacVector_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::AutocorrTest_EacRcross_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/correlationdataset.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/expfit.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 91%] Built target gmxpreprocess-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/analysisdata/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/analysisdata/tests /<>/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /<>/src/gromacs/analysisdata/tests/analysisdata.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/correlationfunctions/tests/expfit.cpp:49: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In static member function ‘static void gmx::{anonymous}::ExpfitTest::SetUpTestCase()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 92%] Built target correlations-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/selection/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/selection/tests /<>/build/basic-dp/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= Scanning dependencies of target selection-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /<>/src/gromacs/selection/tests/indexutil.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /<>/src/gromacs/selection/tests/nbsearch.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const {anonymous}::NeighborhoodSearchTestData::RefPair&}; _Tp = {anonymous}::NeighborhoodSearchTestData::RefPair; _Alloc = std::allocator<{anonymous}::NeighborhoodSearchTestData::RefPair>]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair>::iterator {aka __gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/stl_vector.h: In function ‘void {anonymous}::NeighborhoodSearchTestData::computeReferencesInternal(t_pbc*, bool)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /<>/src/gromacs/analysisdata/tests/arraydata.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double (&)[3]}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘gmx::AnalysisNeighborhoodPositions {anonymous}::NeighborhoodSearchTestData::testPositions() const’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp /usr/include/c++/7/bits/vector.tcc: In function ‘void {anonymous}::NeighborhoodSearchTest::testPairSearch(gmx::AnalysisNeighborhoodSearch*, const {anonymous}::NeighborhoodSearchTestData&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::BasicVector}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_SimpleSelfPairsSearch_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_HandlesNullPBC_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm /usr/include/c++/7/bits/vector.tcc: In function ‘void {anonymous}::NeighborhoodSearchTestData::generateRandomRefPositions(int)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/stl_vector.h: In static member function ‘static const {anonymous}::NeighborhoodSearchTestData& {anonymous}::RandomBoxFullPBCData::get()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_GridSelfPairsSearch_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_GridSearchXYBox_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_GridSearchTriclinic_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[4]: Leaving directory '/<>/build/basic-dp' [ 93%] Built target simd-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/trajectoryanalysis/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_GridSearch2DPBC_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/moduletest.cpp /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_SimpleSearchXY_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_HandlesConcurrentSearches_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /<>/src/gromacs/analysisdata/tests/average.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_HandlesSkippingPairs_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<{anonymous}::NeighborhoodSearchTestData::RefPair*, std::vector<{anonymous}::NeighborhoodSearchTestData::RefPair> >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/selection/nbsearch.h:52, from /<>/src/gromacs/selection/tests/nbsearch.cpp:49: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::NeighborhoodSearchTest_HandlesNoPBC_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /<>/src/gromacs/selection/tests/poscalc.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/clustsize.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /<>/src/gromacs/analysisdata/tests/histogram.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /<>/src/gromacs/selection/tests/selectioncollection.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /<>/src/gromacs/analysisdata/tests/lifetime.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/angle.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/freevolume.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 93%] Built target analysisdata-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/energyanalysis/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/energyanalysis/tests /<>/build/basic-dp/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target energyanalysis-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /<>/src/gromacs/energyanalysis/tests/legacyenergy.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /<>/src/gromacs/selection/tests/selectionoption.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/pairdist.cpp cd /<>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/rdf.cpp cd /<>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 93%] Built target energyanalysis-test cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/sasa.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/select.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/trajectory.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/unionfind.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double&, double&, double&}; _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_ComputesSinglePoint_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_ComputesTwoPoints_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_ComputesTwoPointsOfUnequalRadius_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_SurfacePoints12_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_SurfacePoints32_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_SurfacePoints42_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_SurfacePoints122_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_Computes100Points_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_Computes100PointsWithRectangularPBC_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void {anonymous}::SurfaceAreaTest_Computes100PointsWithTriclinicPBC_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/trajectoryanalysis/modules/surfacearea.h:41, from /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp:44: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /<>/src/gromacs/selection/tests/toputils.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/compat/tests /<>/build/basic-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 94%] Built target selection-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic-dp' [ 95%] Built target trajectoryanalysis-test cd /<>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp Scanning dependencies of target mdrun-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /<>/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /<>/src/programs/mdrun/tests/grompp.cpp cd /<>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 95%] Built target compat-test cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /<>/src/programs/mdrun/tests/initialconstraints.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/rerun.cpp.o -c /<>/src/programs/mdrun/tests/rerun.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 97%] Built target utility-test cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /<>/src/programs/mdrun/tests/trajectory_writing.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o -c /<>/src/programs/mdrun/tests/trajectoryreader.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /<>/src/programs/mdrun/tests/compressed_x_output.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /<>/src/programs/mdrun/tests/swapcoords.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /<>/src/programs/mdrun/tests/interactiveMD.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /<>/src/programs/mdrun/tests/termination.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /<>/src/programs/mdrun/tests/pmetest.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/basic-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/rerun.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.2.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [100%] Built target mdrun-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/basic-dp /<>/build/basic-dp /<>/build/basic-dp/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' [100%] Built target tests make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles 0 make[2]: Leaving directory '/<>/build/basic-dp' make[1]: Leaving directory '/<>/build/basic-dp' (cd build/basic-dp; LD_LIBRARY_PATH=/<>/build/basic-dp/lib ctest -V) UpdateCTestConfiguration from :/<>/build/basic-dp/DartConfiguration.tcl Parse Config file:/<>/build/basic-dp/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/basic-dp/DartConfiguration.tcl Parse Config file:/<>/build/basic-dp/DartConfiguration.tcl Test project /<>/build/basic-dp Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/basic-dp/bin/testutils-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: [==========] Running 59 tests from 5 test cases. 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (7 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) 1: [----------] 34 tests from ReferenceDataTest (15 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues 1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero 1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) 1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance 1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) 1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) 1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 59 tests from 5 test cases ran. (25 ms total) 1: [ PASSED ] 59 tests. 1/33 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /<>/build/basic-dp/bin/testutils-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: [==========] Running 1 test from 1 test case. 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (1 ms) 2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. 2/33 Test #2: TestUtilsMpiUnitTests ............ Passed 0.01 sec test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/basic-dp/bin/mdlib-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: [==========] Running 40 tests from 6 test cases. 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses 3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) 3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) 3: [----------] 3 tests from PrintEbin (2 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond 3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) 3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks 3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) 3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace 3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) 3: [----------] 7 tests from SignalTest (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (1 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 40 tests from 6 test cases ran. (3 ms total) 3: [ PASSED ] 40 tests. 3/33 Test #3: MdlibUnitTest .................... Passed 0.02 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/basic-dp/bin/applied-forces-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: [==========] Running 3 tests from 1 test case. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (1 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (1 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. 4/33 Test #4: AppliedForcesUnitTest ............ Passed 0.01 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/basic-dp/bin/listed-forces-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: [==========] Running 15 tests from 1 test case. 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (1 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (1 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. 5/33 Test #5: ListedForcesTest ................. Passed 0.02 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/basic-dp/bin/commandline-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: [==========] Running 57 tests from 6 test cases. 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues 6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) 6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) 6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 6: 6: [----------] 23 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs 6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (1 ms) 6: [----------] 23 tests from ParseCommonArgsTest (5 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 57 tests from 6 test cases ran. (13 ms total) 6: [ PASSED ] 57 tests. 6/33 Test #6: CommandLineUnitTests ............. Passed 0.03 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/basic-dp/bin/ewald-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7: [==========] Running 257 tests from 10 test cases. 7: [----------] Global test environment set-up. 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 7: 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (6 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (9 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (6 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (7 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (6 ms) 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (133 ms total) 7: 7: [----------] 144 tests from SaneInput/PmeGatherTest 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) 7: [----------] 144 tests from SaneInput/PmeGatherTest (122 ms total) 7: 7: [----------] 16 tests from SaneInput/PmeSolveTest 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (5 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (5 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (5 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (5 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from SaneInput/PmeSolveTest (47 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (3 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (16 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (5 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (4 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (5 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (28 ms total) 7: 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (5 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (4 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (5 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (4 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (44 ms total) 7: 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (32 ms total) 7: 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (4 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (5 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (39 ms total) 7: 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (7 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (10 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (11 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (7 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (9 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (11 ms) 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (99 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 257 tests from 10 test cases ran. (574 ms total) 7: [ PASSED ] 257 tests. 7/33 Test #7: EwaldUnitTests ................... Passed 0.64 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/basic-dp/bin/fft-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8: [==========] Running 14 tests from 4 test cases. 8: [----------] Global test environment set-up. 8: [----------] 2 tests from ManyFFTTest 8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) 8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) 8: [----------] 2 tests from ManyFFTTest (17 ms total) 8: 8: [----------] 1 test from FFTTest 8: [ RUN ] FFTTest.Real2DLength18_15Test 8: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) 8: [----------] 1 test from FFTTest (3 ms total) 8: 8: [----------] 1 test from FFFTest3D 8: [ RUN ] FFFTest3D.Real5_6_9 8: [ OK ] FFFTest3D.Real5_6_9 (3 ms) 8: [----------] 1 test from FFFTest3D (3 ms total) 8: 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (6 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (9 ms) 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (23 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 14 tests from 4 test cases ran. (46 ms total) 8: [ PASSED ] 14 tests. 8/33 Test #8: FFTUnitTests ..................... Passed 0.06 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/basic-dp/bin/gpu_utils-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: [==========] Running 30 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (2 ms) 9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/0 (2 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = double 9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (3 ms) 9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/1 (4 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector 9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (2 ms) 9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/2 (2 ms total) 9: 9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (1 ms) 9: [----------] 3 tests from AllocatorTest/0 (1 ms total) 9: 9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/1 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/2 (0 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 30 tests from 6 test cases ran. (9 ms total) 9: [ PASSED ] 30 tests. 9/33 Test #9: GpuUtilsUnitTests ................ Passed 0.02 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/basic-dp/bin/hardware-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10: [==========] Running 4 tests from 1 test case. 10: [----------] Global test environment set-up. 10: [----------] 4 tests from HardwareTopologyTest 10: [ RUN ] HardwareTopologyTest.Execute 10: [ OK ] HardwareTopologyTest.Execute (8 ms) 10: [ RUN ] HardwareTopologyTest.HwlocExecute 10: [ OK ] HardwareTopologyTest.HwlocExecute (6 ms) 10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (6 ms) 10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency 10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (7 ms) 10: [----------] 4 tests from HardwareTopologyTest (29 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 4 tests from 1 test case ran. (29 ms total) 10: [ PASSED ] 4 tests. 10/33 Test #10: HardwareUnitTests ................ Passed 0.04 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/basic-dp/bin/math-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11: [==========] Running 31 tests from 4 test cases. 11: [----------] Global test environment set-up. 11: [----------] 21 tests from FunctionTest 11: [ RUN ] FunctionTest.StaticLog2 11: [ OK ] FunctionTest.StaticLog2 (0 ms) 11: [ RUN ] FunctionTest.Log2I32Bit 11: [ OK ] FunctionTest.Log2I32Bit (1 ms) 11: [ RUN ] FunctionTest.Log2I64Bit 11: [ OK ] FunctionTest.Log2I64Bit (0 ms) 11: [ RUN ] FunctionTest.GreatestCommonDivisor 11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 11: [ RUN ] FunctionTest.InvsqrtFloat 11: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvsqrtDouble 11: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvsqrtInteger 11: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 11: [ RUN ] FunctionTest.InvcbrtFloat 11: [ OK ] FunctionTest.InvcbrtFloat (1 ms) 11: [ RUN ] FunctionTest.InvcbrtDouble 11: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvcbrtInteger 11: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 11: [ RUN ] FunctionTest.SixthrootFloat 11: [ OK ] FunctionTest.SixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.SixthrootDouble 11: [ OK ] FunctionTest.SixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.SixthrootInteger 11: [ OK ] FunctionTest.SixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootFloat 11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootDouble 11: [ OK ] FunctionTest.InvsixthrootDouble (1 ms) 11: [ RUN ] FunctionTest.InvsixthrootInteger 11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.Powers 11: [ OK ] FunctionTest.Powers (0 ms) 11: [ RUN ] FunctionTest.ErfInvFloat 11: [ OK ] FunctionTest.ErfInvFloat (0 ms) 11: [ RUN ] FunctionTest.ErfInvDouble 11: [ OK ] FunctionTest.ErfInvDouble (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) 11: [----------] 21 tests from FunctionTest (4 ms total) 11: 11: [----------] 2 tests from InvertMatrixTest 11: [ RUN ] InvertMatrixTest.IdentityIsImpotent 11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertMatrixTest.ComputesInverse 11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) 11: [----------] 2 tests from InvertMatrixTest (0 ms total) 11: 11: [----------] 2 tests from InvertBoxMatrixTest 11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent 11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) 11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 11: 11: [----------] 6 tests from RVecTest 11: [ RUN ] RVecTest.CanBeStoredInVector 11: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAsMutable_rvec 11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Array 11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Reference 11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms) 11: [----------] 6 tests from RVecTest (0 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 31 tests from 4 test cases ran. (4 ms total) 11: [ PASSED ] 31 tests. 11/33 Test #11: MathUnitTests .................... Passed 0.02 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/basic-dp/bin/mdrunutility-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12: [==========] Running 17 tests from 1 test case. 12: [----------] Global test environment set-up. 12: [----------] 17 tests from ThreadAffinityTest 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled 12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 12: NOTE: Affinity setting failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 12: NOTE: Affinity setting for 1/2 threads failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) 12: [----------] 17 tests from ThreadAffinityTest (6 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 17 tests from 1 test case ran. (6 ms total) 12: [ PASSED ] 17 tests. 12/33 Test #12: MdrunUtilityUnitTests ............ Passed 0.02 sec test 13 Start 13: MdrunUtilityMpiUnitTests 13: Test command: /<>/build/basic-dp/bin/mdrunutility-mpi-test "-ntmpi" "4" "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 13: Test timeout computed to be: 30 13: [==========] Running 13 tests from 2 test cases. 13: [----------] Global test environment set-up. 13: [----------] 6 tests from ThreadAffinityMultiRankTest 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode 13: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (4 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride 13: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (9 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 13: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (2 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 13: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (2 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) 13: [----------] 6 tests from ThreadAffinityMultiRankTest (18 ms total) 13: 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (4 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (2 ms) 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (15 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 13 tests from 2 test cases ran. (33 ms total) 13: [ PASSED ] 13 tests. 13/33 Test #13: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec test 14 Start 14: OnlineHelpUnitTests 14: Test command: /<>/build/basic-dp/bin/onlinehelp-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/OnlineHelpUnitTests.xml" 14: Test timeout computed to be: 30 14: [==========] Running 22 tests from 4 test cases. 14: [----------] Global test environment set-up. 14: [----------] 6 tests from TextTableFormatterTest 14: [ RUN ] TextTableFormatterTest.HandlesBasicCase 14: [ OK ] TextTableFormatterTest.HandlesBasicCase (1 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesIndentation 14: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 14: [----------] 6 tests from TextTableFormatterTest (1 ms total) 14: 14: [----------] 3 tests from HelpManagerTest 14: [ RUN ] HelpManagerTest.HandlesRootTopic 14: [ OK ] HelpManagerTest.HandlesRootTopic (1 ms) 14: [ RUN ] HelpManagerTest.HandlesSubTopics 14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 14: [ RUN ] HelpManagerTest.HandlesInvalidTopics 14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) 14: [----------] 3 tests from HelpManagerTest (1 ms total) 14: 14: [----------] 2 tests from HelpTopicFormattingTest 14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) 14: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 14: 14: [----------] 11 tests from HelpWriterContextTest 14: [ RUN ] HelpWriterContextTest.FormatsParagraphs 14: [ OK ] HelpWriterContextTest.FormatsParagraphs (1 ms) 14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralText 14: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsBulletList 14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsGridTable 14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsTitles 14: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 14: [----------] 11 tests from HelpWriterContextTest (2 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 22 tests from 4 test cases ran. (4 ms total) 14: [ PASSED ] 22 tests. 14/33 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec test 15 Start 15: OptionsUnitTests 15: Test command: /<>/build/basic-dp/bin/options-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/OptionsUnitTests.xml" 15: Test timeout computed to be: 30 15: [==========] Running 110 tests from 18 test cases. 15: [----------] Global test environment set-up. 15: [----------] 5 tests from AbstractOptionStorageTest 15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 15: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 15: 15: [----------] 8 tests from FileNameOptionTest 15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 15: [----------] 8 tests from FileNameOptionTest (1 ms total) 15: 15: [----------] 15 tests from FileNameOptionManagerTest 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) 15: [----------] 15 tests from FileNameOptionManagerTest (0 ms total) 15: 15: [----------] 1 test from OptionsTest 15: [ RUN ] OptionsTest.FailsOnNonsafeStorage 15: [ OK ] OptionsTest.FailsOnNonsafeStorage (1 ms) 15: [----------] 1 test from OptionsTest (1 ms total) 15: 15: [----------] 9 tests from OptionsAssignerTest 15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter 15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMissingValue 15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesExtraValue 15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesGroups 15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesSections 15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 15: [----------] 9 tests from OptionsAssignerTest (0 ms total) 15: 15: [----------] 4 tests from OptionsAssignerBooleanTest 15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue 15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue 15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo 15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) 15: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) 15: 15: [----------] 13 tests from OptionsAssignerIntegerTest 15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet 15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues 15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) 15: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 15: 15: [----------] 5 tests from OptionsAssignerDoubleTest 15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue 15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) 15: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerStringTest 15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue 15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 15: 15: [----------] 6 tests from OptionsAssignerEnumTest 15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 15: 15: [----------] 8 tests from RepeatingOptionSectionTest 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (1 ms) 15: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 15: 15: [----------] 1 test from TimeUnitManagerTest 15: [ RUN ] TimeUnitManagerTest.BasicOperations 15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms) 15: [----------] 1 test from TimeUnitManagerTest (0 ms total) 15: 15: [----------] 4 tests from TimeUnitBehaviorTest 15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue 15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) 15: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 15: 15: [----------] 2 tests from TreeValueSupportAssignTest 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) 15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 15: 15: [----------] 1 test from TreeValueSupportAssignErrorTest 15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) 15: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 15: 15: [----------] 5 tests from TreeValueSupportCheckTest 15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 15: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 15: 15: [----------] 6 tests from TreeValueSupportAdjustTest 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (1 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 15: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 15: 15: [----------] 8 tests from TreeValueSupportTest 15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (1 ms) 15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsInt64Option 15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsStringOption 15: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsFloatOption 15: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (1 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumOption 15: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 15: [----------] 8 tests from TreeValueSupportTest (2 ms total) 15: 15: [----------] Global test environment tear-down 15: [==========] 110 tests from 18 test cases ran. (8 ms total) 15: [ PASSED ] 110 tests. 15/33 Test #15: OptionsUnitTests ................. Passed 0.03 sec test 16 Start 16: RandomUnitTests 16: Test command: /<>/build/basic-dp/bin/random-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/RandomUnitTests.xml" 16: Test timeout computed to be: 30 16: [==========] Running 44 tests from 10 test cases. 16: [----------] Global test environment set-up. 16: [----------] 4 tests from ExponentialDistributionTest 16: [ RUN ] ExponentialDistributionTest.Output 16: [ OK ] ExponentialDistributionTest.Output (0 ms) 16: [ RUN ] ExponentialDistributionTest.Logical 16: [ OK ] ExponentialDistributionTest.Logical (0 ms) 16: [ RUN ] ExponentialDistributionTest.Reset 16: [ OK ] ExponentialDistributionTest.Reset (0 ms) 16: [ RUN ] ExponentialDistributionTest.AltParam 16: [ OK ] ExponentialDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 16: 16: [----------] 4 tests from GammaDistributionTest 16: [ RUN ] GammaDistributionTest.Output 16: [ OK ] GammaDistributionTest.Output (0 ms) 16: [ RUN ] GammaDistributionTest.Logical 16: [ OK ] GammaDistributionTest.Logical (0 ms) 16: [ RUN ] GammaDistributionTest.Reset 16: [ OK ] GammaDistributionTest.Reset (0 ms) 16: [ RUN ] GammaDistributionTest.AltParam 16: [ OK ] GammaDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from GammaDistributionTest (0 ms total) 16: 16: [----------] 4 tests from NormalDistributionTest 16: [ RUN ] NormalDistributionTest.Output 16: [ OK ] NormalDistributionTest.Output (0 ms) 16: [ RUN ] NormalDistributionTest.Logical 16: [ OK ] NormalDistributionTest.Logical (0 ms) 16: [ RUN ] NormalDistributionTest.Reset 16: [ OK ] NormalDistributionTest.Reset (0 ms) 16: [ RUN ] NormalDistributionTest.AltParam 16: [ OK ] NormalDistributionTest.AltParam (1 ms) 16: [----------] 4 tests from NormalDistributionTest (1 ms total) 16: 16: [----------] 1 test from SeedTest 16: [ RUN ] SeedTest.makeRandomSeed 16: [ OK ] SeedTest.makeRandomSeed (0 ms) 16: [----------] 1 test from SeedTest (0 ms total) 16: 16: [----------] 6 tests from TabulatedNormalDistributionTest 16: [ RUN ] TabulatedNormalDistributionTest.Output14 16: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Output16 16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Logical 16: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Reset 16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.AltParam 16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) 16: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 16: 16: [----------] 1 test from TabulatedNormalDistributionTableTest 16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties 16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (4 ms) 16: [----------] 1 test from TabulatedNormalDistributionTableTest (4 ms total) 16: 16: [----------] 6 tests from ThreeFry2x64Test 16: [ RUN ] ThreeFry2x64Test.Logical 16: [ OK ] ThreeFry2x64Test.Logical (0 ms) 16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence 16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 16: [ RUN ] ThreeFry2x64Test.Reseed 16: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 16: [ RUN ] ThreeFry2x64Test.Discard 16: [ OK ] ThreeFry2x64Test.Discard (0 ms) 16: [ RUN ] ThreeFry2x64Test.InvalidCounter 16: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 16: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 16: 16: [----------] 4 tests from UniformIntDistributionTest 16: [ RUN ] UniformIntDistributionTest.Output 16: [ OK ] UniformIntDistributionTest.Output (0 ms) 16: [ RUN ] UniformIntDistributionTest.Logical 16: [ OK ] UniformIntDistributionTest.Logical (0 ms) 16: [ RUN ] UniformIntDistributionTest.Reset 16: [ OK ] UniformIntDistributionTest.Reset (0 ms) 16: [ RUN ] UniformIntDistributionTest.AltParam 16: [ OK ] UniformIntDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 16: 16: [----------] 5 tests from UniformRealDistributionTest 16: [ RUN ] UniformRealDistributionTest.GenerateCanonical 16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Output 16: [ OK ] UniformRealDistributionTest.Output (0 ms) 16: [ RUN ] UniformRealDistributionTest.Logical 16: [ OK ] UniformRealDistributionTest.Logical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Reset 16: [ OK ] UniformRealDistributionTest.Reset (0 ms) 16: [ RUN ] UniformRealDistributionTest.AltParam 16: [ OK ] UniformRealDistributionTest.AltParam (0 ms) 16: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 16: 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 44 tests from 10 test cases ran. (9 ms total) 16: [ PASSED ] 44 tests. 16/33 Test #16: RandomUnitTests .................. Passed 0.04 sec test 17 Start 17: TableUnitTests 17: Test command: /<>/build/basic-dp/bin/table-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TableUnitTests.xml" 17: Test timeout computed to be: 30 17: [==========] Running 16 tests from 2 test cases. 17: [----------] Global test environment set-up. 17: [----------] 8 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (6 ms) 17: [ RUN ] SplineTableTest/0.Sinc 17: [ OK ] SplineTableTest/0.Sinc (2 ms) 17: [ RUN ] SplineTableTest/0.LJ12 17: [ OK ] SplineTableTest/0.LJ12 (54 ms) 17: [ RUN ] SplineTableTest/0.PmeCorrection 17: [ OK ] SplineTableTest/0.PmeCorrection (4 ms) 17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/0.TwoFunctions 17: [ OK ] SplineTableTest/0.TwoFunctions (110 ms) 17: [ RUN ] SplineTableTest/0.ThreeFunctions 17: [ OK ] SplineTableTest/0.ThreeFunctions (118 ms) 17: [----------] 8 tests from SplineTableTest/0 (299 ms total) 17: 17: [----------] 8 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (5 ms) 17: [ RUN ] SplineTableTest/1.Sinc 17: [ OK ] SplineTableTest/1.Sinc (5 ms) 17: [ RUN ] SplineTableTest/1.LJ12 17: [ OK ] SplineTableTest/1.LJ12 (132 ms) 17: [ RUN ] SplineTableTest/1.PmeCorrection 17: [ OK ] SplineTableTest/1.PmeCorrection (4 ms) 17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/1.TwoFunctions 17: [ OK ] SplineTableTest/1.TwoFunctions (268 ms) 17: [ RUN ] SplineTableTest/1.ThreeFunctions 17: [ OK ] SplineTableTest/1.ThreeFunctions (293 ms) 17: [----------] 8 tests from SplineTableTest/1 (710 ms total) 17: 17: [----------] Global test environment tear-down 17: [==========] 16 tests from 2 test cases ran. (1009 ms total) 17: [ PASSED ] 16 tests. 17/33 Test #17: TableUnitTests ................... Passed 1.03 sec test 18 Start 18: TaskAssignmentUnitTests 18: Test command: /<>/build/basic-dp/bin/taskassignment-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TaskAssignmentUnitTests.xml" 18: Test timeout computed to be: 30 18: [==========] Running 3 tests from 1 test case. 18: [----------] Global test environment set-up. 18: [----------] 3 tests from GpuIdStringHandlingTest 18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork 18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) 18: [----------] 3 tests from GpuIdStringHandlingTest (0 ms total) 18: 18: [----------] Global test environment tear-down 18: [==========] 3 tests from 1 test case ran. (0 ms total) 18: [ PASSED ] 3 tests. 18/33 Test #18: TaskAssignmentUnitTests .......... Passed 0.01 sec test 19 Start 19: UtilityUnitTests 19: Test command: /<>/build/basic-dp/bin/utility-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/UtilityUnitTests.xml" 19: Test timeout computed to be: 30 19: [==========] Running 307 tests from 49 test cases. 19: [----------] Global test environment set-up. 19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/0 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/1 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/2 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/3 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/4 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/5 (1 ms total) 19: 19: [----------] 1 test from EmptyArrayRefTest 19: [ RUN ] EmptyArrayRefTest.IsEmpty 19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyArrayRefTest (0 ms total) 19: 19: [----------] 1 test from EmptyConstArrayRefTest 19: [ RUN ] EmptyConstArrayRefTest.IsEmpty 19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/0 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/3 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/4 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/8 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/9 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/10 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/12 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/16 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/17 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/19 (0 ms total) 19: 19: [----------] 4 tests from KeyValueTreeSerializerTest 19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (1 ms) 19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 19: 19: [----------] 6 tests from TreeValueTransformTest 19: [ RUN ] TreeValueTransformTest.SimpleTransforms 19: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromString 19: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 19: [ RUN ] TreeValueTransformTest.ScopedTransformRules 19: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 19: [----------] 6 tests from TreeValueTransformTest (1 ms total) 19: 19: [----------] 1 test from TreeValueTransformErrorTest 19: [ RUN ] TreeValueTransformErrorTest.ConversionError 19: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) 19: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) 19: 19: [----------] 5 tests from LoggerTest 19: [ RUN ] LoggerTest.EmptyLoggerWorks 19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToStream 19: [ OK ] LoggerTest.LogsToStream (0 ms) 19: [ RUN ] LoggerTest.LogsToFile 19: [ OK ] LoggerTest.LogsToFile (0 ms) 19: [ RUN ] LoggerTest.LevelFilteringWorks 19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToMultipleStreams 19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 19: [----------] 5 tests from LoggerTest (1 ms total) 19: 19: [----------] 4 tests from MutexBasicTest 19: [ RUN ] MutexBasicTest.CanBeMade 19: [ OK ] MutexBasicTest.CanBeMade (0 ms) 19: [ RUN ] MutexBasicTest.CanBeLocked 19: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeTryLocked 19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) 19: [----------] 4 tests from MutexBasicTest (0 ms total) 19: 19: [----------] 3 tests from MutexTaskTest 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) 19: [----------] 3 tests from MutexTaskTest (1 ms total) 19: 19: [----------] 2 tests from PathTest 19: [ RUN ] PathTest.StripSourcePrefixWorks 19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks 19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms) 19: [----------] 2 tests from PathTest (0 ms total) 19: 19: [----------] 7 tests from StringUtilityTest 19: [ RUN ] StringUtilityTest.StartsWith 19: [ OK ] StringUtilityTest.StartsWith (0 ms) 19: [ RUN ] StringUtilityTest.EndsWith 19: [ OK ] StringUtilityTest.EndsWith (0 ms) 19: [ RUN ] StringUtilityTest.StripSuffixIfPresent 19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms) 19: [ RUN ] StringUtilityTest.StripString 19: [ OK ] StringUtilityTest.StripString (0 ms) 19: [ RUN ] StringUtilityTest.SplitString 19: [ OK ] StringUtilityTest.SplitString (0 ms) 19: [ RUN ] StringUtilityTest.SplitDelimitedString 19: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) 19: [----------] 7 tests from StringUtilityTest (1 ms total) 19: 19: [----------] 2 tests from FormatStringTest 19: [ RUN ] FormatStringTest.HandlesBasicFormatting 19: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 19: [ RUN ] FormatStringTest.HandlesLongStrings 19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) 19: [----------] 2 tests from FormatStringTest (0 ms total) 19: 19: [----------] 1 test from StringFormatterTest 19: [ RUN ] StringFormatterTest.HandlesBasicFormatting 19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms) 19: [----------] 1 test from StringFormatterTest (0 ms total) 19: 19: [----------] 1 test from formatAndJoinTest 19: [ RUN ] formatAndJoinTest.Works 19: [ OK ] formatAndJoinTest.Works (0 ms) 19: [----------] 1 test from formatAndJoinTest (0 ms total) 19: 19: [----------] 1 test from JoinStringsTest 19: [ RUN ] JoinStringsTest.Works 19: [ OK ] JoinStringsTest.Works (0 ms) 19: [----------] 1 test from JoinStringsTest (0 ms total) 19: 19: [----------] 6 tests from ReplaceAllTest 19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesNoMatches 19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds 19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries 19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) 19: [----------] 6 tests from ReplaceAllTest (0 ms total) 19: 19: [----------] 10 tests from TextLineWrapperTest 19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectly 19: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (1 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndent 19: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 19: [----------] 10 tests from TextLineWrapperTest (1 ms total) 19: 19: [----------] 6 tests from TextWriterTest 19: [ RUN ] TextWriterTest.WritesLines 19: [ OK ] TextWriterTest.WritesLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInParts 19: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 19: [ RUN ] TextWriterTest.WritesWrappedLines 19: [ OK ] TextWriterTest.WritesWrappedLines (1 ms) 19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 19: [ RUN ] TextWriterTest.TracksNewlines 19: [ OK ] TextWriterTest.TracksNewlines (0 ms) 19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) 19: [----------] 6 tests from TextWriterTest (1 ms total) 19: 19: [----------] 1 test from TypeTraitsTest 19: [ RUN ] TypeTraitsTest.IsIntegralConstant 19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) 19: [----------] 1 test from TypeTraitsTest (0 ms total) 19: 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 19: 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 19: 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (1 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 307 tests from 49 test cases ran. (15 ms total) 19: [ PASSED ] 307 tests. 19/33 Test #19: UtilityUnitTests ................. Passed 0.04 sec test 20 Start 20: FileIOTests 20: Test command: /<>/build/basic-dp/bin/fileio-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/FileIOTests.xml" 20: Test timeout computed to be: 30 20: [==========] Running 15 tests from 3 test cases. 20: [----------] Global test environment set-up. 20: [----------] 9 tests from ReadTest 20: [ RUN ] ReadTest.get_eint_ReadsInteger 20: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_eint64_ReadsInteger 20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsInteger 20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsFloat 20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms) 20: [ RUN ] ReadTest.get_ereal_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not a 20: real value 20: 20: 20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) 20: [----------] 9 tests from ReadTest (0 ms total) 20: 20: [----------] 2 tests from TngTest 20: [ RUN ] TngTest.CanOpenTngFile 20: [ OK ] TngTest.CanOpenTngFile (0 ms) 20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) 20: [----------] 2 tests from TngTest (0 ms total) 20: 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (7 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 15 tests from 3 test cases ran. (7 ms total) 20: [ PASSED ] 15 tests. 20/33 Test #20: FileIOTests ...................... Passed 0.02 sec test 21 Start 21: PullTest 21: Test command: /<>/build/basic-dp/bin/pull-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/PullTest.xml" 21: Test timeout computed to be: 30 21: [==========] Running 5 tests from 1 test case. 21: [----------] Global test environment set-up. 21: [----------] 5 tests from PullTest 21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox 21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox 21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox 21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) 21: [----------] 5 tests from PullTest (0 ms total) 21: 21: [----------] Global test environment tear-down 21: [==========] 5 tests from 1 test case ran. (0 ms total) 21: [ PASSED ] 5 tests. 21/33 Test #21: PullTest ......................... Passed 0.01 sec test 22 Start 22: AwhTest 22: Test command: /<>/build/basic-dp/bin/awh-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/AwhTest.xml" 22: Test timeout computed to be: 30 22: [==========] Running 12 tests from 4 test cases. 22: [----------] Global test environment set-up. 22: [----------] 1 test from BiasTest 22: [ RUN ] BiasTest.DetectsCovering 22: [ OK ] BiasTest.DetectsCovering (1 ms) 22: [----------] 1 test from BiasTest (1 ms total) 22: 22: [----------] 1 test from gridTest 22: [ RUN ] gridTest.neighborhood 22: [ OK ] gridTest.neighborhood (2 ms) 22: [----------] 1 test from gridTest (2 ms total) 22: 22: [----------] 8 tests from WithParameters/BiasTest 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) 22: [----------] 8 tests from WithParameters/BiasTest (6 ms total) 22: 22: [----------] 2 tests from WithParameters/BiasStateTest 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 22: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 22: 22: [----------] Global test environment tear-down 22: [==========] 12 tests from 4 test cases ran. (10 ms total) 22: [ PASSED ] 12 tests. 22/33 Test #22: AwhTest .......................... Passed 0.02 sec test 23 Start 23: SimdUnitTests 23: Test command: /<>/build/basic-dp/bin/simd-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/SimdUnitTests.xml" 23: Test timeout computed to be: 30 23: [==========] Running 86 tests from 3 test cases. 23: [----------] Global test environment set-up. 23: [----------] 41 tests from SimdScalarTest 23: [ RUN ] SimdScalarTest.load 23: [ OK ] SimdScalarTest.load (0 ms) 23: [ RUN ] SimdScalarTest.loadU 23: [ OK ] SimdScalarTest.loadU (0 ms) 23: [ RUN ] SimdScalarTest.store 23: [ OK ] SimdScalarTest.store (0 ms) 23: [ RUN ] SimdScalarTest.storeU 23: [ OK ] SimdScalarTest.storeU (0 ms) 23: [ RUN ] SimdScalarTest.setZero 23: [ OK ] SimdScalarTest.setZero (0 ms) 23: [ RUN ] SimdScalarTest.andNot 23: [ OK ] SimdScalarTest.andNot (0 ms) 23: [ RUN ] SimdScalarTest.fma 23: [ OK ] SimdScalarTest.fma (0 ms) 23: [ RUN ] SimdScalarTest.fms 23: [ OK ] SimdScalarTest.fms (0 ms) 23: [ RUN ] SimdScalarTest.fnma 23: [ OK ] SimdScalarTest.fnma (0 ms) 23: [ RUN ] SimdScalarTest.fnms 23: [ OK ] SimdScalarTest.fnms (0 ms) 23: [ RUN ] SimdScalarTest.maskAdd 23: [ OK ] SimdScalarTest.maskAdd (0 ms) 23: [ RUN ] SimdScalarTest.maskzMul 23: [ OK ] SimdScalarTest.maskzMul (0 ms) 23: [ RUN ] SimdScalarTest.maskzFma 23: [ OK ] SimdScalarTest.maskzFma (0 ms) 23: [ RUN ] SimdScalarTest.abs 23: [ OK ] SimdScalarTest.abs (0 ms) 23: [ RUN ] SimdScalarTest.max 23: [ OK ] SimdScalarTest.max (0 ms) 23: [ RUN ] SimdScalarTest.min 23: [ OK ] SimdScalarTest.min (0 ms) 23: [ RUN ] SimdScalarTest.round 23: [ OK ] SimdScalarTest.round (0 ms) 23: [ RUN ] SimdScalarTest.trunc 23: [ OK ] SimdScalarTest.trunc (0 ms) 23: [ RUN ] SimdScalarTest.reduce 23: [ OK ] SimdScalarTest.reduce (0 ms) 23: [ RUN ] SimdScalarTest.testBits 23: [ OK ] SimdScalarTest.testBits (0 ms) 23: [ RUN ] SimdScalarTest.anyTrue 23: [ OK ] SimdScalarTest.anyTrue (0 ms) 23: [ RUN ] SimdScalarTest.selectByMask 23: [ OK ] SimdScalarTest.selectByMask (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMask 23: [ OK ] SimdScalarTest.selectByNotMask (0 ms) 23: [ RUN ] SimdScalarTest.blend 23: [ OK ] SimdScalarTest.blend (0 ms) 23: [ RUN ] SimdScalarTest.cvtR2I 23: [ OK ] SimdScalarTest.cvtR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvttR2I 23: [ OK ] SimdScalarTest.cvttR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvtI2R 23: [ OK ] SimdScalarTest.cvtI2R (0 ms) 23: [ RUN ] SimdScalarTest.cvtF2D 23: [ OK ] SimdScalarTest.cvtF2D (0 ms) 23: [ RUN ] SimdScalarTest.cvtD2D 23: [ OK ] SimdScalarTest.cvtD2D (0 ms) 23: [ RUN ] SimdScalarTest.loadI 23: [ OK ] SimdScalarTest.loadI (0 ms) 23: [ RUN ] SimdScalarTest.loadUI 23: [ OK ] SimdScalarTest.loadUI (0 ms) 23: [ RUN ] SimdScalarTest.storeI 23: [ OK ] SimdScalarTest.storeI (0 ms) 23: [ RUN ] SimdScalarTest.storeUI 23: [ OK ] SimdScalarTest.storeUI (0 ms) 23: [ RUN ] SimdScalarTest.andNotI 23: [ OK ] SimdScalarTest.andNotI (0 ms) 23: [ RUN ] SimdScalarTest.testBitsI 23: [ OK ] SimdScalarTest.testBitsI (0 ms) 23: [ RUN ] SimdScalarTest.selectByMaskI 23: [ OK ] SimdScalarTest.selectByMaskI (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMaskI 23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms) 23: [ RUN ] SimdScalarTest.blendI 23: [ OK ] SimdScalarTest.blendI (0 ms) 23: [ RUN ] SimdScalarTest.cvtB2IB 23: [ OK ] SimdScalarTest.cvtB2IB (0 ms) 23: [ RUN ] SimdScalarTest.cvtIB2B 23: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 23: [ RUN ] SimdScalarTest.expandScalarsToTriplets 23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) 23: [----------] 41 tests from SimdScalarTest (0 ms total) 23: 23: [----------] 8 tests from SimdScalarUtilTest 23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU 23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU 23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU 23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) 23: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 23: 23: [----------] 37 tests from SimdScalarMathTest 23: [ RUN ] SimdScalarMathTest.copysign 23: [ OK ] SimdScalarMathTest.copysign (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPair 23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms) 23: [ RUN ] SimdScalarMathTest.inv 23: [ OK ] SimdScalarMathTest.inv (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrt 23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdScalarMathTest.log 23: [ OK ] SimdScalarMathTest.log (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2 23: [ OK ] SimdScalarMathTest.exp2 (0 ms) 23: [ RUN ] SimdScalarMathTest.exp 23: [ OK ] SimdScalarMathTest.exp (0 ms) 23: [ RUN ] SimdScalarMathTest.erf 23: [ OK ] SimdScalarMathTest.erf (0 ms) 23: [ RUN ] SimdScalarMathTest.erfc 23: [ OK ] SimdScalarMathTest.erfc (0 ms) 23: [ RUN ] SimdScalarMathTest.sincos 23: [ OK ] SimdScalarMathTest.sincos (0 ms) 23: [ RUN ] SimdScalarMathTest.sin 23: [ OK ] SimdScalarMathTest.sin (0 ms) 23: [ RUN ] SimdScalarMathTest.cos 23: [ OK ] SimdScalarMathTest.cos (0 ms) 23: [ RUN ] SimdScalarMathTest.tan 23: [ OK ] SimdScalarMathTest.tan (0 ms) 23: [ RUN ] SimdScalarMathTest.asin 23: [ OK ] SimdScalarMathTest.asin (0 ms) 23: [ RUN ] SimdScalarMathTest.acos 23: [ OK ] SimdScalarMathTest.acos (0 ms) 23: [ RUN ] SimdScalarMathTest.atan 23: [ OK ] SimdScalarMathTest.atan (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2 23: [ OK ] SimdScalarMathTest.atan2 (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrection 23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection 23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.invSingleAccuracy 23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy 23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.logSingleAccuracy 23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy 23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.expSingleAccuracy 23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy 23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy 23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy 23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy 23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy 23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy 23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy 23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy 23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) 23: [----------] 37 tests from SimdScalarMathTest (1 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 86 tests from 3 test cases ran. (2 ms total) 23: [ PASSED ] 86 tests. 23/33 Test #23: SimdUnitTests .................... Passed 0.02 sec test 24 Start 24: GmxAnaTest 24: Test command: /<>/build/basic-dp/bin/gmxana-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/GmxAnaTest.xml" 24: Test timeout computed to be: 600 24: [==========] Running 12 tests from 2 test cases. 24: [----------] Global test environment set-up. 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: trr version: GMX_trn_file (single precision) 24: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (4 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (2 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (3 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (18 ms total) 24: 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (7 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.tng is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (6 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (5 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.gro is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (6 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.pdb is 0.0001 (nm) 24: -> frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (6 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (6 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (36 ms total) 24: 24: [----------] Global test environment tear-down 24: [==========] 12 tests from 2 test cases ran. (54 ms total) 24: [ PASSED ] 12 tests. 24/33 Test #24: GmxAnaTest ....................... Passed 0.07 sec test 25 Start 25: GmxPreprocessTests 25: Test command: /<>/build/basic-dp/bin/gmxpreprocess-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/GmxPreprocessTests.xml" 25: Test timeout computed to be: 30 25: [==========] Running 21 tests from 4 test cases. 25: [----------] Global test environment set-up. 25: [----------] 4 tests from GenconfTest 25: [ RUN ] GenconfTest.nbox_Works 25: [ OK ] GenconfTest.nbox_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_norenumber_Works 25: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_dist_Works 25: [ OK ] GenconfTest.nbox_dist_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_rot_Works 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: [ OK ] GenconfTest.nbox_rot_Works (1 ms) 25: [----------] 4 tests from GenconfTest (4 ms total) 25: 25: [----------] 5 tests from InsertMoleculesTest 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading molecule configuration 25: test two-residue molecule for insertion 25: Containing 2 atoms in 2 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 8 atoms)! 25: 25: Added 1 molecules (out of 1 requested) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 25: 25: Output configuration contains 8 atoms in 4 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (4 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 25: Reading molecule configuration 25: test two-residue molecule for insertion 25: Containing 2 atoms in 2 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 2 atoms)! 25: Try 2 success (now 4 atoms)! 25: Try 3 success (now 6 atoms)! 25: Try 4 success (now 8 atoms)! 25: Try 5 success (now 10 atoms)! 25: 25: Added 5 molecules (out of 5 requested) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro 25: 25: Output configuration contains 10 atoms in 10 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading molecule configuration 25: test molecule for insertion 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 8 atoms)! 25: Try 2 success (now 10 atoms)! 25: 25: Added 2 molecules (out of 2 requested) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 25: 25: Output configuration contains 10 atoms in 4 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 25: Reading solute configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: Reading molecule configuration 25: test molecule for insertion 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 650 atoms)! 25: Try 2 success (now 652 atoms)! 25: Try 3 success (now 654 atoms)! 25: Try 4 success (now 656 atoms)! 25: 25: Added 4 molecules (out of 4 requested) 25: Replaced 8 residues (24 atoms) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 25: 25: Output configuration contains 632 atoms in 212 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (15 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 25: Reading molecule configuration 25: test molecule for insertion at origin 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Read 4 positions from file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_5.dat 25: 25: Try 1 success (now 2 atoms)! 25: Try 2 success (now 4 atoms)! 25: Try 3 Try 4 Try 5 Try 6 Try 7 Try 8 Try 9 Try 10 Try 11 Try 12 skipped position (0.990, 2.010, 3.000) 25: Try 13 success (now 6 atoms)! 25: 25: Added 3 molecules (out of 4 requested) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 25: 25: Output configuration contains 6 atoms in 3 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (3 ms) 25: [----------] 5 tests from InsertMoleculesTest (28 ms total) 25: 25: [----------] 8 tests from GetIrTest 25: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp, line 12]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: Ignoring obsolete mdp entry 'title' 25: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps' 25: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (6 ms) 25: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme 25: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (5 ms) 25: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (5 ms) 25: [ RUN ] GetIrTest.DefineHandlesAssignmentOnRhs 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp, line 2]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (5 ms) 25: [ RUN ] GetIrTest.EmptyInputWorks 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.EmptyInputWorks (5 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricField 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp, line 2]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricField (5 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (6 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (5 ms) 25: [----------] 8 tests from GetIrTest (42 ms total) 25: 25: [----------] 4 tests from SolvateTest 25: [ RUN ] SolvateTest.cs_box_Works 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 1x1x1 boxes 25: Solvent box contains 270 atoms in 90 residues 25: Removed 129 solvent atoms due to solvent-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 47 residues 25: Generated solvent containing 141 atoms in 47 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_box_Works_out.gro 25: 25: Output configuration contains 141 atoms in 47 residues 25: Volume : 1.331 (nm^3) 25: Density : 1056.36 (g/l) 25: Number of SOL molecules: 47 25: 25: [ OK ] SolvateTest.cs_box_Works (15 ms) 25: [ RUN ] SolvateTest.cs_cp_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 886 residues 25: Generated solvent containing 2658 atoms in 886 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_Works_out.gro 25: 25: Output configuration contains 2664 atoms in 888 residues 25: Volume : 27.2709 (nm^3) 25: Density : 974.776 (g/l) 25: Number of SOL molecules: 887 25: 25: [ OK ] SolvateTest.cs_cp_Works (66 ms) 25: [ RUN ] SolvateTest.cs_cp_p_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 886 residues 25: Generated solvent containing 2658 atoms in 886 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_out.gro 25: 25: Output configuration contains 2664 atoms in 888 residues 25: Volume : 27.2709 (nm^3) 25: Density : 974.776 (g/l) 25: Number of SOL molecules: 887 25: 25: Processing topology 25: Adding line for 886 solvent molecules to topology file (/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top) 25: [ OK ] SolvateTest.cs_cp_p_Works (67 ms) 25: [ RUN ] SolvateTest.shell_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 1902 solvent atoms more than 1.000000 nm from solute. 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 252 residues 25: Generated solvent containing 756 atoms in 252 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_shell_Works_out.gro 25: 25: Output configuration contains 762 atoms in 254 residues 25: Volume : 27.2709 (nm^3) 25: Density : 279.3 (g/l) 25: Number of SOL molecules: 253 25: 25: [ OK ] SolvateTest.shell_Works (38 ms) 25: [----------] 4 tests from SolvateTest (186 ms total) 25: 25: [----------] Global test environment tear-down 25: [==========] 21 tests from 4 test cases ran. (261 ms total) 25: [ PASSED ] 21 tests. 25/33 Test #25: GmxPreprocessTests ............... Passed 0.27 sec test 26 Start 26: CorrelationsTest 26: Test command: /<>/build/basic-dp/bin/correlations-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/CorrelationsTest.xml" 26: Test timeout computed to be: 30 26: [==========] Running 21 tests from 3 test cases. 26: [----------] Global test environment set-up. 26: [----------] 10 tests from AutocorrTest 26: [ RUN ] AutocorrTest.EacNormal 26: [ OK ] AutocorrTest.EacNormal (5 ms) 26: [ RUN ] AutocorrTest.EacNoNormalize 26: [ OK ] AutocorrTest.EacNoNormalize (3 ms) 26: [ RUN ] AutocorrTest.EacCos 26: [ OK ] AutocorrTest.EacCos (5 ms) 26: [ RUN ] AutocorrTest.EacVector 26: [ OK ] AutocorrTest.EacVector (7 ms) 26: [ RUN ] AutocorrTest.EacRcross 26: [ OK ] AutocorrTest.EacRcross (2 ms) 26: [ RUN ] AutocorrTest.EacP0 26: [ OK ] AutocorrTest.EacP0 (8 ms) 26: [ RUN ] AutocorrTest.EacP1 26: [ OK ] AutocorrTest.EacP1 (8 ms) 26: [ RUN ] AutocorrTest.EacP2 26: [ OK ] AutocorrTest.EacP2 (13 ms) 26: [ RUN ] AutocorrTest.EacP3 26: [ OK ] AutocorrTest.EacP3 (8 ms) 26: [ RUN ] AutocorrTest.EacP4 26: [ OK ] AutocorrTest.EacP4 (8 ms) 26: [----------] 10 tests from AutocorrTest (69 ms total) 26: 26: [----------] 1 test from ManyAutocorrelationTest 26: [ RUN ] ManyAutocorrelationTest.Empty 26: [ OK ] ManyAutocorrelationTest.Empty (0 ms) 26: [----------] 1 test from ManyAutocorrelationTest (0 ms total) 26: 26: [----------] 10 tests from ExpfitTest 26: [ RUN ] ExpfitTest.EffnEXP1 26: [ OK ] ExpfitTest.EffnEXP1 (2 ms) 26: [ RUN ] ExpfitTest.EffnEXP2 26: [ OK ] ExpfitTest.EffnEXP2 (3 ms) 26: [ RUN ] ExpfitTest.EffnEXPEXP 26: [ OK ] ExpfitTest.EffnEXPEXP (5 ms) 26: [ RUN ] ExpfitTest.EffnEXP5 26: [ OK ] ExpfitTest.EffnEXP5 (18 ms) 26: [ RUN ] ExpfitTest.EffnEXP7 26: [ OK ] ExpfitTest.EffnEXP7 (15 ms) 26: [ RUN ] ExpfitTest.EffnEXP9 26: [ OK ] ExpfitTest.EffnEXP9 (100 ms) 26: [ RUN ] ExpfitTest.EffnERF 26: [ OK ] ExpfitTest.EffnERF (8 ms) 26: [ RUN ] ExpfitTest.EffnERREST 26: [ OK ] ExpfitTest.EffnERREST (3 ms) 26: [ RUN ] ExpfitTest.EffnVAC 26: [ OK ] ExpfitTest.EffnVAC (35 ms) 26: [ RUN ] ExpfitTest.EffnPRES 26: [ OK ] ExpfitTest.EffnPRES (60 ms) 26: [----------] 10 tests from ExpfitTest (252 ms total) 26: 26: [----------] Global test environment tear-down 26: [==========] 21 tests from 3 test cases ran. (331 ms total) 26: [ PASSED ] 21 tests. 26/33 Test #26: CorrelationsTest ................. Passed 0.35 sec test 27 Start 27: AnalysisDataUnitTests 27: Test command: /<>/build/basic-dp/bin/analysisdata-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/AnalysisDataUnitTests.xml" 27: Test timeout computed to be: 30 27: [==========] Running 69 tests from 14 test cases. 27: [----------] Global test environment set-up. 27: [----------] 3 tests from AnalysisDataInitializationTest 27: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 27: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 27: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules 27: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (1 ms) 27: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 27: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) 27: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/0 (6 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 27: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 27: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/1 (8 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (2 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 27: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (0 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (1 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/2 (9 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/3 (8 ms total) 27: 27: [----------] 4 tests from AnalysisArrayDataTest 27: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly 27: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisArrayDataTest.StorageWorks 27: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) 27: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 27: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 27: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 27: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) 27: [----------] 4 tests from AnalysisArrayDataTest (2 ms total) 27: 27: [----------] 6 tests from AverageModuleTest 27: [ RUN ] AverageModuleTest.BasicTest 27: [ OK ] AverageModuleTest.BasicTest (1 ms) 27: [ RUN ] AverageModuleTest.HandlesMultipointData 27: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) 27: [ RUN ] AverageModuleTest.HandlesMultipleDataSets 27: [ OK ] AverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [ RUN ] AverageModuleTest.HandlesDataSetAveraging 27: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) 27: [ RUN ] AverageModuleTest.CanCustomizeXAxis 27: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) 27: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 27: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) 27: [----------] 6 tests from AverageModuleTest (9 ms total) 27: 27: [----------] 2 tests from FrameAverageModuleTest 27: [ RUN ] FrameAverageModuleTest.BasicTest 27: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 27: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets 27: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 2 tests from FrameAverageModuleTest (3 ms total) 27: 27: [----------] 7 tests from AnalysisHistogramSettingsTest 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange (0 ms) 27: [----------] 7 tests from AnalysisHistogramSettingsTest (0 ms total) 27: 27: [----------] 2 tests from SimpleHistogramModuleTest 27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (2 ms) 27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll 27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) 27: [----------] 2 tests from SimpleHistogramModuleTest (5 ms total) 27: 27: [----------] 3 tests from WeightedHistogramModuleTest 27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly 27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (2 ms) 27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll 27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) 27: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets 27: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from WeightedHistogramModuleTest (6 ms total) 27: 27: [----------] 3 tests from BinAverageModuleTest 27: [ RUN ] BinAverageModuleTest.ComputesCorrectly 27: [ OK ] BinAverageModuleTest.ComputesCorrectly (2 ms) 27: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 27: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (2 ms) 27: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets 27: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from BinAverageModuleTest (6 ms total) 27: 27: [----------] 4 tests from AbstractAverageHistogramTest 27: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly 27: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 27: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (3 ms) 27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth 27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (2 ms) 27: [----------] 4 tests from AbstractAverageHistogramTest (9 ms total) 27: 27: [----------] 3 tests from LifetimeModuleTest 27: [ RUN ] LifetimeModuleTest.BasicTest 27: [ OK ] LifetimeModuleTest.BasicTest (1 ms) 27: [ RUN ] LifetimeModuleTest.CumulativeTest 27: [ OK ] LifetimeModuleTest.CumulativeTest (1 ms) 27: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets 27: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from LifetimeModuleTest (4 ms total) 27: 27: [----------] Global test environment tear-down 27: [==========] 69 tests from 14 test cases ran. (76 ms total) 27: [ PASSED ] 69 tests. 27/33 Test #27: AnalysisDataUnitTests ............ Passed 0.09 sec test 28 Start 28: SelectionUnitTests 28: Test command: /<>/build/basic-dp/bin/selection-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/SelectionUnitTests.xml" 28: Test timeout computed to be: 30 28: [==========] Running 190 tests from 10 test cases. 28: [----------] Global test environment set-up. 28: [----------] 1 test from IndexGroupTest 28: [ RUN ] IndexGroupTest.RemovesDuplicates 28: [ OK ] IndexGroupTest.RemovesDuplicates (0 ms) 28: [----------] 1 test from IndexGroupTest (0 ms total) 28: 28: [----------] 15 tests from IndexBlockTest 28: [ RUN ] IndexBlockTest.CreatesUnknownBlock 28: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesAtomBlock 28: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesResidueBlock 28: [ OK ] IndexBlockTest.CreatesResidueBlock (1 ms) 28: [ RUN ] IndexBlockTest.CreatesMoleculeBlock 28: [ OK ] IndexBlockTest.CreatesMoleculeBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion 28: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms) 28: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion 28: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms) 28: [ RUN ] IndexBlockTest.CreatesSingleBlock 28: [ OK ] IndexBlockTest.CreatesSingleBlock (1 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive 28: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksNegative 28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksNegative (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) 28: [----------] 15 tests from IndexBlockTest (2 ms total) 28: 28: [----------] 11 tests from IndexMapTest 28: [ RUN ] IndexMapTest.InitializesAtomBlock 28: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom 28: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 28: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (1 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue 28: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 28: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll 28: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 28: [ RUN ] IndexMapTest.InitializesMoleculeBlock 28: [ OK ] IndexMapTest.InitializesMoleculeBlock (1 ms) 28: [ RUN ] IndexMapTest.MapsSingleBlock 28: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 28: [ RUN ] IndexMapTest.MapsResidueBlocks 28: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 28: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 28: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (1 ms) 28: [ RUN ] IndexMapTest.HandlesMultipleRequests 28: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) 28: [----------] 11 tests from IndexMapTest (4 ms total) 28: 28: [----------] 15 tests from NeighborhoodSearchTest 28: [ RUN ] NeighborhoodSearchTest.SimpleSearch 28: [ OK ] NeighborhoodSearchTest.SimpleSearch (37 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY 28: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (40 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchBox 28: [ OK ] NeighborhoodSearchTest.GridSearchBox (5 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic 28: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (22 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC 28: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (11 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 28: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (4 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox 28: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (6 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 28: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch 28: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (106 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 28: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC 28: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC 28: [ OK ] NeighborhoodSearchTest.HandlesNullPBC (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 28: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions 28: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (8 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 28: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (2 ms) 28: [----------] 15 tests from NeighborhoodSearchTest (242 ms total) 28: 28: [----------] 12 tests from PositionCalculationTest 28: [ RUN ] PositionCalculationTest.ComputesAtomPositions 28: [ OK ] PositionCalculationTest.ComputesAtomPositions (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions 28: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 28: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions 28: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 28: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionMask 28: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (1 ms) 28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 28: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (1 ms) 28: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 28: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) 28: [----------] 12 tests from PositionCalculationTest (5 ms total) 28: 28: [----------] 30 tests from SelectionCollectionTest 28: [ RUN ] SelectionCollectionTest.HandlesNoSelections 28: [ OK ] SelectionCollectionTest.HandlesNoSelections (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType 28: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 28: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry 28: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 28: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 28: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 28: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions 28: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions 28: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 28: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes 28: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 28: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) 28: [----------] 30 tests from SelectionCollectionTest (15 ms total) 28: 28: [----------] 14 tests from SelectionCollectionInteractiveTest 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 28: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups 28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections 28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 28: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) 28: [----------] 14 tests from SelectionCollectionInteractiveTest (11 ms total) 28: 28: [----------] 66 tests from SelectionCollectionDataTest 28: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 28: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr 28: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResnr 28: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResIndex 28: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 28: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 28: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 28: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype 28: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesChain 28: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMass 28: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesCharge 28: [ OK ] SelectionCollectionDataTest.HandlesCharge (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 28: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode 28: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 28: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBeta 28: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResname 28: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 28: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 28: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (7 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier 28: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges 28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (2 ms) 28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology 28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 28: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 28: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections 28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed 28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 28: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 28: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching 28: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 28: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 28: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 28: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 28: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 28: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods 28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic 28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 28: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 28: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables 28: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables 28: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 28: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables 28: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) 28: [----------] 66 tests from SelectionCollectionDataTest (89 ms total) 28: 28: [----------] 17 tests from SelectionOptionTest 28: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 28: [ OK ] SelectionOptionTest.ParsesSimpleSelection (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired 28: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 28: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (1 ms) 28: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired 28: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (0 ms) 28: [ RUN ] SelectionOptionTest.ChecksEmptySelections 28: [ OK ] SelectionOptionTest.ChecksEmptySelections (1 ms) 28: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections 28: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooManySelections 28: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewSelections 28: [ OK ] SelectionOptionTest.HandlesTooFewSelections (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 28: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesAdjuster 28: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 28: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections 28: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 28: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (1 ms) 28: [----------] 17 tests from SelectionOptionTest (7 ms total) 28: 28: [----------] 9 tests from SelectionFileOptionTest 28: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 28: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 28: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 28: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 28: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 28: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile 28: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 28: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) 28: [----------] 9 tests from SelectionFileOptionTest (3 ms total) 28: 28: [----------] Global test environment tear-down 28: [==========] 190 tests from 10 test cases ran. (378 ms total) 28: [ PASSED ] 190 tests. 28/33 Test #28: SelectionUnitTests ............... Passed 0.40 sec test 29 Start 29: TrajectoryAnalysisUnitTests 29: Test command: /<>/build/basic-dp/bin/trajectoryanalysis-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TrajectoryAnalysisUnitTests.xml" 29: Test timeout computed to be: 30 29: [==========] Running 68 tests from 13 test cases. 29: [----------] Global test environment set-up. 29: [----------] 5 tests from ClustsizeTest 29: [ RUN ] ClustsizeTest.NoMolDefaultCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 29: There is one group in the index 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 24 29: cmid: 2, cmax: 4, max_size: 6 29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (3 ms) 29: [ RUN ] ClustsizeTest.NoMolShortCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 29: There is one group in the index 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 24 29: cmid: 1, cmax: 6, max_size: 6 29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (3 ms) 29: [ RUN ] ClustsizeTest.MolDefaultCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 2, cmax: 4, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (4 ms) 29: [ RUN ] ClustsizeTest.MolShortCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 1, cmax: 6, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (4 ms) 29: [ RUN ] ClustsizeTest.MolCSize 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 2, cmax: 4, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolCSize (4 ms) 29: [----------] 5 tests from ClustsizeTest (19 ms total) 29: 29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 29: Reading frames from gro file 'Test system', 8 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (5 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 29: Reading frames from gro file 'Test system', 8 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (5 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) 29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (12 ms total) 29: 29: [----------] 11 tests from AngleModuleTest 29: [ RUN ] AngleModuleTest.ComputesSimpleAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesSimpleAngles (6 ms) 29: [ RUN ] AngleModuleTest.ComputesDihedrals 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesDihedrals (6 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorPairAngles (5 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (6 ms) 29: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (6 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (5 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 29: Reading frames from gro file 'Test system for different angles', 33 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (7 ms) 29: [ RUN ] AngleModuleTest.ComputesMultipleAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesMultipleAngles (5 ms) 29: [ RUN ] AngleModuleTest.HandlesDynamicSelections 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesDynamicSelections (5 ms) 29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (6 ms) 29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (6 ms) 29: [----------] 11 tests from AngleModuleTest (64 ms total) 29: 29: [----------] 3 tests from DistanceModuleTest 29: [ RUN ] DistanceModuleTest.ComputesDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2: 29: Number of samples: 5 29: Average distance: 1.43246 nm 29: Standard deviation: 0.96700 nm 29: [ OK ] DistanceModuleTest.ComputesDistances (7 ms) 29: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2: 29: Number of samples: 5 29: Average distance: 1.43246 nm 29: Standard deviation: 0.96700 nm 29: resindex 1 to 4 and atomname CB merge resindex 2 to 5 and atomname CB: 29: Number of samples: 4 29: Average distance: 1.81066 nm 29: Standard deviation: 0.79289 nm 29: [ OK ] DistanceModuleTest.ComputesMultipleDistances (7 ms) 29: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2 and res_cog x < 2.8: 29: Number of samples: 3 29: Average distance: 1.72076 nm 29: Standard deviation: 1.24839 nm 29: [ OK ] DistanceModuleTest.HandlesDynamicSelections (7 ms) 29: [----------] 3 tests from DistanceModuleTest (21 ms total) 29: 29: [----------] 2 tests from FreeVolumeModuleTest 29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for 40 particles. These were set to zero. 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Analyzed 1 frames, last time 0.000 29: cutoff = 0.18 nm 29: probe_radius = 0 nm 29: seed = 13 29: ninsert = 1000 probes per nm^3 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David 29: van der Spoel and Luciano T. Costa 29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium 29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View 29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Free volume 38.02 +/- 0.00 % 29: Total volume 68.92 +/- 0.00 nm^3 29: Number of molecules 340 total mass 63491.38 Dalton 29: Average molar mass: 186.74 Dalton 29: Density rho: 1529.71 +/- 0.00 nm^3 29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 29: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 29: Fractional free volume 0.194 +/- 0.000 29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (242 ms) 29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Analyzed 1 frames, last time 0.000 29: cutoff = 0.18 nm 29: probe_radius = 0 nm 29: seed = 17 29: ninsert = 1000 probes per nm^3 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David 29: van der Spoel and Luciano T. Costa 29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium 29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View 29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Free volume 38.48 +/- 0.00 % 29: Total volume 68.92 +/- 0.00 nm^3 29: Number of molecules 340 total mass 63491.38 Dalton 29: Average molar mass: 186.74 Dalton 29: Density rho: 1529.71 +/- 0.00 nm^3 29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 29: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 29: Fractional free volume 0.200 +/- 0.000 29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (239 ms) 29: [----------] 2 tests from FreeVolumeModuleTest (481 ms total) 29: 29: [----------] 7 tests from PairDistanceModuleTest 29: [ RUN ] PairDistanceModuleTest.ComputesAllDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesAllDistances (6 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (6 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (6 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (6 ms) 29: [----------] 7 tests from PairDistanceModuleTest (40 ms total) 29: 29: [----------] 3 tests from RdfModuleTest 29: [ RUN ] RdfModuleTest.BasicTest 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.BasicTest (44 ms) 29: [ RUN ] RdfModuleTest.CalculatesSurf 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.CalculatesSurf (25 ms) 29: [ RUN ] RdfModuleTest.CalculatesXY 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.CalculatesXY (50 ms) 29: [----------] 3 tests from RdfModuleTest (120 ms total) 29: 29: [----------] 5 tests from SasaModuleTest 29: [ RUN ] SasaModuleTest.BasicTest 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.BasicTest (21 ms) 29: [ RUN ] SasaModuleTest.HandlesSelectedResidues 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesSelectedResidues (13 ms) 29: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (12 ms) 29: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (16 ms) 29: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (15 ms) 29: [----------] 5 tests from SasaModuleTest (82 ms total) 29: 29: [----------] 8 tests from SelectModuleTest 29: [ RUN ] SelectModuleTest.BasicTest 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.BasicTest (9 ms) 29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (8 ms) 29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (8 ms) 29: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (8 ms) 29: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (8 ms) 29: [ RUN ] SelectModuleTest.NormalizesSizes 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.NormalizesSizes (5 ms) 29: [ RUN ] SelectModuleTest.WritesResidueNumbers 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.WritesResidueNumbers (5 ms) 29: [ RUN ] SelectModuleTest.WritesResidueIndices 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.WritesResidueIndices (6 ms) 29: [----------] 8 tests from SelectModuleTest (58 ms total) 29: 29: [----------] 10 tests from SurfaceAreaTest 29: [ RUN ] SurfaceAreaTest.ComputesSinglePoint 29: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 29: [ RUN ] SurfaceAreaTest.ComputesTwoPoints 29: [ OK ] SurfaceAreaTest.ComputesTwoPoints (3 ms) 29: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius 29: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (2 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints12 29: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints32 29: [ OK ] SurfaceAreaTest.SurfacePoints32 (0 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints42 29: [ OK ] SurfaceAreaTest.SurfacePoints42 (1 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints122 29: [ OK ] SurfaceAreaTest.SurfacePoints122 (2 ms) 29: [ RUN ] SurfaceAreaTest.Computes100Points 29: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 29: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 29: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (5 ms) 29: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC 29: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (6 ms) 29: [----------] 10 tests from SurfaceAreaTest (22 ms total) 29: 29: [----------] 4 tests from TrajectoryModuleTest 29: [ RUN ] TrajectoryModuleTest.BasicTest 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.BasicTest (7 ms) 29: [ RUN ] TrajectoryModuleTest.PlotsXOnly 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.PlotsXOnly (6 ms) 29: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (5 ms) 29: [ RUN ] TrajectoryModuleTest.HandlesNoForces 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.HandlesNoForces (6 ms) 29: [----------] 4 tests from TrajectoryModuleTest (24 ms total) 29: 29: [----------] 5 tests from UnionFinderTest 29: [ RUN ] UnionFinderTest.WorksEmpty 29: [ OK ] UnionFinderTest.WorksEmpty (0 ms) 29: [ RUN ] UnionFinderTest.BasicMerges 29: [ OK ] UnionFinderTest.BasicMerges (0 ms) 29: [ RUN ] UnionFinderTest.LargerMerges 29: [ OK ] UnionFinderTest.LargerMerges (0 ms) 29: [ RUN ] UnionFinderTest.LongRightMerge 29: [ OK ] UnionFinderTest.LongRightMerge (0 ms) 29: [ RUN ] UnionFinderTest.LongLeftMerge 29: [ OK ] UnionFinderTest.LongLeftMerge (0 ms) 29: [----------] 5 tests from UnionFinderTest (1 ms total) 29: 29: [----------] 1 test from MappedUnionFinderTest 29: [ RUN ] MappedUnionFinderTest.BasicMerges 29: [ OK ] MappedUnionFinderTest.BasicMerges (0 ms) 29: [----------] 1 test from MappedUnionFinderTest (0 ms total) 29: 29: [----------] Global test environment tear-down 29: [==========] 68 tests from 13 test cases ran. (944 ms total) 29: [ PASSED ] 68 tests. 29/33 Test #29: TrajectoryAnalysisUnitTests ...... Passed 0.96 sec test 30 Start 30: EnergyAnalysisUnitTests 30: Test command: /<>/build/basic-dp/bin/energyanalysis-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/EnergyAnalysisUnitTests.xml" 30: Test timeout computed to be: 30 30: [==========] Running 7 tests from 4 test cases. 30: [----------] Global test environment set-up. 30: [----------] 1 test from DhdlTest 30: [ RUN ] DhdlTest.ExtractDhdl 30: Opened /<>/src/gromacs/energyanalysis/tests/dhdl.edr as double precision energy file 30: Reading file /<>/src/gromacs/energyanalysis/tests/dhdl.tpr, VERSION 2016-dev-20160810-e3ded7f (double precision) 30: Note: file tpx version 110, software tpx version 112 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.010 Reading energy frame 2 time 0.020 Reading energy frame 3 time 0.030 Reading energy frame 4 time 0.040 Reading energy frame 5 time 0.050 Reading energy frame 6 time 0.060 Reading energy frame 7 time 0.070 Reading energy frame 8 time 0.080 Reading energy frame 9 time 0.090 Reading energy frame 10 time 0.100 Reading energy frame 11 time 0.110 Reading energy frame 12 time 0.120 Reading energy frame 13 time 0.130 Reading energy frame 14 time 0.140 Reading energy frame 15 time 0.150 Reading energy frame 16 time 0.160 Reading energy frame 17 time 0.170 Reading energy frame 18 time 0.180 Reading energy frame 19 time 0.190 Reading energy frame 20 time 0.200 Reading energy frame 30 time 0.300 Reading energy frame 40 time 0.400 Reading energy frame 50 time 0.500 Reading energy frame 60 time 0.600 Reading energy frame 70 time 0.700 Reading energy frame 80 time 0.800 Reading energy frame 90 time 0.900 Reading energy frame 100 time 1.000 Last energy frame read 100 time 1.000 30: 30: 30: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /<>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg 30: [ OK ] DhdlTest.ExtractDhdl (14 ms) 30: [----------] 1 test from DhdlTest (15 ms total) 30: 30: [----------] 1 test from OriresTest 30: [ RUN ] OriresTest.ExtractOrires 30: Opened /<>/src/gromacs/energyanalysis/tests/orires.edr as single precision energy file 30: Reading file /<>/src/gromacs/energyanalysis/tests/orires.tpr, VERSION 2017-dev-20170725-fea8651 (single precision) 30: Note: file tpx version 111, software tpx version 112 30: Found 7 orientation restraints with 1 experimentsSelect the orientation restraint labels you want (-1 is all) 30: End your selection with 0 30: Selecting all 7 orientation restraints 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 30: [ OK ] OriresTest.ExtractOrires (15 ms) 30: [----------] 1 test from OriresTest (15 ms total) 30: 30: [----------] 3 tests from EnergyTest 30: [ RUN ] EnergyTest.ExtractEnergy 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) 30: [ OK ] EnergyTest.ExtractEnergy (5 ms) 30: [ RUN ] EnergyTest.ExtractEnergyByNumber 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol) 30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 30: Pres. DC -268.49 3 8.52175 13.2804 (bar) 30: [ OK ] EnergyTest.ExtractEnergyByNumber (5 ms) 30: [ RUN ] EnergyTest.ExtractEnergyMixed 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 4 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: [ OK ] EnergyTest.ExtractEnergyMixed (5 ms) 30: [----------] 3 tests from EnergyTest (15 ms total) 30: 30: [----------] 2 tests from ViscosityTest 30: [ RUN ] ViscosityTest.EinsteinViscosity 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Pres-XX 20.2092 65 717.193 185.978 (bar) 30: Pres-XY -47.7351 39 372.522 207.456 (bar) 30: Pres-XZ 11.477 31 379.79 6.80818 (bar) 30: Pres-YX -47.7106 39 372.525 207.5 (bar) 30: Pres-YY 38.9241 40 803.899 -27.1505 (bar) 30: Pres-YZ -41.3534 45 401.216 114.663 (bar) 30: Pres-ZX 11.5238 31 379.804 6.91707 (bar) 30: Pres-ZY -41.3119 45 401.196 114.743 (bar) 30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar) 30: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: [ OK ] ViscosityTest.EinsteinViscosity (10 ms) 30: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Pres-XX 20.2092 65 717.193 185.978 (bar) 30: Pres-XY -47.7351 39 372.522 207.456 (bar) 30: Pres-XZ 11.477 31 379.79 6.80818 (bar) 30: Pres-YX -47.7106 39 372.525 207.5 (bar) 30: Pres-YY 38.9241 40 803.899 -27.1505 (bar) 30: Pres-YZ -41.3534 45 401.216 114.663 (bar) 30: Pres-ZX 11.5238 31 379.804 6.91707 (bar) 30: Pres-ZY -41.3119 45 401.196 114.743 (bar) 30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar) 30: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: [ OK ] ViscosityTest.EinsteinViscosityIntegral (10 ms) 30: [----------] 2 tests from ViscosityTest (20 ms total) 30: 30: [----------] Global test environment tear-down 30: [==========] 7 tests from 4 test cases ran. (67 ms total) 30: [ PASSED ] 7 tests. 30/33 Test #30: EnergyAnalysisUnitTests .......... Passed 0.08 sec test 31 Start 31: CompatibilityHelpersTests 31: Test command: /<>/build/basic-dp/bin/compat-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/CompatibilityHelpersTests.xml" 31: Test timeout computed to be: 30 31: [==========] Running 1 test from 1 test case. 31: [----------] Global test environment set-up. 31: [----------] 1 test from CompatibilityHelper 31: [ RUN ] CompatibilityHelper.MakeUniqueCompiles 31: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms) 31: [----------] 1 test from CompatibilityHelper (0 ms total) 31: 31: [----------] Global test environment tear-down 31: [==========] 1 test from 1 test case ran. (0 ms total) 31: [ PASSED ] 1 test. 31/33 Test #31: CompatibilityHelpersTests ........ Passed 0.01 sec test 32 Start 32: MdrunTests 32: Test command: /<>/build/basic-dp/bin/mdrun-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdrunTests.xml" 32: Test timeout computed to be: 600 32: [==========] Running 30 tests from 11 test cases. 32: [----------] Global test environment set-up. 32: [----------] 6 tests from BondedInteractionsTest 32: [ RUN ] BondedInteractionsTest.NormalBondWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 368207160 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_NormalBondWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 2 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 20 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 128.506 0.187 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalBondWorks (21 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -1577091107 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_TabulatedBondWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 2 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 24 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 148.337 0.162 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedBondWorks (20 ms) 32: [ RUN ] BondedInteractionsTest.NormalAngleWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 212915621 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_NormalAngleWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 1 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 28 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 141.946 0.169 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalAngleWorks (19 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 791950244 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_TabulatedAngleWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 1 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 21 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 143.350 0.167 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (20 ms) 32: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -1448216987 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 17 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 167.385 0.143 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalDihedralWorks (19 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -2026297012 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 29 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 143.748 0.167 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (21 ms) 32: [----------] 6 tests from BondedInteractionsTest (120 ms total) 32: 32: [----------] 1 test from GromppTest 32: [ RUN ] GromppTest.EmptyMdpFileWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -146647074 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 12.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: NVE simulation: will use the initial temperature of 1046.791 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 32: Calculated rlist for 1x1 atom pair-list as 1.061 nm, buffer size 0.061 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: [ OK ] GromppTest.EmptyMdpFileWorks (45 ms) 32: [----------] 1 test from GromppTest (45 ms total) 32: 32: [----------] 1 test from CompelTest 32: [ RUN ] CompelTest.SwapCanRun 32: 32: NOTE 1 [file /<>/src/programs/mdrun/tests/OctaneSandwich.mdp]: 32: The Berendsen thermostat does not generate the correct kinetic energy 32: distribution. You might want to consider using the V-rescale thermostat. 32: 32: Setting the LD random seed to -1707903483 32: Generated 330891 of the 330891 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 330891 of the 330891 1-4 parameter combinations 32: Excluding 3 bonded neighbours molecule type 'Protein' 32: Excluding 3 bonded neighbours molecule type 'OCT' 32: Excluding 1 bonded neighbours molecule type 'NA' 32: Excluding 1 bonded neighbours molecule type 'CL' 32: Excluding 3 bonded neighbours molecule type 'Protein' 32: Excluding 3 bonded neighbours molecule type 'OCT' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Split0 group 'Ch0' contains 83 atoms. 32: Split1 group 'Ch1' contains 83 atoms. 32: Solvent group 'SOL' contains 11931 atoms. 32: Swap group 'NA+' contains 19 atoms. 32: Swap group 'CL-' contains 19 atoms. 32: Number of degrees of freedom in T-Coupling group System is 27869.00 32: 32: NOTE 2 [file /<>/src/programs/mdrun/tests/OctaneSandwich.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: SWAP: Determining initial numbers of ions per compartment. 32: SWAP: Setting pointers for checkpoint writing 32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules 32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules 32: starting mdrun 'Channel_coco in octane membrane' 32: 2 steps, 0.0 ps. 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 32: Calculated rlist for 1x1 atom pair-list as 1.314 nm, buffer size 0.314 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.260 nm, buffer size 0.260 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 1 Mb of data 32: 32: Writing final coordinates. 32: 32: NOTE: 16 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 2.079 2.079 100.0 32: (ns/day) (hour/ns) 32: Performance: 0.624 38.492 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018.2 (double precision) 32: 32: Reading checkpoint file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.cpt generated: Sat Jun 16 23:49:06 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: SWAP: Setting pointers for checkpoint writing 32: SWAP: Copying channel fluxes from checkpoint file data 32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules 32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules 32: starting mdrun 'Channel_coco in octane membrane' 32: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps). 32: 32: Writing final coordinates. 32: 32: NOTE: 10 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 1.777 1.777 100.0 32: (ns/day) (hour/ns) 32: Performance: 0.729 32.909 32: [ OK ] CompelTest.SwapCanRun (4827 ms) 32: [----------] 1 test from CompelTest (4828 ms total) 32: 32: [----------] 1 test from ImdTest 32: [ RUN ] ImdTest.ImdCanRun 32: 32: NOTE 1 [file /<>/src/programs/mdrun/tests/spc2-IMD.mdp]: 32: The Berendsen thermostat does not generate the correct kinetic energy 32: distribution. You might want to consider using the V-rescale thermostat. 32: 32: Setting the LD random seed to 733285356 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Group 'SecondWaterMolecule' with 3 atoms can be activated for interactive molecular dynamics (IMD). 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/src/programs/mdrun/tests/spc2-IMD.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/ImdTest_ImdCanRun.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 50, rlist from 1.121 to 1.344 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: IMD: Enabled. This simulation will accept incoming IMD connections. 32: IMD: You chose a port number < 1. Will automatically assign a free port. 32: IMD: Pulling from IMD remote is enabled (-imdpull). 32: IMD: Turning on IMD - port for incoming requests is 0. 32: IMD: Setting up incoming socket. 32: IMD: Listening for IMD connection on port 60809. 32: IMD: -imdwait not set, starting simulation. 32: starting mdrun 'spc2' 32: 2 steps, 0.0 ps. 32: turning all bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 32: Calculated rlist for 1x1 atom pair-list as 1.134 nm, buffer size 0.134 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.121 nm, buffer size 0.121 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 200.769 0.120 32: [ OK ] ImdTest.ImdCanRun (24 ms) 32: [----------] 1 test from ImdTest (24 ms total) 32: 32: [----------] 2 tests from MdrunTerminationTest 32: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp, line 6]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 820469010 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 1, rlist from 1.024 to 1 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc2' 32: 100 steps, 0.1 ps. 32: 32: Step 2: Run time exceeded 0.000 hours, will terminate the run 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 83.245 0.288 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018.2 (double precision) 32: 32: Reading checkpoint file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.cpt generated: Sat Jun 16 23:49:08 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 32: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 32: 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc2' 32: 5 steps, 0.0 ps (continuing from step 3, 0.0 ps). 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 94.265 0.255 32: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (36 ms) 32: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp, line 6]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1844498862 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 1, rlist from 1.024 to 1 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc2' 32: 100 steps, 0.1 ps. 32: 32: Step 3: Run time exceeded 0.000 hours, will terminate the run 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 115.594 0.208 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2018.2 (double precision) 32: 32: Reading checkpoint file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.cpt generated: Sat Jun 16 23:49:08 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 32: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 32: 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc2' 32: 6 steps, 0.0 ps (continuing from step 4, 0.0 ps). 32: Checkpoint file is from part 1, new output files will be suffixed '.part0002'. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 70.862 0.339 32: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (37 ms) 32: [----------] 2 tests from MdrunTerminationTest (73 ms total) 32: 32: [----------] 1 test from PmeTest 32: [ RUN ] PmeTest.ReproducesEnergies 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp, line 6]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -834962536 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]: 32: NVE simulation: will use the initial temperature of 1046.791 K for 32: determining the Verlet buffer size 32: 32: Estimate for the relative computational load of the PME mesh part: 1.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]: 32: The optimal PME mesh load for parallel simulations is below 0.5 32: and for highly parallel simulations between 0.25 and 0.33, 32: for higher performance, increase the cut-off and the PME grid spacing. 32: 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 32: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.000 nm, buffer size 0.000 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: Calculating fourier grid dimensions for X Y Z 32: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.091 0.091 100.0 32: (ns/day) (hour/ns) 32: Performance: 20.041 1.198 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.091 0.091 100.0 32: (ns/day) (hour/ns) 32: Performance: 19.881 1.207 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.092 0.092 100.0 32: (ns/day) (hour/ns) 32: Performance: 19.718 1.217 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (365 ms) 32: [----------] 1 test from PmeTest (365 ms total) 32: 32: [----------] 3 tests from Checking/InitialConstraintsTest 32: [ RUN ] Checking/InitialConstraintsTest.Works/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1698800345 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 49.399 0.486 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (59 ms) 32: [ RUN ] Checking/InitialConstraintsTest.Works/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1646119166 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 3 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 46.878 0.512 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (60 ms) 32: [ RUN ] Checking/InitialConstraintsTest.Works/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: Integrator method md-vv-avek is implemented primarily for validation 32: purposes; for molecular dynamics, you should probably be using md or md-vv 32: 32: Setting the LD random seed to 944015219 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2.tpr, VERSION 2018.2 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 43.093 0.557 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (61 ms) 32: [----------] 3 tests from Checking/InitialConstraintsTest (181 ms total) 32: 32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1738709558 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.trr' 32: 32: trr version: GMX_trn_file (single precision) 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 284.114 0.084 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 (18 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -111140906 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.tng' 32: 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 170.897 0.140 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 (18 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 72385476 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.xtc' 32: 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 99.9 32: (ns/day) (hour/ns) 32: Performance: 373.788 0.064 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 (17 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 173964888 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.gro' 32: 32: Reading frames from gro file '', 6 atoms. 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 245.105 0.098 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 (17 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1848503015 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.pdb' 32: 32: Reading frames from pdb file Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: 't= 0.00000', 6 atoms 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 281.139 0.085 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 (17 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1561419044 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.g96' 32: 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 229.869 0.104 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 (18 ms) 32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun (105 ms total) 32: 32: [----------] 3 tests from MdrunCanWrite/Trajectories 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp, line 12]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 1912375516 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.009 0.009 100.0 32: (ns/day) (hour/ns) 32: Performance: 71.009 0.338 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (67 ms) 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -368185127 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.009 0.009 100.0 32: (ns/day) (hour/ns) 32: Performance: 70.582 0.340 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (68 ms) 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 167827658 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.009 0.009 100.0 32: (ns/day) (hour/ns) 32: Performance: 69.772 0.344 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (67 ms) 32: [----------] 3 tests from MdrunCanWrite/Trajectories (202 ms total) 32: 32: [----------] 3 tests from MdrunCanWrite/NptTrajectories 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1592983197 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 57.087 0.420 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (64 ms) 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -632019149 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 57.009 0.421 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (63 ms) 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 443857496 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2.tpr, VERSION 2018.2 (double precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: WARNING: Using the slow plain C kernels. This should 32: not happen during routine usage on supported platforms. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 57.385 0.418 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (63 ms) 32: [----------] 3 tests from MdrunCanWrite/NptTrajectories (190 ms total) 32: 32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -728798304 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 36.614 0.655 32: Reading frame 0 time 0.000 32: # Atoms 6 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (23 ms) 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1921630597 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 40.906 0.587 32: Reading frame 0 time 0.000 32: # Atoms 6 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (22 ms) 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -877975204 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.tpr, VERSION 2018.2 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 43.775 0.548 32: Reading frame 0 time 0.000 32: # Atoms 3 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (21 ms) 32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (67 ms total) 32: 32: [----------] Global test environment tear-down 32: [==========] 30 tests from 11 test cases ran. (6202 ms total) 32: [ PASSED ] 30 tests. 32/33 Test #32: MdrunTests ....................... Passed 6.26 sec test 33 Start 33: MdrunMpiTests 33: Test command: /<>/build/basic-dp/bin/mdrun-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdrunMpiTests.xml" 33: Test timeout computed to be: 600 33: [==========] Running 3 tests from 3 test cases. 33: [----------] Global test environment set-up. 33: [----------] 1 test from MultiSimTerminationTest 33: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 33: [ OK ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms) 33: [----------] 1 test from MultiSimTerminationTest (0 ms total) 33: 33: [----------] 1 test from ReplicaExchangeTerminationTest 33: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 33: [ OK ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms) 33: [----------] 1 test from ReplicaExchangeTerminationTest (0 ms total) 33: 33: [----------] 1 test from DomainDecompositionSpecialCasesTest 33: [ RUN ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks 33: 33: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: For a correct single-point energy evaluation with nsteps = 0, use 33: continuation = yes to avoid constraining the input coordinates. 33: 33: Setting the LD random seed to -307018616 33: Generated 3 of the 3 non-bonded parameter combinations 33: Generating 1-4 interactions: fudge = 0.5 33: Generated 3 of the 3 1-4 parameter combinations 33: Excluding 2 bonded neighbours molecule type 'SOL' 33: Removing all charge groups because cutoff-scheme=Verlet 33: Number of degrees of freedom in T-Coupling group rest is 9.00 33: 33: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: NVE simulation with an initial temperature of zero: will use a Verlet 33: buffer of 10%. Check your energy drift! 33: 33: 33: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: You are using a plain Coulomb cut-off, which might produce artifacts. 33: You might want to consider using PME electrostatics. 33: 33: 33: 33: There were 3 notes 33: Compiled SIMD: None, but for this host/run ARM_NEON might be better (see log). 33: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks.tpr, VERSION 2018.2 (double precision) 33: Can not increase nstlist because an NVE ensemble is used 33: Using 2 MPI threads 33: Using 1 OpenMP thread per tMPI thread 33: 33: 33: NOTE: The number of threads is not equal to the number of (logical) cores 33: and the -pin option is set to auto: will not pin threads to cores. 33: This can lead to significant performance degradation. 33: Consider using -pin on (and -pinoffset in case you run multiple jobs). 33: 33: WARNING: Using the slow plain C kernels. This should 33: not happen during routine usage on supported platforms. 33: starting mdrun 'spc2' 33: 0 steps, 0.0 ps. 33: 33: NOTE: 14 % of the run time was spent in domain decomposition, 33: 50 % of the run time was spent in pair search, 33: you might want to increase nstlist (this has no effect on accuracy) 33: 33: Core t (s) Wall t (s) (%) 33: Time: 0.001 0.001 199.9 33: (ns/day) (hour/ns) 33: Performance: 149.623 0.160 33: This run will generate roughly 0 Mb of data 33: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (24 ms) 33: [----------] 1 test from DomainDecompositionSpecialCasesTest (24 ms total) 33: 33: [----------] Global test environment tear-down 33: [==========] 3 tests from 3 test cases ran. (25 ms total) 33: [ PASSED ] 3 tests. 33: 33: YOU HAVE 4 DISABLED TESTS 33: 33/33 Test #33: MdrunMpiTests .................... Passed 0.04 sec 100% tests passed, 0 tests failed out of 33 Label Time Summary: GTest = 10.76 sec*proc (33 tests) IntegrationTest = 6.36 sec*proc (3 tests) MpiTest = 0.10 sec*proc (3 tests) UnitTest = 4.40 sec*proc (30 tests) Total Test time (real) = 10.82 sec touch build-basic dh_testdir /usr/bin/make -j4 -C build/mpich make[1]: Entering directory '/<>/build/mpich' /usr/bin/cmake -H/<> -B/<>/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles /<>/build/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich /<>/build/mpich/src/programs /<>/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp make[3]: Leaving directory '/<>/build/mpich' [ 1%] Built target mdrun_objlib make[3]: Leaving directory '/<>/build/mpich' [ 5%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/mpich/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/mpich/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich 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/<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/mdtypes/state.h:59, from /<>/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/mdtypes/state.h:59, from /<>/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/7/bits/stl_vector.h: In function ‘void init_gtc_state(t_state*, int, int, int)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<>/src/gromacs/tables/forcetable.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<>/src/gromacs/tables/quadraticsplinetable.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<>/src/gromacs/tables/splineutil.cpp /<>/src/gromacs/tables/cubicsplinetable.cpp: In constructor ‘gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)’: /<>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 /<>/src/gromacs/tables/splineutil.cpp: In function ‘real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:210:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp: In function ‘real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:287:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp: In function ‘void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<>/src/gromacs/timing/cyclecounter.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<>/src/gromacs/timing/wallcycle.cpp /<>/src/gromacs/tables/splineutil.cpp: In function ‘std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)’: /<>/src/gromacs/tables/splineutil.cpp:306:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 vectorSecondDerivative(ArrayRef f, double spacing) ^~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<>/src/gromacs/timing/walltime_accounting.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<>/src/gromacs/topology/atomprop.cpp /<>/src/gromacs/tables/quadraticsplinetable.cpp: In constructor ‘gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)’: /<>/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, ^~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<>/src/gromacs/topology/atoms.cpp /<>/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); ^ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<>/src/gromacs/topology/atomsbuilder.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<>/src/gromacs/topology/block.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<>/src/gromacs/topology/idef.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<>/src/gromacs/topology/ifunc.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<>/src/gromacs/topology/index.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<>/src/gromacs/topology/invblock.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<>/src/gromacs/topology/mtop_util.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /<>/src/gromacs/topology/residuetypes.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /<>/src/gromacs/topology/symtab.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /<>/src/gromacs/topology/topology.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /<>/src/gromacs/topology/topsort.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /<>/src/gromacs/utility/alignedallocator.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /<>/src/gromacs/utility/basenetwork.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /<>/src/gromacs/utility/compare.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /<>/src/gromacs/utility/coolstuff.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /<>/src/gromacs/utility/cstringutil.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /<>/src/gromacs/utility/datafilefinder.cpp cd 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-I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<>/src/gromacs/utility/gmxregex.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<>/src/gromacs/utility/ikeyvaluetreeerror.cpp cd 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-I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/keyvaluetreeserializer.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /<>/src/gromacs/utility/messagestringcollector.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<>/src/gromacs/utility/niceheader.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<>/src/gromacs/utility/pleasecite.cpp cd 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-I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/mpich/src/gromacs && 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-fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/biasparams.h:53, from /<>/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp: In member function ‘void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)’: /<>/src/gromacs/awh/bias.cpp:376:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, ^~~~ /<>/src/gromacs/awh/bias.cpp:397:45: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/gromacs/awh/bias.cpp:68:0: /<>/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp: In member function ‘gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, gmx_int64_t, gmx_int64_t, FILE*)’: /<>/src/gromacs/awh/bias.cpp:142:39: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 updateForceCorrelationGrid(probWeightNeighbor, t); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tempForce_, biasForce_); ~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:170:19: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 potential = ~~~~~~~~~~^ state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); ^ /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/awh.h:69, from /<>/src/gromacs/awh/awh.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx::AwhParams&, const string&, pull_t*)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp /<>/src/gromacs/awh/biasstate.cpp: In function ‘void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)’: /<>/src/gromacs/awh/biasstate.cpp:294:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void updateTargetDistribution(gmx::ArrayRef pointState, ^~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const’: /<>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const’: /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::calcConvolvedForce(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp: In member function ‘double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx_int64_t, gmx_int64_t, int)’: /<>/src/gromacs/awh/biasstate.cpp:475:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double BiasState::moveUmbrella(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:475:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:484:40: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:484:40: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)’: /<>/src/gromacs/awh/biasstate.cpp:1232:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::sampleProbabilityWeights(const Grid &grid, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)’: /<>/src/gromacs/awh/biasstate.cpp:1287:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::sampleCoordAndPmf(const Grid &grid, ^~~~~~~~~ /<>/src/gromacs/awh/coordstate.cpp: In member function ‘void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, gmx_int64_t, gmx_int64_t, int)’: /<>/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 CoordState::sampleUmbrellaGridpoint(const Grid &grid, ^~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp /<>/src/gromacs/awh/correlationtensor.cpp: In member function ‘void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)’: /<>/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void CorrelationTensor::addData(double weight, ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/correlationtensor.h:51, from /<>/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::CorrelationBlockData}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, gmx_int64_t, FILE*, std::vector*)’: /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); ^ /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::CorrelationTensor::CorrelationTensor(int, int, double)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp /<>/src/gromacs/awh/histogramsize.cpp: In member function ‘double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)’: /<>/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, ^~~~~~~~~~~~~ /<>/src/gromacs/awh/histogramsize.cpp: In member function ‘double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)’: /<>/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double HistogramSize::newHistogramSize(const BiasParams ¶ms, ^~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/dimparams.h:52, from /<>/src/gromacs/awh/grid.h:60, from /<>/src/gromacs/awh/grid.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::GridAxis}; _Tp = gmx::GridAxis; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In function ‘void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<>/src/gromacs/gmxlib/chargegroup.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<>/src/gromacs/gmxlib/conformation-utilities.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<>/src/gromacs/gmxlib/network.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<>/src/gromacs/mdlib/broadcaststructs.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/calc_verletbuf.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp cd 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_tuning.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<>/src/gromacs/mdlib/ns.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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/<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp cd /<>/build/mpich/src/gromacs && 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-DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<>/src/gromacs/fft/parallel_3dfft.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<>/src/gromacs/gpu_utils/gpu_utils.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /<>/src/gromacs/hardware/cpuinfo.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /<>/src/gromacs/hardware/detecthardware.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<>/src/gromacs/hardware/gpu_hw_info.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/hardwaretopology.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /<>/src/gromacs/hardware/printhardware.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /<>/src/gromacs/hardware/identifyavx512fmaunits.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /<>/src/gromacs/mdrunutility/handlerestart.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<>/src/gromacs/mdrunutility/mdmodules.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/threadaffinity.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /<>/src/gromacs/options/abstractoption.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /<>/src/gromacs/options/abstractsection.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /<>/src/gromacs/options/basicoptions.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<>/src/gromacs/options/behaviorcollection.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /<>/src/gromacs/options/filenameoption.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/filenameoptionmanager.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<>/src/gromacs/options/options.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<>/src/gromacs/options/optionsassigner.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<>/src/gromacs/options/optionsection.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /<>/src/gromacs/options/optionsvisitor.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /<>/src/gromacs/options/timeunitmanager.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<>/src/gromacs/options/treesupport.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /<>/src/gromacs/taskassignment/decidegpuusage.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /<>/src/gromacs/taskassignment/findallgputasks.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/options/basicoptions.h:50, from /<>/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<>/src/gromacs/taskassignment/reportgpuusage.cpp In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/options/basicoptions.h:50, from /<>/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<>/src/gromacs/taskassignment/resourcedivision.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<>/src/gromacs/taskassignment/taskassignment.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/usergpuids.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /<>/src/external/thread_mpi/src/tmpi_malloc.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<>/src/external/thread_mpi/src/atomic.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /<>/src/external/thread_mpi/src/lock.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o -c 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CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpi.mpich.a make[3]: Leaving directory '/<>/build/mpich' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich /<>/build/mpich/src/programs /<>/build/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /<>/src/programs/mdrun_main.cpp cd /<>/build/mpich/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../bin/mdrun_mpi.mpich ../../lib/libgromacs_mdrun_mpi.mpich.a -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lpthread -lm make[3]: Leaving directory '/<>/build/mpich' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/mpich' /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles 0 make[1]: Leaving directory '/<>/build/mpich' /usr/bin/make -j4 -C build/mpich-dp make[1]: Entering directory '/<>/build/mpich-dp' /usr/bin/cmake -H/<> -B/<>/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/mpich-dp/CMakeFiles /<>/build/mpich-dp/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich-dp /<>/build/mpich-dp/src/programs /<>/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs /<>/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c /<>/src/programs/mdrun/md.cpp: In function ‘double gmx::do_md(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/programs/mdrun/md.cpp:1247:21: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, ir, step, nrnb, wcycle, top, groups, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->box, state->x, &state->hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f, force_vir, mdatoms, enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->lambda, graph, ~~~~~~~~~~~~~~~~~~~~~ fr, vsite, mu_tot, t, ed, bBornRadii, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bNS ? GMX_FORCE_NS : 0) | force_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddOpenBalanceRegion, ddCloseBalanceRegion); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1247:21: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/programs/mdrun/md.cpp:1247:21: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/programs/mdrun/md.cpp:1279:26: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 update_coords(fplog, step, ir, mdatoms, state, f, fcd, ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ekind, M, upd, etrtVELOCITY1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cr, constr); ~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1286:35: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 update_constraints(fplog, step, nullptr, ir, mdatoms, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state, fr->bMolPBC, graph, f, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &top->idef, shake_vir, ~~~~~~~~~~~~~~~~~~~~~~ cr, nrnb, wcycle, upd, constr, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRUE, bCalcVir); ~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1406:25: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 sum_dhdl(enerd, state->lambda, ir->fepvals); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1431:33: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 do_md_trajectory_writing(fplog, cr, nfile, fnm, step, step_rel, t, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ir, state, state_global, observablesHistory, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, fr, ~~~~~~~~~~~~~~~ outf, mdebin, ekind, f, ~~~~~~~~~~~~~~~~~~~~~~~ &nchkpt, ~~~~~~~~ bCPT, bRerunMD, bLastStep, ~~~~~~~~~~~~~~~~~~~~~~~~~~ mdrunOptions.writeConfout, ~~~~~~~~~~~~~~~~~~~~~~~~~~ bSumEkinhOld); ~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1541:35: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 update_constraints(fplog, step, nullptr, ir, mdatoms, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state, fr->bMolPBC, graph, f, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &top->idef, tmp_vir, ~~~~~~~~~~~~~~~~~~~~ cr, nrnb, wcycle, upd, constr, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRUE, bCalcVir); ~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1581:30: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 update_coords(fplog, step, ir, mdatoms, state, f, fcd, ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ekind, M, upd, etrtVELOCITY2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cr, constr); ~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1602:26: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 update_coords(fplog, step, ir, mdatoms, state, f, fcd, ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ekind, M, upd, etrtPOSITION, cr, constr); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1606:31: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 update_constraints(fplog, step, &dvdl_constr, ir, mdatoms, state, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fr->bMolPBC, graph, f, ~~~~~~~~~~~~~~~~~~~~~~ &top->idef, shake_vir, ~~~~~~~~~~~~~~~~~~~~~~ cr, nrnb, wcycle, upd, constr, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ FALSE, bCalcVir); ~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1627:30: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 update_coords(fplog, step, ir, mdatoms, state, f, fcd, ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ekind, M, upd, etrtPOSITION, cr, constr); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1636:35: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 update_constraints(fplog, step, nullptr, ir, mdatoms, ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state, fr->bMolPBC, graph, f, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &top->idef, tmp_vir, ~~~~~~~~~~~~~~~~~~~~ cr, nrnb, wcycle, upd, nullptr, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ FALSE, bCalcVir); ~~~~~~~~~~~~~~~~ /<>/src/programs/mdrun/md.cpp:1741:21: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 sum_dhdl(enerd, state->lambda, ir->fepvals); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c /<>/src/programs/mdrun/runner.cpp: In member function ‘int gmx::Mdrunner::mdrunner()’: /<>/src/programs/mdrun/runner.cpp:1221:38: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 constructVsitesGlobal(*mtop, globalState->x); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/build/mpich-dp' [ 1%] Built target mdrun_objlib make[3]: Leaving directory '/<>/build/mpich-dp' [ 5%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/mpich-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/mpich-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs /<>/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodule.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodulemanager.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<>/src/gromacs/commandline/filenm.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<>/src/gromacs/commandline/pargs.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<>/src/gromacs/commandline/shellcompletions.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<>/src/gromacs/commandline/viewit.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<>/src/gromacs/domdec/dlbtiming.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<>/src/gromacs/domdec/domdec.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<>/src/gromacs/domdec/domdec_box.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<>/src/gromacs/domdec/domdec_constraints.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<>/src/gromacs/domdec/domdec_network.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<>/src/gromacs/domdec/domdec_setup.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<>/src/gromacs/domdec/domdec_specatomcomm.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<>/src/gromacs/domdec/domdec_topology.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<>/src/gromacs/domdec/domdec_vsite.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<>/src/gromacs/ewald/calculate-spline-moduli.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<>/src/gromacs/ewald/ewald-utils.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<>/src/gromacs/ewald/pme-gather.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/ewald/pme-gpu-internal.h:51, from /<>/src/gromacs/ewald/pme-gpu-internal.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = double*; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/ewald/pme-gpu-internal.h:51, from /<>/src/gromacs/ewald/pme-gpu-internal.cpp:47: /usr/include/c++/7/bits/stl_vector.h: In function ‘void pme_gpu_copy_common_data_from(const gmx_pme_t*)’: /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp /<>/src/gromacs/domdec/domdec.cpp: In function ‘void dd_collect_vec(gmx_domdec_t*, const t_state*, gmx::ArrayRef >, gmx::ArrayRef >)’: /<>/src/gromacs/domdec/domdec.cpp:1277:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void dd_collect_vec(gmx_domdec_t *dd, ^~~~~~~~~~~~~~ /<>/src/gromacs/domdec/domdec.cpp:1277:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 /<>/src/gromacs/domdec/domdec.cpp: In function ‘void dd_collect_state(gmx_domdec_t*, const t_state*, t_state*)’: /<>/src/gromacs/domdec/domdec.cpp:1339:23: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(dd, state_local, state_local->x, globalXRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/domdec/domdec.cpp:1344:23: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(dd, state_local, state_local->v, globalVRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/domdec/domdec.cpp:1349:23: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(dd, state_local, state_local->cg_p, globalCgpRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp /<>/src/gromacs/mdtypes/state.cpp: In function ‘real (* makeRvecArray(gmx::ArrayRef >, unsigned int))[3]’: /<>/src/gromacs/mdtypes/state.cpp:209:7: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 rvec *makeRvecArray(gmx::ArrayRef v, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/mdtypes/state.h:59, from /<>/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/mdtypes/state.h:59, from /<>/src/gromacs/mdtypes/state.cpp:40: /usr/include/c++/7/bits/stl_vector.h: In function ‘void init_gtc_state(t_state*, int, int, int)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<>/src/gromacs/tables/forcetable.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<>/src/gromacs/tables/quadraticsplinetable.cpp /<>/src/gromacs/pbcutil/pbc.cpp: In function ‘void put_atoms_in_box(int, const real (*)[3], gmx::ArrayRef >)’: /<>/src/gromacs/pbcutil/pbc.cpp:1416:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void put_atoms_in_box(int ePBC, const matrix box, gmx::ArrayRef x) ^~~~~~~~~~~~~~~~ /<>/src/gromacs/pbcutil/pbc.cpp: In function ‘void put_atoms_in_triclinic_unitcell(int, const real (*)[3], gmx::ArrayRef >)’: /<>/src/gromacs/pbcutil/pbc.cpp:1476:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void put_atoms_in_triclinic_unitcell(int ecenter, const matrix box, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/pbcutil/pbc.cpp: In function ‘void put_atoms_in_compact_unitcell(int, int, const real (*)[3], gmx::ArrayRef >)’: /<>/src/gromacs/pbcutil/pbc.cpp:1534:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void put_atoms_in_compact_unitcell(int ePBC, int ecenter, const matrix box, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<>/src/gromacs/tables/splineutil.cpp /<>/src/gromacs/tables/cubicsplinetable.cpp: In constructor ‘gmx::CubicSplineTable::CubicSplineTable(std::initializer_list, const std::pair&, real)’: /<>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 CubicSplineTable::CubicSplineTable(std::initializer_list numericalInputList, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/cubicsplinetable.cpp:397:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 /<>/src/gromacs/tables/splineutil.cpp: In function ‘real gmx::internal::findSmallestQuotientOfFunctionAndSecondDerivative(gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:210:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 findSmallestQuotientOfFunctionAndSecondDerivative(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<>/src/gromacs/timing/cyclecounter.cpp /<>/src/gromacs/tables/splineutil.cpp: In function ‘real gmx::internal::findSmallestQuotientOfFunctionAndThirdDerivative(gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:287:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 findSmallestQuotientOfFunctionAndThirdDerivative(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/quadraticsplinetable.cpp: In constructor ‘gmx::QuadraticSplineTable::QuadraticSplineTable(std::initializer_list, const std::pair&, real)’: /<>/src/gromacs/tables/quadraticsplinetable.cpp:361:1: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 QuadraticSplineTable::QuadraticSplineTable(std::initializer_list numericalInputList, ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/quadraticsplinetable.cpp:170:100: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 std::vector thirdDerivative(internal::vectorSecondDerivative(derivative, inputSpacing)); ^ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<>/src/gromacs/timing/wallcycle.cpp /<>/src/gromacs/tables/splineutil.cpp: In function ‘void gmx::internal::throwUnlessDerivativeIsConsistentWithFunction(gmx::ArrayRef, gmx::ArrayRef, double, const std::pair&)’: /<>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 throwUnlessDerivativeIsConsistentWithFunction(ArrayRef function, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/splineutil.cpp:111:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/tables/splineutil.cpp: In function ‘std::vector gmx::internal::vectorSecondDerivative(gmx::ArrayRef, double)’: /<>/src/gromacs/tables/splineutil.cpp:306:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 vectorSecondDerivative(ArrayRef f, double spacing) ^~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<>/src/gromacs/timing/walltime_accounting.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<>/src/gromacs/topology/atomprop.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<>/src/gromacs/topology/atoms.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<>/src/gromacs/topology/atomsbuilder.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<>/src/gromacs/topology/block.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<>/src/gromacs/topology/idef.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<>/src/gromacs/topology/ifunc.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<>/src/gromacs/topology/index.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<>/src/gromacs/topology/invblock.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<>/src/gromacs/topology/mtop_util.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /<>/src/gromacs/topology/residuetypes.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /<>/src/gromacs/topology/symtab.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /<>/src/gromacs/topology/topology.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /<>/src/gromacs/topology/topsort.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /<>/src/gromacs/utility/alignedallocator.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /<>/src/gromacs/utility/basenetwork.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /<>/src/gromacs/utility/baseversion.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /<>/src/gromacs/utility/binaryinformation.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /<>/src/gromacs/utility/compare.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /<>/src/gromacs/utility/coolstuff.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /<>/src/gromacs/utility/cstringutil.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /<>/src/gromacs/utility/datafilefinder.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /<>/src/gromacs/utility/directoryenumerator.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /<>/src/gromacs/utility/errorcodes.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /<>/src/gromacs/utility/errorformat.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<>/src/gromacs/fileio/checkpoint.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<>/src/gromacs/fileio/filetypes.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<>/src/gromacs/fileio/g96io.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<>/src/gromacs/fileio/pdbio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<>/src/gromacs/fileio/readinp.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<>/src/gromacs/fileio/timecontrol.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/fileio/tngio.cpp:46: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/fileio/tngio.cpp:46: /usr/include/c++/7/bits/stl_vector.h: In function ‘void gmx_tng_add_mtop(gmx_tng_trajectory_t, const gmx_mtop_t*)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/biasparams.h:53, from /<>/src/gromacs/awh/biasparams.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::BiasParams::BiasParams(const gmx::AwhParams&, const gmx::AwhBiasParams&, const std::vector&, double, double, gmx::BiasParams::DisableUpdateSkips, int, const std::vector&, int)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp /<>/src/gromacs/awh/bias.cpp: In member function ‘void gmx::Bias::updateForceCorrelationGrid(gmx::ArrayRef, double)’: /<>/src/gromacs/awh/bias.cpp:376:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void Bias::updateForceCorrelationGrid(gmx::ArrayRef probWeightNeighbor, ^~~~ /<>/src/gromacs/awh/bias.cpp:397:45: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 state_.calcUmbrellaForceAndPotential(dimParams_, grid_, indexNeighbor, forceFromNeighbor); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/src/gromacs/awh/bias.cpp:68:0: /<>/src/gromacs/awh/correlationgrid.h:107:41: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 tensors_[pointIndex].addData(weight, data, blockLengthMeasure == BlockLengthMeasure::Weight, t); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp: In member function ‘gmx::ArrayRef gmx::Bias::calcForceAndUpdateBias(const double*, double*, double*, const t_commrec*, const gmx_multisim_t*, double, gmx_int64_t, gmx_int64_t, FILE*)’: /<>/src/gromacs/awh/bias.cpp:142:39: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 updateForceCorrelationGrid(probWeightNeighbor, t); ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 state_.calcConvolvedForce(dimParams_, grid_, probWeightNeighbor, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tempForce_, biasForce_); ~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:160:34: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:170:19: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 potential = ~~~~~~~~~~^ state_.calcUmbrellaForceAndPotential(dimParams_, grid_, coordState.umbrellaGridpoint(), biasForce_); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double newPotential = state_.moveUmbrella(dimParams_, grid_, probWeightNeighbor, biasForce_, step, seed, params_.biasIndex); ^ /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/bias.cpp:180:135: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/awh.h:69, from /<>/src/gromacs/awh/awh.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::Bias, std::vector >&}; _Tp = gmx::BiasCoupledToSystem; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::Awh::Awh(FILE*, const t_inputrec&, const t_commrec*, const gmx::AwhParams&, const string&, pull_t*)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In function ‘void gmx::{anonymous}::updateTargetDistribution(gmx::ArrayRef, const gmx::BiasParams&)’: /<>/src/gromacs/awh/biasstate.cpp:294:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void updateTargetDistribution(gmx::ArrayRef pointState, ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/coordstate.cpp: In member function ‘void gmx::CoordState::sampleUmbrellaGridpoint(const gmx::Grid&, int, gmx::ArrayRef, gmx_int64_t, gmx_int64_t, int)’: /<>/src/gromacs/awh/coordstate.cpp:131:1: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 CoordState::sampleUmbrellaGridpoint(const Grid &grid, ^~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘double gmx::BiasState::calcUmbrellaForceAndPotential(const std::vector&, const gmx::Grid&, int, gmx::ArrayRef) const’: /<>/src/gromacs/awh/biasstate.cpp:424:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double BiasState::calcUmbrellaForceAndPotential(const std::vector &dimParams, ^~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::calcConvolvedForce(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx::ArrayRef) const’: /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::calcConvolvedForce(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:444:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp: In member function ‘double gmx::BiasState::moveUmbrella(const std::vector&, const gmx::Grid&, gmx::ArrayRef, gmx::ArrayRef, gmx_int64_t, gmx_int64_t, int)’: /<>/src/gromacs/awh/biasstate.cpp:475:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double BiasState::moveUmbrella(const std::vector &dimParams, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp:475:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:484:40: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 coordState_.sampleUmbrellaGridpoint(grid, coordState_.gridpointIndex(), probWeightNeighbor, step, seed, indexSeed); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp /<>/src/gromacs/awh/biasstate.cpp:484:40: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::sampleProbabilityWeights(const gmx::Grid&, gmx::ArrayRef)’: /<>/src/gromacs/awh/biasstate.cpp:1232:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::sampleProbabilityWeights(const Grid &grid, ^~~~~~~~~ /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::sampleCoordAndPmf(const gmx::Grid&, gmx::ArrayRef, double)’: /<>/src/gromacs/awh/biasstate.cpp:1287:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void BiasState::sampleCoordAndPmf(const Grid &grid, ^~~~~~~~~ /<>/src/gromacs/awh/correlationtensor.cpp: In member function ‘void gmx::CorrelationTensor::addData(double, gmx::ArrayRef, bool, double)’: /<>/src/gromacs/awh/correlationtensor.cpp:226:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void CorrelationTensor::addData(double weight, ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/correlationtensor.h:51, from /<>/src/gromacs/awh/correlationtensor.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::CorrelationBlockData}; _Tp = gmx::CorrelationBlockData; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::CorrelationTensor::CorrelationTensor(int, int, double)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp /<>/src/gromacs/awh/biasstate.cpp: In member function ‘void gmx::BiasState::updateFreeEnergyAndAddSamplesToHistogram(const std::vector&, const gmx::Grid&, const gmx::BiasParams&, const t_commrec*, const gmx_multisim_t*, double, gmx_int64_t, FILE*, std::vector*)’: /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double newHistogramSize = histogramSize_.newHistogramSize(params, t, detectedCovering, points_, weightSumCovering_, fplog); ^ /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/awh/biasstate.cpp:1075:126: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp /<>/src/gromacs/awh/histogramsize.cpp: In member function ‘double gmx::HistogramSize::newHistogramSizeInitialStage(const gmx::BiasParams&, double, bool, gmx::ArrayRef, FILE*)’: /<>/src/gromacs/awh/histogramsize.cpp:78:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double HistogramSize::newHistogramSizeInitialStage(const BiasParams ¶ms, ^~~~~~~~~~~~~ /<>/src/gromacs/awh/histogramsize.cpp: In member function ‘double gmx::HistogramSize::newHistogramSize(const gmx::BiasParams&, double, bool, const std::vector&, gmx::ArrayRef, FILE*)’: /<>/src/gromacs/awh/histogramsize.cpp:210:8: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 double HistogramSize::newHistogramSize(const BiasParams ¶ms, ^~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/dimparams.h:52, from /<>/src/gromacs/awh/grid.h:60, from /<>/src/gromacs/awh/grid.cpp:47: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::GridAxis}; _Tp = gmx::GridAxis; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In function ‘void gmx::mapGridToDataGrid(std::vector*, const double* const*, int, const string&, const gmx::Grid&, const string&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::Grid::Grid(const std::vector&, const gmx::AwhDimParams*)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<>/src/gromacs/gmxlib/chargegroup.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<>/src/gromacs/gmxlib/conformation-utilities.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<>/src/gromacs/gmxlib/network.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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-I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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/<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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/<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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/<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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/<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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/<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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/<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<>/src/gromacs/mdlib/broadcaststructs.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/calc_verletbuf.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp /<>/src/gromacs/mdlib/calcmu.cpp: In function ‘void calc_mu(int, int, gmx::ArrayRef >, real*, real*, int, double*, double*)’: /<>/src/gromacs/mdlib/calcmu.cpp:50:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void calc_mu(int start, int homenr, gmx::ArrayRef x, real q[], real qB[], ^~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<>/src/gromacs/mdlib/compute_io.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<>/src/gromacs/mdlib/constr.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<>/src/gromacs/mdlib/force.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<>/src/gromacs/mdlib/forcerec.cpp /<>/src/gromacs/mdlib/force.cpp: In function ‘void sum_dhdl(gmx_enerdata_t*, gmx::ArrayRef, t_lambda*)’: /<>/src/gromacs/mdlib/force.cpp:724:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 void sum_dhdl(gmx_enerdata_t *enerd, gmx::ArrayRef lambda, t_lambda *fepvals) ^~~~~~~~ /<>/src/gromacs/mdlib/force.cpp:724:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<>/src/gromacs/mdlib/genborn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp /<>/src/gromacs/mdlib/mdoutf.cpp: In function ‘void mdoutf_write_to_trajectory_files(FILE*, t_commrec*, gmx_mdoutf_t, int, gmx_mtop_t*, gmx_int64_t, double, t_state*, t_state*, ObservablesHistory*, gmx::ArrayRef >)’: /<>/src/gromacs/mdlib/mdoutf.cpp:247:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void mdoutf_write_to_trajectory_files(FILE *fplog, t_commrec *cr, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdoutf.cpp:269:31: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(cr->dd, state_local, state_local->x, globalXRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdoutf.cpp:274:31: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(cr->dd, state_local, state_local->v, globalVRef); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdoutf.cpp:280:27: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 dd_collect_vec(cr->dd, state_local, f_local, gmx::arrayRefFromArray(reinterpret_cast(f_global), f_local.size())); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_grid.cpp /<>/src/gromacs/mdlib/minimize.cpp: In function ‘void write_em_traj(FILE*, t_commrec*, gmx_mdoutf_t, gmx_bool, gmx_bool, const char*, gmx_mtop_t*, t_inputrec*, gmx_int64_t, em_state_t*, t_state*, ObservablesHistory*)’: /<>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, step, (double)step, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &state->s, state_global, observablesHistory, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->f); ~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp: In function ‘void evaluate_energy(FILE*, t_commrec*, gmx_mtop_t*, em_state_t*, gmx_localtop_t*, t_inputrec*, t_nrnb*, gmx_wallcycle_t, gmx_global_stat_t, gmx_vsite_t*, gmx_constr_t, t_fcdata*, t_graph*, gmx::MDAtoms*, t_forcerec*, real*, gmx_enerdata_t*, real (*)[3], real (*)[3], gmx_int64_t, gmx_bool)’: /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ count, nrnb, wcycle, top, &top_global->groups, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->s.box, ems->s.x, &ems->s.hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->f, force_vir, mdAtoms->mdatoms(), enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->s.lambda, graph, fr, vsite, mu_tot, t, nullptr, TRUE, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bNS ? GMX_FORCE_NS : 0), ~~~~~~~~~~~~~~~~~~~~~~~~~ DOMAINDECOMP(cr) ? ~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::yes : ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::no, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DOMAINDECOMP(cr) ? ~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::yes : ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::no); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp:848:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp: In function ‘void evaluate_energy(FILE*, t_commrec*, gmx_mtop_t*, em_state_t*, gmx_localtop_t*, t_inputrec*, t_nrnb*, gmx_wallcycle_t, gmx_global_stat_t, gmx_vsite_t*, gmx_constr_t, t_fcdata*, t_graph*, gmx::MDAtoms*, t_forcerec*, real*, gmx_enerdata_t*, real (*)[3], real (*)[3], gmx_int64_t, gmx_bool)’: /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ count, nrnb, wcycle, top, &top_global->groups, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->s.box, ems->s.x, &ems->s.hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->f, force_vir, mdAtoms->mdatoms(), enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ems->s.lambda, graph, fr, vsite, mu_tot, t, nullptr, TRUE, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_STATECHANGED | GMX_FORCE_ALLFORCES | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_VIRIAL | GMX_FORCE_ENERGY | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bNS ? GMX_FORCE_NS : 0), ~~~~~~~~~~~~~~~~~~~~~~~~~ DOMAINDECOMP(cr) ? ~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::yes : ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::no, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DOMAINDECOMP(cr) ? ~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::yes : ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::no); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp:779:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/minimize.cpp:848:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 sum_dhdl(enerd, ems->s.lambda, inputrec->fepvals); ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp: In function ‘void init_em(FILE*, const char*, t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const MdrunOptions&, t_state*, gmx_mtop_t*, em_state_t*, gmx_localtop_t**, t_nrnb*, real*, t_forcerec*, gmx_enerdata_t**, t_graph**, gmx::MDAtoms*, gmx_global_stat**, gmx_vsite_t*, gmx_constr_t, gmx_shellfc_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, gmx_wallcycle_t)’: /<>/src/gromacs/mdlib/minimize.cpp:350:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 initialize_lambdas(fplog, ir, &(state_global->fep_state), state_global->lambda, nullptr); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp:350:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_search.cpp /<>/src/gromacs/mdlib/minimize.cpp: In function ‘double gmx::do_lbfgs(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/gromacs/mdlib/minimize.cpp:1883:41: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, step, (real)step, &ems.s, state_global, observablesHistory, ems.f); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_tuning.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<>/src/gromacs/mdlib/ns.cpp /<>/src/gromacs/mdlib/minimize.cpp: In function ‘double gmx::do_cg(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, step, (double)step, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &state->s, state_global, observablesHistory, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->f); ~~~~~~~~~ /<>/src/gromacs/mdlib/minimize.cpp: In function ‘double gmx::do_steep(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/gromacs/mdlib/minimize.cpp:531:37: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top_global, step, (double)step, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &state->s, state_global, observablesHistory, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->f); ~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<>/src/gromacs/mdlib/perf_est.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<>/src/gromacs/mdlib/qm_gamess.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<>/src/gromacs/mdlib/qm_gaussian.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<>/src/gromacs/mdlib/qm_mopac.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<>/src/gromacs/mdlib/qmmm.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<>/src/gromacs/mdlib/rbin.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /<>/src/gromacs/mdlib/rf_util.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<>/src/gromacs/mdlib/shakef.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<>/src/gromacs/mdlib/shellfc.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<>/src/gromacs/mdlib/sighandler.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<>/src/gromacs/mdlib/sim_util.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/simulationsignal.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<>/src/gromacs/mdlib/splitter.cpp /<>/src/gromacs/mdlib/shellfc.cpp: In function ‘void relax_shell_flexcon(FILE*, t_commrec*, gmx_bool, gmx_int64_t, t_inputrec*, gmx_bool, int, gmx_localtop_t*, gmx_constr_t, gmx_enerdata_t*, t_fcdata*, t_state*, gmx::PaddedRVecVector*, real (*)[3], t_mdatoms*, t_nrnb*, gmx_wallcycle_t, t_graph*, gmx_groups_t*, gmx_shellfc_t*, t_forcerec*, gmx_bool, double, real*, gmx_vsite_t*, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)’: /<>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, mdstep, nrnb, wcycle, top, groups, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->box, state->x, &state->hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ force[Min], force_vir, md, enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state->lambda, graph, ~~~~~~~~~~~~~~~~~~~~~ fr, vsite, mu_tot, t, nullptr, bBornRadii, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bDoNS ? GMX_FORCE_NS : 0) | force_flags, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ddOpenBalanceRegion, ddCloseBalanceRegion); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/shellfc.cpp:1120:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, 1, nrnb, wcycle, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ top, groups, state->box, pos[Try], &state->hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ force[Try], force_vir, ~~~~~~~~~~~~~~~~~~~~~~ md, enerd, fcd, state->lambda, graph, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fr, vsite, mu_tot, t, nullptr, bBornRadii, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ force_flags, ~~~~~~~~~~~~ ddOpenBalanceRegion, ddCloseBalanceRegion); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/shellfc.cpp:1223:17: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<>/src/gromacs/mdlib/stat.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void do_force_cutsVERLET(FILE*, t_commrec*, t_inputrec*, gmx_int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, gmx_groups_t*, real (*)[3], gmx::PaddedArrayRef >, history_t*, gmx::PaddedArrayRef >, real (*)[3], t_mdatoms*, gmx_enerdata_t*, t_fcdata*, real*, t_graph*, t_forcerec*, interaction_const_t*, gmx_vsite_t*, real*, double, gmx_edsam_t, gmx_bool, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)’: /<>/src/gromacs/mdlib/sim_util.cpp:1042:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 static void do_force_cutsVERLET(FILE *fplog, t_commrec *cr, ^~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:1042:13: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<>/src/gromacs/mdlib/tgroup.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void do_force(FILE*, t_commrec*, t_inputrec*, gmx_int64_t, t_nrnb*, gmx_wallcycle_t, gmx_localtop_t*, gmx_groups_t*, real (*)[3], gmx::PaddedArrayRef >, history_t*, gmx::PaddedArrayRef >, real (*)[3], t_mdatoms*, gmx_enerdata_t*, t_fcdata*, gmx::ArrayRef, t_graph*, t_forcerec*, gmx_vsite_t*, real*, double, gmx_edsam_t, gmx_bool, int, DdOpenBalanceRegionBeforeForceComputation, DdCloseBalanceRegionAfterForceComputation)’: /<>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 void do_force(FILE *fplog, t_commrec *cr, ^~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp:2089:6: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp:2120:32: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force_cutsVERLET(fplog, cr, inputrec, ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ step, nrnb, wcycle, ~~~~~~~~~~~~~~~~~~~ top, ~~~~ groups, ~~~~~~~ box, x, hist, ~~~~~~~~~~~~~ force, vir_force, ~~~~~~~~~~~~~~~~~ mdatoms, ~~~~~~~~ enerd, fcd, ~~~~~~~~~~~ lambda.data(), graph, ~~~~~~~~~~~~~~~~~~~~~ fr, fr->ic, ~~~~~~~~~~~ vsite, mu_tot, ~~~~~~~~~~~~~~ t, ed, ~~~~~~ bBornRadii, ~~~~~~~~~~~ flags, ~~~~~~ ddOpenBalanceRegion, ~~~~~~~~~~~~~~~~~~~~ ddCloseBalanceRegion); ~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2120:32: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void put_atoms_in_box_omp(int, const real (*)[3], gmx::ArrayRef >)’: /<>/src/gromacs/mdlib/sim_util.cpp:2684:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void put_atoms_in_box_omp(int ePBC, const matrix box, gmx::ArrayRef x) ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void initialize_lambdas(FILE*, t_inputrec*, int*, gmx::ArrayRef, double*)’: /<>/src/gromacs/mdlib/sim_util.cpp:2834:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 extern void initialize_lambdas(FILE *fplog, t_inputrec *ir, int *fep_state, gmx::ArrayRef lambda, double *lam0) ^~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2834:13: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void init_md(FILE*, t_commrec*, gmx::IMDOutputProvider*, t_inputrec*, const gmx_output_env_t*, const MdrunOptions&, double*, double*, t_state*, double*, t_nrnb*, gmx_mtop_t*, gmx_update_t**, int, const t_filenm*, gmx_mdoutf**, t_mdebin**, real (*)[3], real (*)[3], real*, gmx_bool*, t_vcm**, gmx_wallcycle_t)’: /<>/src/gromacs/mdlib/sim_util.cpp:2931:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 initialize_lambdas(fplog, ir, &globalState->fep_state, globalState->lambda, lam0); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2931:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/sim_util.cpp:2937:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 initialize_lambdas(fplog, ir, &tmpFepState, tmpLambda, lam0); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/sim_util.cpp:2937:27: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<>/src/gromacs/mdlib/tpi.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<>/src/gromacs/mdlib/trajectory_writing.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp /<>/src/gromacs/mdlib/trajectory_writing.cpp: In function ‘void do_md_trajectory_writing(FILE*, t_commrec*, int, const t_filenm*, gmx_int64_t, gmx_int64_t, double, t_inputrec*, t_state*, t_state*, ObservablesHistory*, gmx_mtop_t*, t_forcerec*, gmx_mdoutf_t, t_mdebin*, gmx_ekindata_t*, gmx::ArrayRef >, int*, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool)’: /<>/src/gromacs/mdlib/trajectory_writing.cpp:55:1: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 do_md_trajectory_writing(FILE *fplog, ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/trajectory_writing.cpp:148:41: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 mdoutf_write_to_trajectory_files(fplog, cr, outf, mdof_flags, top_global, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ step, t, state, state_global, observablesHistory, f); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/trajectory_writing.cpp:148:41: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp /<>/src/gromacs/mdlib/tpi.cpp: In function ‘double gmx::do_tpi(FILE*, t_commrec*, const gmx::MDLogger&, int, const t_filenm*, const gmx_output_env_t*, const MdrunOptions&, gmx_vsite_t*, gmx_constr_t, gmx::IMDOutputProvider*, t_inputrec*, gmx_mtop_t*, t_fcdata*, t_state*, ObservablesHistory*, gmx::MDAtoms*, t_nrnb*, gmx_wallcycle_t, t_forcerec*, const ReplicaExchangeParameters&, gmx_membed_t*, gmx_walltime_accounting_t)’: /<>/src/gromacs/mdlib/tpi.cpp:663:21: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 do_force(fplog, cr, inputrec, ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ step, nrnb, wcycle, top, &top_global->groups, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state_global->box, state_global->x, &state_global->hist, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f, force_vir, mdatoms, enerd, fcd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ state_global->lambda, ~~~~~~~~~~~~~~~~~~~~~ nullptr, fr, nullptr, mu_tot, t, nullptr, FALSE, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GMX_FORCE_NONBONDED | GMX_FORCE_ENERGY | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bNS ? GMX_FORCE_DYNAMICBOX | GMX_FORCE_NS : 0) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (bStateChanged ? GMX_FORCE_STATECHANGED : 0), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdOpenBalanceRegionBeforeForceComputation::no, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DdCloseBalanceRegionAfterForceComputation::no); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/tpi.cpp:663:21: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 /<>/src/gromacs/mdlib/tpi.cpp:663:21: note: parameter passing for argument of type ‘gmx::ArrayRef’ changed in GCC 7.1 /<>/src/gromacs/mdlib/update.cpp: In function ‘void update_constraints(FILE*, gmx_int64_t, real*, t_inputrec*, t_mdatoms*, t_state*, gmx_bool, t_graph*, gmx::PaddedArrayRef >, t_idef*, real (*)[3], t_commrec*, t_nrnb*, gmx_wallcycle_t, gmx_update_t*, gmx_constr_t, gmx_bool, gmx_bool)’: /<>/src/gromacs/mdlib/update.cpp:1555:6: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 void update_constraints(FILE *fplog, ^~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/update.cpp: In function ‘void update_coords(FILE*, gmx_int64_t, t_inputrec*, t_mdatoms*, t_state*, gmx::PaddedArrayRef >, t_fcdata*, gmx_ekindata_t*, real (*)[3], gmx_update_t*, int, t_commrec*, gmx_constr_t)’: /<>/src/gromacs/mdlib/update.cpp:1889:6: note: parameter passing for argument of type ‘gmx::PaddedArrayRef > {aka gmx::ArrayRef >}’ changed in GCC 7.1 void update_coords(FILE *fplog, ^~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<>/src/gromacs/mdlib/vsite.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<>/src/gromacs/mdlib/wall.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<>/src/gromacs/mdlib/wnblist.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/electricfield.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<>/src/gromacs/fft/calcgrid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<>/src/gromacs/fft/fft.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<>/src/gromacs/fft/fft5d.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<>/src/gromacs/fft/parallel_3dfft.cpp /<>/src/gromacs/mdlib/vsite.cpp: In function ‘void constructVsitesGlobal(const gmx_mtop_t&, gmx::ArrayRef >)’: /<>/src/gromacs/mdlib/vsite.cpp:765:6: note: parameter passing for argument of type ‘gmx::ArrayRef >’ changed in GCC 7.1 void constructVsitesGlobal(const gmx_mtop_t &mtop, ^~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<>/src/gromacs/fft/fft_fftw3.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/mdlib/vsite.h:43, from /<>/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = gmx::BasicVector; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/utility/arrayref.h:52, from /<>/src/gromacs/mdlib/vsite.h:43, from /<>/src/gromacs/mdlib/vsite.cpp:39: /usr/include/c++/7/bits/stl_vector.h: In function ‘_Z25split_vsites_over_threadsPK7t_ilistPK9t_iparamsPK9t_mdatomsP11gmx_vsite_t._omp_fn.3’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/hostallocator.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<>/src/gromacs/gpu_utils/gpu_utils.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /<>/src/gromacs/hardware/cpuinfo.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /<>/src/gromacs/hardware/detecthardware.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<>/src/gromacs/hardware/gpu_hw_info.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/hardwaretopology.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /<>/src/gromacs/hardware/printhardware.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /<>/src/gromacs/hardware/identifyavx512fmaunits.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /<>/src/gromacs/mdrunutility/handlerestart.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<>/src/gromacs/mdrunutility/mdmodules.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/threadaffinity.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /<>/src/gromacs/options/abstractoption.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /<>/src/gromacs/options/abstractsection.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /<>/src/gromacs/options/basicoptions.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<>/src/gromacs/options/behaviorcollection.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /<>/src/gromacs/options/filenameoption.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/filenameoptionmanager.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<>/src/gromacs/options/options.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<>/src/gromacs/options/optionsassigner.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<>/src/gromacs/options/optionsection.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /<>/src/gromacs/options/optionsvisitor.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /<>/src/gromacs/options/timeunitmanager.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<>/src/gromacs/options/treesupport.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /<>/src/gromacs/taskassignment/decidegpuusage.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /<>/src/gromacs/taskassignment/findallgputasks.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/options/basicoptions.h:50, from /<>/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/options/basicoptions.h:50, from /<>/src/gromacs/options/basicoptions.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::DoubleOptionStorage::processSetValues(gmx::OptionStorageTemplate::ValueList*)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<>/src/gromacs/taskassignment/reportgpuusage.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<>/src/gromacs/taskassignment/resourcedivision.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<>/src/gromacs/taskassignment/taskassignment.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/usergpuids.cpp cd /<>/build/mpich-dp/src/gromacs && 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<>/src/external/thread_mpi/src/atomic.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -isystem /<>/src/external/lmfit -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /<>/src/external/thread_mpi/src/lock.c cd /<>/build/mpich-dp/src/gromacs && 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directory '/<>/build/mpich-dp' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich-dp /<>/build/mpich-dp/src/programs /<>/build/mpich-dp/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /<>/src/programs/mdrun_main.cpp cd /<>/build/mpich-dp/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../bin/mdrun_mpi_d.mpich ../../lib/libgromacs_mdrun_mpi_d.mpich.a -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lpthread -lm make[3]: Leaving directory '/<>/build/mpich-dp' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/mpich-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/mpich-dp/CMakeFiles 0 make[1]: Leaving directory '/<>/build/mpich-dp' sed -e 's/#MPIABBR#/mpich/g' -e 's/#MPIPROG#/MPICH/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-mpich.README.Debian /usr/bin/make -j4 -C build/mpich tests make[1]: Entering directory '/<>/build/mpich' /usr/bin/cmake -H/<> -B/<>/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests make[2]: Entering directory '/<>/build/mpich' /usr/bin/cmake -H/<> -B/<>/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles 98 /usr/bin/make -f 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'/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/mpich /<>/build/mpich/src/gromacs/mdrunutility/tests /<>/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/mpich /<>/build/mpich/src/gromacs/onlinehelp/tests /<>/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/<>/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/mpich' Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/mpich' [ 3%] Built target tng_io_obj /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/<>/build/mpich' make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp Scanning dependencies of target gmock make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/external/gmock-1.7.0 && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/mpich' [ 80%] Built target libgromacs cd /<>/build/mpich/src/external/gmock-1.7.0 && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc make[4]: Leaving directory '/<>/build/mpich' [ 80%] Built target onlinehelp-test-shared make[4]: Leaving directory '/<>/build/mpich' [ 81%] Built target mdrunutility-test-shared cd /<>/build/mpich/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/mpich/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/mpich' [ 81%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/mpich /<>/build/mpich/src/testutils /<>/build/mpich/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/mpich/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/mpich/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/mpich' [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/mpich /<>/build/mpich/src/gromacs/compat/tests /<>/build/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/mpich /<>/build/mpich/src/testutils/tests /<>/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/mpich /<>/build/mpich/src/testutils/tests /<>/build/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/mpich /<>/build/mpich/src/gromacs/mdlib/tests /<>/build/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp Scanning dependencies of target testutils-test make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp Scanning dependencies of target mdlib-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 84%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/mpich /<>/build/mpich/src/gromacs/applied-forces/tests /<>/build/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Leaving directory '/<>/build/mpich' [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/mpich /<>/build/mpich/src/gromacs/listed-forces/tests /<>/build/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/mpich' [ 85%] Built target listed-forces-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/mpich /<>/build/mpich/src/gromacs/commandline/tests /<>/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /<>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 85%] Built target applied-forces-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/mpich /<>/build/mpich/src/gromacs/ewald/tests /<>/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 85%] Built target testutils-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/mpich /<>/build/mpich/src/gromacs/fft/tests /<>/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/mpich' [ 86%] Built target mdlib-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/mpich /<>/build/mpich/src/gromacs/gpu_utils/tests /<>/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp cd /<>/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp make[4]: Leaving directory '/<>/build/mpich' [ 86%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/mpich /<>/build/mpich/src/gromacs/hardware/tests /<>/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /<>/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 86%] Built target hardware-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/mpich /<>/build/mpich/src/gromacs/math/tests /<>/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp make[4]: Leaving directory '/<>/build/mpich' [ 87%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/mpich /<>/build/mpich/src/gromacs/mdrunutility/tests /<>/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 87%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/mpich /<>/build/mpich/src/gromacs/mdrunutility/tests /<>/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/mpich' [ 87%] Built target math-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/mpich /<>/build/mpich/src/gromacs/onlinehelp/tests /<>/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/mpich' [ 87%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/mpich /<>/build/mpich/src/gromacs/options/tests /<>/build/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp make[4]: Leaving directory '/<>/build/mpich' [ 88%] Built target commandline-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/mpich /<>/build/mpich/src/gromacs/random/tests /<>/build/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp make[4]: Leaving directory '/<>/build/mpich' [ 89%] Built target ewald-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/mpich /<>/build/mpich/src/gromacs/tables/tests /<>/build/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, ^~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_NumericalInputPmeCorr_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:517:16: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 TypeParam pmeCorrTable( {{"NumericalPMECorr", functionValues, derivativeValues, inputSpacing}}, ^~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::QuadraticSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp: In member function ‘void gmx::test::{anonymous}::SplineTableTest_HandlesIncorrectNumericalInput_Test::TestBody() [with gtest_TypeParam_ = gmx::CubicSplineTable]’: /<>/src/gromacs/tables/tests/splinetable.cpp:461:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:461:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.001}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:467:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"EmptyVectors", functionValues, derivativeValues, 0.1}}, ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:56, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/src/external/gmock-1.7.0/gtest/include/gtest/gtest.h:58:0, from /<>/src/gromacs/tables/tests/splinetable.cpp:50: /<>/src/gromacs/tables/tests/splinetable.cpp:489:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:489:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalBadLJ12", functionValues, badDerivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:22: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^ /<>/src/testutils/testasserts.h:176:5: note: in expansion of macro ‘GMX_TEST_THROW_’ GMX_TEST_THROW_(statement, expected_exception, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~ /<>/src/gromacs/tables/tests/splinetable.cpp:494:5: note: in expansion of macro ‘EXPECT_THROW_GMX’ EXPECT_THROW_GMX(TypeParam( {{"NumericalLJ12", functionValues, derivativeValues, spacing}}, ^~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp make[4]: Leaving directory '/<>/build/mpich' [ 90%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/mpich /<>/build/mpich/src/gromacs/taskassignment/tests /<>/build/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp cd /<>/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp make[4]: Leaving directory '/<>/build/mpich' [ 91%] Built target table-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/mpich /<>/build/mpich/src/gromacs/utility/tests /<>/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp cd /<>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 91%] Built target taskassignment-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/mpich /<>/build/mpich/src/gromacs/fileio/tests /<>/build/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/random/tabulatednormaldistribution.h:52, from /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::{anonymous}::TabulatedNormalDistributionTest_OutputDouble14_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp In file included from /usr/include/c++/7/vector:64:0, from /usr/include/c++/7/bits/random.h:34, from /usr/include/c++/7/random:49, from /<>/src/gromacs/random/seed.h:51, from /<>/src/gromacs/random/threefry.h:51, from /<>/src/gromacs/random/tests/threefry.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_vector.h:383:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 vector(initializer_list __l, ^~~~~~ cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp /<>/src/gromacs/random/tests/threefry.cpp: In function ‘(static initializers for /<>/src/gromacs/random/tests/threefry.cpp)’: /<>/src/gromacs/random/tests/threefry.cpp:119:44: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ /<>/src/gromacs/random/tests/threefry.cpp:131:43: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ /<>/src/gromacs/random/tests/threefry.cpp:142:42: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 }}; ^ cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp make[4]: Leaving directory '/<>/build/mpich' [ 92%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/mpich /<>/build/mpich/src/gromacs/pulling/tests /<>/build/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp cd /<>/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp cd /<>/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 92%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/mpich /<>/build/mpich/src/gromacs/awh/tests /<>/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual void gmx::test::BiasTest_ForcesBiasPmf_Test::TestBody()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[4]: Leaving directory '/<>/build/mpich' [ 94%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/mpich /<>/build/mpich/src/gromacs/simd/tests /<>/build/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/bias.h:55, from /<>/src/gromacs/awh/tests/bias.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘testing::Test* testing::internal::ParameterizedTestFactory::CreateTest() [with TestClass = gmx::test::BiasTest_ForcesBiasPmf_Test]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::test::BiasTest_DetectsCovering_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/biasstate.h:57, from /<>/src/gromacs/awh/tests/biasstate.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 /usr/include/c++/7/bits/vector.tcc: In constructor ‘gmx::test::BiasStateTest::BiasStateTest()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/src/gromacs/awh/dimparams.h:52, from /<>/src/gromacs/awh/grid.h:60, from /<>/src/gromacs/awh/tests/grid.cpp:37: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gmx::DimParams}; _Tp = gmx::DimParams; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘virtual void gmx::test::gridTest_neighborhood_Test::TestBody()’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp make[4]: Leaving directory '/<>/build/mpich' [ 94%] Built target awh-test cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp make[4]: Leaving directory '/<>/build/mpich' [ 95%] Built target options-test cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp make[4]: Leaving directory '/<>/build/mpich' [ 97%] Built target simd-test cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -I/<>/build/mpich/src -isystem /<>/src/external/thread_mpi/include -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libhwloc.so -lrt /usr/lib/arm-linux-gnueabihf/libfftw3f.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [100%] Built target utility-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/mpich /<>/build/mpich /<>/build/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/mpich' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/mpich' [100%] Built target tests make[3]: Leaving directory '/<>/build/mpich' /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles 0 make[2]: Leaving directory '/<>/build/mpich' make[1]: Leaving directory '/<>/build/mpich' (cd build/mpich; LD_LIBRARY_PATH=/<>/build/mpich/lib ctest -V) UpdateCTestConfiguration from :/<>/build/mpich/DartConfiguration.tcl Parse Config file:/<>/build/mpich/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/mpich/DartConfiguration.tcl Parse Config file:/<>/build/mpich/DartConfiguration.tcl Test project /<>/build/mpich Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/mpich/bin/testutils-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1/24 Test #1: TestUtilsUnitTests ...............***Exception: SegFault 0.46 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.mpich "-np" "2" "/<>/build/mpich/bin/testutils-mpi-test" "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: 2: =================================================================================== 2: = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES 2: = PID 17555 RUNNING AT bos02-arm64-032 2: = EXIT CODE: 139 2: = CLEANING UP REMAINING PROCESSES 2: = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES 2: =================================================================================== 2: YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11) 2: This typically refers to a problem with your application. 2: Please see the FAQ page for debugging suggestions 2/24 Test #2: TestUtilsMpiUnitTests ............***Failed 0.48 sec =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 17555 RUNNING AT bos02-arm64-032 = EXIT CODE: 139 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11) This typically refers to a problem with your application. Please see the FAQ page for debugging suggestions test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/mpich/bin/mdlib-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3/24 Test #3: MdlibUnitTest ....................***Exception: SegFault 0.51 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/mpich/bin/applied-forces-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4/24 Test #4: AppliedForcesUnitTest ............***Exception: SegFault 0.50 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/mpich/bin/listed-forces-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5/24 Test #5: ListedForcesTest .................***Exception: SegFault 0.52 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/mpich/bin/commandline-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6/24 Test #6: CommandLineUnitTests .............***Exception: SegFault 0.51 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/mpich/bin/ewald-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7/24 Test #7: EwaldUnitTests ...................***Exception: SegFault 0.46 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/mpich/bin/fft-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8/24 Test #8: FFTUnitTests .....................***Exception: SegFault 0.48 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/mpich/bin/gpu_utils-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9/24 Test #9: GpuUtilsUnitTests ................***Exception: SegFault 0.47 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/mpich/bin/hardware-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10/24 Test #10: HardwareUnitTests ................***Exception: SegFault 0.44 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/mpich/bin/math-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11/24 Test #11: MathUnitTests ....................***Exception: SegFault 0.43 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/mpich/bin/mdrunutility-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12/24 Test #12: MdrunUtilityUnitTests ............***Exception: SegFault 0.47 sec test 13 Start 13: MdrunUtilityMpiUnitTests 13: Test command: /usr/bin/mpiexec.mpich "-np" "4" "/<>/build/mpich/bin/mdrunutility-mpi-test" "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 13: Test timeout computed to be: 30 13: 13: =================================================================================== 13: = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES 13: = PID 17582 RUNNING AT bos02-arm64-032 13: = EXIT CODE: 139 13: = CLEANING UP REMAINING PROCESSES 13: = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES 13: =================================================================================== 13: YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11) 13: This typically refers to a problem with your application. 13: Please see the FAQ page for debugging suggestions 13/24 Test #13: MdrunUtilityMpiUnitTests .........***Failed 0.53 sec =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 17582 RUNNING AT bos02-arm64-032 = EXIT CODE: 139 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11) This typically refers to a problem with your application. Please see the FAQ page for debugging suggestions test 14 Start 14: OnlineHelpUnitTests 14: Test command: /<>/build/mpich/bin/onlinehelp-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/OnlineHelpUnitTests.xml" 14: Test timeout computed to be: 30 14/24 Test #14: OnlineHelpUnitTests ..............***Exception: SegFault 0.46 sec test 15 Start 15: OptionsUnitTests 15: Test command: /<>/build/mpich/bin/options-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/OptionsUnitTests.xml" 15: Test timeout computed to be: 30 15/24 Test #15: OptionsUnitTests .................***Exception: SegFault 0.46 sec test 16 Start 16: RandomUnitTests 16: Test command: /<>/build/mpich/bin/random-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/RandomUnitTests.xml" 16: Test timeout computed to be: 30 16/24 Test #16: RandomUnitTests ..................***Exception: SegFault 0.51 sec test 17 Start 17: TableUnitTests 17: Test command: /<>/build/mpich/bin/table-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/TableUnitTests.xml" 17: Test timeout computed to be: 30 17/24 Test #17: TableUnitTests ...................***Exception: SegFault 0.46 sec test 18 Start 18: TaskAssignmentUnitTests 18: Test command: /<>/build/mpich/bin/taskassignment-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/TaskAssignmentUnitTests.xml" 18: Test timeout computed to be: 30 18/24 Test #18: TaskAssignmentUnitTests ..........***Exception: SegFault 0.47 sec test 19 Start 19: UtilityUnitTests 19: Test command: /<>/build/mpich/bin/utility-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/UtilityUnitTests.xml" 19: Test timeout computed to be: 30 19/24 Test #19: UtilityUnitTests .................***Exception: SegFault 0.48 sec test 20 Start 20: FileIOTests 20: Test command: /<>/build/mpich/bin/fileio-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/FileIOTests.xml" 20: Test timeout computed to be: 30 20/24 Test #20: FileIOTests ......................***Exception: SegFault 0.47 sec test 21 Start 21: PullTest 21: Test command: /<>/build/mpich/bin/pull-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/PullTest.xml" 21: Test timeout computed to be: 30 21/24 Test #21: PullTest .........................***Exception: SegFault 0.44 sec test 22 Start 22: AwhTest 22: Test command: /<>/build/mpich/bin/awh-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/AwhTest.xml" 22: Test timeout computed to be: 30 22/24 Test #22: AwhTest ..........................***Exception: SegFault 0.47 sec test 23 Start 23: SimdUnitTests 23: Test command: /<>/build/mpich/bin/simd-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/SimdUnitTests.xml" 23: Test timeout computed to be: 30 23/24 Test #23: SimdUnitTests ....................***Exception: SegFault 0.45 sec test 24 Start 24: CompatibilityHelpersTests 24: Test command: /<>/build/mpich/bin/compat-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/CompatibilityHelpersTests.xml" 24: Test timeout computed to be: 30 24/24 Test #24: CompatibilityHelpersTests ........***Exception: SegFault 0.43 sec 0% tests passed, 24 tests failed out of 24 Label Time Summary: GTest = 11.37 sec*proc (24 tests) MpiTest = 1.01 sec*proc (2 tests) UnitTest = 11.37 sec*proc (24 tests) Total Test time (real) = 11.41 sec The following tests FAILED: 1 - TestUtilsUnitTests (SEGFAULT) 2 - TestUtilsMpiUnitTests (Failed) 3 - MdlibUnitTest (SEGFAULT) 4 - AppliedForcesUnitTest (SEGFAULT) 5 - ListedForcesTest (SEGFAULT) 6 - CommandLineUnitTests (SEGFAULT) 7 - EwaldUnitTests (SEGFAULT) 8 - FFTUnitTests (SEGFAULT) 9 - GpuUtilsUnitTests (SEGFAULT) 10 - HardwareUnitTests (SEGFAULT) 11 - MathUnitTests (SEGFAULT) 12 - MdrunUtilityUnitTests (SEGFAULT) 13 - MdrunUtilityMpiUnitTests (Failed) 14 - OnlineHelpUnitTests (SEGFAULT) 15 - OptionsUnitTests (SEGFAULT) 16 - RandomUnitTests (SEGFAULT) 17 - TableUnitTests (SEGFAULT) 18 - TaskAssignmentUnitTests (SEGFAULT) 19 - UtilityUnitTests (SEGFAULT) 20 - FileIOTests (SEGFAULT) 21 - PullTest (SEGFAULT) 22 - AwhTest (SEGFAULT) 23 - SimdUnitTests (SEGFAULT) 24 - CompatibilityHelpersTests (SEGFAULT) Errors while running CTest debian/rules:148: recipe for target 'build-mpich' failed make: *** [build-mpich] Error 8 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20180617-0007 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 2433620 Build-Time: 3282 Distribution: cosmic-proposed Fail-Stage: build Host Architecture: armhf Install-Time: 36 Job: gromacs_2018.2-1.dsc Machine Architecture: arm64 Package: gromacs Package-Time: 3322 Source-Version: 2018.2-1 Space: 2433620 Status: attempted Version: 2018.2-1 -------------------------------------------------------------------------------- Finished at 20180617-0007 Build needed 00:55:22, 2433620k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-15023449 Scanning for processes to kill in build PACKAGEBUILD-15023449